Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0130350 | XP_003591771.1 | 96.833 | 442 | 14 | 0 | 1 | 442 | 1 | 442 | 0.0 | 871 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0130350 | sp|Q8CIA9|MF14B_MOUSE | 26.284 | 331 | 220 | 7 | 55 | 378 | 83 | 396 | 7.44e-22 | 101 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0130350 | G7I364 | 96.833 | 442 | 14 | 0 | 1 | 442 | 1 | 442 | 0.0 | 871 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024650 | Msa0130350 | 0.807596 | 4.678555e-50 | -8.615850e-47 |
| Msa0036260 | Msa0130350 | 0.836308 | 1.009570e-56 | -8.615850e-47 |
| Msa0038010 | Msa0130350 | 0.818518 | 1.879812e-52 | -8.615850e-47 |
| Msa0084190 | Msa0130350 | 0.840402 | 8.884855e-58 | -8.615850e-47 |
| Msa0130350 | Msa0130360 | 0.843111 | 1.712413e-58 | -8.615850e-47 |
| Msa0130350 | Msa0132250 | 0.808236 | 3.419831e-50 | -8.615850e-47 |
| Msa0130350 | Msa0136090 | 0.815108 | 1.094367e-51 | -8.615850e-47 |
| Msa0130350 | Msa0176600 | 0.804840 | 1.780748e-49 | -8.615850e-47 |
| Msa0130350 | Msa0245660 | 0.802568 | 5.274587e-49 | -8.615850e-47 |
| Msa0130350 | Msa0364550 | 0.836595 | 8.537212e-57 | -8.615850e-47 |
| Msa0130350 | Msa0409490 | 0.800018 | 1.754686e-48 | -8.615850e-47 |
| Msa0130350 | Msa0433090 | 0.808619 | 2.832942e-50 | -8.615850e-47 |
| Msa0130350 | Msa0436810 | 0.801634 | 8.210181e-49 | -8.615850e-47 |
| Msa0130350 | Msa0487110 | 0.800716 | 1.265133e-48 | -8.615850e-47 |
| Msa0130350 | Msa0524710 | 0.811793 | 5.859843e-51 | -8.615850e-47 |
| Msa0130350 | Msa0538520 | 0.801153 | 1.029620e-48 | -8.615850e-47 |
| Msa0130350 | Msa0587730 | 0.823286 | 1.503244e-53 | -8.615850e-47 |
| Msa0130350 | Msa0711240 | 0.811864 | 5.656840e-51 | -8.615850e-47 |
| Msa0130350 | Msa0735130 | 0.823231 | 1.548283e-53 | -8.615850e-47 |
| Msa0130350 | Msa0768670 | 0.800654 | 1.302344e-48 | -8.615850e-47 |
| Msa0130350 | Msa0776340 | 0.803890 | 2.808301e-49 | -8.615850e-47 |
| Msa0130350 | Msa0847140 | 0.816777 | 4.641520e-52 | -8.615850e-47 |
| Msa0130350 | Msa0896920 | 0.810547 | 1.091793e-50 | -8.615850e-47 |
| Msa0130350 | Msa0962290 | 0.802847 | 4.620438e-49 | -8.615850e-47 |
| Msa0130350 | Msa1005370 | 0.814637 | 1.392149e-51 | -8.615850e-47 |
| Msa0130350 | Msa1024420 | 0.808053 | 3.740552e-50 | -8.615850e-47 |
| Msa0130350 | Msa1026050 | 0.807296 | 5.417345e-50 | -8.615850e-47 |
| Msa0130350 | Msa1031060 | 0.814811 | 1.274164e-51 | -8.615850e-47 |
| Msa0130350 | Msa1085820 | 0.805371 | 1.378720e-49 | -8.615850e-47 |
| Msa0130350 | Msa1100330 | 0.803597 | 3.231902e-49 | -8.615850e-47 |
| Msa0130350 | Msa1119670 | 0.822929 | 1.820807e-53 | -8.615850e-47 |
| Msa0130350 | Msa1124220 | 0.801433 | 9.025563e-49 | -8.615850e-47 |
| Msa0130350 | Msa1152330 | 0.808855 | 2.522544e-50 | -8.615850e-47 |
| Msa0130350 | Msa1339530 | 0.816799 | 4.590177e-52 | -8.615850e-47 |
| Msa0130350 | Msa1357840 | 0.816388 | 5.675478e-52 | -8.615850e-47 |
| Msa0130350 | Msa1364690 | 0.801255 | 9.815541e-49 | -8.615850e-47 |
| Msa0130350 | Msa1437590 | 0.811331 | 7.384090e-51 | -8.615850e-47 |
| Msa0130350 | Msa1456600 | 0.800505 | 1.396930e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0130350 | MtrunA17_Chr1g0198441 | 96.833 | 442 | 14 | 0 | 1 | 442 | 1 | 442 | 0.0 | 871 |
| Msa0130350 | MtrunA17_Chr1g0198451 | 87.330 | 442 | 55 | 1 | 1 | 442 | 1 | 441 | 0.0 | 786 |
| Msa0130350 | MtrunA17_Chr1g0211401 | 34.571 | 431 | 276 | 3 | 10 | 434 | 4 | 434 | 3.97e-86 | 270 |
| Msa0130350 | MtrunA17_Chr3g0143461 | 35.054 | 368 | 228 | 2 | 64 | 420 | 3 | 370 | 2.00e-75 | 240 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0130350 | AT5G42210.1 | 36.427 | 431 | 244 | 2 | 13 | 423 | 10 | 430 | 5.40e-93 | 288 |
| Msa0130350 | AT5G42210.2 | 35.623 | 393 | 223 | 2 | 13 | 385 | 10 | 392 | 1.98e-82 | 259 |
| Msa0130350 | AT2G16980.2 | 33.478 | 460 | 266 | 6 | 8 | 440 | 4 | 450 | 1.19e-77 | 249 |
| Msa0130350 | AT2G16980.3 | 33.478 | 460 | 266 | 6 | 8 | 440 | 19 | 465 | 2.26e-77 | 249 |
| Msa0130350 | AT2G16980.4 | 34.651 | 430 | 252 | 5 | 8 | 410 | 19 | 446 | 8.17e-77 | 247 |
| Msa0130350 | AT2G16970.2 | 32.648 | 438 | 270 | 3 | 8 | 420 | 4 | 441 | 4.22e-74 | 239 |
| Msa0130350 | AT2G16990.7 | 33.254 | 421 | 251 | 6 | 13 | 407 | 8 | 424 | 2.05e-71 | 232 |
| Msa0130350 | AT2G16990.1 | 33.092 | 414 | 247 | 6 | 13 | 400 | 8 | 417 | 2.34e-68 | 224 |
| Msa0130350 | AT2G16990.2 | 33.092 | 414 | 247 | 6 | 13 | 400 | 8 | 417 | 2.34e-68 | 224 |
| Msa0130350 | AT2G16980.1 | 33.580 | 405 | 240 | 5 | 8 | 385 | 19 | 421 | 4.31e-67 | 220 |
| Msa0130350 | AT2G16970.3 | 31.905 | 420 | 261 | 3 | 8 | 402 | 4 | 423 | 8.36e-66 | 218 |
| Msa0130350 | AT2G16970.4 | 32.506 | 403 | 247 | 3 | 8 | 385 | 4 | 406 | 3.62e-65 | 215 |
| Msa0130350 | AT2G16970.7 | 32.506 | 403 | 247 | 3 | 8 | 385 | 4 | 406 | 3.62e-65 | 215 |
| Msa0130350 | AT2G16990.4 | 31.920 | 401 | 243 | 6 | 13 | 387 | 8 | 404 | 2.66e-62 | 207 |
| Msa0130350 | AT2G16990.6 | 31.920 | 401 | 243 | 6 | 13 | 387 | 8 | 404 | 2.66e-62 | 207 |
| Msa0130350 | AT2G16980.5 | 31.409 | 433 | 240 | 6 | 8 | 385 | 19 | 449 | 8.87e-62 | 207 |
| Msa0130350 | AT2G16990.8 | 32.126 | 414 | 224 | 7 | 13 | 400 | 8 | 390 | 3.40e-58 | 197 |
| Msa0130350 | AT2G16970.1 | 32.759 | 348 | 209 | 3 | 8 | 330 | 4 | 351 | 1.74e-55 | 189 |
| Msa0130350 | AT2G16970.6 | 31.300 | 377 | 234 | 3 | 8 | 359 | 4 | 380 | 1.81e-55 | 189 |
| Msa0130350 | AT2G16970.8 | 32.759 | 348 | 209 | 3 | 8 | 330 | 4 | 351 | 1.97e-55 | 188 |
| Msa0130350 | AT2G16990.3 | 31.519 | 349 | 211 | 5 | 13 | 335 | 8 | 354 | 6.11e-50 | 174 |
| Msa0130350 | AT2G16990.5 | 31.519 | 349 | 211 | 5 | 13 | 335 | 8 | 354 | 6.11e-50 | 174 |
| Msa0130350 | AT2G16980.6 | 33.333 | 315 | 182 | 4 | 122 | 410 | 1 | 313 | 4.34e-46 | 163 |
| Msa0130350 | AT2G16970.5 | 36.747 | 166 | 105 | 0 | 255 | 420 | 169 | 334 | 1.64e-28 | 115 |
| Msa0130350 | AT2G16970.5 | 35.882 | 170 | 108 | 1 | 8 | 176 | 4 | 173 | 1.91e-28 | 115 |
Find 82 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGTGTAGGCTTGGCTTTC+TGG | 0.046732 | 1_3:-60527807 | Msa0130350:intron |
| GCCTAACTCTTGGTTCTTTC+CGG | 0.178248 | 1_3:+60528580 | None:intergenic |
| TTTCTTTCCTTCTAGATTAC+TGG | 0.206606 | 1_3:-60529385 | Msa0130350:intron |
| TCTTCTGCTGCACATGTTAT+TGG | 0.211223 | 1_3:-60528828 | Msa0130350:CDS |
| GATGGTGGTACTTCCACTTT+TGG | 0.225106 | 1_3:-60529353 | Msa0130350:CDS |
| GCTGGGGCAAATTCAATATC+TGG | 0.260798 | 1_3:-60527188 | Msa0130350:CDS |
| ACTTGCTTGGAATCAATCTA+AGG | 0.285147 | 1_3:-60529081 | Msa0130350:CDS |
| CCTAACTCTTGGTTCTTTCC+GGG | 0.314258 | 1_3:+60528581 | None:intergenic |
| CTTCTGCTGCACATGTTATT+GGG | 0.316928 | 1_3:-60528827 | Msa0130350:CDS |
| AGGTATTATACTGGTGGATA+TGG | 0.324040 | 1_3:+60529285 | None:intergenic |
| GCTTCCAATACTTAATCCTT+TGG | 0.324359 | 1_3:-60527952 | Msa0130350:CDS |
| CCTAGTTGAAACTGTGAAAC+TGG | 0.339691 | 1_3:-60528606 | Msa0130350:CDS |
| TCATCACTTGAACCAGTATC+AGG | 0.341614 | 1_3:+60526809 | None:intergenic |
| GCCATTGATGTAAATAGCTT+TGG | 0.356157 | 1_3:+60529515 | None:intergenic |
| CCATACTTAGGTGGCTCATT+TGG | 0.362701 | 1_3:-60527539 | Msa0130350:CDS |
| GGAAGTAACAAGTGGAATAA+AGG | 0.370458 | 1_3:+60529630 | None:intergenic |
| TCCACCAGTATAATACCTTT+TGG | 0.371542 | 1_3:-60529280 | Msa0130350:intron |
| TACTTCCACTAAGCATTCAT+TGG | 0.375771 | 1_3:-60529614 | Msa0130350:CDS |
| TTGTTGTAGCTTTACTTGCT+TGG | 0.379609 | 1_3:-60529094 | Msa0130350:intron |
| CCAAATGAGCCACCTAAGTA+TGG | 0.382983 | 1_3:+60527539 | None:intergenic |
| TCCTCATAGATTTGTATCTT+CGG | 0.388999 | 1_3:+60528528 | None:intergenic |
| CCGCGGAAATAGTAATCTTC+AGG | 0.389670 | 1_3:-60528502 | Msa0130350:intron |
| AAAGAGCAGCAGTATTTAGT+TGG | 0.403122 | 1_3:-60528863 | Msa0130350:CDS |
| TGGATTAGCATGGGCACCTT+GGG | 0.405021 | 1_3:-60527787 | Msa0130350:intron |
| CTTCTGATGATGGTTGGAAT+TGG | 0.419310 | 1_3:-60528158 | Msa0130350:CDS |
| GCTAAAACCTTTGCATTCAA+AGG | 0.425492 | 1_3:+60527009 | None:intergenic |
| GTCAAAGGACTCATAACAAT+TGG | 0.430120 | 1_3:+60527155 | None:intergenic |
| CTGGATTAGCATGGGCACCT+TGG | 0.432018 | 1_3:-60527788 | Msa0130350:CDS |
| AATTCAGAAGCGGGTCTTGT+TGG | 0.432583 | 1_3:+60526771 | None:intergenic |
| AGCATCAAGCTCAACCAATC+AGG | 0.436087 | 1_3:-60527356 | Msa0130350:intron |
| TCCAAAGCTATTTACATCAA+TGG | 0.440133 | 1_3:-60529516 | Msa0130350:CDS |
| TGCATGCTAAATCCTGATAC+TGG | 0.440797 | 1_3:-60526821 | Msa0130350:CDS |
| GTTCTCAGAACTTCTGATGA+TGG | 0.442891 | 1_3:-60528168 | Msa0130350:CDS |
| ATTACCAAAAGGTATTATAC+TGG | 0.447589 | 1_3:+60529276 | None:intergenic |
| GCAATCCAATGAATGCTTAG+TGG | 0.451192 | 1_3:+60529609 | None:intergenic |
| CCAATACTTAATCCTTTGGT+TGG | 0.453681 | 1_3:-60527948 | Msa0130350:CDS |
| CCAACCAAAGGATTAAGTAT+TGG | 0.467513 | 1_3:+60527948 | None:intergenic |
| ATATGCTATTGATGCAAGTA+AGG | 0.470324 | 1_3:+60527902 | None:intergenic |
| CTAAAACCTTTGCATTCAAA+GGG | 0.470696 | 1_3:+60527010 | None:intergenic |
| CTTGGCTTTCTGGATTAGCA+TGG | 0.472037 | 1_3:-60527797 | Msa0130350:CDS |
| ATGCATATAAAGTGGACAAA+AGG | 0.473052 | 1_3:+60528634 | None:intergenic |
| CCAGTTTCACAGTTTCAACT+AGG | 0.478479 | 1_3:+60528606 | None:intergenic |
| AAAAGGAAAACAAACCTGAT+TGG | 0.480429 | 1_3:+60527342 | None:intergenic |
| TCAGAACTTCTGATGATGGT+TGG | 0.481884 | 1_3:-60528164 | Msa0130350:CDS |
| TAATACATACTGTTTGTTGA+AGG | 0.491556 | 1_3:+60529493 | None:intergenic |
| TGGAGCAAGATGATTGTTGA+GGG | 0.492964 | 1_3:+60529535 | None:intergenic |
| AAATGTGCGAAGCACATAGT+AGG | 0.495737 | 1_3:+60529046 | None:intergenic |
| TTGGCTTTCTGGATTAGCAT+GGG | 0.498516 | 1_3:-60527796 | Msa0130350:CDS |
| CTGCATTTCTGTCGCGTATG+TGG | 0.504768 | 1_3:-60528994 | Msa0130350:intron |
| ATCAGTTATAATTCAGAAGC+GGG | 0.507005 | 1_3:+60526762 | None:intergenic |
| GCAGTATTTAGTTGGATCAC+TGG | 0.507206 | 1_3:-60528855 | Msa0130350:CDS |
| AGGAAGAAATGCATATAAAG+TGG | 0.514915 | 1_3:+60528626 | None:intergenic |
| CCCGGAAAGAACCAAGAGTT+AGG | 0.516294 | 1_3:-60528581 | Msa0130350:CDS |
| TTCAAGTGATGAAGACTTGG+AGG | 0.521588 | 1_3:-60526798 | Msa0130350:CDS |
| TCTGAAAGCTGACCCAAAAG+TGG | 0.523725 | 1_3:+60529340 | None:intergenic |
| TTATTGGGAACGTCTTTGCT+CGG | 0.524226 | 1_3:-60528812 | Msa0130350:CDS |
| TACTGGTGGATATGGTAAGA+AGG | 0.538200 | 1_3:+60529293 | None:intergenic |
| GCCGAAGATACAAATCTATG+AGG | 0.555151 | 1_3:-60528529 | Msa0130350:CDS |
| CTATGGCAGGTACCATACTT+AGG | 0.555359 | 1_3:-60527551 | Msa0130350:intron |
| AGAAACATGTCGTGGTGGAG+TGG | 0.565655 | 1_3:-60529669 | None:intergenic |
| AATGCTCCCTTTGAATGCAA+AGG | 0.566269 | 1_3:-60527016 | Msa0130350:CDS |
| ATCACTTTCTCTCCAACCAA+AGG | 0.567989 | 1_3:+60527936 | None:intergenic |
| TTGGAGCAAGATGATTGTTG+AGG | 0.568723 | 1_3:+60529534 | None:intergenic |
| GGAGTGGATTCTTTGAGCTG+AGG | 0.571185 | 1_3:-60529653 | Msa0130350:CDS |
| CAGTCATACATTAAGAGGCG+TGG | 0.574023 | 1_3:-60528407 | Msa0130350:CDS |
| GTATTCTACTCACAAGTCAA+AGG | 0.577330 | 1_3:+60527140 | None:intergenic |
| GAAACTGTGAAACTGGATCC+CGG | 0.578812 | 1_3:-60528599 | Msa0130350:CDS |
| GATATGGTAAGAAGGAGTAG+AGG | 0.581219 | 1_3:+60529301 | None:intergenic |
| TACTCACAGCAGGTTTCTCA+AGG | 0.587481 | 1_3:+60527504 | None:intergenic |
| CAGCAAAACACTGTGTATGC+CGG | 0.594917 | 1_3:+60528351 | None:intergenic |
| TGGTTCAAGTGATGAAGACT+TGG | 0.595754 | 1_3:-60526801 | Msa0130350:CDS |
| TAGTACAGAAGCCTAACTCT+TGG | 0.599829 | 1_3:+60528570 | None:intergenic |
| ACCAAAAGGTATTATACTGG+TGG | 0.609503 | 1_3:+60529279 | None:intergenic |
| TGCTTAGTGGAAGTAACAAG+TGG | 0.613388 | 1_3:+60529622 | None:intergenic |
| AATCAGTTATAATTCAGAAG+CGG | 0.622840 | 1_3:+60526761 | None:intergenic |
| TATATGTGCATCTGTATGCA+TGG | 0.633250 | 1_3:-60526984 | Msa0130350:intron |
| CCTGAAGATTACTATTTCCG+CGG | 0.641877 | 1_3:+60528502 | None:intergenic |
| ATCTCAGAAACATGTCGTGG+TGG | 0.661528 | 1_3:-60529674 | None:intergenic |
| GGTCAGCTTTCAGATGAACA+CGG | 0.662882 | 1_3:-60529331 | Msa0130350:CDS |
| CTCATCTCAGAAACATGTCG+TGG | 0.663073 | 1_3:-60529677 | None:intergenic |
| CAAATCTATGAGGAATGCCG+CGG | 0.682083 | 1_3:-60528519 | Msa0130350:CDS |
| TGGCAGGTACCATACTTAGG+TGG | 0.694561 | 1_3:-60527548 | Msa0130350:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATAATTTTATCATATATG+AGG | + | chr1_3:60528961-60528980 | None:intergenic | 10.0% |
| !! | ATAATATATATTAGTAGTGT+TGG | + | chr1_3:60526977-60526996 | None:intergenic | 15.0% |
| !! | TATATATTATTAATGAGTTG+AGG | - | chr1_3:60526987-60527006 | Msa0130350:CDS | 15.0% |
| !! | TGAAAAATTTGACAATATTT+AGG | + | chr1_3:60528001-60528020 | None:intergenic | 15.0% |
| !! | TAAACATGTAAATTTGTATA+AGG | + | chr1_3:60528793-60528812 | None:intergenic | 15.0% |
| !! | TACAAATTTACATGTTTATA+TGG | - | chr1_3:60528795-60528814 | Msa0130350:CDS | 15.0% |
| !! | TGAGATAAAGAAAAAAAAAA+AGG | + | chr1_3:60529104-60529123 | None:intergenic | 15.0% |
| !! | AAATTATATGAAATGATGTT+TGG | + | chr1_3:60529161-60529180 | None:intergenic | 15.0% |
| !! | TCAAAATTAATGCAAAATAA+TGG | + | chr1_3:60529333-60529352 | None:intergenic | 15.0% |
| !! | AGTTATTATATTGTAGTATA+AGG | + | chr1_3:60529358-60529377 | None:intergenic | 15.0% |
| !!! | CAAATACTAGTATGTTATTT+TGG | - | chr1_3:60527207-60527226 | Msa0130350:CDS | 20.0% |
| !! | GTAAATCAACATAAATGTTA+AGG | + | chr1_3:60527259-60527278 | None:intergenic | 20.0% |
| !! | TTGGTTATGATTCTTAATTA+TGG | - | chr1_3:60527736-60527755 | Msa0130350:intron | 20.0% |
| !! | GATTCTTAATTATGGTTTAT+TGG | - | chr1_3:60527744-60527763 | Msa0130350:intron | 20.0% |
| !!! | TTTTGTGATTCTTCTATATA+AGG | - | chr1_3:60528396-60528415 | Msa0130350:CDS | 20.0% |
| !!! | TATTTTTTAACTATGCATCA+TGG | - | chr1_3:60528754-60528773 | Msa0130350:intron | 20.0% |
| !! | TTATTGAGTTTAATTCACTA+TGG | - | chr1_3:60528858-60528877 | Msa0130350:CDS | 20.0% |
| !!! | ATTGATTCTAACTATAAAAG+TGG | + | chr1_3:60528985-60529004 | None:intergenic | 20.0% |
| !!! | ACTTTTATAGTTAGAATCAA+TGG | - | chr1_3:60528984-60529003 | Msa0130350:intron | 20.0% |
| !! | AAATATTTAATGGCAATATC+AGG | + | chr1_3:60529018-60529037 | None:intergenic | 20.0% |
| !! | ACATGACAAGAAATATTTAA+TGG | + | chr1_3:60529028-60529047 | None:intergenic | 20.0% |
| !! | TAATACATACTGTTTGTTGA+AGG | + | chr1_3:60526936-60526955 | None:intergenic | 25.0% |
| !!! | ATTACCAAAAGGTATTATAC+TGG | + | chr1_3:60527153-60527172 | None:intergenic | 25.0% |
| ! | GTGAAATTGTAATTACCAAA+AGG | + | chr1_3:60527164-60527183 | None:intergenic | 25.0% |
| ! | TGTGTATGTCTTATAATTTG+AGG | + | chr1_3:60527189-60527208 | None:intergenic | 25.0% |
| !! | ATTTATACTTCCTCTCTTTT+AGG | - | chr1_3:60527519-60527538 | Msa0130350:CDS | 25.0% |
| !!! | TTTTTTCTATACTCACTGTT+TGG | - | chr1_3:60527717-60527736 | Msa0130350:intron | 25.0% |
| !!! | AATTATGGTTTATTGGTTTC+AGG | - | chr1_3:60527751-60527770 | Msa0130350:intron | 25.0% |
| ! | TCAAAAATGATGCTTAACAT+GGG | + | chr1_3:60527958-60527977 | None:intergenic | 25.0% |
| ! | TTCAAAAATGATGCTTAACA+TGG | + | chr1_3:60527959-60527978 | None:intergenic | 25.0% |
| !!! | TTTTTCAGTCATACATTAAG+AGG | - | chr1_3:60528014-60528033 | Msa0130350:intron | 25.0% |
| !! | TGTCTCTTTCTTTTATAAGT+TGG | - | chr1_3:60528046-60528065 | Msa0130350:intron | 25.0% |
| !! | GTCTCTTTCTTTTATAAGTT+GGG | - | chr1_3:60528047-60528066 | Msa0130350:intron | 25.0% |
| !!! | TACTATTTGAAAGCTGTTTT+TGG | - | chr1_3:60528220-60528239 | Msa0130350:intron | 25.0% |
| !!! | TTCATAATGTATTTTGGTGT+AGG | - | chr1_3:60528606-60528625 | Msa0130350:CDS | 25.0% |
| !! | TTATCAATTTTACTTACCCA+AGG | + | chr1_3:60528658-60528677 | None:intergenic | 25.0% |
| ! | AAACTCAATAACTTTCATTG+TGG | + | chr1_3:60528849-60528868 | None:intergenic | 25.0% |
| !!! | TCATCTAGTTGTTGTTATTT+TGG | - | chr1_3:60529491-60529510 | Msa0130350:intron | 25.0% |
| TCCAAAGCTATTTACATCAA+TGG | - | chr1_3:60526910-60526929 | Msa0130350:intron | 30.0% | |
| TTTCTTTCCTTCTAGATTAC+TGG | - | chr1_3:60527041-60527060 | Msa0130350:intron | 30.0% | |
| GAAAATTCCAGTAATCTAGA+AGG | + | chr1_3:60527051-60527070 | None:intergenic | 30.0% | |
| !! | GATTACTGGAATTTTCAAGA+TGG | - | chr1_3:60527055-60527074 | Msa0130350:intron | 30.0% |
| GTATGTCTTATAATTTGAGG+AGG | + | chr1_3:60527186-60527205 | None:intergenic | 30.0% | |
| ! | TTTACAATACTTTTCTCCAG+AGG | - | chr1_3:60527284-60527303 | Msa0130350:intron | 30.0% |
| ! | AAACAAATTGTCATTTCCTC+TGG | + | chr1_3:60527303-60527322 | None:intergenic | 30.0% |
| ! | TTTTCGCATATAATCAGTCA+AGG | - | chr1_3:60527400-60527419 | Msa0130350:intron | 30.0% |
| ! | TCCTCAAAACTACATTTTTG+TGG | - | chr1_3:60527642-60527661 | Msa0130350:intron | 30.0% |
| !! | ACCACAAAAATGTAGTTTTG+AGG | + | chr1_3:60527646-60527665 | None:intergenic | 30.0% |
| ATGCATATAAAGTGGACAAA+AGG | + | chr1_3:60527795-60527814 | None:intergenic | 30.0% | |
| AGGAAGAAATGCATATAAAG+TGG | + | chr1_3:60527803-60527822 | None:intergenic | 30.0% | |
| TCCTCATAGATTTGTATCTT+CGG | + | chr1_3:60527901-60527920 | None:intergenic | 30.0% | |
| !! | TTTTATAAGTTGGGAATGAC+CGG | - | chr1_3:60528056-60528075 | Msa0130350:intron | 30.0% |
| TAAATAGTAGTGACACAACA+AGG | + | chr1_3:60528142-60528161 | None:intergenic | 30.0% | |
| TGAGACTGTCAATTAAACTA+TGG | + | chr1_3:60528186-60528205 | None:intergenic | 30.0% | |
| !! | AATTGGTTCAATCTTTTCTC+AGG | - | chr1_3:60528285-60528304 | Msa0130350:intron | 30.0% |
| ! | CAATCTTTTCTCAGGTATAA+CGG | - | chr1_3:60528293-60528312 | Msa0130350:intron | 30.0% |
| ATATGCTATTGATGCAAGTA+AGG | + | chr1_3:60528527-60528546 | None:intergenic | 30.0% | |
| GAGAGCTTAGATATGATATT+AGG | + | chr1_3:60528586-60528605 | None:intergenic | 30.0% | |
| ! | GCTCTCTTCATAATGTATTT+TGG | - | chr1_3:60528600-60528619 | Msa0130350:CDS | 30.0% |
| AAAAGGAAAACAAACCTGAT+TGG | + | chr1_3:60529087-60529106 | None:intergenic | 30.0% | |
| TTGTGATGTAACTTCATTGT+AGG | - | chr1_3:60529195-60529214 | Msa0130350:intron | 30.0% | |
| TGTGATGTAACTTCATTGTA+GGG | - | chr1_3:60529196-60529215 | Msa0130350:intron | 30.0% | |
| ! | AAAGCACAAACTTTTATTGC+TGG | - | chr1_3:60529220-60529239 | Msa0130350:intron | 30.0% |
| ! | AAGCACAAACTTTTATTGCT+GGG | - | chr1_3:60529221-60529240 | Msa0130350:intron | 30.0% |
| CTAAAACCTTTGCATTCAAA+GGG | + | chr1_3:60529419-60529438 | None:intergenic | 30.0% | |
| TAACAACAACTAGATGATGT+AGG | + | chr1_3:60529488-60529507 | None:intergenic | 30.0% | |
| GGAAGTAACAAGTGGAATAA+AGG | + | chr1_3:60526799-60526818 | None:intergenic | 35.0% | |
| TACTTCCACTAAGCATTCAT+TGG | - | chr1_3:60526812-60526831 | Msa0130350:CDS | 35.0% | |
| GCCATTGATGTAAATAGCTT+TGG | + | chr1_3:60526914-60526933 | None:intergenic | 35.0% | |
| !! | TACTGGAATTTTCAAGATGG+TGG | - | chr1_3:60527058-60527077 | Msa0130350:intron | 35.0% |
| ! | AGGTATTATACTGGTGGATA+TGG | + | chr1_3:60527144-60527163 | None:intergenic | 35.0% |
| ! | TCCACCAGTATAATACCTTT+TGG | - | chr1_3:60527146-60527165 | Msa0130350:intron | 35.0% |
| !! | ACCAAAAGGTATTATACTGG+TGG | + | chr1_3:60527150-60527169 | None:intergenic | 35.0% |
| ! | TTGTTGTAGCTTTACTTGCT+TGG | - | chr1_3:60527332-60527351 | Msa0130350:intron | 35.0% |
| ACTTGCTTGGAATCAATCTA+AGG | - | chr1_3:60527345-60527364 | Msa0130350:intron | 35.0% | |
| AAAGAGCAGCAGTATTTAGT+TGG | - | chr1_3:60527563-60527582 | Msa0130350:intron | 35.0% | |
| CACAACAAGGAAAAAAGTTG+AGG | + | chr1_3:60528129-60528148 | None:intergenic | 35.0% | |
| GCTTTCAAATAGTACTGCAT+AGG | + | chr1_3:60528214-60528233 | None:intergenic | 35.0% | |
| !! | ATCAGTATGGAGGTATCAAA+AGG | + | chr1_3:60528336-60528355 | None:intergenic | 35.0% |
| ! | AAGCATTGCAATCATCAGTA+TGG | + | chr1_3:60528349-60528368 | None:intergenic | 35.0% |
| GCTTCCAATACTTAATCCTT+TGG | - | chr1_3:60528474-60528493 | Msa0130350:intron | 35.0% | |
| CCAACCAAAGGATTAAGTAT+TGG | + | chr1_3:60528481-60528500 | None:intergenic | 35.0% | |
| CCAATACTTAATCCTTTGGT+TGG | - | chr1_3:60528478-60528497 | Msa0130350:intron | 35.0% | |
| !!! | AATGTATTTTGGTGTAGGCT+TGG | - | chr1_3:60528611-60528630 | Msa0130350:CDS | 35.0% |
| AACTTTCATTGTGGAAATGC+AGG | + | chr1_3:60528840-60528859 | None:intergenic | 35.0% | |
| TGAGTTTAATTCACTATGGC+AGG | - | chr1_3:60528862-60528881 | Msa0130350:CDS | 35.0% | |
| ATTAATCTACTACTCACAGC+AGG | + | chr1_3:60528935-60528954 | None:intergenic | 35.0% | |
| ! | AGCACAAACTTTTATTGCTG+GGG | - | chr1_3:60529222-60529241 | Msa0130350:intron | 35.0% |
| GTCAAAGGACTCATAACAAT+TGG | + | chr1_3:60529274-60529293 | None:intergenic | 35.0% | |
| GTATTCTACTCACAAGTCAA+AGG | + | chr1_3:60529289-60529308 | None:intergenic | 35.0% | |
| GCTAAAACCTTTGCATTCAA+AGG | + | chr1_3:60529420-60529439 | None:intergenic | 35.0% | |
| TATATGTGCATCTGTATGCA+TGG | - | chr1_3:60529442-60529461 | Msa0130350:intron | 35.0% | |
| TGCTTAGTGGAAGTAACAAG+TGG | + | chr1_3:60526807-60526826 | None:intergenic | 40.0% | |
| GCAATCCAATGAATGCTTAG+TGG | + | chr1_3:60526820-60526839 | None:intergenic | 40.0% | |
| TGGAGCAAGATGATTGTTGA+GGG | + | chr1_3:60526894-60526913 | None:intergenic | 40.0% | |
| TTGGAGCAAGATGATTGTTG+AGG | + | chr1_3:60526895-60526914 | None:intergenic | 40.0% | |
| !! | ATGGTGGTACTTCCACTTTT+GGG | - | chr1_3:60527074-60527093 | Msa0130350:intron | 40.0% |
| GATATGGTAAGAAGGAGTAG+AGG | + | chr1_3:60527128-60527147 | None:intergenic | 40.0% | |
| ! | TACTGGTGGATATGGTAAGA+AGG | + | chr1_3:60527136-60527155 | None:intergenic | 40.0% |
| AAATGTGCGAAGCACATAGT+AGG | + | chr1_3:60527383-60527402 | None:intergenic | 40.0% | |
| ACAACATCTGCCTAAAAGAG+AGG | + | chr1_3:60527532-60527551 | None:intergenic | 40.0% | |
| GCAGTATTTAGTTGGATCAC+TGG | - | chr1_3:60527571-60527590 | Msa0130350:intron | 40.0% | |
| TCTTCTGCTGCACATGTTAT+TGG | - | chr1_3:60527598-60527617 | Msa0130350:intron | 40.0% | |
| CTTCTGCTGCACATGTTATT+GGG | - | chr1_3:60527599-60527618 | Msa0130350:intron | 40.0% | |
| TTATTGGGAACGTCTTTGCT+CGG | - | chr1_3:60527614-60527633 | Msa0130350:intron | 40.0% | |
| CCAGTTTCACAGTTTCAACT+AGG | + | chr1_3:60527823-60527842 | None:intergenic | 40.0% | |
| CCTAGTTGAAACTGTGAAAC+TGG | - | chr1_3:60527820-60527839 | Msa0130350:intron | 40.0% | |
| TAGTACAGAAGCCTAACTCT+TGG | + | chr1_3:60527859-60527878 | None:intergenic | 40.0% | |
| GCCGAAGATACAAATCTATG+AGG | - | chr1_3:60527897-60527916 | Msa0130350:intron | 40.0% | |
| CCTGAAGATTACTATTTCCG+CGG | + | chr1_3:60527927-60527946 | None:intergenic | 40.0% | |
| GTTCTCAGAACTTCTGATGA+TGG | - | chr1_3:60528258-60528277 | Msa0130350:intron | 40.0% | |
| !! | TCAGAACTTCTGATGATGGT+TGG | - | chr1_3:60528262-60528281 | Msa0130350:intron | 40.0% |
| !! | CTTCTGATGATGGTTGGAAT+TGG | - | chr1_3:60528268-60528287 | Msa0130350:intron | 40.0% |
| CATTGCAATCATCAGTATGG+AGG | + | chr1_3:60528346-60528365 | None:intergenic | 40.0% | |
| GTATTGGAAGCAACACAATC+TGG | + | chr1_3:60528465-60528484 | None:intergenic | 40.0% | |
| ATCACTTTCTCTCCAACCAA+AGG | + | chr1_3:60528493-60528512 | None:intergenic | 40.0% | |
| !! | TTGGCTTTCTGGATTAGCAT+GGG | - | chr1_3:60528630-60528649 | Msa0130350:CDS | 40.0% |
| AATGCTCCCTTTGAATGCAA+AGG | - | chr1_3:60529410-60529429 | Msa0130350:intron | 40.0% | |
| GATGATGTAGGAGACAGAAA+TGG | + | chr1_3:60529476-60529495 | None:intergenic | 40.0% | |
| TGCATGCTAAATCCTGATAC+TGG | - | chr1_3:60529605-60529624 | Msa0130350:CDS | 40.0% | |
| TCATCACTTGAACCAGTATC+AGG | + | chr1_3:60529620-60529639 | None:intergenic | 40.0% | |
| TGGTTCAAGTGATGAAGACT+TGG | - | chr1_3:60529625-60529644 | Msa0130350:CDS | 40.0% | |
| TTCAAGTGATGAAGACTTGG+AGG | - | chr1_3:60529628-60529647 | Msa0130350:CDS | 40.0% | |
| !! | GATGGTGGTACTTCCACTTT+TGG | - | chr1_3:60527073-60527092 | Msa0130350:intron | 45.0% |
| TCTGAAAGCTGACCCAAAAG+TGG | + | chr1_3:60527089-60527108 | None:intergenic | 45.0% | |
| GGTCAGCTTTCAGATGAACA+CGG | - | chr1_3:60527095-60527114 | Msa0130350:intron | 45.0% | |
| GAAACTGTGAAACTGGATCC+CGG | - | chr1_3:60527827-60527846 | Msa0130350:intron | 45.0% | |
| ! | CCTAACTCTTGGTTCTTTCC+GGG | + | chr1_3:60527848-60527867 | None:intergenic | 45.0% |
| ! | GCCTAACTCTTGGTTCTTTC+CGG | + | chr1_3:60527849-60527868 | None:intergenic | 45.0% |
| CAAATCTATGAGGAATGCCG+CGG | - | chr1_3:60527907-60527926 | Msa0130350:CDS | 45.0% | |
| CCGCGGAAATAGTAATCTTC+AGG | - | chr1_3:60527924-60527943 | Msa0130350:CDS | 45.0% | |
| CAGTCATACATTAAGAGGCG+TGG | - | chr1_3:60528019-60528038 | Msa0130350:intron | 45.0% | |
| CAGCAAAACACTGTGTATGC+CGG | + | chr1_3:60528078-60528097 | None:intergenic | 45.0% | |
| !! | CTTGGCTTTCTGGATTAGCA+TGG | - | chr1_3:60528629-60528648 | Msa0130350:CDS | 45.0% |
| CTATGGCAGGTACCATACTT+AGG | - | chr1_3:60528875-60528894 | Msa0130350:CDS | 45.0% | |
| CCAAATGAGCCACCTAAGTA+TGG | + | chr1_3:60528890-60528909 | None:intergenic | 45.0% | |
| CCATACTTAGGTGGCTCATT+TGG | - | chr1_3:60528887-60528906 | Msa0130350:CDS | 45.0% | |
| TACTCACAGCAGGTTTCTCA+AGG | + | chr1_3:60528925-60528944 | None:intergenic | 45.0% | |
| AGCATCAAGCTCAACCAATC+AGG | - | chr1_3:60529070-60529089 | Msa0130350:CDS | 45.0% | |
| GCTGGGGCAAATTCAATATC+TGG | - | chr1_3:60529238-60529257 | Msa0130350:intron | 45.0% | |
| ! | AATTCAGAAGCGGGTCTTGT+TGG | + | chr1_3:60529658-60529677 | None:intergenic | 45.0% |
| ! | GGAGTGGATTCTTTGAGCTG+AGG | - | chr1_3:60526773-60526792 | Msa0130350:CDS | 50.0% |
| CTGCATTTCTGTCGCGTATG+TGG | - | chr1_3:60527432-60527451 | Msa0130350:intron | 50.0% | |
| TTTCTGTCGCGTATGTGGTG+AGG | - | chr1_3:60527437-60527456 | Msa0130350:intron | 50.0% | |
| CCCGGAAAGAACCAAGAGTT+AGG | - | chr1_3:60527845-60527864 | Msa0130350:intron | 50.0% | |
| ! | CGGCATACACAGTGTTTTGC+TGG | - | chr1_3:60528076-60528095 | Msa0130350:intron | 50.0% |
| ! | TTGGTGTAGGCTTGGCTTTC+TGG | - | chr1_3:60528619-60528638 | Msa0130350:CDS | 50.0% |
| !! | TGGATTAGCATGGGCACCTT+GGG | - | chr1_3:60528639-60528658 | Msa0130350:CDS | 50.0% |
| TGGCAGGTACCATACTTAGG+TGG | - | chr1_3:60528878-60528897 | Msa0130350:CDS | 50.0% | |
| !! | CTGGATTAGCATGGGCACCT+TGG | - | chr1_3:60528638-60528657 | Msa0130350:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 60526763 | 60529685 | 60526763 | ID=Msa0130350;Name=Msa0130350 |
| chr1_3 | mRNA | 60526763 | 60529685 | 60526763 | ID=Msa0130350-mRNA-1;Parent=Msa0130350;Name=Msa0130350-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0|1|1|1|14|0|442 |
| chr1_3 | exon | 60529503 | 60529685 | 60529503 | ID=Msa0130350-mRNA-1:exon:20002;Parent=Msa0130350-mRNA-1 |
| chr1_3 | exon | 60529281 | 60529392 | 60529281 | ID=Msa0130350-mRNA-1:exon:20001;Parent=Msa0130350-mRNA-1 |
| chr1_3 | exon | 60528995 | 60529107 | 60528995 | ID=Msa0130350-mRNA-1:exon:20000;Parent=Msa0130350-mRNA-1 |
| chr1_3 | exon | 60528785 | 60528907 | 60528785 | ID=Msa0130350-mRNA-1:exon:19999;Parent=Msa0130350-mRNA-1 |
| chr1_3 | exon | 60528503 | 60528675 | 60528503 | ID=Msa0130350-mRNA-1:exon:19998;Parent=Msa0130350-mRNA-1 |
| chr1_3 | exon | 60528351 | 60528426 | 60528351 | ID=Msa0130350-mRNA-1:exon:19997;Parent=Msa0130350-mRNA-1 |
| chr1_3 | exon | 60528142 | 60528228 | 60528142 | ID=Msa0130350-mRNA-1:exon:19996;Parent=Msa0130350-mRNA-1 |
| chr1_3 | exon | 60527902 | 60527982 | 60527902 | ID=Msa0130350-mRNA-1:exon:19995;Parent=Msa0130350-mRNA-1 |
| chr1_3 | exon | 60527788 | 60527820 | 60527788 | ID=Msa0130350-mRNA-1:exon:19994;Parent=Msa0130350-mRNA-1 |
| chr1_3 | exon | 60527511 | 60527564 | 60527511 | ID=Msa0130350-mRNA-1:exon:19993;Parent=Msa0130350-mRNA-1 |
| chr1_3 | exon | 60527357 | 60527398 | 60527357 | ID=Msa0130350-mRNA-1:exon:19992;Parent=Msa0130350-mRNA-1 |
| chr1_3 | exon | 60527153 | 60527231 | 60527153 | ID=Msa0130350-mRNA-1:exon:19991;Parent=Msa0130350-mRNA-1 |
| chr1_3 | exon | 60526985 | 60527055 | 60526985 | ID=Msa0130350-mRNA-1:exon:19990;Parent=Msa0130350-mRNA-1 |
| chr1_3 | exon | 60526763 | 60526864 | 60526763 | ID=Msa0130350-mRNA-1:exon:19989;Parent=Msa0130350-mRNA-1 |
| chr1_3 | CDS | 60529503 | 60529685 | 60529503 | ID=Msa0130350-mRNA-1:cds;Parent=Msa0130350-mRNA-1 |
| chr1_3 | CDS | 60529281 | 60529392 | 60529281 | ID=Msa0130350-mRNA-1:cds;Parent=Msa0130350-mRNA-1 |
| chr1_3 | CDS | 60528995 | 60529107 | 60528995 | ID=Msa0130350-mRNA-1:cds;Parent=Msa0130350-mRNA-1 |
| chr1_3 | CDS | 60528785 | 60528907 | 60528785 | ID=Msa0130350-mRNA-1:cds;Parent=Msa0130350-mRNA-1 |
| chr1_3 | CDS | 60528503 | 60528675 | 60528503 | ID=Msa0130350-mRNA-1:cds;Parent=Msa0130350-mRNA-1 |
| chr1_3 | CDS | 60528351 | 60528426 | 60528351 | ID=Msa0130350-mRNA-1:cds;Parent=Msa0130350-mRNA-1 |
| chr1_3 | CDS | 60528142 | 60528228 | 60528142 | ID=Msa0130350-mRNA-1:cds;Parent=Msa0130350-mRNA-1 |
| chr1_3 | CDS | 60527902 | 60527982 | 60527902 | ID=Msa0130350-mRNA-1:cds;Parent=Msa0130350-mRNA-1 |
| chr1_3 | CDS | 60527788 | 60527820 | 60527788 | ID=Msa0130350-mRNA-1:cds;Parent=Msa0130350-mRNA-1 |
| chr1_3 | CDS | 60527511 | 60527564 | 60527511 | ID=Msa0130350-mRNA-1:cds;Parent=Msa0130350-mRNA-1 |
| chr1_3 | CDS | 60527357 | 60527398 | 60527357 | ID=Msa0130350-mRNA-1:cds;Parent=Msa0130350-mRNA-1 |
| chr1_3 | CDS | 60527153 | 60527231 | 60527153 | ID=Msa0130350-mRNA-1:cds;Parent=Msa0130350-mRNA-1 |
| chr1_3 | CDS | 60526985 | 60527055 | 60526985 | ID=Msa0130350-mRNA-1:cds;Parent=Msa0130350-mRNA-1 |
| chr1_3 | CDS | 60526763 | 60526864 | 60526763 | ID=Msa0130350-mRNA-1:cds;Parent=Msa0130350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
