AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1152330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1152330 MtrunA17_Chr7g0242431 86.429 280 38 0 1 280 1 280 0.0 511
Msa1152330 MtrunA17_Chr7g0242401 85.393 267 39 0 14 280 15 281 1.01e-174 483
Msa1152330 MtrunA17_Chr7g0242411 85.944 249 30 2 32 280 2 245 1.30e-159 443
Msa1152330 MtrunA17_Chr4g0006731 67.331 251 80 2 31 279 5 255 6.15e-125 357
Msa1152330 MtrunA17_Chr7g0242451 68.000 250 77 3 31 279 5 252 2.24e-123 352
Msa1152330 MtrunA17_Chr7g0242391 66.008 253 81 3 32 279 2 254 4.24e-120 344
Msa1152330 MtrunA17_Chr3g0113401 58.893 253 102 2 29 279 3 255 6.15e-111 320
Msa1152330 MtrunA17_Chr7g0242461 61.506 239 90 2 32 269 6 243 5.13e-106 308
Msa1152330 MtrunA17_Chr7g0242441 62.753 247 30 2 30 276 1 185 2.05e-102 296
Msa1152330 MtrunA17_Chr2g0283421 35.071 211 129 4 31 233 4 214 1.79e-41 143
Msa1152330 MtrunA17_Chr2g0283411 34.434 212 129 4 32 233 4 215 2.33e-41 142
Msa1152330 MtrunA17_Chr4g0059001 31.100 209 133 4 54 256 54 257 1.32e-28 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1152330 AT3G11210.1 58.964 251 101 2 31 279 5 255 1.92e-111 322
Msa1152330 AT2G38180.1 60.262 229 81 4 32 257 6 227 3.44e-99 293
Msa1152330 AT5G45920.1 39.336 211 121 4 30 233 1 211 7.76e-47 157
Msa1152330 AT5G45920.4 39.336 211 121 4 30 233 1 211 7.76e-47 157
Msa1152330 AT5G62930.1 34.914 232 140 4 32 256 2 229 4.27e-46 155
Msa1152330 AT5G62930.2 34.599 237 144 4 27 256 23 255 5.92e-46 155
Msa1152330 AT5G45920.2 39.572 187 106 4 30 209 1 187 4.99e-40 138
Msa1152330 AT5G45920.3 39.572 187 106 4 30 209 1 187 4.99e-40 138
Msa1152330 AT5G62930.3 30.682 176 107 5 94 263 7 173 5.24e-25 99.0

Find 68 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAAAGGATTCTATGAATT+TGG 0.116655 7_4:+37674609 None:intergenic
CTATTTCAACTCAGAAATTA+TGG 0.174297 7_4:-37676391 Msa1152330:exon
AAGTTAATGCCAGCTGAATT+TGG 0.274855 7_4:-37674735 Msa1152330:CDS
AATGAGCTCAGTGATGAATT+TGG 0.285385 7_4:-37675086 Msa1152330:intron
AAGGCGTGCTGTGCAAGTTT+TGG 0.302736 7_4:-37675946 Msa1152330:CDS
TATGATATGGTTTCTCTTGA+TGG 0.317939 7_4:-37674699 Msa1152330:CDS
AGAAGATTCACCTTATGATA+TGG 0.335446 7_4:-37674712 Msa1152330:CDS
CGATCAACGAGGCACAAATT+AGG 0.337436 7_4:-37675209 Msa1152330:CDS
AATATATTCAGAAGCGTGTT+TGG 0.360952 7_4:-37675033 Msa1152330:CDS
TGGTCCTCATGTACCATTGC+AGG 0.370383 7_4:-37675615 Msa1152330:CDS
AGGCCTAAAATTGTGTTGTT+TGG 0.380075 7_4:-37676208 Msa1152330:CDS
GTTCAATACAGTTGCTATGA+AGG 0.383262 7_4:-37676175 Msa1152330:CDS
TATTTCAACTCAGAAATTAT+GGG 0.393187 7_4:-37676390 Msa1152330:exon
GAAGATTGCTACTCATATAA+TGG 0.403964 7_4:-37675573 Msa1152330:intron
ATACAGTTGCTATGAAGGTT+GGG 0.406406 7_4:-37676170 Msa1152330:CDS
AGTGGGAACCAAGTCTATAT+TGG 0.407643 7_4:-37674758 Msa1152330:CDS
GGACCAAGGCCACTTGGATA+TGG 0.410264 7_4:+37675632 None:intergenic
CGTCCATATCCAAGTGGCCT+TGG 0.417610 7_4:-37675635 Msa1152330:CDS
CACTCTACATCTTGAGGAAA+AGG 0.437938 7_4:+37674648 None:intergenic
TGCCATTGAGCAACCATCAT+TGG 0.437939 7_4:-37675690 Msa1152330:CDS
GTGTCGTGAGATGAAAATAA+AGG 0.443191 7_4:-37675006 Msa1152330:CDS
ATGAGCTCAGTGATGAATTT+GGG 0.445759 7_4:-37675085 Msa1152330:intron
TAATAAAATCAATTTACAAA+AGG 0.457557 7_4:+37674594 None:intergenic
AATACAGTTGCTATGAAGGT+TGG 0.465220 7_4:-37676171 Msa1152330:CDS
ACCTTTCAATCCTCTCTCTC+TGG 0.465769 7_4:-37676354 Msa1152330:intron
CTAATTTGTGCCTCGTTGAT+CGG 0.468483 7_4:+37675210 None:intergenic
CTTGCATGTTCAATAATACA+TGG 0.469501 7_4:-37674528 Msa1152330:three_prime_UTR
TCAAGAGAAACCATATCATA+AGG 0.483799 7_4:+37674702 None:intergenic
ATGATATGGTTTCTCTTGAT+GGG 0.487292 7_4:-37674698 Msa1152330:CDS
GATATGCTGCTTGGAATTCA+AGG 0.495898 7_4:-37675965 Msa1152330:CDS
TTCTCACTTGTACGCTCGTA+AGG 0.496236 7_4:-37676137 Msa1152330:intron
CAATTCAGAAAAGAGATGAT+TGG 0.498393 7_4:-37674965 Msa1152330:CDS
CACCAATGATGGTTGCTCAA+TGG 0.505270 7_4:+37675688 None:intergenic
GGGTTCTTCCATTGCACAGT+GGG 0.510655 7_4:-37676243 Msa1152330:CDS
AGGAATACATACAAAATATG+AGG 0.511040 7_4:-37675595 Msa1152330:CDS
TTGGTGATTGTGTACTTTGG+TGG 0.528440 7_4:-37675671 Msa1152330:CDS
AAGTACACAATCACCAATGA+TGG 0.528971 7_4:+37675677 None:intergenic
GAATCTTCTCCAAATTCAGC+TGG 0.530268 7_4:+37674726 None:intergenic
AAGGTTGGGGAGCAATAAAG+AGG 0.532708 7_4:-37676264 Msa1152330:CDS
ACATGAGGACCAAGGCCACT+TGG 0.533170 7_4:+37675626 None:intergenic
GTTCTTCCATTGCACAGTGG+GGG 0.534821 7_4:-37676241 Msa1152330:CDS
ACCAGAGAGAGAGGATTGAA+AGG 0.536372 7_4:+37676353 None:intergenic
TAATCCGAGTCTTATGTGAC+AGG 0.539331 7_4:+37675250 None:intergenic
GAATTTGGAATAATATATCA+AGG 0.546411 7_4:+37674624 None:intergenic
TCATTGGTGATTGTGTACTT+TGG 0.556007 7_4:-37675674 Msa1152330:CDS
TACAGTTGCTATGAAGGTTG+GGG 0.558888 7_4:-37676169 Msa1152330:CDS
GAGAAAGTTACCAGAGAGAG+AGG 0.562172 7_4:+37676344 None:intergenic
CAAGGCCACTCTACATCTTG+AGG 0.564026 7_4:+37674642 None:intergenic
AATTGCAGACCACATATCAA+TGG 0.566695 7_4:+37674983 None:intergenic
ATTAACTTCCAATATAGACT+TGG 0.567442 7_4:+37674750 None:intergenic
TGTCATAAAAGAAGCAGAGT+GGG 0.567830 7_4:-37674775 Msa1152330:CDS
AAATAAAGGCCATTGATATG+TGG 0.571676 7_4:-37674992 Msa1152330:CDS
GGAGTTCATCTATCAACTGA+GGG 0.572805 7_4:-37674828 Msa1152330:CDS
ATTTGTGCCTCGTTGATCGG+AGG 0.599779 7_4:+37675213 None:intergenic
ATCTTGAGGAAAAGGCACAT+TGG 0.602253 7_4:+37674656 None:intergenic
TATTCCTGCAATGGTACATG+AGG 0.621940 7_4:+37675611 None:intergenic
GGGGAGTGAAATATTAACAA+AGG 0.628715 7_4:-37674808 Msa1152330:CDS
TTGCATGTTCAATAATACAT+GGG 0.642172 7_4:-37674527 Msa1152330:three_prime_UTR
GGTTCTTCCATTGCACAGTG+GGG 0.662401 7_4:-37676242 Msa1152330:CDS
AGAGCCTGTCACATAAGACT+CGG 0.665508 7_4:-37675254 Msa1152330:CDS
ATGTCATAAAAGAAGCAGAG+TGG 0.667998 7_4:-37674776 Msa1152330:CDS
TGGAGTTCATCTATCAACTG+AGG 0.669042 7_4:-37674829 Msa1152330:CDS
AGGGTTCTTCCATTGCACAG+TGG 0.698129 7_4:-37676244 Msa1152330:CDS
TGTATTCGTCCATATCCAAG+TGG 0.698167 7_4:-37675641 Msa1152330:CDS
AGGTTGGGGAGCAATAAAGA+GGG 0.711573 7_4:-37676263 Msa1152330:CDS
GAGTTCATCTATCAACTGAG+GGG 0.728386 7_4:-37674827 Msa1152330:CDS
CAGTAGTCCTCCGATCAACG+AGG 0.731081 7_4:-37675220 Msa1152330:CDS
GCAATGGTACATGAGGACCA+AGG 0.776215 7_4:+37675618 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTAATTATGATAATAAA+TGG + chr7_4:37675641-37675660 None:intergenic 10.0%
!!! AAAGATTATACATTTTTTAA+GGG + chr7_4:37675817-37675836 None:intergenic 10.0%
!!! AATTTAAAACATTTTAGTTT+AGG + chr7_4:37676080-37676099 None:intergenic 10.0%
!! TAATAAAATCAATTTACAAA+AGG + chr7_4:37676386-37676405 None:intergenic 10.0%
!! AAAGTAATTATGATAATAAA+TGG + chr7_4:37675641-37675660 None:intergenic 10.0%
!!! AAAGATTATACATTTTTTAA+GGG + chr7_4:37675817-37675836 None:intergenic 10.0%
!!! AATTTAAAACATTTTAGTTT+AGG + chr7_4:37676080-37676099 None:intergenic 10.0%
!! TAATAAAATCAATTTACAAA+AGG + chr7_4:37676386-37676405 None:intergenic 10.0%
!! AATATGATTGTATTGAAAAA+TGG + chr7_4:37674687-37674706 None:intergenic 15.0%
!!! TTTTCAATACAATCATATTA+TGG - chr7_4:37674688-37674707 Msa1152330:CDS 15.0%
!!! GTTATTTTGATTTCAAATTT+CGG - chr7_4:37675439-37675458 Msa1152330:intron 15.0%
!!! CAAAGATTATACATTTTTTA+AGG + chr7_4:37675818-37675837 None:intergenic 15.0%
!! AGATATATCATAGAATAATT+AGG + chr7_4:37675853-37675872 None:intergenic 15.0%
!! TCAATAATAATTTAATTACG+TGG - chr7_4:37676106-37676125 Msa1152330:intron 15.0%
!! AATATGATTGTATTGAAAAA+TGG + chr7_4:37674687-37674706 None:intergenic 15.0%
!!! TTTTCAATACAATCATATTA+TGG - chr7_4:37674688-37674707 Msa1152330:CDS 15.0%
!!! GTTATTTTGATTTCAAATTT+CGG - chr7_4:37675439-37675458 Msa1152330:intron 15.0%
!!! CAAAGATTATACATTTTTTA+AGG + chr7_4:37675818-37675837 None:intergenic 15.0%
!! AGATATATCATAGAATAATT+AGG + chr7_4:37675853-37675872 None:intergenic 15.0%
!! TCAATAATAATTTAATTACG+TGG - chr7_4:37676106-37676125 Msa1152330:intron 15.0%
!! TATTTCAACTCAGAAATTAT+GGG - chr7_4:37674587-37674606 Msa1152330:three_prime_UTR 20.0%
!! ATTACGGTATTAATAATTAG+AGG + chr7_4:37674880-37674899 None:intergenic 20.0%
!!! TTAATACCGTAATGTTTTAT+TGG - chr7_4:37674887-37674906 Msa1152330:intron 20.0%
!!! TTTGGATAAAATTTTTCCTA+AGG - chr7_4:37675049-37675068 Msa1152330:CDS 20.0%
!! AAATCAAAATAATCACATCA+TGG + chr7_4:37675213-37675232 None:intergenic 20.0%
!! AGTATGAAACTTAATTATTC+AGG + chr7_4:37675543-37675562 None:intergenic 20.0%
!!! GAATTTGGAATAATATATCA+AGG + chr7_4:37676356-37676375 None:intergenic 20.0%
!! TATTTCAACTCAGAAATTAT+GGG - chr7_4:37674587-37674606 Msa1152330:three_prime_UTR 20.0%
!! ATTACGGTATTAATAATTAG+AGG + chr7_4:37674880-37674899 None:intergenic 20.0%
!!! TTAATACCGTAATGTTTTAT+TGG - chr7_4:37674887-37674906 Msa1152330:intron 20.0%
!!! TTTGGATAAAATTTTTCCTA+AGG - chr7_4:37675049-37675068 Msa1152330:CDS 20.0%
!! AAATCAAAATAATCACATCA+TGG + chr7_4:37675213-37675232 None:intergenic 20.0%
!! AGTATGAAACTTAATTATTC+AGG + chr7_4:37675543-37675562 None:intergenic 20.0%
!!! GAATTTGGAATAATATATCA+AGG + chr7_4:37676356-37676375 None:intergenic 20.0%
! CTATTTCAACTCAGAAATTA+TGG - chr7_4:37674586-37674605 Msa1152330:three_prime_UTR 25.0%
! ATACAATCATATTATGGTGA+AGG - chr7_4:37674694-37674713 Msa1152330:CDS 25.0%
! ACAGAACCAATAAAACATTA+CGG + chr7_4:37674896-37674915 None:intergenic 25.0%
! GTCATTATATTCAATACCTT+AGG + chr7_4:37675068-37675087 None:intergenic 25.0%
! TTGAATATAATGACTGATGA+AGG - chr7_4:37675074-37675093 Msa1152330:CDS 25.0%
! TTGATCCAAAAAATTTCCTA+AGG - chr7_4:37675103-37675122 Msa1152330:intron 25.0%
!!! ATATGCCTTAGGAAATTTTT+TGG + chr7_4:37675111-37675130 None:intergenic 25.0%
! AGGAATACATACAAAATATG+AGG - chr7_4:37675382-37675401 Msa1152330:intron 25.0%
! TTTAACACAATTGAAATACG+TGG - chr7_4:37675476-37675495 Msa1152330:intron 25.0%
!!! TACATTTTTTAAGGGAACAA+AGG + chr7_4:37675809-37675828 None:intergenic 25.0%
!! GTTTGATTATTTCTTAGTGA+TGG - chr7_4:37676128-37676147 Msa1152330:intron 25.0%
! ATTAACTTCCAATATAGACT+TGG + chr7_4:37676230-37676249 None:intergenic 25.0%
! ACAAAAGGATTCTATGAATT+TGG + chr7_4:37676371-37676390 None:intergenic 25.0%
!!! ATGTTTTTCGAAAGGAAATA+TGG - chr7_4:37676415-37676434 Msa1152330:five_prime_UTR 25.0%
! TTGCATGTTCAATAATACAT+GGG - chr7_4:37676450-37676469 Msa1152330:five_prime_UTR 25.0%
! CTATTTCAACTCAGAAATTA+TGG - chr7_4:37674586-37674605 Msa1152330:three_prime_UTR 25.0%
! ATACAATCATATTATGGTGA+AGG - chr7_4:37674694-37674713 Msa1152330:CDS 25.0%
! ACAGAACCAATAAAACATTA+CGG + chr7_4:37674896-37674915 None:intergenic 25.0%
! GTCATTATATTCAATACCTT+AGG + chr7_4:37675068-37675087 None:intergenic 25.0%
! TTGAATATAATGACTGATGA+AGG - chr7_4:37675074-37675093 Msa1152330:CDS 25.0%
! TTGATCCAAAAAATTTCCTA+AGG - chr7_4:37675103-37675122 Msa1152330:intron 25.0%
!!! ATATGCCTTAGGAAATTTTT+TGG + chr7_4:37675111-37675130 None:intergenic 25.0%
! AGGAATACATACAAAATATG+AGG - chr7_4:37675382-37675401 Msa1152330:intron 25.0%
! TTTAACACAATTGAAATACG+TGG - chr7_4:37675476-37675495 Msa1152330:intron 25.0%
!!! TACATTTTTTAAGGGAACAA+AGG + chr7_4:37675809-37675828 None:intergenic 25.0%
!! GTTTGATTATTTCTTAGTGA+TGG - chr7_4:37676128-37676147 Msa1152330:intron 25.0%
! ATTAACTTCCAATATAGACT+TGG + chr7_4:37676230-37676249 None:intergenic 25.0%
! ACAAAAGGATTCTATGAATT+TGG + chr7_4:37676371-37676390 None:intergenic 25.0%
!!! ATGTTTTTCGAAAGGAAATA+TGG - chr7_4:37676415-37676434 Msa1152330:five_prime_UTR 25.0%
AATCATATTATGGTGAAGGT+TGG - chr7_4:37674698-37674717 Msa1152330:CDS 30.0%
ATCATATTATGGTGAAGGTT+GGG - chr7_4:37674699-37674718 Msa1152330:CDS 30.0%
! GAACCAAACAACACAATTTT+AGG + chr7_4:37674775-37674794 None:intergenic 30.0%
!! ACCTAACATTGATTTGATGT+AGG - chr7_4:37674971-37674990 Msa1152330:CDS 30.0%
ACTTATGTATATGCTGCAAA+TGG + chr7_4:37675159-37675178 None:intergenic 30.0%
! TTTTGTATGTATTCCTGCAA+TGG + chr7_4:37675378-37675397 None:intergenic 30.0%
GAAGATTGCTACTCATATAA+TGG - chr7_4:37675404-37675423 Msa1152330:intron 30.0%
! AATATATTCAGAAGCGTGTT+TGG - chr7_4:37675944-37675963 Msa1152330:CDS 30.0%
AAATAAAGGCCATTGATATG+TGG - chr7_4:37675985-37676004 Msa1152330:CDS 30.0%
CAATTCAGAAAAGAGATGAT+TGG - chr7_4:37676012-37676031 Msa1152330:intron 30.0%
ATGTCTGTTTCATGTAAGTA+TGG - chr7_4:37676039-37676058 Msa1152330:intron 30.0%
AGAAGATTCACCTTATGATA+TGG - chr7_4:37676265-37676284 Msa1152330:intron 30.0%
TCAAGAGAAACCATATCATA+AGG + chr7_4:37676278-37676297 None:intergenic 30.0%
TATGATATGGTTTCTCTTGA+TGG - chr7_4:37676278-37676297 Msa1152330:intron 30.0%
ATGATATGGTTTCTCTTGAT+GGG - chr7_4:37676279-37676298 Msa1152330:intron 30.0%
!! ATGCTTCAATGTTTTTCGAA+AGG - chr7_4:37676407-37676426 Msa1152330:five_prime_UTR 30.0%
CTTGCATGTTCAATAATACA+TGG - chr7_4:37676449-37676468 Msa1152330:five_prime_UTR 30.0%
TGCATGTTCAATAATACATG+GGG - chr7_4:37676451-37676470 Msa1152330:five_prime_UTR 30.0%
AATCATATTATGGTGAAGGT+TGG - chr7_4:37674698-37674717 Msa1152330:CDS 30.0%
ATCATATTATGGTGAAGGTT+GGG - chr7_4:37674699-37674718 Msa1152330:CDS 30.0%
! GAACCAAACAACACAATTTT+AGG + chr7_4:37674775-37674794 None:intergenic 30.0%
!! ACCTAACATTGATTTGATGT+AGG - chr7_4:37674971-37674990 Msa1152330:CDS 30.0%
ACTTATGTATATGCTGCAAA+TGG + chr7_4:37675159-37675178 None:intergenic 30.0%
! TTTTGTATGTATTCCTGCAA+TGG + chr7_4:37675378-37675397 None:intergenic 30.0%
GAAGATTGCTACTCATATAA+TGG - chr7_4:37675404-37675423 Msa1152330:intron 30.0%
! AATATATTCAGAAGCGTGTT+TGG - chr7_4:37675944-37675963 Msa1152330:CDS 30.0%
AAATAAAGGCCATTGATATG+TGG - chr7_4:37675985-37676004 Msa1152330:CDS 30.0%
CAATTCAGAAAAGAGATGAT+TGG - chr7_4:37676012-37676031 Msa1152330:intron 30.0%
ATGTCTGTTTCATGTAAGTA+TGG - chr7_4:37676039-37676058 Msa1152330:intron 30.0%
AGAAGATTCACCTTATGATA+TGG - chr7_4:37676265-37676284 Msa1152330:intron 30.0%
TCAAGAGAAACCATATCATA+AGG + chr7_4:37676278-37676297 None:intergenic 30.0%
TATGATATGGTTTCTCTTGA+TGG - chr7_4:37676278-37676297 Msa1152330:intron 30.0%
ATGATATGGTTTCTCTTGAT+GGG - chr7_4:37676279-37676298 Msa1152330:intron 30.0%
!! ATGCTTCAATGTTTTTCGAA+AGG - chr7_4:37676407-37676426 Msa1152330:five_prime_UTR 30.0%
CTTGCATGTTCAATAATACA+TGG - chr7_4:37676449-37676468 Msa1152330:five_prime_UTR 30.0%
TCATATTATGGTGAAGGTTG+GGG - chr7_4:37674700-37674719 Msa1152330:CDS 35.0%
! AGGCCTAAAATTGTGTTGTT+TGG - chr7_4:37674769-37674788 Msa1152330:CDS 35.0%
GTTCAATACAGTTGCTATGA+AGG - chr7_4:37674802-37674821 Msa1152330:CDS 35.0%
AATACAGTTGCTATGAAGGT+TGG - chr7_4:37674806-37674825 Msa1152330:CDS 35.0%
ATACAGTTGCTATGAAGGTT+GGG - chr7_4:37674807-37674826 Msa1152330:CDS 35.0%
!!! TGTTTTATTGGTTCTGTACC+TGG - chr7_4:37674899-37674918 Msa1152330:intron 35.0%
GACAATGCATAATATATGCC+AGG + chr7_4:37674920-37674939 None:intergenic 35.0%
GCCTACATCAAATCAATGTT+AGG + chr7_4:37674975-37674994 None:intergenic 35.0%
!! TGTAGGCTGATATAGTTTTG+CGG - chr7_4:37674988-37675007 Msa1152330:CDS 35.0%
TTGAGGGTAAAATATGCCTT+AGG + chr7_4:37675122-37675141 None:intergenic 35.0%
!! GGTGGTATTACTTAAGTTGA+GGG + chr7_4:37675138-37675157 None:intergenic 35.0%
! TGGTGGTATTACTTAAGTTG+AGG + chr7_4:37675139-37675158 None:intergenic 35.0%
TATGTATATGCTGCAAATGG+TGG + chr7_4:37675156-37675175 None:intergenic 35.0%
AAGTACACAATCACCAATGA+TGG + chr7_4:37675303-37675322 None:intergenic 35.0%
! TCATTGGTGATTGTGTACTT+TGG - chr7_4:37675303-37675322 Msa1152330:intron 35.0%
AATGAGCTCAGTGATGAATT+TGG - chr7_4:37675891-37675910 Msa1152330:intron 35.0%
ATGAGCTCAGTGATGAATTT+GGG - chr7_4:37675892-37675911 Msa1152330:intron 35.0%
GTGTCGTGAGATGAAAATAA+AGG - chr7_4:37675971-37675990 Msa1152330:CDS 35.0%
AATTGCAGACCACATATCAA+TGG + chr7_4:37675997-37676016 None:intergenic 35.0%
GGGGAGTGAAATATTAACAA+AGG - chr7_4:37676169-37676188 Msa1152330:CDS 35.0%
ATGTCATAAAAGAAGCAGAG+TGG - chr7_4:37676201-37676220 Msa1152330:CDS 35.0%
TGTCATAAAAGAAGCAGAGT+GGG - chr7_4:37676202-37676221 Msa1152330:CDS 35.0%
AAGTTAATGCCAGCTGAATT+TGG - chr7_4:37676242-37676261 Msa1152330:CDS 35.0%
GCATGTTCAATAATACATGG+GGG - chr7_4:37676452-37676471 Msa1152330:five_prime_UTR 35.0%
TCATATTATGGTGAAGGTTG+GGG - chr7_4:37674700-37674719 Msa1152330:CDS 35.0%
! AGGCCTAAAATTGTGTTGTT+TGG - chr7_4:37674769-37674788 Msa1152330:CDS 35.0%
GTTCAATACAGTTGCTATGA+AGG - chr7_4:37674802-37674821 Msa1152330:CDS 35.0%
AATACAGTTGCTATGAAGGT+TGG - chr7_4:37674806-37674825 Msa1152330:CDS 35.0%
ATACAGTTGCTATGAAGGTT+GGG - chr7_4:37674807-37674826 Msa1152330:CDS 35.0%
!!! TGTTTTATTGGTTCTGTACC+TGG - chr7_4:37674899-37674918 Msa1152330:intron 35.0%
GACAATGCATAATATATGCC+AGG + chr7_4:37674920-37674939 None:intergenic 35.0%
GCCTACATCAAATCAATGTT+AGG + chr7_4:37674975-37674994 None:intergenic 35.0%
!! TGTAGGCTGATATAGTTTTG+CGG - chr7_4:37674988-37675007 Msa1152330:CDS 35.0%
TTGAGGGTAAAATATGCCTT+AGG + chr7_4:37675122-37675141 None:intergenic 35.0%
!! GGTGGTATTACTTAAGTTGA+GGG + chr7_4:37675138-37675157 None:intergenic 35.0%
! TGGTGGTATTACTTAAGTTG+AGG + chr7_4:37675139-37675158 None:intergenic 35.0%
TATGTATATGCTGCAAATGG+TGG + chr7_4:37675156-37675175 None:intergenic 35.0%
AAGTACACAATCACCAATGA+TGG + chr7_4:37675303-37675322 None:intergenic 35.0%
! TCATTGGTGATTGTGTACTT+TGG - chr7_4:37675303-37675322 Msa1152330:intron 35.0%
AATGAGCTCAGTGATGAATT+TGG - chr7_4:37675891-37675910 Msa1152330:intron 35.0%
ATGAGCTCAGTGATGAATTT+GGG - chr7_4:37675892-37675911 Msa1152330:intron 35.0%
GTGTCGTGAGATGAAAATAA+AGG - chr7_4:37675971-37675990 Msa1152330:CDS 35.0%
AATTGCAGACCACATATCAA+TGG + chr7_4:37675997-37676016 None:intergenic 35.0%
GGGGAGTGAAATATTAACAA+AGG - chr7_4:37676169-37676188 Msa1152330:CDS 35.0%
ATGTCATAAAAGAAGCAGAG+TGG - chr7_4:37676201-37676220 Msa1152330:CDS 35.0%
TGTCATAAAAGAAGCAGAGT+GGG - chr7_4:37676202-37676221 Msa1152330:CDS 35.0%
AAGTTAATGCCAGCTGAATT+TGG - chr7_4:37676242-37676261 Msa1152330:CDS 35.0%
TACAGTTGCTATGAAGGTTG+GGG - chr7_4:37674808-37674827 Msa1152330:CDS 40.0%
! TGAGCTTAGCTCAGTTGATA+TGG + chr7_4:37674942-37674961 None:intergenic 40.0%
!! GTAGGCTGATATAGTTTTGC+GGG - chr7_4:37674989-37675008 Msa1152330:CDS 40.0%
!! TAGGCTGATATAGTTTTGCG+GGG - chr7_4:37674990-37675009 Msa1152330:CDS 40.0%
! GATATGCTGCTTGGAATTCA+AGG - chr7_4:37675012-37675031 Msa1152330:CDS 40.0%
CACCTCAGATACTCTTATAC+TGG - chr7_4:37675247-37675266 Msa1152330:CDS 40.0%
!! GACCAGTATAAGAGTATCTG+AGG + chr7_4:37675252-37675271 None:intergenic 40.0%
! TTGGTGATTGTGTACTTTGG+TGG - chr7_4:37675306-37675325 Msa1152330:intron 40.0%
TGTATTCGTCCATATCCAAG+TGG - chr7_4:37675336-37675355 Msa1152330:intron 40.0%
TATTCCTGCAATGGTACATG+AGG + chr7_4:37675369-37675388 None:intergenic 40.0%
! TAATCCGAGTCTTATGTGAC+AGG + chr7_4:37675730-37675749 None:intergenic 40.0%
! CTAATTTGTGCCTCGTTGAT+CGG + chr7_4:37675770-37675789 None:intergenic 40.0%
TGGAGTTCATCTATCAACTG+AGG - chr7_4:37676148-37676167 Msa1152330:CDS 40.0%
GGAGTTCATCTATCAACTGA+GGG - chr7_4:37676149-37676168 Msa1152330:CDS 40.0%
GAGTTCATCTATCAACTGAG+GGG - chr7_4:37676150-37676169 Msa1152330:CDS 40.0%
AGTGGGAACCAAGTCTATAT+TGG - chr7_4:37676219-37676238 Msa1152330:CDS 40.0%
GAATCTTCTCCAAATTCAGC+TGG + chr7_4:37676254-37676273 None:intergenic 40.0%
! ATCTTGAGGAAAAGGCACAT+TGG + chr7_4:37676324-37676343 None:intergenic 40.0%
CACTCTACATCTTGAGGAAA+AGG + chr7_4:37676332-37676351 None:intergenic 40.0%
! CTTTTCCTCAAGATGTAGAG+TGG - chr7_4:37676330-37676349 Msa1152330:intron 40.0%
TACAGTTGCTATGAAGGTTG+GGG - chr7_4:37674808-37674827 Msa1152330:CDS 40.0%
! TGAGCTTAGCTCAGTTGATA+TGG + chr7_4:37674942-37674961 None:intergenic 40.0%
!! GTAGGCTGATATAGTTTTGC+GGG - chr7_4:37674989-37675008 Msa1152330:CDS 40.0%
!! TAGGCTGATATAGTTTTGCG+GGG - chr7_4:37674990-37675009 Msa1152330:CDS 40.0%
! GATATGCTGCTTGGAATTCA+AGG - chr7_4:37675012-37675031 Msa1152330:CDS 40.0%
CACCTCAGATACTCTTATAC+TGG - chr7_4:37675247-37675266 Msa1152330:CDS 40.0%
!! GACCAGTATAAGAGTATCTG+AGG + chr7_4:37675252-37675271 None:intergenic 40.0%
! TTGGTGATTGTGTACTTTGG+TGG - chr7_4:37675306-37675325 Msa1152330:intron 40.0%
TGTATTCGTCCATATCCAAG+TGG - chr7_4:37675336-37675355 Msa1152330:intron 40.0%
TATTCCTGCAATGGTACATG+AGG + chr7_4:37675369-37675388 None:intergenic 40.0%
! TAATCCGAGTCTTATGTGAC+AGG + chr7_4:37675730-37675749 None:intergenic 40.0%
! CTAATTTGTGCCTCGTTGAT+CGG + chr7_4:37675770-37675789 None:intergenic 40.0%
TGGAGTTCATCTATCAACTG+AGG - chr7_4:37676148-37676167 Msa1152330:CDS 40.0%
GGAGTTCATCTATCAACTGA+GGG - chr7_4:37676149-37676168 Msa1152330:CDS 40.0%
GAGTTCATCTATCAACTGAG+GGG - chr7_4:37676150-37676169 Msa1152330:CDS 40.0%
AGTGGGAACCAAGTCTATAT+TGG - chr7_4:37676219-37676238 Msa1152330:CDS 40.0%
GAATCTTCTCCAAATTCAGC+TGG + chr7_4:37676254-37676273 None:intergenic 40.0%
! ATCTTGAGGAAAAGGCACAT+TGG + chr7_4:37676324-37676343 None:intergenic 40.0%
CACTCTACATCTTGAGGAAA+AGG + chr7_4:37676332-37676351 None:intergenic 40.0%
! CTTTTCCTCAAGATGTAGAG+TGG - chr7_4:37676330-37676349 Msa1152330:intron 40.0%
ACCTTTCAATCCTCTCTCTC+TGG - chr7_4:37674623-37674642 Msa1152330:exon 45.0%
ACCAGAGAGAGAGGATTGAA+AGG + chr7_4:37674627-37674646 None:intergenic 45.0%
GAGAAAGTTACCAGAGAGAG+AGG + chr7_4:37674636-37674655 None:intergenic 45.0%
AAGGTTGGGGAGCAATAAAG+AGG - chr7_4:37674713-37674732 Msa1152330:CDS 45.0%
AGGTTGGGGAGCAATAAAGA+GGG - chr7_4:37674714-37674733 Msa1152330:CDS 45.0%
TTCTCACTTGTACGCTCGTA+AGG - chr7_4:37674840-37674859 Msa1152330:intron 45.0%
TCAACTGAGCTAAGCTCACA+AGG - chr7_4:37674944-37674963 Msa1152330:intron 45.0%
TGCCATTGAGCAACCATCAT+TGG - chr7_4:37675287-37675306 Msa1152330:intron 45.0%
CACCAATGATGGTTGCTCAA+TGG + chr7_4:37675292-37675311 None:intergenic 45.0%
AGAGCCTGTCACATAAGACT+CGG - chr7_4:37675723-37675742 Msa1152330:intron 45.0%
CGATCAACGAGGCACAAATT+AGG - chr7_4:37675768-37675787 Msa1152330:intron 45.0%
ACCTTTCAATCCTCTCTCTC+TGG - chr7_4:37674623-37674642 Msa1152330:exon 45.0%
ACCAGAGAGAGAGGATTGAA+AGG + chr7_4:37674627-37674646 None:intergenic 45.0%
GAGAAAGTTACCAGAGAGAG+AGG + chr7_4:37674636-37674655 None:intergenic 45.0%
AAGGTTGGGGAGCAATAAAG+AGG - chr7_4:37674713-37674732 Msa1152330:CDS 45.0%
AGGTTGGGGAGCAATAAAGA+GGG - chr7_4:37674714-37674733 Msa1152330:CDS 45.0%
TTCTCACTTGTACGCTCGTA+AGG - chr7_4:37674840-37674859 Msa1152330:intron 45.0%
TCAACTGAGCTAAGCTCACA+AGG - chr7_4:37674944-37674963 Msa1152330:intron 45.0%
TGCCATTGAGCAACCATCAT+TGG - chr7_4:37675287-37675306 Msa1152330:intron 45.0%
CACCAATGATGGTTGCTCAA+TGG + chr7_4:37675292-37675311 None:intergenic 45.0%
AGAGCCTGTCACATAAGACT+CGG - chr7_4:37675723-37675742 Msa1152330:intron 45.0%
CGATCAACGAGGCACAAATT+AGG - chr7_4:37675768-37675787 Msa1152330:intron 45.0%
AGGGTTCTTCCATTGCACAG+TGG - chr7_4:37674733-37674752 Msa1152330:CDS 50.0%
GGGTTCTTCCATTGCACAGT+GGG - chr7_4:37674734-37674753 Msa1152330:CDS 50.0%
GGTTCTTCCATTGCACAGTG+GGG - chr7_4:37674735-37674754 Msa1152330:CDS 50.0%
GTTCTTCCATTGCACAGTGG+GGG - chr7_4:37674736-37674755 Msa1152330:CDS 50.0%
! TTTTGCGGGGATATGCTGCT+TGG - chr7_4:37675003-37675022 Msa1152330:CDS 50.0%
! AAGGCGTGCTGTGCAAGTTT+TGG - chr7_4:37675031-37675050 Msa1152330:CDS 50.0%
GCAATGGTACATGAGGACCA+AGG + chr7_4:37675362-37675381 None:intergenic 50.0%
TGGTCCTCATGTACCATTGC+AGG - chr7_4:37675362-37675381 Msa1152330:intron 50.0%
ATTTGTGCCTCGTTGATCGG+AGG + chr7_4:37675767-37675786 None:intergenic 50.0%
CAAGGCCACTCTACATCTTG+AGG + chr7_4:37676338-37676357 None:intergenic 50.0%
AGGGTTCTTCCATTGCACAG+TGG - chr7_4:37674733-37674752 Msa1152330:CDS 50.0%
GGGTTCTTCCATTGCACAGT+GGG - chr7_4:37674734-37674753 Msa1152330:CDS 50.0%
GGTTCTTCCATTGCACAGTG+GGG - chr7_4:37674735-37674754 Msa1152330:CDS 50.0%
GTTCTTCCATTGCACAGTGG+GGG - chr7_4:37674736-37674755 Msa1152330:CDS 50.0%
! TTTTGCGGGGATATGCTGCT+TGG - chr7_4:37675003-37675022 Msa1152330:CDS 50.0%
! AAGGCGTGCTGTGCAAGTTT+TGG - chr7_4:37675031-37675050 Msa1152330:CDS 50.0%
GCAATGGTACATGAGGACCA+AGG + chr7_4:37675362-37675381 None:intergenic 50.0%
TGGTCCTCATGTACCATTGC+AGG - chr7_4:37675362-37675381 Msa1152330:intron 50.0%
ATTTGTGCCTCGTTGATCGG+AGG + chr7_4:37675767-37675786 None:intergenic 50.0%
CAAGGCCACTCTACATCTTG+AGG + chr7_4:37676338-37676357 None:intergenic 50.0%
ATTGCTCCCCCACTGTGCAA+TGG + chr7_4:37674745-37674764 None:intergenic 55.0%
ACAGTGGGGGAGCAATAACG+AGG - chr7_4:37674749-37674768 Msa1152330:CDS 55.0%
CGTCCATATCCAAGTGGCCT+TGG - chr7_4:37675342-37675361 Msa1152330:intron 55.0%
GGACCAAGGCCACTTGGATA+TGG + chr7_4:37675348-37675367 None:intergenic 55.0%
ACATGAGGACCAAGGCCACT+TGG + chr7_4:37675354-37675373 None:intergenic 55.0%
CAGTAGTCCTCCGATCAACG+AGG - chr7_4:37675757-37675776 Msa1152330:intron 55.0%
ATTGCTCCCCCACTGTGCAA+TGG + chr7_4:37674745-37674764 None:intergenic 55.0%
ACAGTGGGGGAGCAATAACG+AGG - chr7_4:37674749-37674768 Msa1152330:CDS 55.0%
CGTCCATATCCAAGTGGCCT+TGG - chr7_4:37675342-37675361 Msa1152330:intron 55.0%
GGACCAAGGCCACTTGGATA+TGG + chr7_4:37675348-37675367 None:intergenic 55.0%
ACATGAGGACCAAGGCCACT+TGG + chr7_4:37675354-37675373 None:intergenic 55.0%
CAGTAGTCCTCCGATCAACG+AGG - chr7_4:37675757-37675776 Msa1152330:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 37674527 37676472 37674527 ID=Msa1152330;Name=Msa1152330
chr7_4 mRNA 37674527 37676472 37674527 ID=Msa1152330-mRNA-1;Parent=Msa1152330;Name=Msa1152330-mRNA-1;_AED=0.16;_eAED=0.16;_QI=78|1|0.71|1|1|1|7|114|280
chr7_4 exon 37674527 37674854 37674527 ID=Msa1152330-mRNA-1:exon:8973;Parent=Msa1152330-mRNA-1
chr7_4 exon 37674948 37675097 37674948 ID=Msa1152330-mRNA-1:exon:8972;Parent=Msa1152330-mRNA-1
chr7_4 exon 37675201 37675274 37675201 ID=Msa1152330-mRNA-1:exon:8971;Parent=Msa1152330-mRNA-1
chr7_4 exon 37675574 37675714 37675574 ID=Msa1152330-mRNA-1:exon:8970;Parent=Msa1152330-mRNA-1
chr7_4 exon 37675929 37676006 37675929 ID=Msa1152330-mRNA-1:exon:8969;Parent=Msa1152330-mRNA-1
chr7_4 exon 37676138 37676283 37676138 ID=Msa1152330-mRNA-1:exon:8968;Parent=Msa1152330-mRNA-1
chr7_4 exon 37676355 37676472 37676355 ID=Msa1152330-mRNA-1:exon:8967;Parent=Msa1152330-mRNA-1
chr7_4 five_prime_UTR 37676395 37676472 37676395 ID=Msa1152330-mRNA-1:five_prime_utr;Parent=Msa1152330-mRNA-1
chr7_4 CDS 37676355 37676394 37676355 ID=Msa1152330-mRNA-1:cds;Parent=Msa1152330-mRNA-1
chr7_4 CDS 37676138 37676283 37676138 ID=Msa1152330-mRNA-1:cds;Parent=Msa1152330-mRNA-1
chr7_4 CDS 37675929 37676006 37675929 ID=Msa1152330-mRNA-1:cds;Parent=Msa1152330-mRNA-1
chr7_4 CDS 37675574 37675714 37675574 ID=Msa1152330-mRNA-1:cds;Parent=Msa1152330-mRNA-1
chr7_4 CDS 37675201 37675274 37675201 ID=Msa1152330-mRNA-1:cds;Parent=Msa1152330-mRNA-1
chr7_4 CDS 37674948 37675097 37674948 ID=Msa1152330-mRNA-1:cds;Parent=Msa1152330-mRNA-1
chr7_4 CDS 37674641 37674854 37674641 ID=Msa1152330-mRNA-1:cds;Parent=Msa1152330-mRNA-1
chr7_4 three_prime_UTR 37674527 37674640 37674527 ID=Msa1152330-mRNA-1:three_prime_utr;Parent=Msa1152330-mRNA-1
Gene Sequence

>Msa1152330

ATGGGATGCATATTATCTACCTTTCAATCCTCTCTCTCTGGTTGGGGAGCAATAAAGAGGGTTCTTCCATTGCACAGTGGGGGAGCAATAACGAGGCCTAAAATTGTGTTGTTTGGTTCTTCAATTGTTCAATACAGTTGCTATGAAGGTTGGGGAGCTACTCTTTCTCACTTGTACGCTCGTAAGGCTGATATAGTTTTGCGGGGATATGCTGCTTGGAATTCAAGGCGTGCTGTGCAAGTTTTGGATAAAATTTTTCCTAAGAATGCCATTGAGCAACCATCATTGGTGATTGTGTACTTTGGTGGTAATGATTGTATTCGTCCATATCCAAGTGGCCTTGGTCCTCATGTACCATTGCAGGAATACATACAAAATATGAGGAAGATTGCTACTCATATAATGAGCCTGTCACATAAGACTCGGATTATATTTCTCAGTAGTCCTCCGATCAACGAGGCACAAATTAGGATCAACATTGATGAATTTGGGCAACAAATAAGAACAAATGAAATAAGTCGAATATATTCAGAAGCGTGTTTGGATATGTGTCGTGAGATGAAAATAAAGGCCATTGATATGTGGTCTGCAATTCAGAAAAGAGATGATTGGAGAGATGTCTGTTTCATTGATGGAGTTCATCTATCAACTGAGGGGAGTGAAATATTAACAAAGGAGATATTGAATGTCATAAAAGAAGCAGAGTGGGAACCAAGTCTATATTGGAAGTTAATGCCAGCTGAATTTGGAGAAGATTCACCTTATGATATGGTTTCTCTTGATGGGAAGACAAATATTAATTACTCCAATGTGCCTTTTCCTCAAGATGTAGAGTGGCCTTGA

Protein sequence

>Msa1152330

MGCILSTFQSSLSGWGAIKRVLPLHSGGAITRPKIVLFGSSIVQYSCYEGWGATLSHLYARKADIVLRGYAAWNSRRAVQVLDKIFPKNAIEQPSLVIVYFGGNDCIRPYPSGLGPHVPLQEYIQNMRKIATHIMSLSHKTRIIFLSSPPINEAQIRINIDEFGQQIRTNEISRIYSEACLDMCREMKIKAIDMWSAIQKRDDWRDVCFIDGVHLSTEGSEILTKEILNVIKEAEWEPSLYWKLMPAEFGEDSPYDMVSLDGKTNINYSNVPFPQDVEWP*