AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0038010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038010 MtrunA17_Chr1g0201331 100.000 194 0 0 1 194 107 300 4.60e-138 387
Msa0038010 MtrunA17_Chr4g0001221 72.928 181 49 0 1 181 108 288 1.12e-91 270
Msa0038010 MtrunA17_Chr2g0333771 67.677 198 60 2 1 194 113 310 3.35e-90 266
Msa0038010 MtrunA17_Chr8g0379911 51.309 191 80 3 8 194 78 259 9.71e-61 190
Msa0038010 MtrunA17_Chr7g0217331 48.913 184 94 0 1 184 70 253 7.12e-60 188
Msa0038010 MtrunA17_Chr2g0284601 51.579 190 81 3 8 194 30 211 2.01e-59 185
Msa0038010 MtrunA17_Chr8g0379901 50.000 196 87 3 2 194 73 260 3.45e-59 186
Msa0038010 MtrunA17_Chr2g0284581 51.579 190 81 3 8 194 78 259 4.78e-59 186
Msa0038010 MtrunA17_Chr2g0284611 49.490 196 94 2 2 194 72 265 2.62e-57 181
Msa0038010 MtrunA17_Chr2g0284631 53.801 171 78 1 8 177 131 301 2.75e-57 183
Msa0038010 MtrunA17_Chr2g0284591 49.474 190 85 3 8 194 76 257 1.57e-56 179
Msa0038010 MtrunA17_Chr4g0001161 67.500 120 39 0 1 120 21 140 6.96e-52 163
Msa0038010 MtrunA17_Chr4g0001111 72.727 110 30 0 1 110 108 217 7.14e-51 164
Msa0038010 MtrunA17_Chr1g0184541 46.739 184 98 0 4 187 98 281 1.29e-49 162
Msa0038010 MtrunA17_Chr5g0426131 43.523 193 99 3 1 188 68 255 2.70e-49 160
Msa0038010 MtrunA17_Chr5g0435051 46.784 171 90 1 8 177 79 249 1.73e-46 154
Msa0038010 MtrunA17_Chr4g0044201 45.263 190 80 4 8 194 77 245 5.16e-46 152
Msa0038010 MtrunA17_Chr3g0079421 45.930 172 90 2 8 177 65 235 2.29e-41 140
Msa0038010 MtrunA17_Chr4g0001151 63.964 111 25 1 1 111 21 116 1.13e-37 132
Msa0038010 MtrunA17_Chr4g0001121 64.835 91 24 2 110 194 10 98 1.91e-32 112
Msa0038010 MtrunA17_Chr2g0331261 39.037 187 99 5 4 181 61 241 1.32e-29 109
Msa0038010 MtrunA17_Chr8g0340161 40.341 176 89 6 4 169 60 229 2.14e-26 101
Msa0038010 MtrunA17_Chr1g0146161 38.122 181 96 5 11 181 63 237 2.72e-24 95.9
Msa0038010 MtrunA17_Chr1g0146171 37.356 174 95 4 5 169 57 225 7.16e-24 94.7
Msa0038010 MtrunA17_Chr1g0212671 35.000 180 109 5 12 185 69 246 6.16e-22 89.7
Msa0038010 MtrunA17_Chr5g0399341 37.017 181 97 4 20 192 76 247 3.97e-21 87.4
Msa0038010 MtrunA17_Chr7g0222791 32.778 180 113 5 12 185 69 246 1.51e-18 80.5
Msa0038010 MtrunA17_Chr6g0478191 30.994 171 112 3 20 187 78 245 1.43e-17 78.2
Msa0038010 MtrunA17_Chr4g0030861 34.682 173 95 6 12 173 69 234 1.68e-17 77.8
Msa0038010 MtrunA17_Chr1g0188771 32.749 171 109 3 20 187 78 245 8.59e-17 75.9
Msa0038010 MtrunA17_Chr2g0326621 30.841 214 114 6 2 181 73 286 2.20e-16 75.5
Msa0038010 MtrunA17_Chr4g0020781 32.418 182 103 5 20 193 36 205 4.21e-16 73.2
Msa0038010 MtrunA17_Chr3g0145671 29.101 189 121 5 1 176 73 261 3.76e-13 66.2
Msa0038010 MtrunA17_Chr7g0264961 30.000 180 119 4 12 186 69 246 1.14e-12 64.7
Msa0038010 MtrunA17_Chr4g0029071 26.961 204 126 5 1 181 81 284 4.66e-12 63.2
Msa0038010 MtrunA17_Chr8g0386961 31.034 174 103 6 21 179 108 279 1.66e-11 61.6
Msa0038010 MtrunA17_Chr5g0397391 29.885 174 105 6 21 179 108 279 2.52e-11 61.2
Msa0038010 MtrunA17_Chr4g0006001 29.651 172 107 6 21 179 112 282 9.05e-11 59.7
Msa0038010 MtrunA17_Chr3g0113211 27.500 160 102 4 21 166 111 270 9.55e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0038010 AT4G10380.1 81.959 194 35 0 1 194 111 304 5.03e-115 329
Msa0038010 AT1G80760.1 69.072 194 59 1 1 194 113 305 1.94e-91 270
Msa0038010 AT5G37820.1 50.794 189 90 2 8 194 83 270 1.49e-60 190
Msa0038010 AT5G37820.2 50.794 189 90 2 8 194 119 306 3.54e-60 191
Msa0038010 AT4G19030.1 50.746 201 85 3 2 194 89 283 2.64e-59 187
Msa0038010 AT5G37810.1 50.265 189 91 2 8 194 83 270 3.21e-59 187
Msa0038010 AT4G18910.1 48.756 201 89 3 2 194 86 280 5.63e-57 181
Msa0038010 AT1G31885.2 52.247 178 77 2 8 177 29 206 6.91e-55 175
Msa0038010 AT1G31885.1 52.247 178 77 2 8 177 83 260 1.33e-54 176
Msa0038010 AT3G06100.2 45.810 179 96 1 4 181 34 212 8.42e-44 145
Msa0038010 AT3G06100.1 46.328 177 94 1 4 179 82 258 1.34e-43 147
Msa0038010 AT2G34390.2 42.347 196 99 4 1 186 39 230 5.99e-42 142
Msa0038010 AT2G34390.1 42.564 195 98 4 1 185 81 271 1.71e-41 142
Msa0038010 AT4G19030.3 51.471 136 58 2 2 129 89 224 4.86e-36 125
Msa0038010 AT4G18910.2 52.672 131 54 2 8 130 92 222 1.25e-35 124
Msa0038010 AT3G16240.1 40.351 171 87 5 4 165 60 224 2.38e-27 104
Msa0038010 AT2G29870.1 50.980 102 49 1 84 185 22 122 4.60e-27 100
Msa0038010 AT4G19030.2 48.718 117 52 2 2 110 89 205 2.63e-25 98.2
Msa0038010 AT4G17340.1 40.476 168 85 5 12 169 67 229 5.49e-25 98.2
Msa0038010 AT5G47450.1 39.247 186 91 7 12 180 67 247 7.30e-25 97.8
Msa0038010 AT3G06100.3 39.855 138 82 1 43 179 40 177 2.30e-23 92.4
Msa0038010 AT2G25810.1 39.394 165 84 5 15 169 67 225 7.87e-23 92.4
Msa0038010 AT2G34390.3 39.286 140 72 3 1 130 81 217 6.42e-21 86.7
Msa0038010 AT2G36830.1 37.500 176 88 7 12 176 69 233 5.51e-19 82.0
Msa0038010 AT4G01470.1 33.514 185 105 6 12 185 69 246 7.40e-19 81.6
Msa0038010 AT3G26520.1 32.418 182 109 5 12 184 70 246 1.27e-18 81.3
Msa0038010 AT1G17810.1 32.749 171 111 3 20 187 86 255 8.19e-18 79.3
Msa0038010 AT1G73190.1 31.176 170 111 3 20 186 86 252 1.41e-15 73.2
Msa0038010 AT2G34390.4 37.705 122 63 3 1 112 81 199 2.48e-14 69.3
Msa0038010 AT5G60660.1 28.042 189 123 4 1 176 81 269 2.56e-13 67.4
Msa0038010 AT4G35100.1 30.097 206 127 6 1 193 74 275 4.84e-13 66.2
Msa0038010 AT4G35100.2 30.097 206 127 6 1 193 74 275 4.84e-13 66.2
Msa0038010 AT2G16850.1 29.630 189 120 4 1 176 72 260 5.58e-13 66.2
Msa0038010 AT3G53420.1 27.941 204 133 5 1 191 81 283 5.05e-12 63.5
Msa0038010 AT3G53420.2 27.941 204 133 5 1 191 81 283 5.05e-12 63.5
Msa0038010 AT3G47440.1 30.556 180 103 5 20 190 80 246 8.46e-12 62.8
Msa0038010 AT3G54820.1 27.933 179 116 4 1 166 80 258 1.48e-11 62.4
Msa0038010 AT2G37170.1 26.961 204 135 5 1 191 79 281 3.06e-11 61.2
Msa0038010 AT2G37170.2 27.451 204 134 5 1 191 122 324 4.18e-11 61.2
Msa0038010 AT1G01620.2 29.560 159 99 4 21 166 36 194 6.34e-11 59.7
Msa0038010 AT1G01620.1 29.560 159 99 4 21 166 108 266 8.08e-11 60.1

Find 75 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGCATCTCTGGATATATT+TGG 0.216287 1_1:+67251735 Msa0038010:CDS
TTGTATTTGTTGTTCACTAT+TGG 0.275818 1_1:-67250678 None:intergenic
CAATGGAGTAGAAACTCTTA+TGG 0.319532 1_1:+67250698 Msa0038010:exon
CTTGGTGCTCTAGCTGGTTC+TGG 0.336743 1_1:+67251769 Msa0038010:CDS
TTGCTCAACATTCTTATCTC+AGG 0.361959 1_1:+67251292 Msa0038010:CDS
GAACATGTGCCCACGGGAAA+TGG 0.378646 1_1:-67250830 None:intergenic
GGTTAATGTGGATTATCTAA+TGG 0.381324 1_1:+67252045 Msa0038010:three_prime_UTR
ATGAATCCGGTGCGCACCTT+AGG 0.389490 1_1:+67251688 Msa0038010:CDS
GTTTACCATCCTTTCCTCTC+TGG 0.391500 1_1:+67250912 Msa0038010:CDS
TGCAATGCAGGTTGGTGAAT+TGG 0.400837 1_1:+67251243 Msa0038010:intron
ATGTTCATTATTCTATCAAT+TGG 0.408502 1_1:+67250750 Msa0038010:CDS
ATCACTCACCATTGCCTTCG+CGG 0.410120 1_1:+67250800 Msa0038010:CDS
TAAGGTGCGCACCGGATTCA+TGG 0.410875 1_1:-67251686 None:intergenic
CAGGAAATTACAAGCATCTC+TGG 0.418374 1_1:+67251725 Msa0038010:CDS
TAATTTCCTGCTGCAACGGC+TGG 0.421426 1_1:-67251712 None:intergenic
CCGACGCTTGGTGCTCTAGC+TGG 0.422426 1_1:+67251763 Msa0038010:CDS
CGGAGCTGAACCACCTCAAC+CGG 0.432157 1_1:+67251822 Msa0038010:CDS
TGCTGCAACGGCTGGACCTA+AGG 0.434795 1_1:-67251704 None:intergenic
CTCGATTACACTCGATTACA+AGG 0.438875 1_1:-67251960 None:intergenic
CGTTATCACGAAGCTTGATA+AGG 0.443454 1_1:-67251801 None:intergenic
TTCATGGAACCACCGCTTGT+TGG 0.443747 1_1:-67251670 None:intergenic
CTATCAATTGGTCATATCTC+AGG 0.449732 1_1:+67250762 Msa0038010:CDS
GGAGCTTTCGTCGCTAGAGC+TGG 0.454976 1_1:+67251848 Msa0038010:exon
CTTATCAAGCTTCGTGATAA+CGG 0.463299 1_1:+67251802 Msa0038010:CDS
ATGGGAAATGCAGCTTGTGC+TGG 0.464614 1_1:+67250717 Msa0038010:CDS
AATGGAGTAGAAACTCTTAT+GGG 0.469616 1_1:+67250699 Msa0038010:exon
GTTATCACGAAGCTTGATAA+GGG 0.481400 1_1:-67251800 None:intergenic
CTGAACCACCTCAACCGGTT+AGG 0.481691 1_1:+67251827 Msa0038010:CDS
TGTGTCATGAAAGCTTTGTT+TGG 0.490520 1_1:+67252024 Msa0038010:three_prime_UTR
CTTGTAATTTCCTGCTGCAA+CGG 0.491803 1_1:-67251716 None:intergenic
TAGCGACGAAAGCTCCTAAC+CGG 0.492246 1_1:-67251841 None:intergenic
AGCCTAATTAAATAAAATGT+GGG 0.492607 1_1:+67251933 Msa0038010:three_prime_UTR
GCCATGGTTTGTATTATGAA+TGG 0.492916 1_1:+67252078 Msa0038010:three_prime_UTR
CGGCGTTTCGCCATTTCCCG+TGG 0.493217 1_1:+67250820 Msa0038010:CDS
ACTTGTGCTGCAATGTAGGC+TGG 0.494118 1_1:-67250852 None:intergenic
TATTTGGTGGCACCGACGCT+TGG 0.495981 1_1:+67251751 Msa0038010:CDS
TTAGGTCCAGCCGTTGCAGC+AGG 0.497485 1_1:+67251706 Msa0038010:CDS
AAGCGGTGGTTCCATGAATC+CGG 0.497866 1_1:+67251675 Msa0038010:CDS
CGAAAGCTCCTAACCGGTTG+AGG 0.499069 1_1:-67251835 None:intergenic
TACCATCCTTTCCTCTCTGG+TGG 0.500750 1_1:+67250915 Msa0038010:CDS
TGCTCAACATTCTTATCTCA+GGG 0.505305 1_1:+67251293 Msa0038010:CDS
GAATTGGCTGGTATTGCTGT+TGG 0.524769 1_1:+67251259 Msa0038010:CDS
AAAGCTTTGTTTGGTTAATG+TGG 0.526294 1_1:+67252033 Msa0038010:three_prime_UTR
AGAGACTTGTGCTGCAATGT+AGG 0.541162 1_1:-67250856 None:intergenic
GAGCCTAATTAAATAAAATG+TGG 0.546465 1_1:+67251932 Msa0038010:three_prime_UTR
TGCGCTTGTTATGCGCTCAA+AGG 0.549531 1_1:+67250888 Msa0038010:CDS
GGCGTTTCGCCATTTCCCGT+GGG 0.558137 1_1:+67250821 Msa0038010:CDS
TAATAATGTGTTCTGTTGTG+TGG 0.558749 1_1:+67252114 Msa0038010:three_prime_UTR
GAGCTTGAAATATGAGAAGT+GGG 0.558919 1_1:-67251893 None:intergenic
GCGAAACGCCGCGAAGGCAA+TGG 0.561703 1_1:-67250808 None:intergenic
GCTTGTCCAACGCTAACAGT+AGG 0.567496 1_1:-67250948 None:intergenic
CTTGTCCAACGCTAACAGTA+GGG 0.582924 1_1:-67250947 None:intergenic
GCGAAGGCAATGGTGAGTGA+TGG 0.584999 1_1:-67250798 None:intergenic
AGAGCTTGAAATATGAGAAG+TGG 0.588128 1_1:-67251894 None:intergenic
GCATCTCTGGATATATTTGG+TGG 0.589329 1_1:+67251738 Msa0038010:CDS
GAAATGGCGAAACGCCGCGA+AGG 0.592464 1_1:-67250814 None:intergenic
ACCATTCATAATACAAACCA+TGG 0.595763 1_1:-67252079 None:intergenic
ATGCAGGTTGGTGAATTGGC+TGG 0.597369 1_1:+67251247 Msa0038010:intron
ATGAATTGAACGTACCGCAC+GGG 0.604011 1_1:-67251036 None:intergenic
GCTGGACCTAAGGTGCGCAC+CGG 0.614709 1_1:-67251694 None:intergenic
TAGGCTGGAACATGTGCCCA+CGG 0.616186 1_1:-67250837 None:intergenic
ACTGTCCCTACTGTTAGCGT+TGG 0.619097 1_1:+67250942 Msa0038010:CDS
ATAGTGAACAACAAATACAA+TGG 0.626790 1_1:+67250681 Msa0038010:five_prime_UTR
CCAGCTAGAGCACCAAGCGT+CGG 0.629619 1_1:-67251763 None:intergenic
AGGCTGGAACATGTGCCCAC+GGG 0.634760 1_1:-67250836 None:intergenic
CACCACCAGAGAGGAAAGGA+TGG 0.636860 1_1:-67250917 None:intergenic
GCTTGAAATATGAGAAGTGG+GGG 0.639472 1_1:-67251891 None:intergenic
GCCTAATTAAATAAAATGTG+GGG 0.644829 1_1:+67251934 Msa0038010:three_prime_UTR
GTGACACCACCAGAGAGGAA+AGG 0.645575 1_1:-67250921 None:intergenic
AAGCTCCTAACCGGTTGAGG+TGG 0.657778 1_1:-67251832 None:intergenic
AATGCTAGGCCAACAAGCGG+TGG 0.661522 1_1:+67251661 Msa0038010:intron
AGCTTGAAATATGAGAAGTG+GGG 0.669139 1_1:-67251892 None:intergenic
GTAAATGCTAGGCCAACAAG+CGG 0.699062 1_1:+67251658 Msa0038010:intron
GGACAGTGACACCACCAGAG+AGG 0.725765 1_1:-67250926 None:intergenic
TGTTGCTACTGATTCCCGTG+CGG 0.778451 1_1:+67251022 Msa0038010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCAGACAAAATTTATATT+CGG - chr1_1:67251494-67251513 None:intergenic 15.0%
!! ATTCAGACAAAATTTATATT+CGG - chr1_1:67251494-67251513 None:intergenic 15.0%
!! ATGTTCATTATTCTATCAAT+TGG + chr1_1:67250750-67250769 Msa0038010:CDS 20.0%
!!! AAATTTCAAGTTCTCTAAAT+TGG + chr1_1:67251136-67251155 Msa0038010:intron 20.0%
!!! AATTTCAAGTTCTCTAAATT+GGG + chr1_1:67251137-67251156 Msa0038010:intron 20.0%
!!! ATTGAGTTTTTTATGAGTTA+AGG + chr1_1:67251188-67251207 Msa0038010:intron 20.0%
!!! TGATGTTATTGATTTGTATT+TGG + chr1_1:67251338-67251357 Msa0038010:intron 20.0%
!!! TTGTATTTGGTTTTCATAAT+AGG + chr1_1:67251351-67251370 Msa0038010:intron 20.0%
!!! ATTCAATGATAATGTTTCAA+AGG + chr1_1:67251404-67251423 Msa0038010:intron 20.0%
!! AGCCTAATTAAATAAAATGT+GGG + chr1_1:67251933-67251952 Msa0038010:three_prime_UTR 20.0%
!! ATGTTCATTATTCTATCAAT+TGG + chr1_1:67250750-67250769 Msa0038010:CDS 20.0%
!!! AAATTTCAAGTTCTCTAAAT+TGG + chr1_1:67251136-67251155 Msa0038010:intron 20.0%
!!! AATTTCAAGTTCTCTAAATT+GGG + chr1_1:67251137-67251156 Msa0038010:intron 20.0%
!!! ATTGAGTTTTTTATGAGTTA+AGG + chr1_1:67251188-67251207 Msa0038010:intron 20.0%
!!! TGATGTTATTGATTTGTATT+TGG + chr1_1:67251338-67251357 Msa0038010:intron 20.0%
!!! TTGTATTTGGTTTTCATAAT+AGG + chr1_1:67251351-67251370 Msa0038010:intron 20.0%
!!! ATTCAATGATAATGTTTCAA+AGG + chr1_1:67251404-67251423 Msa0038010:intron 20.0%
!! AGCCTAATTAAATAAAATGT+GGG + chr1_1:67251933-67251952 Msa0038010:three_prime_UTR 20.0%
!!! TTGTATTTGTTGTTCACTAT+TGG - chr1_1:67250681-67250700 None:intergenic 25.0%
! ATAGTGAACAACAAATACAA+TGG + chr1_1:67250681-67250700 Msa0038010:five_prime_UTR 25.0%
!!! GTTAAGGTTGTTTTAATTCA+TGG + chr1_1:67251204-67251223 Msa0038010:intron 25.0%
!!! TATTTTTGTATATGCAATGC+AGG + chr1_1:67251231-67251250 Msa0038010:intron 25.0%
! TAACATCAATTCATGAGAAA+AGG - chr1_1:67251326-67251345 None:intergenic 25.0%
! TGTCAAATGTTATATTCAGT+TGG + chr1_1:67251380-67251399 Msa0038010:intron 25.0%
! ATCATGAAAAACTATTCCAA+AGG + chr1_1:67251432-67251451 Msa0038010:intron 25.0%
!! AATTTTGTCTGAATAATGAC+AGG + chr1_1:67251500-67251519 Msa0038010:intron 25.0%
! GAGCCTAATTAAATAAAATG+TGG + chr1_1:67251932-67251951 Msa0038010:three_prime_UTR 25.0%
! GCCTAATTAAATAAAATGTG+GGG + chr1_1:67251934-67251953 Msa0038010:three_prime_UTR 25.0%
!!! TCCCCACATTTTATTTAATT+AGG - chr1_1:67251938-67251957 None:intergenic 25.0%
!!! TTGTATTTGTTGTTCACTAT+TGG - chr1_1:67250681-67250700 None:intergenic 25.0%
! ATAGTGAACAACAAATACAA+TGG + chr1_1:67250681-67250700 Msa0038010:five_prime_UTR 25.0%
!!! GTTAAGGTTGTTTTAATTCA+TGG + chr1_1:67251204-67251223 Msa0038010:intron 25.0%
!!! TATTTTTGTATATGCAATGC+AGG + chr1_1:67251231-67251250 Msa0038010:intron 25.0%
! TAACATCAATTCATGAGAAA+AGG - chr1_1:67251326-67251345 None:intergenic 25.0%
! TGTCAAATGTTATATTCAGT+TGG + chr1_1:67251380-67251399 Msa0038010:intron 25.0%
! ATCATGAAAAACTATTCCAA+AGG + chr1_1:67251432-67251451 Msa0038010:intron 25.0%
!! AATTTTGTCTGAATAATGAC+AGG + chr1_1:67251500-67251519 Msa0038010:intron 25.0%
! GAGCCTAATTAAATAAAATG+TGG + chr1_1:67251932-67251951 Msa0038010:three_prime_UTR 25.0%
! GCCTAATTAAATAAAATGTG+GGG + chr1_1:67251934-67251953 Msa0038010:three_prime_UTR 25.0%
!!! TCCCCACATTTTATTTAATT+AGG - chr1_1:67251938-67251957 None:intergenic 25.0%
AATGGAGTAGAAACTCTTAT+GGG + chr1_1:67250699-67250718 Msa0038010:exon 30.0%
TTAGAGAACTTGAAATTTCG+CGG - chr1_1:67251134-67251153 None:intergenic 30.0%
GTCATGTCATTAAAAACCTT+TGG - chr1_1:67251451-67251470 None:intergenic 30.0%
TAAGATTGTGAGTAATGTTG+TGG + chr1_1:67251633-67251652 Msa0038010:intron 30.0%
!! AAAGCTTTGTTTGGTTAATG+TGG + chr1_1:67252033-67252052 Msa0038010:three_prime_UTR 30.0%
! GGTTAATGTGGATTATCTAA+TGG + chr1_1:67252045-67252064 Msa0038010:three_prime_UTR 30.0%
ACCATTCATAATACAAACCA+TGG - chr1_1:67252082-67252101 None:intergenic 30.0%
TAATAATGTGTTCTGTTGTG+TGG + chr1_1:67252114-67252133 Msa0038010:three_prime_UTR 30.0%
AATAATGTGTTCTGTTGTGT+GGG + chr1_1:67252115-67252134 Msa0038010:three_prime_UTR 30.0%
AATGGAGTAGAAACTCTTAT+GGG + chr1_1:67250699-67250718 Msa0038010:exon 30.0%
TTAGAGAACTTGAAATTTCG+CGG - chr1_1:67251134-67251153 None:intergenic 30.0%
GTCATGTCATTAAAAACCTT+TGG - chr1_1:67251451-67251470 None:intergenic 30.0%
TAAGATTGTGAGTAATGTTG+TGG + chr1_1:67251633-67251652 Msa0038010:intron 30.0%
!! AAAGCTTTGTTTGGTTAATG+TGG + chr1_1:67252033-67252052 Msa0038010:three_prime_UTR 30.0%
! GGTTAATGTGGATTATCTAA+TGG + chr1_1:67252045-67252064 Msa0038010:three_prime_UTR 30.0%
ACCATTCATAATACAAACCA+TGG - chr1_1:67252082-67252101 None:intergenic 30.0%
CAATGGAGTAGAAACTCTTA+TGG + chr1_1:67250698-67250717 Msa0038010:exon 35.0%
CTATCAATTGGTCATATCTC+AGG + chr1_1:67250762-67250781 Msa0038010:CDS 35.0%
TTTGTATATGCAATGCAGGT+TGG + chr1_1:67251235-67251254 Msa0038010:intron 35.0%
TTGCTCAACATTCTTATCTC+AGG + chr1_1:67251292-67251311 Msa0038010:CDS 35.0%
TGCTCAACATTCTTATCTCA+GGG + chr1_1:67251293-67251312 Msa0038010:CDS 35.0%
AACATTCTTATCTCAGGGTA+TGG + chr1_1:67251298-67251317 Msa0038010:intron 35.0%
ATATTCGGAGACTAACTTGA+TGG - chr1_1:67251479-67251498 None:intergenic 35.0%
ATGTTGTGGTTGTAAATGCT+AGG + chr1_1:67251647-67251666 Msa0038010:intron 35.0%
CAAGCATCTCTGGATATATT+TGG + chr1_1:67251735-67251754 Msa0038010:CDS 35.0%
GTTATCACGAAGCTTGATAA+GGG - chr1_1:67251803-67251822 None:intergenic 35.0%
CTTATCAAGCTTCGTGATAA+CGG + chr1_1:67251802-67251821 Msa0038010:CDS 35.0%
AGCTTGAAATATGAGAAGTG+GGG - chr1_1:67251895-67251914 None:intergenic 35.0%
GAGCTTGAAATATGAGAAGT+GGG - chr1_1:67251896-67251915 None:intergenic 35.0%
AGAGCTTGAAATATGAGAAG+TGG - chr1_1:67251897-67251916 None:intergenic 35.0%
!! TGTGTCATGAAAGCTTTGTT+TGG + chr1_1:67252024-67252043 Msa0038010:three_prime_UTR 35.0%
!! TAATGGCAAGATTTTAGCCA+TGG + chr1_1:67252062-67252081 Msa0038010:three_prime_UTR 35.0%
! GCCATGGTTTGTATTATGAA+TGG + chr1_1:67252078-67252097 Msa0038010:three_prime_UTR 35.0%
CAATGGAGTAGAAACTCTTA+TGG + chr1_1:67250698-67250717 Msa0038010:exon 35.0%
CTATCAATTGGTCATATCTC+AGG + chr1_1:67250762-67250781 Msa0038010:CDS 35.0%
TTTGTATATGCAATGCAGGT+TGG + chr1_1:67251235-67251254 Msa0038010:intron 35.0%
TTGCTCAACATTCTTATCTC+AGG + chr1_1:67251292-67251311 Msa0038010:CDS 35.0%
TGCTCAACATTCTTATCTCA+GGG + chr1_1:67251293-67251312 Msa0038010:CDS 35.0%
AACATTCTTATCTCAGGGTA+TGG + chr1_1:67251298-67251317 Msa0038010:intron 35.0%
ATATTCGGAGACTAACTTGA+TGG - chr1_1:67251479-67251498 None:intergenic 35.0%
ATGTTGTGGTTGTAAATGCT+AGG + chr1_1:67251647-67251666 Msa0038010:intron 35.0%
CAAGCATCTCTGGATATATT+TGG + chr1_1:67251735-67251754 Msa0038010:CDS 35.0%
GTTATCACGAAGCTTGATAA+GGG - chr1_1:67251803-67251822 None:intergenic 35.0%
CTTATCAAGCTTCGTGATAA+CGG + chr1_1:67251802-67251821 Msa0038010:CDS 35.0%
AGCTTGAAATATGAGAAGTG+GGG - chr1_1:67251895-67251914 None:intergenic 35.0%
GAGCTTGAAATATGAGAAGT+GGG - chr1_1:67251896-67251915 None:intergenic 35.0%
AGAGCTTGAAATATGAGAAG+TGG - chr1_1:67251897-67251916 None:intergenic 35.0%
!! TGTGTCATGAAAGCTTTGTT+TGG + chr1_1:67252024-67252043 Msa0038010:three_prime_UTR 35.0%
!! TAATGGCAAGATTTTAGCCA+TGG + chr1_1:67252062-67252081 Msa0038010:three_prime_UTR 35.0%
! GCCATGGTTTGTATTATGAA+TGG + chr1_1:67252078-67252097 Msa0038010:three_prime_UTR 35.0%
AATGAATTGAACGTACCGCA+CGG - chr1_1:67251040-67251059 None:intergenic 40.0%
!! TTTCGCGGCAACTTTTTAAG+TGG - chr1_1:67251119-67251138 None:intergenic 40.0%
GTCTGAATAATGACAGGATC+AGG + chr1_1:67251506-67251525 Msa0038010:intron 40.0%
CTTGTAATTTCCTGCTGCAA+CGG - chr1_1:67251719-67251738 None:intergenic 40.0%
CAGGAAATTACAAGCATCTC+TGG + chr1_1:67251725-67251744 Msa0038010:CDS 40.0%
GCATCTCTGGATATATTTGG+TGG + chr1_1:67251738-67251757 Msa0038010:CDS 40.0%
CGTTATCACGAAGCTTGATA+AGG - chr1_1:67251804-67251823 None:intergenic 40.0%
GCTTGAAATATGAGAAGTGG+GGG - chr1_1:67251894-67251913 None:intergenic 40.0%
CTCGATTACACTCGATTACA+AGG - chr1_1:67251963-67251982 None:intergenic 40.0%
AATGAATTGAACGTACCGCA+CGG - chr1_1:67251040-67251059 None:intergenic 40.0%
!! TTTCGCGGCAACTTTTTAAG+TGG - chr1_1:67251119-67251138 None:intergenic 40.0%
GTCTGAATAATGACAGGATC+AGG + chr1_1:67251506-67251525 Msa0038010:intron 40.0%
CTTGTAATTTCCTGCTGCAA+CGG - chr1_1:67251719-67251738 None:intergenic 40.0%
CAGGAAATTACAAGCATCTC+TGG + chr1_1:67251725-67251744 Msa0038010:CDS 40.0%
GCATCTCTGGATATATTTGG+TGG + chr1_1:67251738-67251757 Msa0038010:CDS 40.0%
CGTTATCACGAAGCTTGATA+AGG - chr1_1:67251804-67251823 None:intergenic 40.0%
GCTTGAAATATGAGAAGTGG+GGG - chr1_1:67251894-67251913 None:intergenic 40.0%
CTCGATTACACTCGATTACA+AGG - chr1_1:67251963-67251982 None:intergenic 40.0%
AGAGACTTGTGCTGCAATGT+AGG - chr1_1:67250859-67250878 None:intergenic 45.0%
GTTTACCATCCTTTCCTCTC+TGG + chr1_1:67250912-67250931 Msa0038010:CDS 45.0%
CTTGTCCAACGCTAACAGTA+GGG - chr1_1:67250950-67250969 None:intergenic 45.0%
ATGAATTGAACGTACCGCAC+GGG - chr1_1:67251039-67251058 None:intergenic 45.0%
!! TGCAATGCAGGTTGGTGAAT+TGG + chr1_1:67251243-67251262 Msa0038010:intron 45.0%
GAATTGGCTGGTATTGCTGT+TGG + chr1_1:67251259-67251278 Msa0038010:CDS 45.0%
GTAAATGCTAGGCCAACAAG+CGG + chr1_1:67251658-67251677 Msa0038010:intron 45.0%
AGAGACTTGTGCTGCAATGT+AGG - chr1_1:67250859-67250878 None:intergenic 45.0%
GTTTACCATCCTTTCCTCTC+TGG + chr1_1:67250912-67250931 Msa0038010:CDS 45.0%
CTTGTCCAACGCTAACAGTA+GGG - chr1_1:67250950-67250969 None:intergenic 45.0%
ATGAATTGAACGTACCGCAC+GGG - chr1_1:67251039-67251058 None:intergenic 45.0%
!! TGCAATGCAGGTTGGTGAAT+TGG + chr1_1:67251243-67251262 Msa0038010:intron 45.0%
GAATTGGCTGGTATTGCTGT+TGG + chr1_1:67251259-67251278 Msa0038010:CDS 45.0%
GTAAATGCTAGGCCAACAAG+CGG + chr1_1:67251658-67251677 Msa0038010:intron 45.0%
ATGGGAAATGCAGCTTGTGC+TGG + chr1_1:67250717-67250736 Msa0038010:CDS 50.0%
ATCACTCACCATTGCCTTCG+CGG + chr1_1:67250800-67250819 Msa0038010:CDS 50.0%
ACTTGTGCTGCAATGTAGGC+TGG - chr1_1:67250855-67250874 None:intergenic 50.0%
!! TGCGCTTGTTATGCGCTCAA+AGG + chr1_1:67250888-67250907 Msa0038010:CDS 50.0%
TACCATCCTTTCCTCTCTGG+TGG + chr1_1:67250915-67250934 Msa0038010:CDS 50.0%
ACTGTCCCTACTGTTAGCGT+TGG + chr1_1:67250942-67250961 Msa0038010:CDS 50.0%
GCTTGTCCAACGCTAACAGT+AGG - chr1_1:67250951-67250970 None:intergenic 50.0%
!! TGTTGCTACTGATTCCCGTG+CGG + chr1_1:67251022-67251041 Msa0038010:CDS 50.0%
!! ATGCAGGTTGGTGAATTGGC+TGG + chr1_1:67251247-67251266 Msa0038010:intron 50.0%
TTCATGGAACCACCGCTTGT+TGG - chr1_1:67251673-67251692 None:intergenic 50.0%
AAGCGGTGGTTCCATGAATC+CGG + chr1_1:67251675-67251694 Msa0038010:CDS 50.0%
TAATTTCCTGCTGCAACGGC+TGG - chr1_1:67251715-67251734 None:intergenic 50.0%
TAGCGACGAAAGCTCCTAAC+CGG - chr1_1:67251844-67251863 None:intergenic 50.0%
ATGGGAAATGCAGCTTGTGC+TGG + chr1_1:67250717-67250736 Msa0038010:CDS 50.0%
ATCACTCACCATTGCCTTCG+CGG + chr1_1:67250800-67250819 Msa0038010:CDS 50.0%
ACTTGTGCTGCAATGTAGGC+TGG - chr1_1:67250855-67250874 None:intergenic 50.0%
!! TGCGCTTGTTATGCGCTCAA+AGG + chr1_1:67250888-67250907 Msa0038010:CDS 50.0%
TACCATCCTTTCCTCTCTGG+TGG + chr1_1:67250915-67250934 Msa0038010:CDS 50.0%
ACTGTCCCTACTGTTAGCGT+TGG + chr1_1:67250942-67250961 Msa0038010:CDS 50.0%
GCTTGTCCAACGCTAACAGT+AGG - chr1_1:67250951-67250970 None:intergenic 50.0%
!! TGTTGCTACTGATTCCCGTG+CGG + chr1_1:67251022-67251041 Msa0038010:CDS 50.0%
!! ATGCAGGTTGGTGAATTGGC+TGG + chr1_1:67251247-67251266 Msa0038010:intron 50.0%
TTCATGGAACCACCGCTTGT+TGG - chr1_1:67251673-67251692 None:intergenic 50.0%
AAGCGGTGGTTCCATGAATC+CGG + chr1_1:67251675-67251694 Msa0038010:CDS 50.0%
TAATTTCCTGCTGCAACGGC+TGG - chr1_1:67251715-67251734 None:intergenic 50.0%
TAGCGACGAAAGCTCCTAAC+CGG - chr1_1:67251844-67251863 None:intergenic 50.0%
GCGAAGGCAATGGTGAGTGA+TGG - chr1_1:67250801-67250820 None:intergenic 55.0%
GAACATGTGCCCACGGGAAA+TGG - chr1_1:67250833-67250852 None:intergenic 55.0%
TAGGCTGGAACATGTGCCCA+CGG - chr1_1:67250840-67250859 None:intergenic 55.0%
CACCACCAGAGAGGAAAGGA+TGG - chr1_1:67250920-67250939 None:intergenic 55.0%
GTGACACCACCAGAGAGGAA+AGG - chr1_1:67250924-67250943 None:intergenic 55.0%
AATGCTAGGCCAACAAGCGG+TGG + chr1_1:67251661-67251680 Msa0038010:intron 55.0%
TAAGGTGCGCACCGGATTCA+TGG - chr1_1:67251689-67251708 None:intergenic 55.0%
ATGAATCCGGTGCGCACCTT+AGG + chr1_1:67251688-67251707 Msa0038010:CDS 55.0%
!! TATTTGGTGGCACCGACGCT+TGG + chr1_1:67251751-67251770 Msa0038010:CDS 55.0%
!! CTTGGTGCTCTAGCTGGTTC+TGG + chr1_1:67251769-67251788 Msa0038010:CDS 55.0%
CTGAACCACCTCAACCGGTT+AGG + chr1_1:67251827-67251846 Msa0038010:CDS 55.0%
AAGCTCCTAACCGGTTGAGG+TGG - chr1_1:67251835-67251854 None:intergenic 55.0%
CGAAAGCTCCTAACCGGTTG+AGG - chr1_1:67251838-67251857 None:intergenic 55.0%
GCGAAGGCAATGGTGAGTGA+TGG - chr1_1:67250801-67250820 None:intergenic 55.0%
GAACATGTGCCCACGGGAAA+TGG - chr1_1:67250833-67250852 None:intergenic 55.0%
TAGGCTGGAACATGTGCCCA+CGG - chr1_1:67250840-67250859 None:intergenic 55.0%
CACCACCAGAGAGGAAAGGA+TGG - chr1_1:67250920-67250939 None:intergenic 55.0%
GTGACACCACCAGAGAGGAA+AGG - chr1_1:67250924-67250943 None:intergenic 55.0%
AATGCTAGGCCAACAAGCGG+TGG + chr1_1:67251661-67251680 Msa0038010:intron 55.0%
TAAGGTGCGCACCGGATTCA+TGG - chr1_1:67251689-67251708 None:intergenic 55.0%
ATGAATCCGGTGCGCACCTT+AGG + chr1_1:67251688-67251707 Msa0038010:CDS 55.0%
!! TATTTGGTGGCACCGACGCT+TGG + chr1_1:67251751-67251770 Msa0038010:CDS 55.0%
!! CTTGGTGCTCTAGCTGGTTC+TGG + chr1_1:67251769-67251788 Msa0038010:CDS 55.0%
CTGAACCACCTCAACCGGTT+AGG + chr1_1:67251827-67251846 Msa0038010:CDS 55.0%
AAGCTCCTAACCGGTTGAGG+TGG - chr1_1:67251835-67251854 None:intergenic 55.0%
CGAAAGCTCCTAACCGGTTG+AGG - chr1_1:67251838-67251857 None:intergenic 55.0%
GAAATGGCGAAACGCCGCGA+AGG - chr1_1:67250817-67250836 None:intergenic 60.0%
GGCGTTTCGCCATTTCCCGT+GGG + chr1_1:67250821-67250840 Msa0038010:CDS 60.0%
AGGCTGGAACATGTGCCCAC+GGG - chr1_1:67250839-67250858 None:intergenic 60.0%
GGACAGTGACACCACCAGAG+AGG - chr1_1:67250929-67250948 None:intergenic 60.0%
TGCTGCAACGGCTGGACCTA+AGG - chr1_1:67251707-67251726 None:intergenic 60.0%
TTAGGTCCAGCCGTTGCAGC+AGG + chr1_1:67251706-67251725 Msa0038010:CDS 60.0%
! CCAGCTAGAGCACCAAGCGT+CGG - chr1_1:67251766-67251785 None:intergenic 60.0%
CGGAGCTGAACCACCTCAAC+CGG + chr1_1:67251822-67251841 Msa0038010:CDS 60.0%
GGAGCTTTCGTCGCTAGAGC+TGG + chr1_1:67251848-67251867 Msa0038010:exon 60.0%
!! AAGTGGGGGTGTCGAGAGCA+GGG - chr1_1:67251880-67251899 None:intergenic 60.0%
GAAATGGCGAAACGCCGCGA+AGG - chr1_1:67250817-67250836 None:intergenic 60.0%
GGCGTTTCGCCATTTCCCGT+GGG + chr1_1:67250821-67250840 Msa0038010:CDS 60.0%
AGGCTGGAACATGTGCCCAC+GGG - chr1_1:67250839-67250858 None:intergenic 60.0%
GGACAGTGACACCACCAGAG+AGG - chr1_1:67250929-67250948 None:intergenic 60.0%
TGCTGCAACGGCTGGACCTA+AGG - chr1_1:67251707-67251726 None:intergenic 60.0%
TTAGGTCCAGCCGTTGCAGC+AGG + chr1_1:67251706-67251725 Msa0038010:CDS 60.0%
! CCAGCTAGAGCACCAAGCGT+CGG - chr1_1:67251766-67251785 None:intergenic 60.0%
CGGAGCTGAACCACCTCAAC+CGG + chr1_1:67251822-67251841 Msa0038010:CDS 60.0%
GGAGCTTTCGTCGCTAGAGC+TGG + chr1_1:67251848-67251867 Msa0038010:exon 60.0%
!! AAGTGGGGGTGTCGAGAGCA+GGG - chr1_1:67251880-67251899 None:intergenic 60.0%
GCGAAACGCCGCGAAGGCAA+TGG - chr1_1:67250811-67250830 None:intergenic 65.0%
CGGCGTTTCGCCATTTCCCG+TGG + chr1_1:67250820-67250839 Msa0038010:CDS 65.0%
GCTGGACCTAAGGTGCGCAC+CGG - chr1_1:67251697-67251716 None:intergenic 65.0%
!! CCGACGCTTGGTGCTCTAGC+TGG + chr1_1:67251763-67251782 Msa0038010:CDS 65.0%
!! GAAGTGGGGGTGTCGAGAGC+AGG - chr1_1:67251881-67251900 None:intergenic 65.0%
GCGAAACGCCGCGAAGGCAA+TGG - chr1_1:67250811-67250830 None:intergenic 65.0%
CGGCGTTTCGCCATTTCCCG+TGG + chr1_1:67250820-67250839 Msa0038010:CDS 65.0%
GCTGGACCTAAGGTGCGCAC+CGG - chr1_1:67251697-67251716 None:intergenic 65.0%
!! CCGACGCTTGGTGCTCTAGC+TGG + chr1_1:67251763-67251782 Msa0038010:CDS 65.0%
!! GAAGTGGGGGTGTCGAGAGC+AGG - chr1_1:67251881-67251900 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 67250672 67252136 67250672 ID=Msa0038010;Name=Msa0038010
chr1_1 mRNA 67250672 67252136 67250672 ID=Msa0038010-mRNA-1;Parent=Msa0038010;Name=Msa0038010-mRNA-1;_AED=0.05;_eAED=0.05;_QI=45|1|1|1|1|1|3|272|194
chr1_1 exon 67250672 67251043 67250672 ID=Msa0038010-mRNA-1:exon:21801;Parent=Msa0038010-mRNA-1
chr1_1 exon 67251253 67251314 67251253 ID=Msa0038010-mRNA-1:exon:21802;Parent=Msa0038010-mRNA-1
chr1_1 exon 67251669 67252136 67251669 ID=Msa0038010-mRNA-1:exon:21803;Parent=Msa0038010-mRNA-1
chr1_1 five_prime_UTR 67250672 67250716 67250672 ID=Msa0038010-mRNA-1:five_prime_utr;Parent=Msa0038010-mRNA-1
chr1_1 CDS 67250717 67251043 67250717 ID=Msa0038010-mRNA-1:cds;Parent=Msa0038010-mRNA-1
chr1_1 CDS 67251253 67251314 67251253 ID=Msa0038010-mRNA-1:cds;Parent=Msa0038010-mRNA-1
chr1_1 CDS 67251669 67251864 67251669 ID=Msa0038010-mRNA-1:cds;Parent=Msa0038010-mRNA-1
chr1_1 three_prime_UTR 67251865 67252136 67251865 ID=Msa0038010-mRNA-1:three_prime_utr;Parent=Msa0038010-mRNA-1
Gene Sequence

>Msa0038010

ATGGGAAATGCAGCTTGTGCTGGACTAACAGTCATGTTCATTATTCTATCAATTGGTCATATCTCAGGTGCACATCTCAATCCATCACTCACCATTGCCTTCGCGGCGTTTCGCCATTTCCCGTGGGCACATGTTCCAGCCTACATTGCAGCACAAGTCTCTGCTTCGATTTGCGCTTGTTATGCGCTCAAAGGAGTTTACCATCCTTTCCTCTCTGGTGGTGTCACTGTCCCTACTGTTAGCGTTGGACAAGCTTTTGCAACTGAGTTTATCATCACTTTTATTCTCTTGTTTGTTGTTACTGCTGTTGCTACTGATTCCCGTGCGGTTGGTGAATTGGCTGGTATTGCTGTTGGTGCTACAGTTTTGCTCAACATTCTTATCTCAGGGCCAACAAGCGGTGGTTCCATGAATCCGGTGCGCACCTTAGGTCCAGCCGTTGCAGCAGGAAATTACAAGCATCTCTGGATATATTTGGTGGCACCGACGCTTGGTGCTCTAGCTGGTTCTGGAGTTTATACCCTTATCAAGCTTCGTGATAACGGAGCTGAACCACCTCAACCGGTTAGGAGCTTTCGTCGCTAG

Protein sequence

>Msa0038010

MGNAACAGLTVMFIILSIGHISGAHLNPSLTIAFAAFRHFPWAHVPAYIAAQVSASICACYALKGVYHPFLSGGVTVPTVSVGQAFATEFIITFILLFVVTAVATDSRAVGELAGIAVGATVLLNILISGPTSGGSMNPVRTLGPAVAAGNYKHLWIYLVAPTLGALAGSGVYTLIKLRDNGAEPPQPVRSFRR*