AlfalfaGEDB | Msa0317250

M. sativa cultivar zhongmu-4 / Msa0317250

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0016070 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031425 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363 GO:2000112
PFAM: PF13041.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0317250	KYP62645.1	22.476	614	352	13	315	853	5	569	1.30e-24	124
Msa0317250	KYP62645.1	30.272	294	139	9	720	998	19	261	1.63e-18	105
Msa0317250	KYP62645.1	41.079	241	105	4	104	340	2	209	1.75e-39	172
Msa0317250	KYP62645.1	50.823	1155	446	21	3	1048	316	1457	0.0	1046
Msa0317250	KYP62645.1	63.148	521	181	5	151	663	946	1463	0.0	661

Showing 1 to 5 of 5 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0317250	sp\|Q8GWE0\|PP314_ARATH	51.510	629	294	6	26	647	70	694	0.0	646
Msa0317250	sp\|Q8GWE0\|PP314_ARATH	55.357	392	165	5	659	1041	307	697	2.18e-138	436
Msa0317250	sp\|Q8GWE0\|PP314_ARATH	25.150	167	124	1	674	840	184	349	2.40e-11	71.6

Showing 1 to 3 of 3 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002930	Msa0317250	0.805479	1.308771e-49	-8.615850e-47
Msa0016670	Msa0317250	0.837182	6.045782e-57	-8.615850e-47
Msa0017510	Msa0317250	0.815246	1.020161e-51	-8.615850e-47
Msa0032120	Msa0317250	0.803840	2.876643e-49	-8.615850e-47
Msa0032840	Msa0317250	-0.813450	2.543819e-51	-8.615850e-47
Msa0040450	Msa0317250	0.815342	9.711990e-52	-8.615850e-47
Msa0046100	Msa0317250	0.827483	1.525688e-54	-8.615850e-47
Msa0067990	Msa0317250	0.802827	4.662978e-49	-8.615850e-47
Msa0074320	Msa0317250	0.813529	2.444404e-51	-8.615850e-47
Msa0077200	Msa0317250	0.800913	1.153111e-48	-8.615850e-47

Showing 1 to 10 of 205 entries

Previous1 2 3 4 5…21Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0317250	MtrunA17_Chr2g0290431	90.249	482	47	0	111	592	1	482	0.0	893
Msa0317250	MtrunA17_Chr2g0290431	86.850	327	41	1	659	983	156	482	0.0	583
Msa0317250	MtrunA17_Chr2g0290441	57.675	671	265	6	6	665	24	686	0.0	739
Msa0317250	MtrunA17_Chr2g0290441	58.537	410	157	5	649	1049	274	679	1.40e-155	477
Msa0317250	MtrunA17_Chr4g0076151	55.929	624	267	5	32	650	81	701	0.0	702
Msa0317250	MtrunA17_Chr4g0076151	61.282	390	143	4	659	1041	313	701	1.51e-163	498
Msa0317250	MtrunA17_Chr4g0076151	24.706	170	127	1	684	853	200	368	1.34e-12	72.0
Msa0317250	MtrunA17_Chr2g0290451	52.142	677	303	11	10	670	16	687	0.0	657
Msa0317250	MtrunA17_Chr2g0290451	55.721	402	167	5	656	1047	276	676	1.73e-145	451
Msa0317250	MtrunA17_Chr4g0054821	34.244	622	395	5	47	655	95	715	7.14e-121	387

Showing 1 to 10 of 1,031 entries

Previous1 2 3 4 5…104Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0317250	AT4G16390.1	51.510	629	294	6	26	647	70	694	0.0	646
Msa0317250	AT4G16390.1	55.357	392	165	5	659	1041	307	697	2.21e-139	436
Msa0317250	AT4G16390.1	25.150	167	124	1	674	840	184	349	2.44e-12	71.6
Msa0317250	AT5G46580.1	33.796	648	412	8	13	647	59	702	2.43e-113	367
Msa0317250	AT5G46580.1	35.492	386	242	4	659	1038	318	702	3.40e-73	257
Msa0317250	AT5G46580.1	27.044	159	109	3	674	832	236	387	5.14e-13	73.9
Msa0317250	AT1G74750.2	22.872	564	392	7	90	644	315	844	1.72e-38	155
Msa0317250	AT1G74750.2	21.294	371	280	6	676	1035	475	844	2.38e-22	104
Msa0317250	AT1G74750.2	24.068	295	209	7	659	943	351	640	8.88e-21	99.4
Msa0317250	AT1G74750.1	22.872	564	392	7	90	644	315	844	1.72e-38	155

Showing 1 to 10 of 1,349 entries

Previous1 2 3 4 5…135Next

Find 192 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGATCTCAAACTAAG+TGG	0.560970	2_4:-14908332	Msa0317250:CDS
AAAACAGATCTCAAACTAAG+TGG	0.560970	2_4:-14909505	Msa0317250:CDS
AAAGTTGATGGAAGAGAGGG+AGG	0.469896	2_4:-14909699	Msa0317250:CDS
AAATGATTTAACTAAGGCTT+TGG	0.316066	2_4:-14908250	Msa0317250:CDS
AAATGATTTAACTAAGGCTT+TGG	0.316066	2_4:-14909423	Msa0317250:CDS
AACGAACTGATGATGTTGTG+AGG	0.720242	2_4:-14908701	Msa0317250:CDS
AAGATATTTGATGGAAAAGA+GGG	0.526363	2_4:-14908529	Msa0317250:CDS
AAGGAACTGATGATGTTGTG+AGG	0.736520	2_4:-14909874	Msa0317250:CDS
AAGGAGCTTCCACCAGTACT+TGG	0.468131	2_4:-14908219	Msa0317250:CDS
AAGGAGCTTCCACCAGTACT+TGG	0.468131	2_4:-14909392	Msa0317250:CDS

Showing 1 to 10 of 192 entries

Previous1 2 3 4 5…20Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTTATCAAAATCCCACATCT+GGG	-	chr2_4:14908151-14908170	Msa0317250:CDS	30.0%
CAAGTGTATGAAATCTTGAA+TGG	-	chr2_4:14908290-14908309	Msa0317250:CDS	30.0%
TTTGATGAAATGCTTCAAAG+AGG	-	chr2_4:14908500-14908519	Msa0317250:CDS	30.0%
TTGATGAAATGCTTCAAAGA+GGG	-	chr2_4:14908501-14908520	Msa0317250:CDS	30.0%
GTCGAAAACGTAATAACATT+AGG	+	chr2_4:14908533-14908552	None:intergenic	30.0%
TGCATAAGAACCAATTATAG+AGG	+	chr2_4:14908657-14908676	None:intergenic	30.0%
GATTAAGATGTATGGGAATT+TGG	-	chr2_4:14908766-14908785	Msa0317250:CDS	30.0%
TTAAGATGTATGGGAATTTG+GGG	-	chr2_4:14908768-14908787	Msa0317250:CDS	30.0%
TACAATGATATGAAGGTTCT+TGG	-	chr2_4:14908815-14908834	Msa0317250:CDS	30.0%
CAATAATATGTTGTATGCCA+TGG	-	chr2_4:14908862-14908881	Msa0317250:CDS	30.0%

Showing 1 to 10 of 233 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	14908032	14911181	14908032	ID=Msa0317250;Name=Msa0317250
chr2_4	mRNA	14908032	14911181	14908032	ID=Msa0317250-mRNA-1;Parent=Msa0317250;Name=Msa0317250-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|1049
chr2_4	exon	14908032	14911181	14908032	ID=Msa0317250-mRNA-1:exon:5603;Parent=Msa0317250-mRNA-1
chr2_4	CDS	14908032	14911181	14908032	ID=Msa0317250-mRNA-1:cds;Parent=Msa0317250-mRNA-1

Gene Sequence

>Msa0317250

ATGCTTCACACTCACACTCTTTGCTCTCCCTTTCCTTCCACCCTCACACCCTTCTCTACTTTACACCCCAATCGCAAACTCTTCTCCATTCAAAACCCAGATGCAAAGTCGTCTTCACCTTTATCAAAATCCCACATCTGGGTCAATCCCAAAAACCCCAAAATCAAATCAATTTTGAAGAATTCTGATTATACTGACACTTCATTGTTTTTGAAACTTGCCAAATCTCTTGACTCATGTGATCCTACTAATGAGCAACAAGTGTATGAAATCTTGAATGGTTTTGAGGGTAATGTAACCGAACGCACTGCCGGGTTTATTCTTAATAACATGATGAAACTTGATAATGCTGTGTTTGTTTTTAGATATTTTGTAGACAAGATTGAATCTGATAAGTGTGTCGTTCTTTATACTGTGATGATGAAAAAGTTTCGGGAAATTAAGAATTTTGAAAATGCAGAGAAACTGTTTGATGAAATGCTTCAAAGAGGGGTGAAGCCTAATGTTATTACGTTTTCGACGATGATTATTTGTGCTGCGCTGTGTTCGATGCATCATAAGGCTGTGGAGTGGTTTGAGATGATGGGCTCGTTTGAATGTGAACCGAGTGATGATCTGTCAGCCTCTATAATTGGTTCTTATGCATGCGTTGGTGATGTTGATACAGCTTTGAGATTGTATGATCGTGCAAAGAAGGAGAAATGTAAAGTTGATAAGAGAGTGTTCATGGCGTTGATTAAGATGTATGGGAATTTGGGGAATTATGATGGATGCGAGAGTATTTACAATGATATGAAGGTTCTTGGTGTTAAGGCAAACTTCACAACATACAATAATATGTTGTATGCCATGGGAAAAGCTAAGAGGGCATGGAAAGCTAAGGCTATATATGAGGAGATGTTAAACAATGGATTTTCACCAGACGGGTCAACCTACAGAGCTGTCTTGGAAGCGTATTGTACAGGAAGGTATAAAGATGATGCTTTGAGAGTGTATAAGGAAATGAAAGAAAAGGGAAAGGATATCGATAGATTTCTGTATAATATGCTTCTTAAAATGTGTGTTGATGTTGGTTATGTAGATGAAGCTGTTGAAATATTTAAAGATATGAAACATTCTGAAACTTGCCATCCAGACAGTTTTACATATTCATCAATGGTTAACATGTACTCCTGCACCGGAAACTTTTCTGAGGCTGAAGACATGTTGAATGAAATGATTGGTGGTGGATTTGAGCCTAATATTTCCATTCTGACATCTCTCATTGGTTGCTATGGAAATGCCAAAGGAACTGATGATGTTGTGAGGATATTTGATAAACTATTGGATTTGGGCATTAGTTCTGATGATCGCTTGTGTGGTTGTTTTCTGCATGTAATGACAGGAATAGCAAAACAAGAACATGGTAAAATAACAGATTGCATTGAGAAGGCTAATCCAAAGCTTGGTTTTGTGGTTAGAAAGTTGATGGAAGAGAGGGAGGGTGCAGATTTTAGGAAGGAGGCATTAGAACTTTTTAATTCAATTGATGACTATGTTATAAAGAAGTCTTTGTGCAACAACCTAATTGATCTTTGTGTCAATATGGAAGTTCAGGATAGAGCTCGCGACCTTTTTGACTTGGGACTTAGTCTTGAGATATATACAGATATACAAAACAGATCTCAAACTAAGTGGTCTTTGCATTTAAAGAGTCTCTCAACTGGAGCTGCTCTAACAGCCTTACATGTTTGGGTAAATGATTTAACTAAGGCTTTGGAATCAGGGAAGGAGCTTCCACCAGTACTTGGAATTTACACCGGGACTCAAAAAAACAAGTCTGCACCTAGAGTAGTTGAATCATATATGAAAGAACATAATGCTCCATTCCAAAAGGATGCTGATATGGCTGGCTGGTTTTTGACAACAAACGGAGCAGTCAAGTCGTGGCTGCAGTCTAGAGGTTTATCTGTAACAGACGACACTTTGAACTCTAGGGTTTTAGGTGTTAAGGCAAGCTTGGCAGCATACAATAATATGTTGTATGGAAAAGCTAAGAGGGAATGGAAAGCTAAGGCTATATATGAGGAGATGTTAAACAATGGAATTTCACCAAATCAGTCAACCTACGGAGCTGTCTTGCAAGCATATTGTAGAGGAAGGTATAAAGATGATGCTTTGAGAGTGTATAAGGAAATGAAAGAAAAGGGAAAGGATATCGATAGAGTTCTGTATAATATGCTTCTTAAAATGTGTGCTGATGTTGGTTATGTAGATGAAGCTGTTGAAATATTTAAAGATATGAAACATTCTGAAACTTGCCATCCAGACAGTTTTACATACTCATCAATGGTTAAAATGTACTCCTGCACTGGAAACTTTTCTGAGGCAGAAGACATGTTGAATGAAATGATTGGTGGTGGATTTGAGCCTAATATTTCCATTCTGATACCTCTCATTGGTTGCTATGGAAATGCCAAACGAACTGATGATGTTGTGAGGATATTTGATAAACTTTTGGATTTAGGCATTAGTTCTGATGATCGCTTGTGCGGTCGTCTTCTGCATGTAATGACACGAGTACCAAAACAAGAACTTGGTAAAATAACAGATTGCATTGAGAAGGCTAATCCAAAGCTTGGTTTTGTGGTAAGATATTTGATGGAAAAGAGGGAAGGTGCAGATTTTAGGAAGGAGGCATTAGAACTTTTGAATTCAATTGATGACTATGTTATAAAGAAGTCTTTGTGCAACAGCCTAATTGATCTTTGTGTCAATATGGAAGTTCAGGATAGAGCTCACGACCTTCTTGACTTGGGACTTAGTCTTGAGATATATACAGATATACAAAACAGATCTCAAACTAAGTGGTCTTTGCATTTAAAGAGTCTCTCAACTGGAGCTGCTCTAACAGCCTTACATGTTTGGGTAAATGATTTAACTAAGGCTTTGGAATCAGGGAAGGAGCTTCCACCAGTACTTGGAATTTACACCGGGACTCAAAAAAACAAGTCTGCACCTAGAGTAGTTGAATCATATATGAAAGAACATAATGCTCCATTCCAAAAGGATGCTGATATGGCTGGCTGGTTTTCGACAACGAATGGAGCTGTCAAGTTGTGGCTGCAGTCTAGAGGTTCATCTGTAACAGATGATAGTCTGAATCAATAA

Protein sequence

>Msa0317250

MLHTHTLCSPFPSTLTPFSTLHPNRKLFSIQNPDAKSSSPLSKSHIWVNPKNPKIKSILKNSDYTDTSLFLKLAKSLDSCDPTNEQQVYEILNGFEGNVTERTAGFILNNMMKLDNAVFVFRYFVDKIESDKCVVLYTVMMKKFREIKNFENAEKLFDEMLQRGVKPNVITFSTMIICAALCSMHHKAVEWFEMMGSFECEPSDDLSASIIGSYACVGDVDTALRLYDRAKKEKCKVDKRVFMALIKMYGNLGNYDGCESIYNDMKVLGVKANFTTYNNMLYAMGKAKRAWKAKAIYEEMLNNGFSPDGSTYRAVLEAYCTGRYKDDALRVYKEMKEKGKDIDRFLYNMLLKMCVDVGYVDEAVEIFKDMKHSETCHPDSFTYSSMVNMYSCTGNFSEAEDMLNEMIGGGFEPNISILTSLIGCYGNAKGTDDVVRIFDKLLDLGISSDDRLCGCFLHVMTGIAKQEHGKITDCIEKANPKLGFVVRKLMEEREGADFRKEALELFNSIDDYVIKKSLCNNLIDLCVNMEVQDRARDLFDLGLSLEIYTDIQNRSQTKWSLHLKSLSTGAALTALHVWVNDLTKALESGKELPPVLGIYTGTQKNKSAPRVVESYMKEHNAPFQKDADMAGWFLTTNGAVKSWLQSRGLSVTDDTLNSRVLGVKASLAAYNNMLYGKAKREWKAKAIYEEMLNNGISPNQSTYGAVLQAYCRGRYKDDALRVYKEMKEKGKDIDRVLYNMLLKMCADVGYVDEAVEIFKDMKHSETCHPDSFTYSSMVKMYSCTGNFSEAEDMLNEMIGGGFEPNISILIPLIGCYGNAKRTDDVVRIFDKLLDLGISSDDRLCGRLLHVMTRVPKQELGKITDCIEKANPKLGFVVRYLMEKREGADFRKEALELLNSIDDYVIKKSLCNSLIDLCVNMEVQDRAHDLLDLGLSLEIYTDIQNRSQTKWSLHLKSLSTGAALTALHVWVNDLTKALESGKELPPVLGIYTGTQKNKSAPRVVESYMKEHNAPFQKDADMAGWFSTTNGAVKLWLQSRGSSVTDDSLNQ*