AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0962290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0962290 MtrunA17_Chr6g0482081 93.678 522 33 0 1 522 1 522 0.0 1006
Msa0962290 MtrunA17_Chr6g0482131 84.942 518 77 1 1 518 1 517 0.0 939
Msa0962290 MtrunA17_Chr6g0482071 76.200 521 121 3 3 522 4 522 0.0 826
Msa0962290 MtrunA17_Chr2g0329201 67.121 514 161 3 1 513 1 507 0.0 729
Msa0962290 MtrunA17_Chr2g0329191 70.625 480 139 2 34 513 32 509 0.0 727
Msa0962290 MtrunA17_Chr3g0088441 70.000 480 143 1 35 514 37 515 0.0 726
Msa0962290 MtrunA17_Chr4g0033311 66.667 513 168 2 4 514 5 516 0.0 724
Msa0962290 MtrunA17_Chr4g0033401 67.787 506 158 2 6 511 8 508 0.0 715
Msa0962290 MtrunA17_Chr4g0033321 67.059 510 160 3 6 514 8 510 0.0 713
Msa0962290 MtrunA17_Chr4g0033271 67.843 510 159 3 3 512 6 510 0.0 712
Msa0962290 MtrunA17_Chr4g0033201 65.490 510 172 3 3 512 6 511 0.0 712
Msa0962290 MtrunA17_Chr4g0033331 68.378 487 153 1 35 521 38 523 0.0 709
Msa0962290 MtrunA17_Chr4g0033191 68.267 479 151 1 34 512 41 518 0.0 706
Msa0962290 MtrunA17_Chr4g0033341 62.963 513 184 4 2 513 36 543 0.0 682
Msa0962290 MtrunA17_Chr2g0329321 63.760 516 154 5 1 512 1 487 0.0 675
Msa0962290 MtrunA17_Chr4g0033261 64.343 502 152 3 14 514 19 494 0.0 665
Msa0962290 MtrunA17_Chr4g0033231 61.554 502 166 3 12 512 17 492 0.0 644
Msa0962290 MtrunA17_Chr5g0430451 60.795 528 162 5 1 513 1 498 0.0 629
Msa0962290 MtrunA17_Chr4g0010501 60.852 493 186 3 20 512 8 493 0.0 620
Msa0962290 MtrunA17_Chr3g0087261 56.695 478 200 4 35 511 36 507 0.0 571
Msa0962290 MtrunA17_Chr4g0006111 54.545 506 191 5 18 512 47 524 0.0 561
Msa0962290 MtrunA17_Chr4g0043091 54.150 506 223 6 12 512 1 502 0.0 553
Msa0962290 MtrunA17_Chr3g0087271 55.975 477 205 3 35 511 37 508 0.0 546
Msa0962290 MtrunA17_Chr4g0006131 55.123 488 181 7 36 513 42 501 0.0 535
Msa0962290 MtrunA17_Chr4g0042171 51.562 512 237 6 12 518 3 508 0.0 519
Msa0962290 MtrunA17_Chr6g0482941 51.081 509 236 7 6 514 18 513 1.41e-179 514
Msa0962290 MtrunA17_Chr6g0482951 52.401 479 220 6 36 514 43 513 9.71e-177 507
Msa0962290 MtrunA17_Chr3g0090111 48.958 480 230 5 33 512 16 480 8.83e-167 481
Msa0962290 MtrunA17_Chr3g0090131 49.064 481 227 6 34 512 19 483 2.67e-163 472
Msa0962290 MtrunA17_Chr4g0074561 49.260 473 236 4 41 511 40 510 1.53e-162 472
Msa0962290 MtrunA17_Chr2g0301231 55.024 418 152 6 104 512 1 391 2.13e-157 453
Msa0962290 MtrunA17_Chr4g0074551 48.218 477 239 8 41 514 55 526 7.98e-154 451
Msa0962290 MtrunA17_Chr2g0317841 44.628 484 264 4 28 511 24 503 1.72e-153 449
Msa0962290 MtrunA17_Chr2g0288071 44.466 524 286 5 1 522 32 552 2.25e-153 449
Msa0962290 MtrunA17_Chr2g0317821 45.041 484 262 4 28 511 24 503 4.32e-153 447
Msa0962290 MtrunA17_Chr2g0288021 44.231 520 281 8 1 517 1 514 3.55e-152 445
Msa0962290 MtrunA17_Chr7g0242681 46.708 486 231 8 36 514 38 502 4.51e-147 432
Msa0962290 MtrunA17_Chr7g0242691 46.362 481 243 5 35 514 30 496 7.29e-147 431
Msa0962290 MtrunA17_Chr4g0006971 44.513 483 251 6 34 514 25 492 6.53e-143 421
Msa0962290 MtrunA17_Chr5g0428831 42.885 506 263 9 11 512 6 489 8.20e-138 408
Msa0962290 MtrunA17_Chr1g0195611 42.262 504 268 7 11 512 6 488 3.28e-137 406
Msa0962290 MtrunA17_Chr3g0087201 57.186 334 137 2 180 513 17 344 3.56e-134 392
Msa0962290 MtrunA17_Chr7g0234111 42.015 526 273 10 1 515 31 535 2.89e-128 384
Msa0962290 MtrunA17_Chr5g0418871 58.140 301 123 2 55 355 2 299 9.11e-127 373
Msa0962290 MtrunA17_Chr7g0234091 41.571 522 273 10 1 511 31 531 8.59e-126 378
Msa0962290 MtrunA17_Chr7g0234131 43.697 476 248 7 37 511 76 532 2.38e-124 374
Msa0962290 MtrunA17_Chr1g0195641 46.173 392 189 6 38 423 29 404 1.35e-112 340
Msa0962290 MtrunA17_Chr7g0230651 44.565 368 187 5 91 458 26 376 1.52e-100 308
Msa0962290 MtrunA17_Chr3g0087191 75.862 145 35 0 35 179 21 165 6.86e-78 242
Msa0962290 MtrunA17_Chr7g0236731 45.382 249 128 3 125 372 28 269 1.60e-59 198
Msa0962290 MtrunA17_Chr7g0227561 38.577 267 129 4 38 303 48 280 8.15e-57 191
Msa0962290 MtrunA17_Chr5g0418861 60.440 91 35 1 423 512 1 91 2.45e-31 116
Msa0962290 MtrunA17_Chr4g0068871 24.939 409 235 11 100 503 183 524 1.37e-25 110
Msa0962290 MtrunA17_Chr8g0352881 47.917 96 50 0 262 357 57 152 2.09e-23 96.7
Msa0962290 MtrunA17_Chr8g0352881 48.571 70 35 1 45 114 7 75 1.69e-13 68.6
Msa0962290 MtrunA17_Chr6g0482231 51.852 81 21 1 1 81 1 63 2.76e-15 77.4
Msa0962290 MtrunA17_Chr7g0227591 54.717 53 24 0 459 511 13 65 7.66e-14 66.6
Msa0962290 MtrunA17_Chr7g0236741 41.379 58 34 0 459 516 10 67 9.50e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0962290 AT5G44640.1 54.743 506 215 4 17 514 5 504 0.0 580
Msa0962290 AT5G42260.1 55.622 498 213 4 12 507 6 497 0.0 577
Msa0962290 AT2G44450.1 55.102 490 214 2 25 514 20 503 0.0 576
Msa0962290 AT2G44480.1 55.187 482 214 2 32 513 31 510 0.0 572
Msa0962290 AT2G44480.3 55.187 482 214 2 32 513 62 541 0.0 572
Msa0962290 AT3G60130.1 56.485 478 201 3 36 512 30 501 0.0 562
Msa0962290 AT1G26560.1 54.357 482 215 4 32 511 28 506 0.0 536
Msa0962290 AT2G25630.1 50.688 509 227 4 7 514 1 486 0.0 531
Msa0962290 AT5G24550.1 49.419 516 251 7 1 512 1 510 0.0 527
Msa0962290 AT5G54570.1 52.599 481 224 3 33 511 27 505 0.0 526
Msa0962290 AT3G60140.1 49.608 510 251 6 12 517 1 508 0.0 525
Msa0962290 AT1G47600.1 53.320 482 212 5 31 511 40 509 0.0 522
Msa0962290 AT1G51470.1 53.527 482 211 5 31 511 40 509 0.0 520
Msa0962290 AT1G47600.2 52.905 482 213 5 31 511 40 508 0.0 519
Msa0962290 AT3G18080.1 53.556 478 215 5 36 513 39 509 2.77e-178 511
Msa0962290 AT3G60120.1 52.066 484 224 7 34 513 12 491 2.64e-177 510
Msa0962290 AT5G24540.1 49.421 518 250 8 1 513 1 511 4.96e-176 506
Msa0962290 AT3G18070.3 51.357 479 216 8 36 513 30 492 7.60e-173 497
Msa0962290 AT3G18070.1 51.357 479 222 8 36 513 30 498 4.62e-172 495
Msa0962290 AT2G44460.1 50.518 483 231 7 36 514 29 507 2.28e-171 496
Msa0962290 AT2G44470.3 48.041 485 245 6 36 516 29 510 1.63e-170 494
Msa0962290 AT3G60130.2 55.529 416 178 3 98 512 40 449 3.67e-168 484
Msa0962290 AT2G44490.1 49.174 484 237 7 35 512 13 493 8.71e-166 481
Msa0962290 AT5G25980.2 47.985 521 253 10 3 512 10 523 1.28e-165 481
Msa0962290 AT2G44480.2 52.927 410 191 2 104 513 1 408 1.43e-165 475
Msa0962290 AT5G36890.2 49.895 477 225 5 37 512 17 480 4.73e-164 474
Msa0962290 AT5G36890.1 49.895 477 225 5 37 512 17 480 8.54e-164 474
Msa0962290 AT5G26000.1 50.830 482 223 8 36 511 38 511 3.62e-160 466
Msa0962290 AT3G21370.1 47.942 486 242 8 34 512 31 512 1.82e-159 464
Msa0962290 AT5G54570.3 51.756 427 203 2 33 458 27 451 3.96e-159 460
Msa0962290 AT3G60130.3 53.606 416 175 4 98 512 40 438 5.20e-159 460
Msa0962290 AT2G32860.1 45.783 498 257 7 27 514 79 573 1.49e-155 457
Msa0962290 AT3G09260.1 46.612 487 252 7 33 515 32 514 1.73e-155 454
Msa0962290 AT1G75940.1 47.228 487 242 9 36 512 37 518 7.75e-155 452
Msa0962290 AT3G03640.1 44.231 520 275 8 1 512 1 513 5.71e-154 450
Msa0962290 AT2G32860.2 45.382 498 260 6 27 514 79 574 6.91e-154 453
Msa0962290 AT1G66280.1 45.809 513 264 9 11 515 8 514 1.86e-152 446
Msa0962290 AT1G61820.1 46.998 483 251 5 35 515 29 508 4.11e-152 445
Msa0962290 AT1G52400.3 45.068 517 265 11 5 512 10 516 9.10e-152 444
Msa0962290 AT1G52400.1 45.068 517 265 11 5 512 10 516 9.10e-152 444
Msa0962290 AT5G54570.2 51.707 410 194 3 104 511 1 408 1.79e-149 435
Msa0962290 AT5G28510.1 43.511 524 278 9 1 515 9 523 7.85e-149 437
Msa0962290 AT1G66270.1 47.023 487 247 8 34 515 34 514 9.16e-149 437
Msa0962290 AT1G61810.1 45.436 482 258 5 36 515 33 511 9.67e-149 436
Msa0962290 AT4G27830.1 44.358 514 263 9 12 521 1 495 5.61e-148 434
Msa0962290 AT5G24540.2 47.939 461 229 7 1 457 1 454 1.60e-147 431
Msa0962290 AT5G25980.3 47.742 465 227 8 3 458 10 467 6.02e-147 430
Msa0962290 AT5G25980.1 47.742 465 227 8 3 458 10 467 6.02e-147 430
Msa0962290 AT4G21760.2 44.813 482 255 7 41 520 59 531 1.35e-146 432
Msa0962290 AT1G66270.2 46.817 487 246 9 34 515 34 512 9.50e-146 429
Msa0962290 AT1G02850.2 45.417 480 238 7 37 512 27 486 1.94e-144 425
Msa0962290 AT2G44470.1 46.824 425 220 5 36 457 29 450 1.73e-143 421
Msa0962290 AT5G26000.2 51.054 427 197 6 36 458 38 456 2.65e-143 420
Msa0962290 AT3G60140.2 48.364 428 214 6 12 436 1 424 1.54e-142 418
Msa0962290 AT4G27820.1 45.473 486 243 7 33 515 20 486 1.52e-141 417
Msa0962290 AT1G61810.3 45.591 465 248 5 36 498 33 494 1.77e-141 419
Msa0962290 AT1G02850.5 43.539 503 237 8 37 512 27 509 7.64e-140 414
Msa0962290 AT4G21760.1 43.983 482 249 8 41 520 59 521 1.30e-139 414
Msa0962290 AT2G44450.2 52.793 358 163 2 157 514 1 352 6.43e-139 405
Msa0962290 AT1G02850.4 43.651 504 236 9 37 512 27 510 1.36e-138 410
Msa0962290 AT2G44480.4 59.683 315 125 2 32 346 62 374 1.76e-138 405
Msa0962290 AT3G62750.1 43.086 499 255 9 18 515 7 477 5.32e-135 400
Msa0962290 AT3G62750.2 43.086 499 255 9 18 515 33 503 1.70e-134 400
Msa0962290 AT1G02850.1 43.750 480 219 8 37 512 27 459 1.14e-133 396
Msa0962290 AT4G22100.1 44.583 480 243 9 37 512 23 483 3.24e-133 396
Msa0962290 AT1G60090.2 42.346 503 263 10 14 512 4 483 7.74e-132 393
Msa0962290 AT1G60090.1 41.420 507 269 10 14 512 4 490 8.52e-130 388
Msa0962290 AT1G45191.2 43.361 482 250 9 37 514 30 492 1.29e-129 387
Msa0962290 AT1G45191.6 43.182 484 253 9 37 514 30 497 1.99e-129 387
Msa0962290 AT1G45191.4 43.154 482 245 8 37 514 30 486 2.13e-129 387
Msa0962290 AT1G45191.1 42.915 494 252 10 37 514 30 509 2.92e-128 384
Msa0962290 AT1G52400.2 43.601 461 242 10 5 457 10 460 1.55e-126 377
Msa0962290 AT3G62740.1 41.152 486 258 9 34 515 21 482 9.96e-126 377
Msa0962290 AT2G44470.2 49.258 337 166 4 36 370 29 362 8.87e-123 365
Msa0962290 AT1G61810.5 44.282 411 224 5 107 515 4 411 1.28e-119 358
Msa0962290 AT1G02850.3 45.146 412 186 6 37 422 27 424 1.22e-118 357
Msa0962290 AT4G27830.2 44.550 422 215 7 104 521 1 407 3.21e-118 355
Msa0962290 AT3G18070.4 50.733 341 160 6 36 375 30 363 1.26e-117 352
Msa0962290 AT1G61810.4 44.987 389 210 4 36 422 33 419 1.46e-114 345
Msa0962290 AT2G44460.2 49.176 364 178 6 155 514 1 361 2.05e-114 346
Msa0962290 AT5G48375.1 42.257 452 176 10 34 476 36 411 2.82e-114 345
Msa0962290 AT3G62750.4 42.664 443 226 8 18 460 33 447 1.31e-113 344
Msa0962290 AT4G27820.2 44.578 415 213 6 104 515 1 401 4.40e-113 342
Msa0962290 AT4G27820.3 44.578 415 213 6 104 515 1 401 4.40e-113 342
Msa0962290 AT1G51490.1 50.430 349 157 7 43 389 27 361 1.09e-110 335
Msa0962290 AT3G18070.2 50.305 328 157 5 187 513 99 421 1.19e-108 330
Msa0962290 AT3G18070.2 61.905 63 23 1 36 98 30 91 1.84e-17 85.1
Msa0962290 AT3G62740.2 41.686 427 222 8 34 457 21 423 2.24e-108 330
Msa0962290 AT1G60270.1 48.943 331 157 4 36 366 24 342 5.87e-107 325
Msa0962290 AT1G45191.5 46.286 350 175 5 37 383 30 369 1.09e-106 325
Msa0962290 AT3G62750.7 46.765 340 163 5 18 357 7 328 2.87e-105 320
Msa0962290 AT3G62750.8 46.765 340 163 5 18 357 7 328 2.87e-105 320
Msa0962290 AT2G44480.5 49.175 303 152 2 209 511 2 302 3.55e-105 317
Msa0962290 AT1G45191.3 47.478 337 164 5 37 370 30 356 4.16e-105 321
Msa0962290 AT3G62750.6 41.646 413 219 7 104 515 1 392 1.34e-104 320
Msa0962290 AT3G62750.5 41.646 413 219 7 104 515 1 392 1.34e-104 320
Msa0962290 AT3G62750.3 46.765 340 163 5 18 357 33 354 2.37e-104 320
Msa0962290 AT1G61820.3 44.022 368 202 4 150 515 4 369 2.72e-103 315
Msa0962290 AT3G18070.7 49.682 314 152 5 201 513 1 309 1.26e-101 308
Msa0962290 AT1G61810.2 51.111 270 130 2 36 305 33 300 9.77e-93 285
Msa0962290 AT1G60270.2 49.042 261 125 3 106 366 3 255 3.79e-79 250
Msa0962290 AT3G18070.5 46.862 239 124 3 187 424 99 335 1.19e-69 227
Msa0962290 AT3G18070.5 61.905 63 23 1 36 98 30 91 9.01e-18 85.1
Msa0962290 AT3G18070.6 45.778 225 119 3 201 424 1 223 6.45e-63 206
Msa0962290 AT5G16580.1 39.726 292 152 8 182 468 27 299 2.78e-51 177
Msa0962290 AT3G06510.1 26.402 428 241 15 99 520 159 518 9.59e-28 117
Msa0962290 AT3G06510.2 26.682 446 251 18 99 520 159 552 2.70e-27 116

Find 105 sgRNAs with CRISPR-Local

Find 443 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTTTGCTTTAAAGAATT+TGG 0.149305 6_3:+85491744 Msa0962290:CDS
TATCAAGCAAAGCTTGTAAA+AGG 0.202527 6_3:+85493110 Msa0962290:CDS
AGGGATGGTGTGAATGTAAA+AGG 0.247212 6_3:+85494293 Msa0962290:intron
TTGATCTATATCACTGAAAA+TGG 0.261422 6_3:+85493728 Msa0962290:CDS
GAGGAAGGTCCCAATGAAAA+AGG 0.264707 6_3:-85491561 None:intergenic
TTGATGACTTCACTTAATTC+AGG 0.294272 6_3:-85493188 None:intergenic
GCCACTCTATGATACAAAAT+TGG 0.298973 6_3:+85492290 Msa0962290:CDS
TGATTATGAGTCACTATATA+GGG 0.301091 6_3:-85491906 None:intergenic
AAGAATGTATTGCAGGTATA+TGG 0.303911 6_3:+85493013 Msa0962290:intron
AGAGCCATTGATTTCATGTT+TGG 0.306421 6_3:+85492330 Msa0962290:CDS
AGCTTAGTGGAGGCGTAAAT+AGG 0.307780 6_3:+85491383 Msa0962290:CDS
GATGTGAGTTACACTATATT+TGG 0.308617 6_3:-85491619 None:intergenic
TGATGAATACCATCGTTATA+AGG 0.323190 6_3:+85490403 Msa0962290:CDS
GTGGAAGAGGACCAAGTATA+TGG 0.323224 6_3:+85487689 Msa0962290:CDS
GCCAAGCATGCTTATGTTGA+TGG 0.330838 6_3:+85491813 Msa0962290:CDS
AGGTGCATTAGTTGCATAAT+GGG 0.332976 6_3:-85493168 None:intergenic
AAATTTCAAAAGGGCAAGAT+AGG 0.333322 6_3:+85492240 Msa0962290:CDS
TTACACATGCAGGCTGCTTC+AGG 0.335032 6_3:+85493635 Msa0962290:intron
GATAACTTCGAATGGGGTTT+AGG 0.350327 6_3:+85494338 Msa0962290:CDS
AATGATCAAGGACATCAATA+TGG 0.355860 6_3:+85490850 Msa0962290:CDS
TTGATTATGAGTCACTATAT+AGG 0.356386 6_3:-85491907 None:intergenic
TGTCTACAAAACTAAGTATC+AGG 0.359104 6_3:+85491956 Msa0962290:CDS
TTAGGCTACACTTCGAGGTT+TGG 0.361866 6_3:+85494356 Msa0962290:CDS
TTTCTTACTTGGAAGTAGTC+TGG 0.382454 6_3:-85490900 None:intergenic
CAATCCTTTGTGTATCTTCA+AGG 0.390282 6_3:-85493959 None:intergenic
GCACATACCGTTGGGCCAAT+AGG 0.395361 6_3:-85493461 None:intergenic
TTGGCGATAGAGTAAAGAAT+TGG 0.397131 6_3:+85491763 Msa0962290:CDS
TCACTTGAAGATGAATATAA+TGG 0.411889 6_3:+85491586 Msa0962290:CDS
CAGGTGCATTAGTTGCATAA+TGG 0.412377 6_3:-85493169 None:intergenic
AAGTGCATCTGTGTTGTAGC+TGG 0.421551 6_3:-85493213 None:intergenic
AAACTTGACAGGTAAAATAA+AGG 0.423664 6_3:+85490355 Msa0962290:intron
AACAGCTTCATCAGCTTACC+AGG 0.455098 6_3:+85486548 Msa0962290:CDS
GCAGCAAATGTTGGTGGAAG+AGG 0.456824 6_3:+85487676 Msa0962290:CDS
GCTTAGTGGAGGCGTAAATA+GGG 0.457689 6_3:+85491384 Msa0962290:CDS
AATTGCGATTCTTAGTTATG+TGG 0.457795 6_3:+85486437 Msa0962290:CDS
TATATGGATCCATTGACAAT+TGG 0.458276 6_3:+85493029 Msa0962290:CDS
CAGCGCAATGGAATACCTAT+TGG 0.459924 6_3:+85493446 Msa0962290:CDS
TTATACGCAGAAATTTCAAA+AGG 0.461398 6_3:+85492230 Msa0962290:intron
AACAGGTCGTGAATACCCTT+TGG 0.468123 6_3:-85493674 None:intergenic
AAAATAAAGGACAGAAGTAA+TGG 0.469802 6_3:+85490368 Msa0962290:CDS
TGCCAGGACGAACATCGTCC+AGG 0.472398 6_3:-85491846 None:intergenic
GGGGTTTAGGCTACACTTCG+AGG 0.480196 6_3:+85494351 Msa0962290:CDS
CACCTGGACGATGTTCGTCC+TGG 0.480398 6_3:+85491844 Msa0962290:CDS
CAACATAAAATAGTTGCATA+TGG 0.481679 6_3:+85494455 Msa0962290:CDS
ATTGGTTGATAACTTCGAAT+GGG 0.482017 6_3:+85494331 Msa0962290:CDS
ATTGCAGAAGGAAAGCTTAG+TGG 0.486994 6_3:+85491370 Msa0962290:intron
AATCCTTTGTGTATCTTCAA+GGG 0.500154 6_3:-85493958 None:intergenic
TCCATCAACATAAGCATGCT+TGG 0.501327 6_3:-85491814 None:intergenic
GGATAGTCTCCAATTGTCAA+TGG 0.507092 6_3:-85493038 None:intergenic
CCATCCAAACATGAAATCAA+TGG 0.508555 6_3:-85492334 None:intergenic
ACTAAGGATCTCATGGAGCT+TGG 0.509919 6_3:-85493059 None:intergenic
TGGGAAACTACTACGATTGA+GGG 0.513826 6_3:-85486508 None:intergenic
GTTGATGGAAGCTTCGCACC+TGG 0.514214 6_3:+85491828 Msa0962290:CDS
TGGTTATCAATTTATCCAAA+GGG 0.514428 6_3:+85493659 Msa0962290:CDS
GGATAACATTAGTGTGTCAC+TGG 0.520216 6_3:+85492262 Msa0962290:CDS
ACTTTCACACATAATTATCC+AGG 0.520794 6_3:+85487715 Msa0962290:CDS
GTGGGAAACTACTACGATTG+AGG 0.525016 6_3:-85486509 None:intergenic
CAACCTCATCAATGAGCTGC+TGG 0.526527 6_3:+85491426 Msa0962290:CDS
AGCTCCATGAGATCCTTAGT+AGG 0.526973 6_3:+85493062 Msa0962290:CDS
ATCAAGCAAAGCTTGTAAAA+GGG 0.528319 6_3:+85493111 Msa0962290:CDS
CCATTGATTTCATGTTTGGA+TGG 0.528755 6_3:+85492334 Msa0962290:CDS
TATACGCAGAAATTTCAAAA+GGG 0.528876 6_3:+85492231 Msa0962290:intron
GCTTTCTCAAGAGGGAGTGT+TGG 0.529097 6_3:-85493936 None:intergenic
ATGGTTATCAATTTATCCAA+AGG 0.532166 6_3:+85493658 Msa0962290:CDS
ATCAATGAGCTGCTGGCCAA+AGG 0.533571 6_3:+85491433 Msa0962290:CDS
CATTGGTTGATAACTTCGAA+TGG 0.534148 6_3:+85494330 Msa0962290:CDS
TGGTAATCGACTCCCTACTA+AGG 0.537611 6_3:-85493075 None:intergenic
TGGCCAGCAGCTCATTGATG+AGG 0.539141 6_3:-85491429 None:intergenic
ACTCCCTACTAAGGATCTCA+TGG 0.543783 6_3:-85493066 None:intergenic
TGGAAGAGGACCAAGTATAT+GGG 0.544729 6_3:+85487690 Msa0962290:CDS
GGAAGATGTTGAAATGATCA+AGG 0.550576 6_3:+85490838 Msa0962290:intron
CATCTTCAAGTGACTGAGGA+AGG 0.557265 6_3:-85491576 None:intergenic
GCATGCTTGGCGAAGGCCCA+TGG 0.558759 6_3:-85491801 None:intergenic
CAATAGGTATTCCATTGCGC+TGG 0.561868 6_3:-85493445 None:intergenic
AACATAAGCATGCTTGGCGA+AGG 0.562738 6_3:-85491808 None:intergenic
CTAAGAATCGCAATTATTCG+TGG 0.568063 6_3:-85486429 None:intergenic
AAGTAGTCTGGACCAAGAGA+TGG 0.570160 6_3:-85490888 None:intergenic
GTGAAAGTATCCCATATACT+TGG 0.571422 6_3:-85487700 None:intergenic
TGGCAAAACTTGAATTGCAC+CGG 0.571841 6_3:+85491864 Msa0962290:CDS
CTTCAAGGGCTTTCTCAAGA+GGG 0.573600 6_3:-85493944 None:intergenic
TCTTCAAGGGCTTTCTCAAG+AGG 0.573816 6_3:-85493945 None:intergenic
GTTTAATCCAATAAAATCAA+AGG 0.577644 6_3:-85493135 None:intergenic
AATTTCAAAAGGGCAAGATA+GGG 0.579565 6_3:+85492241 Msa0962290:CDS
GGGATGGTGTGAATGTAAAA+GGG 0.580656 6_3:+85494294 Msa0962290:intron
GCTCCATGAGATCCTTAGTA+GGG 0.587979 6_3:+85493063 Msa0962290:CDS
AGTGCATCTGTGTTGTAGCT+GGG 0.591010 6_3:-85493212 None:intergenic
GAAGGTGCAGCAAATGTTGG+TGG 0.594191 6_3:+85487670 Msa0962290:CDS
GATCACACTGAATGAACCAT+GGG 0.595444 6_3:+85491785 Msa0962290:CDS
TTGGTTGATAACTTCGAATG+GGG 0.595551 6_3:+85494332 Msa0962290:CDS
TAAGAATCGCAATTATTCGT+GGG 0.604230 6_3:-85486428 None:intergenic
AACATTAGTGTGTCACTGGA+CGG 0.604605 6_3:+85492266 Msa0962290:CDS
TACTTCATAGATTACAACAA+TGG 0.610172 6_3:+85494383 Msa0962290:CDS
TTCAGTGGCAGAATCTCCAC+CGG 0.611444 6_3:-85491883 None:intergenic
ACATGCAGGCTGCTTCAGGA+TGG 0.613410 6_3:+85493639 Msa0962290:intron
TGGAATACCTATTGGCCCAA+CGG 0.614932 6_3:+85493454 Msa0962290:CDS
GGATCACACTGAATGAACCA+TGG 0.617345 6_3:+85491784 Msa0962290:CDS
CAAAACTTGAATTGCACCGG+TGG 0.620786 6_3:+85491867 Msa0962290:CDS
TATGAAGGTGCAGCAAATGT+TGG 0.622181 6_3:+85487667 Msa0962290:CDS
AGTCACTATATAGGGTTCAG+TGG 0.627438 6_3:-85491898 None:intergenic
AGTGGAGGCGTAAATAGGGA+AGG 0.646589 6_3:+85491388 Msa0962290:CDS
TATTCATCTTCAAGTGACTG+AGG 0.648641 6_3:-85491580 None:intergenic
AGTATTGAACCTTATAACGA+TGG 0.661351 6_3:-85490412 None:intergenic
AATCGTAGTAGTTTCCCACA+AGG 0.661482 6_3:+85486513 Msa0962290:CDS
GCAGAAGGAAAGCTTAGTGG+AGG 0.662311 6_3:+85491373 Msa0962290:intron
AAGCCCTTGAAGATACACAA+AGG 0.697689 6_3:+85493955 Msa0962290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATAATTTTTATTTTTTT+TGG + chr6_3:85487916-85487935 Msa0962290:intron 0.0%
!! AATTATTTCATTTAAAGAAA+TGG + chr6_3:85487869-85487888 Msa0962290:intron 10.0%
!!! CTTTATTTATTTTTTAGAAT+TGG - chr6_3:85489749-85489768 None:intergenic 10.0%
!!! CAATTCTAAAAAATAAATAA+AGG + chr6_3:85489747-85489766 Msa0962290:intron 10.0%
!! AAAAAGATGTATAATAAATA+GGG - chr6_3:85490601-85490620 None:intergenic 10.0%
!!! AAATAAAAACTTTTTTCTTA+TGG - chr6_3:85490974-85490993 None:intergenic 10.0%
!!! TTATGATATTTGATTATTTT+TGG - chr6_3:85491653-85491672 None:intergenic 10.0%
!! TTTATCGAAAAAAATATTTA+TGG + chr6_3:85492516-85492535 Msa0962290:intron 10.0%
!!! TATACAATTACATTTTTTTT+AGG + chr6_3:85493368-85493387 Msa0962290:intron 10.0%
!!! ATGTTTTTAATTTTTTTCAA+AGG + chr6_3:85493585-85493604 Msa0962290:intron 10.0%
!!! TGTTTTTAATTTTTTTCAAA+GGG + chr6_3:85493586-85493605 Msa0962290:intron 10.0%
!! AATAATAAATATAGTGTATT+GGG - chr6_3:85493758-85493777 None:intergenic 10.0%
!! AAATAATAAATATAGTGTAT+TGG - chr6_3:85493759-85493778 None:intergenic 10.0%
!!! TCATTAATTTAACTTTTTTT+TGG - chr6_3:85494076-85494095 None:intergenic 10.0%
!! CAAATAAAACTAAAATCTAA+GGG - chr6_3:85486764-85486783 None:intergenic 15.0%
!! TCAAATAAAACTAAAATCTA+AGG - chr6_3:85486765-85486784 None:intergenic 15.0%
!!! ATGTTAATGTAAATACTTTT+GGG - chr6_3:85487140-85487159 None:intergenic 15.0%
!!! GTAATTTATTTTATCTGTTT+TGG - chr6_3:85487195-85487214 None:intergenic 15.0%
!!! ATTTATTTTTCAGAACTATT+TGG - chr6_3:85487409-85487428 None:intergenic 15.0%
!! ATTTGATTAATATACTCTAT+CGG - chr6_3:85487557-85487576 None:intergenic 15.0%
!! AAAATTATATTATCTGTCAA+AGG - chr6_3:85487907-85487926 None:intergenic 15.0%
!! ATAATAATAAAAATTGCAAG+TGG + chr6_3:85487981-85488000 Msa0962290:intron 15.0%
!!! TTAATTTTTTATTGGCATAT+TGG + chr6_3:85488163-85488182 Msa0962290:intron 15.0%
!!! ATAATTAACATGAGTTTTTA+GGG + chr6_3:85488493-85488512 Msa0962290:intron 15.0%
!!! TAAAGATAGAAATTTTTTCT+TGG - chr6_3:85489046-85489065 None:intergenic 15.0%
!! TATATATATCTTTCAAAAAG+AGG + chr6_3:85489299-85489318 Msa0962290:intron 15.0%
!! TATATATATCTTTCAAAAAG+AGG + chr6_3:85489299-85489318 Msa0962290:intron 15.0%
!!! TTTTTGCTTATAAAAAAAGA+CGG - chr6_3:85489831-85489850 None:intergenic 15.0%
!!! ACATGCATTTAATTTTATAT+TGG + chr6_3:85490007-85490026 Msa0962290:intron 15.0%
!!! GATTTTTTTGCTTATATTTT+AGG + chr6_3:85490111-85490130 Msa0962290:intron 15.0%
!! AAAGAAATAATTAATGTAGT+TGG - chr6_3:85490568-85490587 None:intergenic 15.0%
!! AAAAGATGTATAATAAATAG+GGG - chr6_3:85490600-85490619 None:intergenic 15.0%
!! GAAAAAGATGTATAATAAAT+AGG - chr6_3:85490602-85490621 None:intergenic 15.0%
!! TGTTGTATTAGTATTAAAAA+AGG + chr6_3:85491224-85491243 Msa0962290:intron 15.0%
!! GTTGTATTAGTATTAAAAAA+GGG + chr6_3:85491225-85491244 Msa0962290:intron 15.0%
!! TAATCAAATATCATAAAGTT+AGG + chr6_3:85491657-85491676 Msa0962290:intron 15.0%
!! TATAAATTAAAGGAAAGTTT+AGG - chr6_3:85492215-85492234 None:intergenic 15.0%
!! TATAAACCTTAAATTATATG+TGG + chr6_3:85492370-85492389 Msa0962290:intron 15.0%
!! CAATTTCTATTTATATACAA+AGG + chr6_3:85492743-85492762 Msa0962290:intron 15.0%
!!! TGATATTATATTTTTTTCAC+AGG + chr6_3:85493422-85493441 Msa0962290:intron 15.0%
!! TATATTGTGAATCTATAAAT+AGG + chr6_3:85493894-85493913 Msa0962290:intron 15.0%
!!! TAATTTTTGTTATGTTTTGA+GGG - chr6_3:85494035-85494054 None:intergenic 15.0%
!!! TTAATTTTTGTTATGTTTTG+AGG - chr6_3:85494036-85494055 None:intergenic 15.0%
!! TATACAAAGTAGAAGAATAT+TGG - chr6_3:85486588-85486607 None:intergenic 20.0%
!! CATTGAATACATAATGTATT+TGG + chr6_3:85486982-85487001 Msa0962290:intron 20.0%
!! CATTCAATACTTAATGTATT+TGG - chr6_3:85487021-85487040 None:intergenic 20.0%
!!! CATGTTAATGTAAATACTTT+TGG - chr6_3:85487141-85487160 None:intergenic 20.0%
!!! CAAAAGTATTTACATTAACA+TGG + chr6_3:85487139-85487158 Msa0962290:intron 20.0%
!! CAGATAAAATAAATTACAAG+TGG + chr6_3:85487198-85487217 Msa0962290:intron 20.0%
!!! AAAAATAAATGTGTTGATCT+AGG + chr6_3:85487419-85487438 Msa0962290:intron 20.0%
!!! ATGAACAATTTTTAGTATGA+AGG + chr6_3:85487652-85487671 Msa0962290:intron 20.0%
!! TTAAACTAATACACAAACAA+TGG - chr6_3:85487755-85487774 None:intergenic 20.0%
!! TTGAAAGATGCATAAAATAA+AGG + chr6_3:85487797-85487816 Msa0962290:intron 20.0%
!! AATTAAATACTCCTACAATT+TGG - chr6_3:85488050-85488069 None:intergenic 20.0%
!! TAAGTATGTTCATATGAAAT+AGG - chr6_3:85488403-85488422 None:intergenic 20.0%
!!! GATAATTAACATGAGTTTTT+AGG + chr6_3:85488492-85488511 Msa0962290:intron 20.0%
!! TCATATTTATTTAAATAGGC+CGG + chr6_3:85488679-85488698 Msa0962290:intron 20.0%
!!! TCTGATCTTTTAATCTAAAT+AGG + chr6_3:85488730-85488749 Msa0962290:intron 20.0%
!!! CTTTATTTAAGAAAAAAACC+TGG + chr6_3:85488774-85488793 Msa0962290:intron 20.0%
!!! GTATATTCTATTTTTTCAAG+TGG - chr6_3:85488898-85488917 None:intergenic 20.0%
!!! AATTAATATGTCCTACTTTT+AGG - chr6_3:85489202-85489221 None:intergenic 20.0%
!! ATGATGTAACTTAAAAAGAT+GGG - chr6_3:85489420-85489439 None:intergenic 20.0%
!! TATGATGTAACTTAAAAAGA+TGG - chr6_3:85489421-85489440 None:intergenic 20.0%
!! TCAAGCATATTAATGTATTA+GGG - chr6_3:85489541-85489560 None:intergenic 20.0%
!! AGAATATCTACTTATTTGTT+TGG - chr6_3:85489675-85489694 None:intergenic 20.0%
!!! AAGACCATTTCTTTAAAAAA+TGG - chr6_3:85489700-85489719 None:intergenic 20.0%
!!! ATTTTTTAAAGAAATGGTCT+TGG + chr6_3:85489699-85489718 Msa0962290:intron 20.0%
!! GATGTAAAAATAATTCTCAT+TGG + chr6_3:85489940-85489959 Msa0962290:intron 20.0%
!!! TTCTCATTGGTTAAAAATTA+TGG + chr6_3:85489953-85489972 Msa0962290:intron 20.0%
!! CACAATAATAACATAAAAGT+TGG + chr6_3:85490053-85490072 Msa0962290:intron 20.0%
!!! TTTTTGCTTATATTTTAGGA+CGG + chr6_3:85490115-85490134 Msa0962290:intron 20.0%
!! TAAAAAATTGGTTAGAATCA+TGG - chr6_3:85490260-85490279 None:intergenic 20.0%
!!! TTCTAACCAATTTTTTATGT+TGG + chr6_3:85490263-85490282 Msa0962290:intron 20.0%
!!! CTTTTACCAACATAAAAAAT+TGG - chr6_3:85490272-85490291 None:intergenic 20.0%
!! GACAAAAAAAATTCTCAAAA+GGG - chr6_3:85490518-85490537 None:intergenic 20.0%
!! AGACAAAATTAATCATTGAA+AGG - chr6_3:85491492-85491511 None:intergenic 20.0%
!!! TTGATTATTTTTGGTCATAA+GGG - chr6_3:85491644-85491663 None:intergenic 20.0%
!!! TTTGATTATTTTTGGTCATA+AGG - chr6_3:85491645-85491664 None:intergenic 20.0%
!! AAAGAATTATATCAATTCAC+AGG + chr6_3:85491998-85492017 Msa0962290:intron 20.0%
!! AAGAATTATATCAATTCACA+GGG + chr6_3:85491999-85492018 Msa0962290:intron 20.0%
!!! TAAACTTGTTGGATTAATTT+TGG - chr6_3:85492094-85492113 None:intergenic 20.0%
!! AATTTCTGCGTATAAATTAA+AGG - chr6_3:85492225-85492244 None:intergenic 20.0%
!! TCAATTTACCTTAAAAATTG+TGG + chr6_3:85492627-85492646 Msa0962290:intron 20.0%
!!! TGAAATAACCACAATTTTTA+AGG - chr6_3:85492638-85492657 None:intergenic 20.0%
!! TATTTAAAAGAATGTATTGC+AGG + chr6_3:85493006-85493025 Msa0962290:intron 20.0%
!! GTTTAATCCAATAAAATCAA+AGG - chr6_3:85493138-85493157 None:intergenic 20.0%
!! CTTACTAATATACAATTTGA+TGG + chr6_3:85493863-85493882 Msa0962290:intron 20.0%
!! ATAGGTTAATTAGATAAAGA+AGG - chr6_3:85494231-85494250 None:intergenic 20.0%
! TTCCAAAAATAAAACCTTGT+GGG - chr6_3:85486530-85486549 None:intergenic 25.0%
! AGAAGAATATTGGAAATGAT+TGG - chr6_3:85486578-85486597 None:intergenic 25.0%
! TAATGTTATGCCATGTATTT+CGG - chr6_3:85486740-85486759 None:intergenic 25.0%
! TTGCCAATAAAATTTGTGTT+TGG - chr6_3:85486840-85486859 None:intergenic 25.0%
! TATTGGCAAACATTAATTTC+AGG + chr6_3:85486851-85486870 Msa0962290:intron 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - chr6_3:85487056-85487075 None:intergenic 25.0%
!!! TAAGCAAAAAAGCACTTTTT+AGG + chr6_3:85486957-85486976 Msa0962290:intron 25.0%
!! GGAGTATTATATAAACAAAG+AGG + chr6_3:85487081-85487100 Msa0962290:intron 25.0%
!! TTAATGTAAATACTTTTGGG+TGG - chr6_3:85487137-85487156 None:intergenic 25.0%
! TATGGTTGAAATCAAATCAA+GGG - chr6_3:85487280-85487299 None:intergenic 25.0%
! TTATGGTTGAAATCAAATCA+AGG - chr6_3:85487281-85487300 None:intergenic 25.0%
! TGAAACTAAACTCTTTCTTA+TGG - chr6_3:85487298-85487317 None:intergenic 25.0%
!!! TTCTGATTTTTCAACTCTAA+TGG - chr6_3:85487327-85487346 None:intergenic 25.0%
!! AAAAATCAGAAACCGTATTT+TGG + chr6_3:85487336-85487355 Msa0962290:intron 25.0%
! ATTCAGTTTACTAATTATGC+GGG - chr6_3:85487449-85487468 None:intergenic 25.0%
! CATTCAGTTTACTAATTATG+CGG - chr6_3:85487450-85487469 None:intergenic 25.0%
! AGATGCATAAAATAAAGGAA+TGG + chr6_3:85487802-85487821 Msa0962290:intron 25.0%
! TAAAATAAACATGCAAGTAG+TGG + chr6_3:85488010-85488029 Msa0962290:intron 25.0%
!!! ACTTTTTAGTACCAAATTGT+AGG + chr6_3:85488036-85488055 Msa0962290:intron 25.0%
! TTTCTTAAATAAAGAAGCCT+GGG - chr6_3:85488768-85488787 None:intergenic 25.0%
!! TTTTCTTAAATAAAGAAGCC+TGG - chr6_3:85488769-85488788 None:intergenic 25.0%
!! CACTTAATTTTACGCATATA+TGG - chr6_3:85488863-85488882 None:intergenic 25.0%
! CATATATGCGTAAAATTAAG+TGG + chr6_3:85488861-85488880 Msa0962290:intron 25.0%
!!! TTACTTAACTTGTGACATAA+GGG - chr6_3:85488943-85488962 None:intergenic 25.0%
! TTTATTAAATTGTGCCTTGA+GGG + chr6_3:85489067-85489086 Msa0962290:intron 25.0%
! TAACATTTCCCAATACAAAA+TGG + chr6_3:85489097-85489116 Msa0962290:intron 25.0%
! GTCAAGCATATTAATGTATT+AGG - chr6_3:85489542-85489561 None:intergenic 25.0%
! AGTTCCTTTAATGTGAAAAA+AGG + chr6_3:85489637-85489656 Msa0962290:intron 25.0%
!!! TTCACCTTTTTTCACATTAA+AGG - chr6_3:85489644-85489663 None:intergenic 25.0%
!!! CTCTCCATTTTTTAAAGAAA+TGG + chr6_3:85489693-85489712 Msa0962290:intron 25.0%
! TTTCCATGAAACTTATTTCA+AGG - chr6_3:85489920-85489939 None:intergenic 25.0%
!!! GACACTTTATTGACTTTTAA+GGG - chr6_3:85490179-85490198 None:intergenic 25.0%
!!! AGACACTTTATTGACTTTTA+AGG - chr6_3:85490180-85490199 None:intergenic 25.0%
! AAACTTGACAGGTAAAATAA+AGG + chr6_3:85490355-85490374 Msa0962290:intron 25.0%
! AAAATAAAGGACAGAAGTAA+TGG + chr6_3:85490368-85490387 Msa0962290:CDS 25.0%
! ACACACAAATTAAAGAATCA+TGG - chr6_3:85490452-85490471 None:intergenic 25.0%
!! TCAAAAGGGTCTTATAATTA+AGG - chr6_3:85490504-85490523 None:intergenic 25.0%
! GGACAAAAAAAATTCTCAAA+AGG - chr6_3:85490519-85490538 None:intergenic 25.0%
! ATGTAGTTGGAAATAGTAAA+GGG - chr6_3:85490555-85490574 None:intergenic 25.0%
! AATGTAGTTGGAAATAGTAA+AGG - chr6_3:85490556-85490575 None:intergenic 25.0%
!!! ATTTTATCCTTTAAGAGAGA+GGG - chr6_3:85490665-85490684 None:intergenic 25.0%
!!! AATTTTATCCTTTAAGAGAG+AGG - chr6_3:85490666-85490685 None:intergenic 25.0%
! AGACATTATTGATATAATGC+AGG + chr6_3:85490817-85490836 Msa0962290:intron 25.0%
!!! GGCTAAGAAACATTTTATTT+TGG + chr6_3:85490927-85490946 Msa0962290:intron 25.0%
!! TGTCATATTTGAGTTTAACA+CGG + chr6_3:85491054-85491073 Msa0962290:intron 25.0%
! TAAAACACCCTCATTAATTA+TGG + chr6_3:85491132-85491151 Msa0962290:intron 25.0%
!! AATAAATAAGAGTGTGTTAG+TGG + chr6_3:85491186-85491205 Msa0962290:intron 25.0%
!! ATAAATAAGAGTGTGTTAGT+GGG + chr6_3:85491187-85491206 Msa0962290:intron 25.0%
! TATTTCATCCTTCTCTTAAT+AGG - chr6_3:85491290-85491309 None:intergenic 25.0%
! TCACTTGAAGATGAATATAA+TGG + chr6_3:85491586-85491605 Msa0962290:CDS 25.0%
! TACATATGGTAATAGTTAGA+GGG - chr6_3:85491701-85491720 None:intergenic 25.0%
! TGATTATGAGTCACTATATA+GGG - chr6_3:85491909-85491928 None:intergenic 25.0%
! TTGATTATGAGTCACTATAT+AGG - chr6_3:85491910-85491929 None:intergenic 25.0%
! TTATACGCAGAAATTTCAAA+AGG + chr6_3:85492230-85492249 Msa0962290:intron 25.0%
! TATACGCAGAAATTTCAAAA+GGG + chr6_3:85492231-85492250 Msa0962290:intron 25.0%
! TGAGTTCCACATATAATTTA+AGG - chr6_3:85492379-85492398 None:intergenic 25.0%
! CTAGACATTAAACTCTTAAA+GGG + chr6_3:85492414-85492433 Msa0962290:intron 25.0%
! TAGACATTAAACTCTTAAAG+GGG + chr6_3:85492415-85492434 Msa0962290:intron 25.0%
!!! ATTGTTGACATTTTTTTCAG+AGG + chr6_3:85492465-85492484 Msa0962290:intron 25.0%
! GGTTAACTTAGTTAATTAGA+TGG + chr6_3:85492599-85492618 Msa0962290:intron 25.0%
! ATGGTTATCAATTTATCCAA+AGG + chr6_3:85493658-85493677 Msa0962290:CDS 25.0%
! TGGTTATCAATTTATCCAAA+GGG + chr6_3:85493659-85493678 Msa0962290:CDS 25.0%
!!! TTATTTTAGTGTAGATCAAC+AGG - chr6_3:85493694-85493713 None:intergenic 25.0%
!! TTTTCAGTGATATAGATCAA+TGG - chr6_3:85493728-85493747 None:intergenic 25.0%
! TTGATCTATATCACTGAAAA+TGG + chr6_3:85493728-85493747 Msa0962290:CDS 25.0%
! TGTGAATCTATAAATAGGTA+TGG + chr6_3:85493899-85493918 Msa0962290:intron 25.0%
!!! ATGTATCCAATTTTTTTACC+AGG + chr6_3:85494273-85494292 Msa0962290:intron 25.0%
!!! TGTATCCAATTTTTTTACCA+GGG + chr6_3:85494274-85494293 Msa0962290:intron 25.0%
! TACTTCATAGATTACAACAA+TGG + chr6_3:85494383-85494402 Msa0962290:CDS 25.0%
!!! ACATTTTTGGATATCTTTTG+AGG - chr6_3:85494409-85494428 None:intergenic 25.0%
! CAACATAAAATAGTTGCATA+TGG + chr6_3:85494455-85494474 Msa0962290:CDS 25.0%
TAAGAATCGCAATTATTCGT+GGG - chr6_3:85486431-85486450 None:intergenic 30.0%
AATTGCGATTCTTAGTTATG+TGG + chr6_3:85486437-85486456 Msa0962290:CDS 30.0%
!!! TTCCCACAAGGTTTTATTTT+TGG + chr6_3:85486525-85486544 Msa0962290:CDS 30.0%
GTTCCAAAAATAAAACCTTG+TGG - chr6_3:85486531-85486550 None:intergenic 30.0%
GTAATGATATGTACAACGAA+AGG + chr6_3:85486697-85486716 Msa0962290:intron 30.0%
AATGTTATGCCATGTATTTC+GGG - chr6_3:85486739-85486758 None:intergenic 30.0%
! CAGCCAAACACAAATTTTAT+TGG + chr6_3:85486834-85486853 Msa0962290:intron 30.0%
TGTTTATATAATACTCCCTC+TGG - chr6_3:85487078-85487097 None:intergenic 30.0%
!! TTTTTCAACTCTAATGGCTA+AGG - chr6_3:85487321-85487340 None:intergenic 30.0%
!!! AAACCGTATTTTGGAATACA+CGG + chr6_3:85487345-85487364 Msa0962290:intron 30.0%
ACTTTCACACATAATTATCC+AGG + chr6_3:85487715-85487734 Msa0962290:CDS 30.0%
!! ATGGATAAAAGAAAAGTACC+TGG - chr6_3:85487736-85487755 None:intergenic 30.0%
TTATTATAGCATGTATCGTG+AGG - chr6_3:85487968-85487987 None:intergenic 30.0%
! AGGTTTTTAAACAGATTAGC+AGG - chr6_3:85488383-85488402 None:intergenic 30.0%
TTTAAGAAAAAAACCTGGTC+TGG + chr6_3:85488779-85488798 Msa0962290:intron 30.0%
!! GTTACTTAACTTGTGACATA+AGG - chr6_3:85488944-85488963 None:intergenic 30.0%
GTTTATTAAATTGTGCCTTG+AGG + chr6_3:85489066-85489085 Msa0962290:intron 30.0%
TTTCCCAATACAAAATGGTT+TGG + chr6_3:85489102-85489121 Msa0962290:intron 30.0%
! AGACCAAACCATTTTGTATT+GGG - chr6_3:85489108-85489127 None:intergenic 30.0%
!!! TTGAGCTATTTCTGAGTTTT+GGG - chr6_3:85489144-85489163 None:intergenic 30.0%
!!! ATTGAGCTATTTCTGAGTTT+TGG - chr6_3:85489145-85489164 None:intergenic 30.0%
TCTCAAAAATTCGAACAAAG+TGG - chr6_3:85489603-85489622 None:intergenic 30.0%
TGCTTATAAAAAAAGACGGA+GGG - chr6_3:85489827-85489846 None:intergenic 30.0%
TTGCTTATAAAAAAAGACGG+AGG - chr6_3:85489828-85489847 None:intergenic 30.0%
AACCAATACTTAGTGATTTG+AGG + chr6_3:85489876-85489895 Msa0962290:intron 30.0%
TACCTCAAATCACTAAGTAT+TGG - chr6_3:85489881-85489900 None:intergenic 30.0%
TCTCCTTGAAATAAGTTTCA+TGG + chr6_3:85489914-85489933 Msa0962290:intron 30.0%
! GAGGGAGTATATATTTGTAT+TGG + chr6_3:85490137-85490156 Msa0962290:intron 30.0%
TTCCCTTTATGTTATAGTGT+TGG + chr6_3:85490216-85490235 Msa0962290:intron 30.0%
CACCAACACTATAACATAAA+GGG - chr6_3:85490221-85490240 None:intergenic 30.0%
AGTTTAGAAGTAGAATGTGA+TGG - chr6_3:85490340-85490359 None:intergenic 30.0%
ATTCTACTTCTAAACTTGAC+AGG + chr6_3:85490344-85490363 Msa0962290:intron 30.0%
TGATGAATACCATCGTTATA+AGG + chr6_3:85490403-85490422 Msa0962290:CDS 30.0%
! AGTATTGAACCTTATAACGA+TGG - chr6_3:85490415-85490434 None:intergenic 30.0%
TTAAAGAATCATGGACATGT+TGG - chr6_3:85490443-85490462 None:intergenic 30.0%
! AAGGGTCTTATAATTAAGGA+CGG - chr6_3:85490500-85490519 None:intergenic 30.0%
! GTAAAGGGGTCTTATAAAAA+GGG - chr6_3:85490540-85490559 None:intergenic 30.0%
! AGTAAAGGGGTCTTATAAAA+AGG - chr6_3:85490541-85490560 None:intergenic 30.0%
TGTAGTTGGAAATAGTAAAG+GGG - chr6_3:85490554-85490573 None:intergenic 30.0%
! AATAACGGGAATTAAGATAG+TGG - chr6_3:85490730-85490749 None:intergenic 30.0%
ATTCCCGTTATTGTTTCAAA+AGG + chr6_3:85490738-85490757 Msa0962290:intron 30.0%
TTCCCGTTATTGTTTCAAAA+GGG + chr6_3:85490739-85490758 Msa0962290:intron 30.0%
AATGATCAAGGACATCAATA+TGG + chr6_3:85490850-85490869 Msa0962290:CDS 30.0%
! CTTATAGATTTTCCATCTCT+TGG + chr6_3:85490876-85490895 Msa0962290:CDS 30.0%
TACTTCCAAGTAAGAAACTA+GGG + chr6_3:85490906-85490925 Msa0962290:intron 30.0%
CCACTAACCATAATTAATGA+GGG - chr6_3:85491142-85491161 None:intergenic 30.0%
TCCACTAACCATAATTAATG+AGG - chr6_3:85491143-85491162 None:intergenic 30.0%
ATTACTTGTCTAATTGCAGA+AGG + chr6_3:85491358-85491377 Msa0962290:intron 30.0%
TCTATTGCATCTATCAATGT+AGG + chr6_3:85491520-85491539 Msa0962290:intron 30.0%
GATGTGAGTTACACTATATT+TGG - chr6_3:85491622-85491641 None:intergenic 30.0%
CTACATATGGTAATAGTTAG+AGG - chr6_3:85491702-85491721 None:intergenic 30.0%
CTCTAACTATTACCATATGT+AGG + chr6_3:85491700-85491719 Msa0962290:intron 30.0%
TCGAAAATCATTCCTACATA+TGG - chr6_3:85491715-85491734 None:intergenic 30.0%
!! GAGCTTTGCTTTAAAGAATT+TGG + chr6_3:85491744-85491763 Msa0962290:CDS 30.0%
TGTCTACAAAACTAAGTATC+AGG + chr6_3:85491956-85491975 Msa0962290:CDS 30.0%
AAATTTCAAAAGGGCAAGAT+AGG + chr6_3:85492240-85492259 Msa0962290:CDS 30.0%
AATTTCAAAAGGGCAAGATA+GGG + chr6_3:85492241-85492260 Msa0962290:CDS 30.0%
! TCCAATTTTGTATCATAGAG+TGG - chr6_3:85492294-85492313 None:intergenic 30.0%
! CCTTTAAGAGTTTAATGTCT+AGG - chr6_3:85492416-85492435 None:intergenic 30.0%
CCTAGACATTAAACTCTTAA+AGG + chr6_3:85492413-85492432 Msa0962290:intron 30.0%
GATATGGGTGTTTAAAAAAG+TGG - chr6_3:85492546-85492565 None:intergenic 30.0%
GCTAATCACGTGTAAAAATA+TGG + chr6_3:85492578-85492597 Msa0962290:intron 30.0%
!! TAGTGATTAGTGGATTACTT+AGG - chr6_3:85492847-85492866 None:intergenic 30.0%
GCAAATAGATTAGTGATTAG+TGG - chr6_3:85492857-85492876 None:intergenic 30.0%
AAGAATGTATTGCAGGTATA+TGG + chr6_3:85493013-85493032 Msa0962290:intron 30.0%
TATATGGATCCATTGACAAT+TGG + chr6_3:85493029-85493048 Msa0962290:CDS 30.0%
!! GCTTGATATTTTGAGAACTT+TGG - chr6_3:85493098-85493117 None:intergenic 30.0%
TATCAAGCAAAGCTTGTAAA+AGG + chr6_3:85493110-85493129 Msa0962290:CDS 30.0%
ATCAAGCAAAGCTTGTAAAA+GGG + chr6_3:85493111-85493130 Msa0962290:CDS 30.0%
!! AAAGGGTCCTTTGATTTTAT+TGG + chr6_3:85493128-85493147 Msa0962290:CDS 30.0%
! TTGATGACTTCACTTAATTC+AGG - chr6_3:85493191-85493210 None:intergenic 30.0%
AATCCTTTGTGTATCTTCAA+GGG - chr6_3:85493961-85493980 None:intergenic 30.0%
!!! ATGTAAAAGGGTATTTTGCA+TGG + chr6_3:85494306-85494325 Msa0962290:CDS 30.0%
!! ATTGGTTGATAACTTCGAAT+GGG + chr6_3:85494331-85494350 Msa0962290:CDS 30.0%
CTAAGAATCGCAATTATTCG+TGG - chr6_3:85486432-85486451 None:intergenic 35.0%
TGTGTTTGGCTGAAAATCAT+GGG - chr6_3:85486826-85486845 None:intergenic 35.0%
TTGTGTTTGGCTGAAAATCA+TGG - chr6_3:85486827-85486846 None:intergenic 35.0%
CTAAAATGATATACTCCCTC+CGG + chr6_3:85486925-85486944 Msa0962290:intron 35.0%
TTGCTTATAAATGTGACCAG+AGG + chr6_3:85487059-85487078 Msa0962290:intron 35.0%
TGCTTATAAATGTGACCAGA+GGG + chr6_3:85487060-85487079 Msa0962290:intron 35.0%
!!! TATCTGTTTTGGCTCTTTGT+GGG - chr6_3:85487184-85487203 None:intergenic 35.0%
!!! TTATCTGTTTTGGCTCTTTG+TGG - chr6_3:85487185-85487204 None:intergenic 35.0%
TTAGATACAGTTACCATGAC+TGG - chr6_3:85487253-85487272 None:intergenic 35.0%
TGACCGTGTATTCCAAAATA+CGG - chr6_3:85487351-85487370 None:intergenic 35.0%
!! TTTGGGTTTTATGGAAGGAA+AGG - chr6_3:85487376-85487395 None:intergenic 35.0%
!! GTGAAAGTATCCCATATACT+TGG - chr6_3:85487703-85487722 None:intergenic 35.0%
! AGGAATGGTACTTATCGATT+AGG + chr6_3:85487817-85487836 Msa0962290:intron 35.0%
! ATGGTACTTATCGATTAGGT+TGG + chr6_3:85487821-85487840 Msa0962290:intron 35.0%
! AACCCATAAGTTTTTGCGTA+GGG + chr6_3:85488245-85488264 Msa0962290:intron 35.0%
!!! GTCGAGCAAGACTTTTTTTA+AGG + chr6_3:85488283-85488302 Msa0962290:intron 35.0%
CTAAAAAGTAAGTCTACGAC+AGG - chr6_3:85488327-85488346 None:intergenic 35.0%
!!! CTGTCGTAGACTTACTTTTT+AGG + chr6_3:85488325-85488344 Msa0962290:intron 35.0%
ATAGGTTTCTATAAAAGCCC+AGG + chr6_3:85488748-85488767 Msa0962290:intron 35.0%
ACGCATATATGGATGAGAAT+AGG - chr6_3:85488852-85488871 None:intergenic 35.0%
!! AATGTTAATTTGTGCCCTCA+AGG - chr6_3:85489084-85489103 None:intergenic 35.0%
! GAGACCAAACCATTTTGTAT+TGG - chr6_3:85489109-85489128 None:intergenic 35.0%
CTCAATGTTGCGATTTCATT+TGG + chr6_3:85489159-85489178 Msa0962290:intron 35.0%
TGAACTAGAGACCTAAAAGT+AGG + chr6_3:85489188-85489207 Msa0962290:intron 35.0%
!!! TTGCTTATATTTTAGGACGG+AGG + chr6_3:85490118-85490137 Msa0962290:intron 35.0%
!!! TGCTTATATTTTAGGACGGA+GGG + chr6_3:85490119-85490138 Msa0962290:intron 35.0%
CCACCAACACTATAACATAA+AGG - chr6_3:85490222-85490241 None:intergenic 35.0%
! CCTTTATGTTATAGTGTTGG+TGG + chr6_3:85490219-85490238 Msa0962290:intron 35.0%
!!! TGATGGTGTTTTGTTTGAAC+TGG - chr6_3:85490323-85490342 None:intergenic 35.0%
GGAAGATGTTGAAATGATCA+AGG + chr6_3:85490838-85490857 Msa0962290:intron 35.0%
TTTCTTACTTGGAAGTAGTC+TGG - chr6_3:85490903-85490922 None:intergenic 35.0%
CTACTTCCAAGTAAGAAACT+AGG + chr6_3:85490905-85490924 Msa0962290:intron 35.0%
TACTACATCTATCTCACAAC+AGG + chr6_3:85491031-85491050 Msa0962290:intron 35.0%
CCCTCATTAATTATGGTTAG+TGG + chr6_3:85491139-85491158 Msa0962290:intron 35.0%
AGATGACACCTATTAAGAGA+AGG + chr6_3:85491279-85491298 Msa0962290:intron 35.0%
AGTTCATATGTGATGACCTT+TGG - chr6_3:85491452-85491471 None:intergenic 35.0%
CAATGAAAAAGGGTCACAAA+GGG - chr6_3:85491553-85491572 None:intergenic 35.0%
!! CTTTGTGACCCTTTTTCATT+GGG + chr6_3:85491552-85491571 Msa0962290:CDS 35.0%
TATTCATCTTCAAGTGACTG+AGG - chr6_3:85491583-85491602 None:intergenic 35.0%
TTGGCGATAGAGTAAAGAAT+TGG + chr6_3:85491763-85491782 Msa0962290:CDS 35.0%
CTCTCGCTATATAAACTTGT+TGG - chr6_3:85492105-85492124 None:intergenic 35.0%
GCCACTCTATGATACAAAAT+TGG + chr6_3:85492290-85492309 Msa0962290:CDS 35.0%
!! AGAGCCATTGATTTCATGTT+TGG + chr6_3:85492330-85492349 Msa0962290:CDS 35.0%
CCATCCAAACATGAAATCAA+TGG - chr6_3:85492337-85492356 None:intergenic 35.0%
!! CCATTGATTTCATGTTTGGA+TGG + chr6_3:85492334-85492353 Msa0962290:CDS 35.0%
! CAATGAGCTACACCATTTTA+TGG - chr6_3:85492449-85492468 None:intergenic 35.0%
AGCGATCAATATGGTGATAT+GGG - chr6_3:85492561-85492580 None:intergenic 35.0%
TAGCGATCAATATGGTGATA+TGG - chr6_3:85492562-85492581 None:intergenic 35.0%
TATTGTGCAAGTAATCACAC+AGG + chr6_3:85492784-85492803 Msa0962290:intron 35.0%
TCACTACATCTTCAAACATG+TGG - chr6_3:85492933-85492952 None:intergenic 35.0%
AGGTGCATTAGTTGCATAAT+GGG - chr6_3:85493171-85493190 None:intergenic 35.0%
CTACACTATATTACACATGC+AGG + chr6_3:85493625-85493644 Msa0962290:intron 35.0%
CAATCCTTTGTGTATCTTCA+AGG - chr6_3:85493962-85493981 None:intergenic 35.0%
CATATATACACACACGCAAT+AGG - chr6_3:85494249-85494268 None:intergenic 35.0%
!!! TCCAATTTTTTTACCAGGGA+TGG + chr6_3:85494278-85494297 Msa0962290:intron 35.0%
ACCATCCCTGGTAAAAAAAT+TGG - chr6_3:85494282-85494301 None:intergenic 35.0%
!! CATTGGTTGATAACTTCGAA+TGG + chr6_3:85494330-85494349 Msa0962290:CDS 35.0%
!! TTGGTTGATAACTTCGAATG+GGG + chr6_3:85494332-85494351 Msa0962290:CDS 35.0%
ATCCAAAAATGTCAGCTATC+TGG + chr6_3:85494417-85494436 Msa0962290:CDS 35.0%
! AACCAGATAGCTGACATTTT+TGG - chr6_3:85494422-85494441 None:intergenic 35.0%
TGGGAAACTACTACGATTGA+GGG - chr6_3:85486511-85486530 None:intergenic 40.0%
AATCGTAGTAGTTTCCCACA+AGG + chr6_3:85486513-85486532 Msa0962290:CDS 40.0%
! TTGGAAATGATTGGAGTACC+TGG - chr6_3:85486569-85486588 None:intergenic 40.0%
! CGATTTGTTCCCGAAATACA+TGG + chr6_3:85486727-85486746 Msa0962290:intron 40.0%
GTGTTTGGCTGAAAATCATG+GGG - chr6_3:85486825-85486844 None:intergenic 40.0%
TGCTTATAAATGTGACCGGA+GGG - chr6_3:85486943-85486962 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG - chr6_3:85486944-85486963 None:intergenic 40.0%
!! TGTGGGTGTTGTTTCTTGAT+TGG - chr6_3:85487167-85487186 None:intergenic 40.0%
!! CTCTGTTTGGGTTTTATGGA+AGG - chr6_3:85487381-85487400 None:intergenic 40.0%
CTTCCATAAAACCCAAACAG+AGG + chr6_3:85487379-85487398 Msa0962290:intron 40.0%
!! TATTTGGTGTGCCTCTGTTT+GGG - chr6_3:85487393-85487412 None:intergenic 40.0%
! TATGAAGGTGCAGCAAATGT+TGG + chr6_3:85487667-85487686 Msa0962290:CDS 40.0%
TGGAAGAGGACCAAGTATAT+GGG + chr6_3:85487690-85487709 Msa0962290:CDS 40.0%
!! GTACTTATCGATTAGGTTGG+TGG + chr6_3:85487824-85487843 Msa0962290:intron 40.0%
! CAACCCATAAGTTTTTGCGT+AGG + chr6_3:85488244-85488263 Msa0962290:intron 40.0%
! ACCCATAAGTTTTTGCGTAG+GGG + chr6_3:85488246-85488265 Msa0962290:intron 40.0%
ACCCCTACGCAAAAACTTAT+GGG - chr6_3:85488250-85488269 None:intergenic 40.0%
! ATAAGTTTTTGCGTAGGGGT+GGG + chr6_3:85488250-85488269 Msa0962290:intron 40.0%
TAAGGCTTAAGCCTGACATA+TGG + chr6_3:85488301-85488320 Msa0962290:intron 40.0%
ATTCAAAAAGCCTCTTAGGC+CGG - chr6_3:85488701-85488720 None:intergenic 40.0%
GACCATTCAAAAAGCCTCTT+AGG - chr6_3:85488705-85488724 None:intergenic 40.0%
!! CGGAGGGAGTACTATATATT+TGG - chr6_3:85489811-85489830 None:intergenic 40.0%
AGAATCATGGACATGTTGGA+GGG - chr6_3:85490439-85490458 None:intergenic 40.0%
AAGAATCATGGACATGTTGG+AGG - chr6_3:85490440-85490459 None:intergenic 40.0%
! GGTCTTATAATTAAGGACGG+AGG - chr6_3:85490497-85490516 None:intergenic 40.0%
AAACCAACCCTCTCTCTTAA+AGG + chr6_3:85490655-85490674 Msa0962290:intron 40.0%
! TATCCTTTAAGAGAGAGGGT+TGG - chr6_3:85490661-85490680 None:intergenic 40.0%
!!! GGCCCTTTTGAAACAATAAC+GGG - chr6_3:85490744-85490763 None:intergenic 40.0%
!!! GGGCCCTTTTGAAACAATAA+CGG - chr6_3:85490745-85490764 None:intergenic 40.0%
TTCAAAAGGGCCCTATAATC+AGG + chr6_3:85490752-85490771 Msa0962290:intron 40.0%
TCAAAAGGGCCCTATAATCA+GGG + chr6_3:85490753-85490772 Msa0962290:intron 40.0%
TACCTTCGTCCCTGATTATA+GGG - chr6_3:85490765-85490784 None:intergenic 40.0%
CTTAGCCCTAGTTTCTTACT+TGG - chr6_3:85490914-85490933 None:intergenic 40.0%
ATTGCAGAAGGAAAGCTTAG+TGG + chr6_3:85491370-85491389 Msa0962290:intron 40.0%
CCAATGAAAAAGGGTCACAA+AGG - chr6_3:85491554-85491573 None:intergenic 40.0%
!! CCTTTGTGACCCTTTTTCAT+TGG + chr6_3:85491551-85491570 Msa0962290:CDS 40.0%
AGGAAGGTCCCAATGAAAAA+GGG - chr6_3:85491563-85491582 None:intergenic 40.0%
GATCACACTGAATGAACCAT+GGG + chr6_3:85491785-85491804 Msa0962290:CDS 40.0%
TCCATCAACATAAGCATGCT+TGG - chr6_3:85491817-85491836 None:intergenic 40.0%
TGGCAAAACTTGAATTGCAC+CGG + chr6_3:85491864-85491883 Msa0962290:CDS 40.0%
AGTCACTATATAGGGTTCAG+TGG - chr6_3:85491901-85491920 None:intergenic 40.0%
GGATAACATTAGTGTGTCAC+TGG + chr6_3:85492262-85492281 Msa0962290:CDS 40.0%
! AACATTAGTGTGTCACTGGA+CGG + chr6_3:85492266-85492285 Msa0962290:CDS 40.0%
CACGTGATTAGCGATCAATA+TGG - chr6_3:85492570-85492589 None:intergenic 40.0%
GGATAGTCTCCAATTGTCAA+TGG - chr6_3:85493041-85493060 None:intergenic 40.0%
CAGGTGCATTAGTTGCATAA+TGG - chr6_3:85493172-85493191 None:intergenic 40.0%
ATTCTCATGCACATACCGTT+GGG - chr6_3:85493472-85493491 None:intergenic 40.0%
TATTCTCATGCACATACCGT+TGG - chr6_3:85493473-85493492 None:intergenic 40.0%
AAGCCCTTGAAGATACACAA+AGG + chr6_3:85493955-85493974 Msa0962290:CDS 40.0%
! TTTTACATTCACACCATCCC+TGG - chr6_3:85494294-85494313 None:intergenic 40.0%
AGGGATGGTGTGAATGTAAA+AGG + chr6_3:85494293-85494312 Msa0962290:intron 40.0%
GGGATGGTGTGAATGTAAAA+GGG + chr6_3:85494294-85494313 Msa0962290:intron 40.0%
!! AGGGTATTTTGCATGGTCAT+TGG + chr6_3:85494313-85494332 Msa0962290:CDS 40.0%
GATAACTTCGAATGGGGTTT+AGG + chr6_3:85494338-85494357 Msa0962290:CDS 40.0%
GTGGGAAACTACTACGATTG+AGG - chr6_3:85486512-85486531 None:intergenic 45.0%
AACAGCTTCATCAGCTTACC+AGG + chr6_3:85486548-85486567 Msa0962290:CDS 45.0%
!! TTGCTTTTGCATGCCTTGTG+CGG - chr6_3:85487113-85487132 None:intergenic 45.0%
AGTGGACGCTCATACAAAGA+AGG + chr6_3:85487216-85487235 Msa0962290:intron 45.0%
GTGGACGCTCATACAAAGAA+GGG + chr6_3:85487217-85487236 Msa0962290:intron 45.0%
TGGACGCTCATACAAAGAAG+GGG + chr6_3:85487218-85487237 Msa0962290:intron 45.0%
GATACAGTTACCATGACTGG+TGG - chr6_3:85487250-85487269 None:intergenic 45.0%
!! GTGCCTCTGTTTGGGTTTTA+TGG - chr6_3:85487385-85487404 None:intergenic 45.0%
!! CTATTTGGTGTGCCTCTGTT+TGG - chr6_3:85487394-85487413 None:intergenic 45.0%
GTGGAAGAGGACCAAGTATA+TGG + chr6_3:85487689-85487708 Msa0962290:CDS 45.0%
!! TATCGATTAGGTTGGTGGCT+TGG + chr6_3:85487829-85487848 Msa0962290:intron 45.0%
CACCCCTACGCAAAAACTTA+TGG - chr6_3:85488251-85488270 None:intergenic 45.0%
! CATAAGTTTTTGCGTAGGGG+TGG + chr6_3:85488249-85488268 Msa0962290:intron 45.0%
! TAAGTTTTTGCGTAGGGGTG+GGG + chr6_3:85488251-85488270 Msa0962290:intron 45.0%
GGTCGTATCAGGCTTTCAAA+AGG - chr6_3:85488362-85488381 None:intergenic 45.0%
ACAGATTAGCAGGTCGTATC+AGG - chr6_3:85488373-85488392 None:intergenic 45.0%
TTTAAATAGGCCGGCCTAAG+AGG + chr6_3:85488688-85488707 Msa0962290:intron 45.0%
! GGCCTAAGAGGCTTTTTGAA+TGG + chr6_3:85488700-85488719 Msa0962290:intron 45.0%
! GAGGCTTTTTGAATGGTCTG+TGG + chr6_3:85488707-85488726 Msa0962290:intron 45.0%
TGGATGAGAATAGGTCAGAC+CGG - chr6_3:85488843-85488862 None:intergenic 45.0%
TGGTTCTTAACTAGTGCCCT+GGG - chr6_3:85489791-85489810 None:intergenic 45.0%
! TTGGTTCTTAACTAGTGCCC+TGG - chr6_3:85489792-85489811 None:intergenic 45.0%
CTACCTTCGTCCCTGATTAT+AGG - chr6_3:85490766-85490785 None:intergenic 45.0%
AAGTAGTCTGGACCAAGAGA+TGG - chr6_3:85490891-85490910 None:intergenic 45.0%
GAGGAAGGTCCCAATGAAAA+AGG - chr6_3:85491564-85491583 None:intergenic 45.0%
CATCTTCAAGTGACTGAGGA+AGG - chr6_3:85491579-85491598 None:intergenic 45.0%
GGATCACACTGAATGAACCA+TGG + chr6_3:85491784-85491803 Msa0962290:CDS 45.0%
AACATAAGCATGCTTGGCGA+AGG - chr6_3:85491811-85491830 None:intergenic 45.0%
GCCAAGCATGCTTATGTTGA+TGG + chr6_3:85491813-85491832 Msa0962290:CDS 45.0%
!! GGTGCAATTCAAGTTTTGCC+AGG - chr6_3:85491865-85491884 None:intergenic 45.0%
CAAAACTTGAATTGCACCGG+TGG + chr6_3:85491867-85491886 Msa0962290:CDS 45.0%
AGGGTGCATGTCTTAGACTT+GGG + chr6_3:85492018-85492037 Msa0962290:intron 45.0%
ACTAAGGATCTCATGGAGCT+TGG - chr6_3:85493062-85493081 None:intergenic 45.0%
AGCTCCATGAGATCCTTAGT+AGG + chr6_3:85493062-85493081 Msa0962290:CDS 45.0%
GCTCCATGAGATCCTTAGTA+GGG + chr6_3:85493063-85493082 Msa0962290:CDS 45.0%
ACTCCCTACTAAGGATCTCA+TGG - chr6_3:85493069-85493088 None:intergenic 45.0%
! TGGTAATCGACTCCCTACTA+AGG - chr6_3:85493078-85493097 None:intergenic 45.0%
AGTGCATCTGTGTTGTAGCT+GGG - chr6_3:85493215-85493234 None:intergenic 45.0%
AAGTGCATCTGTGTTGTAGC+TGG - chr6_3:85493216-85493235 None:intergenic 45.0%
CAATAGGTATTCCATTGCGC+TGG - chr6_3:85493448-85493467 None:intergenic 45.0%
CAGCGCAATGGAATACCTAT+TGG + chr6_3:85493446-85493465 Msa0962290:CDS 45.0%
TGGAATACCTATTGGCCCAA+CGG + chr6_3:85493454-85493473 Msa0962290:CDS 45.0%
AACAGGTCGTGAATACCCTT+TGG - chr6_3:85493677-85493696 None:intergenic 45.0%
CTTCAAGGGCTTTCTCAAGA+GGG - chr6_3:85493947-85493966 None:intergenic 45.0%
TCTTCAAGGGCTTTCTCAAG+AGG - chr6_3:85493948-85493967 None:intergenic 45.0%
TTAGGCTACACTTCGAGGTT+TGG + chr6_3:85494356-85494375 Msa0962290:CDS 45.0%
!!! TTAATGATTTTTTTTTTTAA+GGG - chr6_3:85488147-85488166 None:intergenic 5.0%
!!! ATTAATGATTTTTTTTTTTA+AGG - chr6_3:85488148-85488167 None:intergenic 5.0%
!!! AAAAATCATTAATTTTTTAT+TGG + chr6_3:85488155-85488174 Msa0962290:intron 5.0%
!! TTATTCATATTTATTTAAAT+AGG + chr6_3:85488675-85488694 Msa0962290:intron 5.0%
!!! AATTCTAAAAAATAAATAAA+GGG + chr6_3:85489748-85489767 Msa0962290:intron 5.0%
!! AATTTATAATAGTTATTAAT+CGG + chr6_3:85491313-85491332 Msa0962290:intron 5.0%
GCTGAAAATCATGGGGTGAC+GGG - chr6_3:85486818-85486837 None:intergenic 50.0%
GGCTGAAAATCATGGGGTGA+CGG - chr6_3:85486819-85486838 None:intergenic 50.0%
! TGCTTTTGCATGCCTTGTGC+GGG - chr6_3:85487112-85487131 None:intergenic 50.0%
GGACGCTCATACAAAGAAGG+GGG + chr6_3:85487219-85487238 Msa0962290:intron 50.0%
! GAAGGTGCAGCAAATGTTGG+TGG + chr6_3:85487670-85487689 Msa0962290:CDS 50.0%
! GCAGCAAATGTTGGTGGAAG+AGG + chr6_3:85487676-85487695 Msa0962290:CDS 50.0%
TCTACGACAGGCCATATGTC+AGG - chr6_3:85488315-85488334 None:intergenic 50.0%
TAATGTTAACCAGTGCCCCC+AGG + chr6_3:85489771-85489790 Msa0962290:intron 50.0%
AATGTTAACCAGTGCCCCCA+GGG + chr6_3:85489772-85489791 Msa0962290:intron 50.0%
GTTCTTAACTAGTGCCCTGG+GGG - chr6_3:85489789-85489808 None:intergenic 50.0%
GGTTCTTAACTAGTGCCCTG+GGG - chr6_3:85489790-85489809 None:intergenic 50.0%
GCAGAAGGAAAGCTTAGTGG+AGG + chr6_3:85491373-85491392 Msa0962290:intron 50.0%
CAACCTCATCAATGAGCTGC+TGG + chr6_3:85491426-85491445 Msa0962290:CDS 50.0%
ATCAATGAGCTGCTGGCCAA+AGG + chr6_3:85491433-85491452 Msa0962290:CDS 50.0%
TTCAGTGGCAGAATCTCCAC+CGG - chr6_3:85491886-85491905 None:intergenic 50.0%
CAGGGTGCATGTCTTAGACT+TGG + chr6_3:85492017-85492036 Msa0962290:intron 50.0%
GGGGAACGCTGACCATAAAA+TGG + chr6_3:85492434-85492453 Msa0962290:intron 50.0%
! TTTTTCACAGGCCAGCGCAA+TGG + chr6_3:85493434-85493453 Msa0962290:intron 50.0%
TTACACATGCAGGCTGCTTC+AGG + chr6_3:85493635-85493654 Msa0962290:intron 50.0%
! GCTTTCTCAAGAGGGAGTGT+TGG - chr6_3:85493939-85493958 None:intergenic 50.0%
AAAGAGGAATGCCCCGCACA+AGG + chr6_3:85487097-85487116 Msa0962290:intron 55.0%
! GCTTTTGCATGCCTTGTGCG+GGG - chr6_3:85487111-85487130 None:intergenic 55.0%
! TTTTGCGTAGGGGTGGGGAT+AGG + chr6_3:85488256-85488275 Msa0962290:intron 55.0%
ATAGGTCAGACCGGTCTGCA+GGG - chr6_3:85488834-85488853 None:intergenic 55.0%
AATAGGTCAGACCGGTCTGC+AGG - chr6_3:85488835-85488854 None:intergenic 55.0%
GGCCCTATAATCAGGGACGA+AGG + chr6_3:85490760-85490779 Msa0962290:intron 55.0%
TGGCCAGCAGCTCATTGATG+AGG - chr6_3:85491432-85491451 None:intergenic 55.0%
! GTTGATGGAAGCTTCGCACC+TGG + chr6_3:85491828-85491847 Msa0962290:CDS 55.0%
GCACATACCGTTGGGCCAAT+AGG - chr6_3:85493464-85493483 None:intergenic 55.0%
ACATGCAGGCTGCTTCAGGA+TGG + chr6_3:85493639-85493658 Msa0962290:intron 55.0%
GGGGTTTAGGCTACACTTCG+AGG + chr6_3:85494351-85494370 Msa0962290:CDS 55.0%
GGGGGTGATTCCACCAGTCA+TGG + chr6_3:85487237-85487256 Msa0962290:intron 60.0%
ACGACAGGTCAAGCCAGACC+AGG - chr6_3:85488795-85488814 None:intergenic 60.0%
! GGTCTGGCTTGACCTGTCGT+AGG + chr6_3:85488795-85488814 Msa0962290:intron 60.0%
GGCTTGACCTGTCGTAGGCT+AGG + chr6_3:85488800-85488819 Msa0962290:intron 60.0%
CACCTGGACGATGTTCGTCC+TGG + chr6_3:85491844-85491863 Msa0962290:CDS 60.0%
TGCCAGGACGAACATCGTCC+AGG - chr6_3:85491849-85491868 None:intergenic 60.0%
CGTAGGGGTGGGGATAGGCT+AGG + chr6_3:85488261-85488280 Msa0962290:intron 65.0%
CCTACGGCCTAGCCTACGAC+AGG - chr6_3:85488810-85488829 None:intergenic 65.0%
CCTGTCGTAGGCTAGGCCGT+AGG + chr6_3:85488807-85488826 Msa0962290:intron 65.0%
GACCGGTCTGCAGGGACCTA+CGG - chr6_3:85488826-85488845 None:intergenic 65.0%
! AACTAGTGCCCTGGGGGCAC+TGG - chr6_3:85489783-85489802 None:intergenic 65.0%
GCATGCTTGGCGAAGGCCCA+TGG - chr6_3:85491804-85491823 None:intergenic 65.0%
GGCCGTAGGTCCCTGCAGAC+CGG + chr6_3:85488821-85488840 Msa0962290:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 85486405 85494490 85486405 ID=Msa0962290;Name=Msa0962290
chr6_3 mRNA 85486405 85494490 85486405 ID=Msa0962290-mRNA-1;Parent=Msa0962290;Name=Msa0962290-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.33|0.15|1|1|1|13|0|522
chr6_3 exon 85486405 85486569 85486405 ID=Msa0962290-mRNA-1:exon:15338;Parent=Msa0962290-mRNA-1
chr6_3 exon 85487667 85487736 85487667 ID=Msa0962290-mRNA-1:exon:15339;Parent=Msa0962290-mRNA-1
chr6_3 exon 85490366 85490424 85490366 ID=Msa0962290-mRNA-1:exon:15340;Parent=Msa0962290-mRNA-1
chr6_3 exon 85490839 85490914 85490839 ID=Msa0962290-mRNA-1:exon:15341;Parent=Msa0962290-mRNA-1
chr6_3 exon 85491377 85491454 85491377 ID=Msa0962290-mRNA-1:exon:15342;Parent=Msa0962290-mRNA-1
chr6_3 exon 85491542 85491629 85491542 ID=Msa0962290-mRNA-1:exon:15343;Parent=Msa0962290-mRNA-1
chr6_3 exon 85491722 85491977 85491722 ID=Msa0962290-mRNA-1:exon:15344;Parent=Msa0962290-mRNA-1
chr6_3 exon 85492240 85492355 85492240 ID=Msa0962290-mRNA-1:exon:15345;Parent=Msa0962290-mRNA-1
chr6_3 exon 85493028 85493248 85493028 ID=Msa0962290-mRNA-1:exon:15346;Parent=Msa0962290-mRNA-1
chr6_3 exon 85493444 85493475 85493444 ID=Msa0962290-mRNA-1:exon:15347;Parent=Msa0962290-mRNA-1
chr6_3 exon 85493647 85493749 85493647 ID=Msa0962290-mRNA-1:exon:15348;Parent=Msa0962290-mRNA-1
chr6_3 exon 85493916 85494024 85493916 ID=Msa0962290-mRNA-1:exon:15349;Parent=Msa0962290-mRNA-1
chr6_3 exon 85494295 85494490 85494295 ID=Msa0962290-mRNA-1:exon:15350;Parent=Msa0962290-mRNA-1
chr6_3 CDS 85486405 85486569 85486405 ID=Msa0962290-mRNA-1:cds;Parent=Msa0962290-mRNA-1
chr6_3 CDS 85487667 85487736 85487667 ID=Msa0962290-mRNA-1:cds;Parent=Msa0962290-mRNA-1
chr6_3 CDS 85490366 85490424 85490366 ID=Msa0962290-mRNA-1:cds;Parent=Msa0962290-mRNA-1
chr6_3 CDS 85490839 85490914 85490839 ID=Msa0962290-mRNA-1:cds;Parent=Msa0962290-mRNA-1
chr6_3 CDS 85491377 85491454 85491377 ID=Msa0962290-mRNA-1:cds;Parent=Msa0962290-mRNA-1
chr6_3 CDS 85491542 85491629 85491542 ID=Msa0962290-mRNA-1:cds;Parent=Msa0962290-mRNA-1
chr6_3 CDS 85491722 85491977 85491722 ID=Msa0962290-mRNA-1:cds;Parent=Msa0962290-mRNA-1
chr6_3 CDS 85492240 85492355 85492240 ID=Msa0962290-mRNA-1:cds;Parent=Msa0962290-mRNA-1
chr6_3 CDS 85493028 85493248 85493028 ID=Msa0962290-mRNA-1:cds;Parent=Msa0962290-mRNA-1
chr6_3 CDS 85493444 85493475 85493444 ID=Msa0962290-mRNA-1:cds;Parent=Msa0962290-mRNA-1
chr6_3 CDS 85493647 85493749 85493647 ID=Msa0962290-mRNA-1:cds;Parent=Msa0962290-mRNA-1
chr6_3 CDS 85493916 85494024 85493916 ID=Msa0962290-mRNA-1:cds;Parent=Msa0962290-mRNA-1
chr6_3 CDS 85494295 85494490 85494295 ID=Msa0962290-mRNA-1:cds;Parent=Msa0962290-mRNA-1
Gene Sequence

>Msa0962290

ATGGCACTAAATGTTCTTCTTCTCCCACGAATAATTGCGATTCTTAGTTATGTGGCTATAATTGAAGCTACAATATTGTTAACTAATGATGATATTAACAATTCCCTCAATCGTAGTAGTTTCCCACAAGGTTTTATTTTTGGAACAGCTTCATCAGCTTACCAGTATGAAGGTGCAGCAAATGTTGGTGGAAGAGGACCAAGTATATGGGATACTTTCACACATAATTATCCAGGTAAAATAAAGGACAGAAGTAATGGAGATATAGCTGTTGATGAATACCATCGTTATAAGGAAGATGTTGAAATGATCAAGGACATCAATATGGATGCTTATAGATTTTCCATCTCTTGGTCCAGACTACTTCCAAAAGGAAAGCTTAGTGGAGGCGTAAATAGGGAAGGAATTAAGTATTACAACAACCTCATCAATGAGCTGCTGGCCAAAGGTCTTCAACCCTTTGTGACCCTTTTTCATTGGGACCTTCCTCAGTCACTTGAAGATGAATATAATGGCTTTTTAAGTCCAAATATAGTGAATGATTTTCGAGACTATGCAGAGCTTTGCTTTAAAGAATTTGGCGATAGAGTAAAGAATTGGATCACACTGAATGAACCATGGGCCTTCGCCAAGCATGCTTATGTTGATGGAAGCTTCGCACCTGGACGATGTTCGTCCTGGCAAAACTTGAATTGCACCGGTGGAGATTCTGCCACTGAACCCTATATAGTGACTCATAATCAAATACTTGCTCATGCATTTGCTGTCAATGTCTACAAAACTAAGTATCAGAAATTTCAAAAGGGCAAGATAGGGATAACATTAGTGTGTCACTGGACGGTGCCACTCTATGATACAAAATTGGATCATCATGCTTCACAAAGAGCCATTGATTTCATGTTTGGATGGTATATGGATCCATTGACAATTGGAGACTATCCAAGCTCCATGAGATCCTTAGTAGGGAGTCGATTACCAAAGTTCTCAAAATATCAAGCAAAGCTTGTAAAAGGGTCCTTTGATTTTATTGGATTAAACTATTACACTTCCCATTATGCAACTAATGCACCTGAATTAAGTGAAGTCATCAAGCCCAGCTACAACACAGATGCACTTGTTAGTTTTACAAGCCAGCGCAATGGAATACCTATTGGCCCAACGGCTGCTTCAGGATGGTTATCAATTTATCCAAAGGGTATTCACGACCTGTTGATCTACACTAAAATAAAGTACAACAATCCATTGATCTATATCACTGAAAATGGTATGGATGACTTTAATGATCCAACACTCCCTCTTGAGAAAGCCCTTGAAGATACACAAAGGATTGATTACTATTATGATCATCTCTACTATCTTCAAACTGCAATAAAGGATGGTGTGAATGTAAAAGGGTATTTTGCATGGTCATTGGTTGATAACTTCGAATGGGGTTTAGGCTACACTTCGAGGTTTGGAATATACTTCATAGATTACAACAATGGCCTCAAAAGATATCCAAAAATGTCAGCTATCTGGTTTAAGAATTTTCTACAACATAAAATAGTTGCATATGGTGATTCGCGCTAA
Protein sequence

>Msa0962290

MALNVLLLPRIIAILSYVAIIEATILLTNDDINNSLNRSSFPQGFIFGTASSAYQYEGAANVGGRGPSIWDTFTHNYPGKIKDRSNGDIAVDEYHRYKEDVEMIKDINMDAYRFSISWSRLLPKGKLSGGVNREGIKYYNNLINELLAKGLQPFVTLFHWDLPQSLEDEYNGFLSPNIVNDFRDYAELCFKEFGDRVKNWITLNEPWAFAKHAYVDGSFAPGRCSSWQNLNCTGGDSATEPYIVTHNQILAHAFAVNVYKTKYQKFQKGKIGITLVCHWTVPLYDTKLDHHASQRAIDFMFGWYMDPLTIGDYPSSMRSLVGSRLPKFSKYQAKLVKGSFDFIGLNYYTSHYATNAPELSEVIKPSYNTDALVSFTSQRNGIPIGPTAASGWLSIYPKGIHDLLIYTKIKYNNPLIYITENGMDDFNDPTLPLEKALEDTQRIDYYYDHLYYLQTAIKDGVNVKGYFAWSLVDNFEWGLGYTSRFGIYFIDYNNGLKRYPKMSAIWFKNFLQHKIVAYGDSR*