AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1024420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1024420 MtrunA17_Chr7g0242431 86.786 280 37 0 1 280 1 280 0.0 511
Msa1024420 MtrunA17_Chr7g0242401 85.768 267 38 0 14 280 15 281 1.85e-174 482
Msa1024420 MtrunA17_Chr7g0242411 86.345 249 29 2 32 280 2 245 2.36e-159 443
Msa1024420 MtrunA17_Chr4g0006731 67.331 251 80 2 31 279 5 255 2.09e-124 355
Msa1024420 MtrunA17_Chr7g0242451 67.600 250 78 3 31 279 5 252 1.35e-122 350
Msa1024420 MtrunA17_Chr7g0242391 65.217 253 83 3 32 279 2 254 9.59e-119 340
Msa1024420 MtrunA17_Chr3g0113401 58.103 253 104 2 29 279 3 255 2.10e-109 317
Msa1024420 MtrunA17_Chr7g0242461 61.925 239 89 2 32 269 6 243 6.18e-106 308
Msa1024420 MtrunA17_Chr7g0242441 63.158 247 29 2 30 276 1 185 1.00e-102 297
Msa1024420 MtrunA17_Chr2g0283421 35.071 211 129 4 31 233 4 214 1.48e-41 143
Msa1024420 MtrunA17_Chr2g0283411 34.434 212 129 4 32 233 4 215 2.73e-41 142
Msa1024420 MtrunA17_Chr4g0059001 30.622 209 134 4 54 256 54 257 6.90e-29 111
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1024420 AT3G11210.1 58.167 251 103 2 31 279 5 255 2.76e-110 319
Msa1024420 AT2G38180.1 60.699 229 80 4 32 257 6 227 3.06e-100 296
Msa1024420 AT5G62930.1 34.914 232 140 4 32 256 2 229 1.11e-46 157
Msa1024420 AT5G62930.2 34.599 237 144 4 27 256 23 255 1.41e-46 157
Msa1024420 AT5G45920.1 38.389 211 123 4 30 233 1 211 7.41e-46 154
Msa1024420 AT5G45920.4 38.389 211 123 4 30 233 1 211 7.41e-46 154
Msa1024420 AT5G45920.2 38.503 187 108 4 30 209 1 187 3.99e-39 135
Msa1024420 AT5G45920.3 38.503 187 108 4 30 209 1 187 3.99e-39 135
Msa1024420 AT5G62930.3 30.682 176 107 5 94 263 7 173 1.71e-25 100

Find 67 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATAAGGATTCTATGAATT+TGG 0.135830 7_1:+53760615 None:intergenic
CTATTTCAACTCAGAAATTA+TGG 0.174297 7_1:-53762365 Msa1024420:exon
AAGTTAATGCCAGCTGAATT+TGG 0.274855 7_1:-53760741 Msa1024420:CDS
AATGAGCTCAGTGATGAATT+TGG 0.285385 7_1:-53761092 Msa1024420:intron
AAGGCGTGCTGTGCAAGTTT+TGG 0.302736 7_1:-53761920 Msa1024420:CDS
TATGATATGGTTTCTCTTGA+TGG 0.317939 7_1:-53760705 Msa1024420:CDS
AGAAGATTCACCTTATGATA+TGG 0.335446 7_1:-53760718 Msa1024420:CDS
AATATATTCAGAAGCGTGTT+TGG 0.360952 7_1:-53761039 Msa1024420:CDS
GGACCACGGCCACTTGGATA+TGG 0.374891 7_1:+53761606 None:intergenic
AGGCCTAAAATTGTGTTGTT+TGG 0.380075 7_1:-53762182 Msa1024420:CDS
GTTCAATACAGTTGCTATGA+AGG 0.383262 7_1:-53762149 Msa1024420:CDS
TATTTCAACTCAGAAATTAT+GGG 0.393187 7_1:-53762364 Msa1024420:exon
GAAGATTGCTACTCATATAA+TGG 0.403964 7_1:-53761547 Msa1024420:intron
ATACAGTTGCTATGAAGGTT+GGG 0.406406 7_1:-53762144 Msa1024420:CDS
AGTGGGAACCAAGTCTATAT+TGG 0.407643 7_1:-53760764 Msa1024420:CDS
TGGTCCTCATGTACCATTGC+AGG 0.411614 7_1:-53761589 Msa1024420:CDS
TAATAAAATCAATTTACATA+AGG 0.419747 7_1:+53760600 None:intergenic
CACTCTACATCTTGAGGAAA+AGG 0.437938 7_1:+53760654 None:intergenic
TGCCATTGAGCAACCATCAT+TGG 0.437939 7_1:-53761664 Msa1024420:CDS
GTGTCGTGAGATGAAAATAA+AGG 0.443191 7_1:-53761012 Msa1024420:CDS
ATGAGCTCAGTGATGAATTT+GGG 0.445759 7_1:-53761091 Msa1024420:intron
AATACAGTTGCTATGAAGGT+TGG 0.465220 7_1:-53762145 Msa1024420:CDS
ACCTTTCAATCCTCTCTCTC+TGG 0.465769 7_1:-53762328 Msa1024420:intron
CTTGCATGTTCAATAATACA+TGG 0.469501 7_1:-53760534 Msa1024420:three_prime_UTR
TTAATTTGTGCCTCGTTGAT+CGG 0.471864 7_1:+53761216 None:intergenic
TCAAGAGAAACCATATCATA+AGG 0.483799 7_1:+53760708 None:intergenic
ATGATATGGTTTCTCTTGAT+GGG 0.487292 7_1:-53760704 Msa1024420:CDS
GATATGCTGCTTGGAATTCA+AGG 0.495898 7_1:-53761939 Msa1024420:CDS
TTCTCACTTGTACGCTCGTA+AGG 0.496236 7_1:-53762111 Msa1024420:intron
CAATTCAGAAAAGAGATGAT+TGG 0.498393 7_1:-53760971 Msa1024420:CDS
CACCAATGATGGTTGCTCAA+TGG 0.505270 7_1:+53761662 None:intergenic
GGGTTCTTCCATTGCACAGT+GGG 0.510655 7_1:-53762217 Msa1024420:CDS
CGTCCATATCCAAGTGGCCG+TGG 0.515232 7_1:-53761609 Msa1024420:CDS
TTGGTGATTGTGTACTTTGG+TGG 0.528440 7_1:-53761645 Msa1024420:CDS
AAGTACACAATCACCAATGA+TGG 0.528971 7_1:+53761651 None:intergenic
GAATCTTCTCCAAATTCAGC+TGG 0.530268 7_1:+53760732 None:intergenic
ACATGAGGACCACGGCCACT+TGG 0.531918 7_1:+53761600 None:intergenic
AAGGTTGGGGAGCAATAAAG+AGG 0.532708 7_1:-53762238 Msa1024420:CDS
AGGAATACATAGAAAATATG+AGG 0.533134 7_1:-53761569 Msa1024420:CDS
GTTCTTCCATTGCACAGTGG+GGG 0.534821 7_1:-53762215 Msa1024420:CDS
ACCAGAGAGAGAGGATTGAA+AGG 0.536372 7_1:+53762327 None:intergenic
TAATCCGAGTCTTATGTGAC+AGG 0.539331 7_1:+53761256 None:intergenic
GAATTTGGAATAATATATCA+AGG 0.546411 7_1:+53760630 None:intergenic
TCATTGGTGATTGTGTACTT+TGG 0.556007 7_1:-53761648 Msa1024420:CDS
TACAGTTGCTATGAAGGTTG+GGG 0.558888 7_1:-53762143 Msa1024420:CDS
GAGAAAGTTACCAGAGAGAG+AGG 0.562172 7_1:+53762318 None:intergenic
CAAGGCCACTCTACATCTTG+AGG 0.564026 7_1:+53760648 None:intergenic
AATTGCAGACCACATATCAA+TGG 0.566695 7_1:+53760989 None:intergenic
ATTAACTTCCAATATAGACT+TGG 0.567442 7_1:+53760756 None:intergenic
TGTCATAAAAGAAGCAGAGT+GGG 0.567830 7_1:-53760781 Msa1024420:CDS
AAATAAAGGCCATTGATATG+TGG 0.571676 7_1:-53760998 Msa1024420:CDS
GGAGTTCATCTATCAACTGA+GGG 0.572805 7_1:-53760834 Msa1024420:CDS
ATTTGTGCCTCGTTGATCGG+AGG 0.590408 7_1:+53761219 None:intergenic
ATCTTGAGGAAAAGGCACAT+TGG 0.602253 7_1:+53760662 None:intergenic
TATTCCTGCAATGGTACATG+AGG 0.621940 7_1:+53761585 None:intergenic
GGGGAGTGAAATATTAACAA+AGG 0.628715 7_1:-53760814 Msa1024420:CDS
TTGCATGTTCAATAATACAT+GGG 0.642172 7_1:-53760533 Msa1024420:three_prime_UTR
GGTTCTTCCATTGCACAGTG+GGG 0.662401 7_1:-53762216 Msa1024420:CDS
AGAGCCTGTCACATAAGACT+CGG 0.665508 7_1:-53761260 Msa1024420:CDS
ATGTCATAAAAGAAGCAGAG+TGG 0.667998 7_1:-53760782 Msa1024420:CDS
TGGAGTTCATCTATCAACTG+AGG 0.669042 7_1:-53760835 Msa1024420:CDS
AGGGTTCTTCCATTGCACAG+TGG 0.698129 7_1:-53762218 Msa1024420:CDS
TGTATTCGTCCATATCCAAG+TGG 0.698167 7_1:-53761615 Msa1024420:CDS
AGGTTGGGGAGCAATAAAGA+GGG 0.711573 7_1:-53762237 Msa1024420:CDS
GAGTTCATCTATCAACTGAG+GGG 0.728386 7_1:-53760833 Msa1024420:CDS
CAGTAGTCCTCCGATCAACG+AGG 0.731081 7_1:-53761226 Msa1024420:CDS
GCAATGGTACATGAGGACCA+CGG 0.761576 7_1:+53761592 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGATTATACATTTTTTAA+GGG + chr7_1:53761791-53761810 None:intergenic 10.0%
!!! AATTTAAAACATTTTAGTTT+AGG + chr7_1:53762054-53762073 None:intergenic 10.0%
!! TAATAAAATCAATTTACATA+AGG + chr7_1:53762360-53762379 None:intergenic 10.0%
!!! AAAGATTATACATTTTTTAA+GGG + chr7_1:53761791-53761810 None:intergenic 10.0%
!!! AATTTAAAACATTTTAGTTT+AGG + chr7_1:53762054-53762073 None:intergenic 10.0%
!! TAATAAAATCAATTTACATA+AGG + chr7_1:53762360-53762379 None:intergenic 10.0%
!! AATATGATTGTATTGAAAAA+TGG + chr7_1:53760693-53760712 None:intergenic 15.0%
!!! TTTTCAATACAATCATATTA+TGG - chr7_1:53760694-53760713 Msa1024420:CDS 15.0%
!!! AAAAGTACATTGATAATAAA+TGG + chr7_1:53761617-53761636 None:intergenic 15.0%
!!! CAAAGATTATACATTTTTTA+AGG + chr7_1:53761792-53761811 None:intergenic 15.0%
!! AGATATATCATAGAATAATT+AGG + chr7_1:53761827-53761846 None:intergenic 15.0%
!! TCAATAATAATTTAATTAGG+TGG - chr7_1:53762080-53762099 Msa1024420:intron 15.0%
!! AATATGATTGTATTGAAAAA+TGG + chr7_1:53760693-53760712 None:intergenic 15.0%
!!! TTTTCAATACAATCATATTA+TGG - chr7_1:53760694-53760713 Msa1024420:CDS 15.0%
!!! AAAAGTACATTGATAATAAA+TGG + chr7_1:53761617-53761636 None:intergenic 15.0%
!!! CAAAGATTATACATTTTTTA+AGG + chr7_1:53761792-53761811 None:intergenic 15.0%
!! AGATATATCATAGAATAATT+AGG + chr7_1:53761827-53761846 None:intergenic 15.0%
!! TCAATAATAATTTAATTAGG+TGG - chr7_1:53762080-53762099 Msa1024420:intron 15.0%
!! TATTTCAACTCAGAAATTAT+GGG - chr7_1:53760593-53760612 Msa1024420:three_prime_UTR 20.0%
!! ATTACGGTATTAATAATTAG+AGG + chr7_1:53760886-53760905 None:intergenic 20.0%
!!! TTAATACCGTAATGTTTTAT+TGG - chr7_1:53760893-53760912 Msa1024420:intron 20.0%
!!! TTTGGATAAAATTTTTCCTA+AGG - chr7_1:53761055-53761074 Msa1024420:CDS 20.0%
!! AAATCAAAATAATCACATCA+TGG + chr7_1:53761219-53761238 None:intergenic 20.0%
!!! GAATTTGGAATAATATATCA+AGG + chr7_1:53762330-53762349 None:intergenic 20.0%
!! TATTTCAACTCAGAAATTAT+GGG - chr7_1:53760593-53760612 Msa1024420:three_prime_UTR 20.0%
!! ATTACGGTATTAATAATTAG+AGG + chr7_1:53760886-53760905 None:intergenic 20.0%
!!! TTAATACCGTAATGTTTTAT+TGG - chr7_1:53760893-53760912 Msa1024420:intron 20.0%
!!! TTTGGATAAAATTTTTCCTA+AGG - chr7_1:53761055-53761074 Msa1024420:CDS 20.0%
!! AAATCAAAATAATCACATCA+TGG + chr7_1:53761219-53761238 None:intergenic 20.0%
!!! GAATTTGGAATAATATATCA+AGG + chr7_1:53762330-53762349 None:intergenic 20.0%
! CTATTTCAACTCAGAAATTA+TGG - chr7_1:53760592-53760611 Msa1024420:three_prime_UTR 25.0%
! ATACAATCATATTATGGTGA+AGG - chr7_1:53760700-53760719 Msa1024420:CDS 25.0%
! ACAGAACCAATAAAACATTA+CGG + chr7_1:53760902-53760921 None:intergenic 25.0%
! GTCATTATATTCAATACCTT+AGG + chr7_1:53761074-53761093 None:intergenic 25.0%
! TTGAATATAATGACTGATGA+AGG - chr7_1:53761080-53761099 Msa1024420:CDS 25.0%
! TTGATCCAAAAAATTTCCTA+AGG - chr7_1:53761109-53761128 Msa1024420:intron 25.0%
!!! ATATGCCTTAGGAAATTTTT+TGG + chr7_1:53761117-53761136 None:intergenic 25.0%
! AGGAATACATAGAAAATATG+AGG - chr7_1:53761388-53761407 Msa1024420:intron 25.0%
! TTTAACACAATTGAAATACG+TGG - chr7_1:53761481-53761500 Msa1024420:intron 25.0%
!!! TACATTTTTTAAGGGAACAA+AGG + chr7_1:53761783-53761802 None:intergenic 25.0%
! ATGTTTGTTTCATGTAAGTA+TGG - chr7_1:53762013-53762032 Msa1024420:intron 25.0%
!! GTTTGATTATTTCTTAGTGA+TGG - chr7_1:53762102-53762121 Msa1024420:intron 25.0%
! ATTAACTTCCAATATAGACT+TGG + chr7_1:53762204-53762223 None:intergenic 25.0%
! ACATAAGGATTCTATGAATT+TGG + chr7_1:53762345-53762364 None:intergenic 25.0%
!!! ATGTTTTTCGAAAGGAAATA+TGG - chr7_1:53762389-53762408 Msa1024420:five_prime_UTR 25.0%
! TTGCATGTTCAATAATACAT+GGG - chr7_1:53762424-53762443 Msa1024420:five_prime_UTR 25.0%
! CTATTTCAACTCAGAAATTA+TGG - chr7_1:53760592-53760611 Msa1024420:three_prime_UTR 25.0%
! ATACAATCATATTATGGTGA+AGG - chr7_1:53760700-53760719 Msa1024420:CDS 25.0%
! ACAGAACCAATAAAACATTA+CGG + chr7_1:53760902-53760921 None:intergenic 25.0%
! GTCATTATATTCAATACCTT+AGG + chr7_1:53761074-53761093 None:intergenic 25.0%
! TTGAATATAATGACTGATGA+AGG - chr7_1:53761080-53761099 Msa1024420:CDS 25.0%
! TTGATCCAAAAAATTTCCTA+AGG - chr7_1:53761109-53761128 Msa1024420:intron 25.0%
!!! ATATGCCTTAGGAAATTTTT+TGG + chr7_1:53761117-53761136 None:intergenic 25.0%
! AGGAATACATAGAAAATATG+AGG - chr7_1:53761388-53761407 Msa1024420:intron 25.0%
! TTTAACACAATTGAAATACG+TGG - chr7_1:53761481-53761500 Msa1024420:intron 25.0%
!!! TACATTTTTTAAGGGAACAA+AGG + chr7_1:53761783-53761802 None:intergenic 25.0%
! ATGTTTGTTTCATGTAAGTA+TGG - chr7_1:53762013-53762032 Msa1024420:intron 25.0%
!! GTTTGATTATTTCTTAGTGA+TGG - chr7_1:53762102-53762121 Msa1024420:intron 25.0%
! ATTAACTTCCAATATAGACT+TGG + chr7_1:53762204-53762223 None:intergenic 25.0%
! ACATAAGGATTCTATGAATT+TGG + chr7_1:53762345-53762364 None:intergenic 25.0%
!!! ATGTTTTTCGAAAGGAAATA+TGG - chr7_1:53762389-53762408 Msa1024420:five_prime_UTR 25.0%
AATCATATTATGGTGAAGGT+TGG - chr7_1:53760704-53760723 Msa1024420:CDS 30.0%
ATCATATTATGGTGAAGGTT+GGG - chr7_1:53760705-53760724 Msa1024420:CDS 30.0%
! GAACCAAACAACACAATTTT+AGG + chr7_1:53760781-53760800 None:intergenic 30.0%
!! ACCTAACATTGATTTGATGT+AGG - chr7_1:53760977-53760996 Msa1024420:CDS 30.0%
ACTTATGTATATGCTGCAAA+TGG + chr7_1:53761165-53761184 None:intergenic 30.0%
! TTTTCTATGTATTCCTGCAA+TGG + chr7_1:53761384-53761403 None:intergenic 30.0%
GAAGATTGCTACTCATATAA+TGG - chr7_1:53761410-53761429 Msa1024420:intron 30.0%
! AATATATTCAGAAGCGTGTT+TGG - chr7_1:53761918-53761937 Msa1024420:CDS 30.0%
AAATAAAGGCCATTGATATG+TGG - chr7_1:53761959-53761978 Msa1024420:CDS 30.0%
CAATTCAGAAAAGAGATGAT+TGG - chr7_1:53761986-53762005 Msa1024420:intron 30.0%
AGAAGATTCACCTTATGATA+TGG - chr7_1:53762239-53762258 Msa1024420:intron 30.0%
TCAAGAGAAACCATATCATA+AGG + chr7_1:53762252-53762271 None:intergenic 30.0%
TATGATATGGTTTCTCTTGA+TGG - chr7_1:53762252-53762271 Msa1024420:intron 30.0%
ATGATATGGTTTCTCTTGAT+GGG - chr7_1:53762253-53762272 Msa1024420:intron 30.0%
!! ATGCTTCAATGTTTTTCGAA+AGG - chr7_1:53762381-53762400 Msa1024420:five_prime_UTR 30.0%
CTTGCATGTTCAATAATACA+TGG - chr7_1:53762423-53762442 Msa1024420:five_prime_UTR 30.0%
TGCATGTTCAATAATACATG+GGG - chr7_1:53762425-53762444 Msa1024420:five_prime_UTR 30.0%
AATCATATTATGGTGAAGGT+TGG - chr7_1:53760704-53760723 Msa1024420:CDS 30.0%
ATCATATTATGGTGAAGGTT+GGG - chr7_1:53760705-53760724 Msa1024420:CDS 30.0%
! GAACCAAACAACACAATTTT+AGG + chr7_1:53760781-53760800 None:intergenic 30.0%
!! ACCTAACATTGATTTGATGT+AGG - chr7_1:53760977-53760996 Msa1024420:CDS 30.0%
ACTTATGTATATGCTGCAAA+TGG + chr7_1:53761165-53761184 None:intergenic 30.0%
! TTTTCTATGTATTCCTGCAA+TGG + chr7_1:53761384-53761403 None:intergenic 30.0%
GAAGATTGCTACTCATATAA+TGG - chr7_1:53761410-53761429 Msa1024420:intron 30.0%
! AATATATTCAGAAGCGTGTT+TGG - chr7_1:53761918-53761937 Msa1024420:CDS 30.0%
AAATAAAGGCCATTGATATG+TGG - chr7_1:53761959-53761978 Msa1024420:CDS 30.0%
CAATTCAGAAAAGAGATGAT+TGG - chr7_1:53761986-53762005 Msa1024420:intron 30.0%
AGAAGATTCACCTTATGATA+TGG - chr7_1:53762239-53762258 Msa1024420:intron 30.0%
TCAAGAGAAACCATATCATA+AGG + chr7_1:53762252-53762271 None:intergenic 30.0%
TATGATATGGTTTCTCTTGA+TGG - chr7_1:53762252-53762271 Msa1024420:intron 30.0%
ATGATATGGTTTCTCTTGAT+GGG - chr7_1:53762253-53762272 Msa1024420:intron 30.0%
!! ATGCTTCAATGTTTTTCGAA+AGG - chr7_1:53762381-53762400 Msa1024420:five_prime_UTR 30.0%
CTTGCATGTTCAATAATACA+TGG - chr7_1:53762423-53762442 Msa1024420:five_prime_UTR 30.0%
TCATATTATGGTGAAGGTTG+GGG - chr7_1:53760706-53760725 Msa1024420:CDS 35.0%
! AGGCCTAAAATTGTGTTGTT+TGG - chr7_1:53760775-53760794 Msa1024420:CDS 35.0%
GTTCAATACAGTTGCTATGA+AGG - chr7_1:53760808-53760827 Msa1024420:CDS 35.0%
AATACAGTTGCTATGAAGGT+TGG - chr7_1:53760812-53760831 Msa1024420:CDS 35.0%
ATACAGTTGCTATGAAGGTT+GGG - chr7_1:53760813-53760832 Msa1024420:CDS 35.0%
!!! TGTTTTATTGGTTCTGTACC+TGG - chr7_1:53760905-53760924 Msa1024420:intron 35.0%
GACAATGCATAATATATGCC+AGG + chr7_1:53760926-53760945 None:intergenic 35.0%
GCCTACATCAAATCAATGTT+AGG + chr7_1:53760981-53761000 None:intergenic 35.0%
!! TGTAGGCTGATATAGTTTTG+CGG - chr7_1:53760994-53761013 Msa1024420:CDS 35.0%
TTGAGGGTAAAATATGCCTT+AGG + chr7_1:53761128-53761147 None:intergenic 35.0%
!! GGTGGTATTACTTAAGTTGA+GGG + chr7_1:53761144-53761163 None:intergenic 35.0%
! TGGTGGTATTACTTAAGTTG+AGG + chr7_1:53761145-53761164 None:intergenic 35.0%
TATGTATATGCTGCAAATGG+TGG + chr7_1:53761162-53761181 None:intergenic 35.0%
AAGTACACAATCACCAATGA+TGG + chr7_1:53761309-53761328 None:intergenic 35.0%
! TCATTGGTGATTGTGTACTT+TGG - chr7_1:53761309-53761328 Msa1024420:intron 35.0%
!! TTAATTTGTGCCTCGTTGAT+CGG + chr7_1:53761744-53761763 None:intergenic 35.0%
AATGAGCTCAGTGATGAATT+TGG - chr7_1:53761865-53761884 Msa1024420:intron 35.0%
ATGAGCTCAGTGATGAATTT+GGG - chr7_1:53761866-53761885 Msa1024420:intron 35.0%
GTGTCGTGAGATGAAAATAA+AGG - chr7_1:53761945-53761964 Msa1024420:CDS 35.0%
AATTGCAGACCACATATCAA+TGG + chr7_1:53761971-53761990 None:intergenic 35.0%
GGGGAGTGAAATATTAACAA+AGG - chr7_1:53762143-53762162 Msa1024420:CDS 35.0%
ATGTCATAAAAGAAGCAGAG+TGG - chr7_1:53762175-53762194 Msa1024420:CDS 35.0%
TGTCATAAAAGAAGCAGAGT+GGG - chr7_1:53762176-53762195 Msa1024420:CDS 35.0%
AAGTTAATGCCAGCTGAATT+TGG - chr7_1:53762216-53762235 Msa1024420:CDS 35.0%
GCATGTTCAATAATACATGG+GGG - chr7_1:53762426-53762445 Msa1024420:five_prime_UTR 35.0%
TCATATTATGGTGAAGGTTG+GGG - chr7_1:53760706-53760725 Msa1024420:CDS 35.0%
! AGGCCTAAAATTGTGTTGTT+TGG - chr7_1:53760775-53760794 Msa1024420:CDS 35.0%
GTTCAATACAGTTGCTATGA+AGG - chr7_1:53760808-53760827 Msa1024420:CDS 35.0%
AATACAGTTGCTATGAAGGT+TGG - chr7_1:53760812-53760831 Msa1024420:CDS 35.0%
ATACAGTTGCTATGAAGGTT+GGG - chr7_1:53760813-53760832 Msa1024420:CDS 35.0%
!!! TGTTTTATTGGTTCTGTACC+TGG - chr7_1:53760905-53760924 Msa1024420:intron 35.0%
GACAATGCATAATATATGCC+AGG + chr7_1:53760926-53760945 None:intergenic 35.0%
GCCTACATCAAATCAATGTT+AGG + chr7_1:53760981-53761000 None:intergenic 35.0%
!! TGTAGGCTGATATAGTTTTG+CGG - chr7_1:53760994-53761013 Msa1024420:CDS 35.0%
TTGAGGGTAAAATATGCCTT+AGG + chr7_1:53761128-53761147 None:intergenic 35.0%
!! GGTGGTATTACTTAAGTTGA+GGG + chr7_1:53761144-53761163 None:intergenic 35.0%
! TGGTGGTATTACTTAAGTTG+AGG + chr7_1:53761145-53761164 None:intergenic 35.0%
TATGTATATGCTGCAAATGG+TGG + chr7_1:53761162-53761181 None:intergenic 35.0%
AAGTACACAATCACCAATGA+TGG + chr7_1:53761309-53761328 None:intergenic 35.0%
! TCATTGGTGATTGTGTACTT+TGG - chr7_1:53761309-53761328 Msa1024420:intron 35.0%
!! TTAATTTGTGCCTCGTTGAT+CGG + chr7_1:53761744-53761763 None:intergenic 35.0%
AATGAGCTCAGTGATGAATT+TGG - chr7_1:53761865-53761884 Msa1024420:intron 35.0%
ATGAGCTCAGTGATGAATTT+GGG - chr7_1:53761866-53761885 Msa1024420:intron 35.0%
GTGTCGTGAGATGAAAATAA+AGG - chr7_1:53761945-53761964 Msa1024420:CDS 35.0%
AATTGCAGACCACATATCAA+TGG + chr7_1:53761971-53761990 None:intergenic 35.0%
GGGGAGTGAAATATTAACAA+AGG - chr7_1:53762143-53762162 Msa1024420:CDS 35.0%
ATGTCATAAAAGAAGCAGAG+TGG - chr7_1:53762175-53762194 Msa1024420:CDS 35.0%
TGTCATAAAAGAAGCAGAGT+GGG - chr7_1:53762176-53762195 Msa1024420:CDS 35.0%
AAGTTAATGCCAGCTGAATT+TGG - chr7_1:53762216-53762235 Msa1024420:CDS 35.0%
TACAGTTGCTATGAAGGTTG+GGG - chr7_1:53760814-53760833 Msa1024420:CDS 40.0%
! TGAGCTTAGCTCAGTTGATA+TGG + chr7_1:53760948-53760967 None:intergenic 40.0%
!! GTAGGCTGATATAGTTTTGC+GGG - chr7_1:53760995-53761014 Msa1024420:CDS 40.0%
!! TAGGCTGATATAGTTTTGCG+GGG - chr7_1:53760996-53761015 Msa1024420:CDS 40.0%
! GATATGCTGCTTGGAATTCA+AGG - chr7_1:53761018-53761037 Msa1024420:CDS 40.0%
CACCTCTGATACTCTTATAC+TGG - chr7_1:53761253-53761272 Msa1024420:CDS 40.0%
!! GACCAGTATAAGAGTATCAG+AGG + chr7_1:53761258-53761277 None:intergenic 40.0%
! TTGGTGATTGTGTACTTTGG+TGG - chr7_1:53761312-53761331 Msa1024420:intron 40.0%
TGTATTCGTCCATATCCAAG+TGG - chr7_1:53761342-53761361 Msa1024420:intron 40.0%
TATTCCTGCAATGGTACATG+AGG + chr7_1:53761375-53761394 None:intergenic 40.0%
! TAATCCGAGTCTTATGTGAC+AGG + chr7_1:53761704-53761723 None:intergenic 40.0%
TGGAGTTCATCTATCAACTG+AGG - chr7_1:53762122-53762141 Msa1024420:CDS 40.0%
GGAGTTCATCTATCAACTGA+GGG - chr7_1:53762123-53762142 Msa1024420:CDS 40.0%
GAGTTCATCTATCAACTGAG+GGG - chr7_1:53762124-53762143 Msa1024420:CDS 40.0%
AGTGGGAACCAAGTCTATAT+TGG - chr7_1:53762193-53762212 Msa1024420:CDS 40.0%
GAATCTTCTCCAAATTCAGC+TGG + chr7_1:53762228-53762247 None:intergenic 40.0%
! ATCTTGAGGAAAAGGCACAT+TGG + chr7_1:53762298-53762317 None:intergenic 40.0%
CACTCTACATCTTGAGGAAA+AGG + chr7_1:53762306-53762325 None:intergenic 40.0%
! CTTTTCCTCAAGATGTAGAG+TGG - chr7_1:53762304-53762323 Msa1024420:intron 40.0%
TACAGTTGCTATGAAGGTTG+GGG - chr7_1:53760814-53760833 Msa1024420:CDS 40.0%
! TGAGCTTAGCTCAGTTGATA+TGG + chr7_1:53760948-53760967 None:intergenic 40.0%
!! GTAGGCTGATATAGTTTTGC+GGG - chr7_1:53760995-53761014 Msa1024420:CDS 40.0%
!! TAGGCTGATATAGTTTTGCG+GGG - chr7_1:53760996-53761015 Msa1024420:CDS 40.0%
! GATATGCTGCTTGGAATTCA+AGG - chr7_1:53761018-53761037 Msa1024420:CDS 40.0%
CACCTCTGATACTCTTATAC+TGG - chr7_1:53761253-53761272 Msa1024420:CDS 40.0%
!! GACCAGTATAAGAGTATCAG+AGG + chr7_1:53761258-53761277 None:intergenic 40.0%
! TTGGTGATTGTGTACTTTGG+TGG - chr7_1:53761312-53761331 Msa1024420:intron 40.0%
TGTATTCGTCCATATCCAAG+TGG - chr7_1:53761342-53761361 Msa1024420:intron 40.0%
TATTCCTGCAATGGTACATG+AGG + chr7_1:53761375-53761394 None:intergenic 40.0%
! TAATCCGAGTCTTATGTGAC+AGG + chr7_1:53761704-53761723 None:intergenic 40.0%
TGGAGTTCATCTATCAACTG+AGG - chr7_1:53762122-53762141 Msa1024420:CDS 40.0%
GGAGTTCATCTATCAACTGA+GGG - chr7_1:53762123-53762142 Msa1024420:CDS 40.0%
GAGTTCATCTATCAACTGAG+GGG - chr7_1:53762124-53762143 Msa1024420:CDS 40.0%
AGTGGGAACCAAGTCTATAT+TGG - chr7_1:53762193-53762212 Msa1024420:CDS 40.0%
GAATCTTCTCCAAATTCAGC+TGG + chr7_1:53762228-53762247 None:intergenic 40.0%
! ATCTTGAGGAAAAGGCACAT+TGG + chr7_1:53762298-53762317 None:intergenic 40.0%
CACTCTACATCTTGAGGAAA+AGG + chr7_1:53762306-53762325 None:intergenic 40.0%
! CTTTTCCTCAAGATGTAGAG+TGG - chr7_1:53762304-53762323 Msa1024420:intron 40.0%
ACCTTTCAATCCTCTCTCTC+TGG - chr7_1:53760629-53760648 Msa1024420:exon 45.0%
ACCAGAGAGAGAGGATTGAA+AGG + chr7_1:53760633-53760652 None:intergenic 45.0%
GAGAAAGTTACCAGAGAGAG+AGG + chr7_1:53760642-53760661 None:intergenic 45.0%
AAGGTTGGGGAGCAATAAAG+AGG - chr7_1:53760719-53760738 Msa1024420:CDS 45.0%
AGGTTGGGGAGCAATAAAGA+GGG - chr7_1:53760720-53760739 Msa1024420:CDS 45.0%
TTCTCACTTGTACGCTCGTA+AGG - chr7_1:53760846-53760865 Msa1024420:intron 45.0%
TGCCATTGAGCAACCATCAT+TGG - chr7_1:53761293-53761312 Msa1024420:intron 45.0%
CACCAATGATGGTTGCTCAA+TGG + chr7_1:53761298-53761317 None:intergenic 45.0%
AGAGCCTGTCACATAAGACT+CGG - chr7_1:53761697-53761716 Msa1024420:intron 45.0%
ACCTTTCAATCCTCTCTCTC+TGG - chr7_1:53760629-53760648 Msa1024420:exon 45.0%
ACCAGAGAGAGAGGATTGAA+AGG + chr7_1:53760633-53760652 None:intergenic 45.0%
GAGAAAGTTACCAGAGAGAG+AGG + chr7_1:53760642-53760661 None:intergenic 45.0%
AAGGTTGGGGAGCAATAAAG+AGG - chr7_1:53760719-53760738 Msa1024420:CDS 45.0%
AGGTTGGGGAGCAATAAAGA+GGG - chr7_1:53760720-53760739 Msa1024420:CDS 45.0%
TTCTCACTTGTACGCTCGTA+AGG - chr7_1:53760846-53760865 Msa1024420:intron 45.0%
TGCCATTGAGCAACCATCAT+TGG - chr7_1:53761293-53761312 Msa1024420:intron 45.0%
CACCAATGATGGTTGCTCAA+TGG + chr7_1:53761298-53761317 None:intergenic 45.0%
AGAGCCTGTCACATAAGACT+CGG - chr7_1:53761697-53761716 Msa1024420:intron 45.0%
!! TTATCAATAATAATTTAATT+AGG - chr7_1:53762077-53762096 Msa1024420:intron 5.0%
!! TTATCAATAATAATTTAATT+AGG - chr7_1:53762077-53762096 Msa1024420:intron 5.0%
AGGGTTCTTCCATTGCACAG+TGG - chr7_1:53760739-53760758 Msa1024420:CDS 50.0%
GGGTTCTTCCATTGCACAGT+GGG - chr7_1:53760740-53760759 Msa1024420:CDS 50.0%
GGTTCTTCCATTGCACAGTG+GGG - chr7_1:53760741-53760760 Msa1024420:CDS 50.0%
GTTCTTCCATTGCACAGTGG+GGG - chr7_1:53760742-53760761 Msa1024420:CDS 50.0%
TCAACTGAGCTAAGCTCACG+AGG - chr7_1:53760950-53760969 Msa1024420:intron 50.0%
! TTTTGCGGGGATATGCTGCT+TGG - chr7_1:53761009-53761028 Msa1024420:CDS 50.0%
! AAGGCGTGCTGTGCAAGTTT+TGG - chr7_1:53761037-53761056 Msa1024420:CDS 50.0%
GCAATGGTACATGAGGACCA+CGG + chr7_1:53761368-53761387 None:intergenic 50.0%
TGGTCCTCATGTACCATTGC+AGG - chr7_1:53761368-53761387 Msa1024420:intron 50.0%
ATTTGTGCCTCGTTGATCGG+AGG + chr7_1:53761741-53761760 None:intergenic 50.0%
CAAGGCCACTCTACATCTTG+AGG + chr7_1:53762312-53762331 None:intergenic 50.0%
AGGGTTCTTCCATTGCACAG+TGG - chr7_1:53760739-53760758 Msa1024420:CDS 50.0%
GGGTTCTTCCATTGCACAGT+GGG - chr7_1:53760740-53760759 Msa1024420:CDS 50.0%
GGTTCTTCCATTGCACAGTG+GGG - chr7_1:53760741-53760760 Msa1024420:CDS 50.0%
GTTCTTCCATTGCACAGTGG+GGG - chr7_1:53760742-53760761 Msa1024420:CDS 50.0%
TCAACTGAGCTAAGCTCACG+AGG - chr7_1:53760950-53760969 Msa1024420:intron 50.0%
! TTTTGCGGGGATATGCTGCT+TGG - chr7_1:53761009-53761028 Msa1024420:CDS 50.0%
! AAGGCGTGCTGTGCAAGTTT+TGG - chr7_1:53761037-53761056 Msa1024420:CDS 50.0%
GCAATGGTACATGAGGACCA+CGG + chr7_1:53761368-53761387 None:intergenic 50.0%
TGGTCCTCATGTACCATTGC+AGG - chr7_1:53761368-53761387 Msa1024420:intron 50.0%
ATTTGTGCCTCGTTGATCGG+AGG + chr7_1:53761741-53761760 None:intergenic 50.0%
CAAGGCCACTCTACATCTTG+AGG + chr7_1:53762312-53762331 None:intergenic 50.0%
ATTGCTCCCCCACTGTGCAA+TGG + chr7_1:53760751-53760770 None:intergenic 55.0%
ACAGTGGGGGAGCAATAACG+AGG - chr7_1:53760755-53760774 Msa1024420:CDS 55.0%
CAGTAGTCCTCCGATCAACG+AGG - chr7_1:53761731-53761750 Msa1024420:intron 55.0%
ATTGCTCCCCCACTGTGCAA+TGG + chr7_1:53760751-53760770 None:intergenic 55.0%
ACAGTGGGGGAGCAATAACG+AGG - chr7_1:53760755-53760774 Msa1024420:CDS 55.0%
CAGTAGTCCTCCGATCAACG+AGG - chr7_1:53761731-53761750 Msa1024420:intron 55.0%
CGTCCATATCCAAGTGGCCG+TGG - chr7_1:53761348-53761367 Msa1024420:intron 60.0%
GGACCACGGCCACTTGGATA+TGG + chr7_1:53761354-53761373 None:intergenic 60.0%
ACATGAGGACCACGGCCACT+TGG + chr7_1:53761360-53761379 None:intergenic 60.0%
CGTCCATATCCAAGTGGCCG+TGG - chr7_1:53761348-53761367 Msa1024420:intron 60.0%
GGACCACGGCCACTTGGATA+TGG + chr7_1:53761354-53761373 None:intergenic 60.0%
ACATGAGGACCACGGCCACT+TGG + chr7_1:53761360-53761379 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 53760533 53762446 53760533 ID=Msa1024420;Name=Msa1024420
chr7_1 mRNA 53760533 53762446 53760533 ID=Msa1024420-mRNA-1;Parent=Msa1024420;Name=Msa1024420-mRNA-1;_AED=0.11;_eAED=0.11;_QI=78|1|0.71|1|1|1|7|114|280
chr7_1 exon 53760533 53760860 53760533 ID=Msa1024420-mRNA-1:exon:10602;Parent=Msa1024420-mRNA-1
chr7_1 exon 53760954 53761103 53760954 ID=Msa1024420-mRNA-1:exon:10601;Parent=Msa1024420-mRNA-1
chr7_1 exon 53761207 53761280 53761207 ID=Msa1024420-mRNA-1:exon:10600;Parent=Msa1024420-mRNA-1
chr7_1 exon 53761548 53761688 53761548 ID=Msa1024420-mRNA-1:exon:10599;Parent=Msa1024420-mRNA-1
chr7_1 exon 53761903 53761980 53761903 ID=Msa1024420-mRNA-1:exon:10598;Parent=Msa1024420-mRNA-1
chr7_1 exon 53762112 53762257 53762112 ID=Msa1024420-mRNA-1:exon:10597;Parent=Msa1024420-mRNA-1
chr7_1 exon 53762329 53762446 53762329 ID=Msa1024420-mRNA-1:exon:10596;Parent=Msa1024420-mRNA-1
chr7_1 five_prime_UTR 53762369 53762446 53762369 ID=Msa1024420-mRNA-1:five_prime_utr;Parent=Msa1024420-mRNA-1
chr7_1 CDS 53762329 53762368 53762329 ID=Msa1024420-mRNA-1:cds;Parent=Msa1024420-mRNA-1
chr7_1 CDS 53762112 53762257 53762112 ID=Msa1024420-mRNA-1:cds;Parent=Msa1024420-mRNA-1
chr7_1 CDS 53761903 53761980 53761903 ID=Msa1024420-mRNA-1:cds;Parent=Msa1024420-mRNA-1
chr7_1 CDS 53761548 53761688 53761548 ID=Msa1024420-mRNA-1:cds;Parent=Msa1024420-mRNA-1
chr7_1 CDS 53761207 53761280 53761207 ID=Msa1024420-mRNA-1:cds;Parent=Msa1024420-mRNA-1
chr7_1 CDS 53760954 53761103 53760954 ID=Msa1024420-mRNA-1:cds;Parent=Msa1024420-mRNA-1
chr7_1 CDS 53760647 53760860 53760647 ID=Msa1024420-mRNA-1:cds;Parent=Msa1024420-mRNA-1
chr7_1 three_prime_UTR 53760533 53760646 53760533 ID=Msa1024420-mRNA-1:three_prime_utr;Parent=Msa1024420-mRNA-1
Gene Sequence

>Msa1024420

ATGGGATGCATATTATCTACCTTTCAATCCTCTCTCTCTGGTTGGGGAGCAATAAAGAGGGTTCTTCCATTGCACAGTGGGGGAGCAATAACGAGGCCTAAAATTGTGTTGTTTGGTTCTTCAATTGTTCAATACAGTTGCTATGAAGGTTGGGGAGCTACTCTTTCTCACTTGTACGCTCGTAAGGCTGATATAGTTTTGCGGGGATATGCTGCTTGGAATTCAAGGCGTGCTGTGCAAGTTTTGGATAAAATTTTTCCTAAGAATGCCATTGAGCAACCATCATTGGTGATTGTGTACTTTGGTGGTAATGATTGTATTCGTCCATATCCAAGTGGCCGTGGTCCTCATGTACCATTGCAGGAATACATAGAAAATATGAGGAAGATTGCTACTCATATAATGAGCCTGTCACATAAGACTCGGATTATATTTCTCAGTAGTCCTCCGATCAACGAGGCACAAATTAAGATCAACATTGATGAATTTGGGCAACAAATAAGAACAAATGAAATAAGTCGAATATATTCAGAAGCGTGTTTGGATATGTGTCGTGAGATGAAAATAAAGGCCATTGATATGTGGTCTGCAATTCAGAAAAGAGATGATTGGAGAGATGTTTGTTTCATTGATGGAGTTCATCTATCAACTGAGGGGAGTGAAATATTAACAAAGGAGATATTGAATGTCATAAAAGAAGCAGAGTGGGAACCAAGTCTATATTGGAAGTTAATGCCAGCTGAATTTGGAGAAGATTCACCTTATGATATGGTTTCTCTTGATGGGAAGACAAATATTAATTACTCCAATGTGCCTTTTCCTCAAGATGTAGAGTGGCCTTGA

Protein sequence

>Msa1024420

MGCILSTFQSSLSGWGAIKRVLPLHSGGAITRPKIVLFGSSIVQYSCYEGWGATLSHLYARKADIVLRGYAAWNSRRAVQVLDKIFPKNAIEQPSLVIVYFGGNDCIRPYPSGRGPHVPLQEYIENMRKIATHIMSLSHKTRIIFLSSPPINEAQIKINIDEFGQQIRTNEISRIYSEACLDMCREMKIKAIDMWSAIQKRDDWRDVCFIDGVHLSTEGSEILTKEILNVIKEAEWEPSLYWKLMPAEFGEDSPYDMVSLDGKTNINYSNVPFPQDVEWP*