AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0168200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168200 MtrunA17_Chr1g0184151 95.614 342 15 0 1 342 1 342 0.0 687
Msa0168200 MtrunA17_Chr1g0184161 78.655 342 73 0 1 342 1 342 0.0 583
Msa0168200 MtrunA17_Chr1g0184121 64.307 339 119 2 1 338 1 338 7.30e-173 483
Msa0168200 MtrunA17_Chr1g0184101 65.015 343 118 2 1 342 1 342 1.02e-169 475
Msa0168200 MtrunA17_Chr1g0184111 64.307 339 119 2 1 338 1 338 1.25e-169 475
Msa0168200 MtrunA17_Chr6g0455481 43.658 339 185 4 1 336 4 339 2.64e-102 304
Msa0168200 MtrunA17_Chr7g0220011 42.857 336 187 3 1 334 1 333 1.33e-99 297
Msa0168200 MtrunA17_Chr7g0220001 41.768 328 186 3 1 326 3 327 2.43e-93 281
Msa0168200 MtrunA17_Chr8g0345831 39.939 328 194 3 1 326 4 330 1.34e-83 256
Msa0168200 MtrunA17_Chr3g0128001 38.138 333 198 5 10 338 8 336 1.35e-79 246
Msa0168200 MtrunA17_Chr5g0412651 37.537 341 204 6 5 338 6 344 2.39e-73 230
Msa0168200 MtrunA17_Chr5g0412671 36.890 328 201 4 17 338 17 344 1.48e-72 228
Msa0168200 MtrunA17_Chr7g0250511 35.577 312 195 6 12 319 22 331 9.05e-68 216
Msa0168200 MtrunA17_Chr5g0412681 36.964 303 181 4 26 324 21 317 4.28e-67 214
Msa0168200 MtrunA17_Chr1g0184141 70.312 128 38 0 77 204 1 128 8.62e-65 201
Msa0168200 MtrunA17_Chr1g0179801 36.228 334 192 6 1 321 27 352 5.72e-64 207
Msa0168200 MtrunA17_Chr7g0242551 36.111 324 191 7 10 319 21 342 3.09e-63 205
Msa0168200 MtrunA17_Chr7g0265221 34.337 332 189 5 12 321 35 359 5.25e-61 200
Msa0168200 MtrunA17_Chr4g0006371 34.718 337 187 9 10 319 20 350 1.57e-60 198
Msa0168200 MtrunA17_Chr7g0225881 34.795 342 202 8 10 337 34 368 4.98e-59 194
Msa0168200 MtrunA17_Chr1g0162351 33.841 328 191 6 15 319 47 371 1.91e-56 188
Msa0168200 MtrunA17_Chr1g0162321 33.537 328 192 6 15 319 47 371 3.49e-56 187
Msa0168200 MtrunA17_Chr6g0472861 34.402 343 205 8 10 337 34 371 2.04e-55 185
Msa0168200 MtrunA17_Chr1g0162361 34.018 341 205 5 15 338 4 341 3.61e-54 181
Msa0168200 MtrunA17_Chr7g0239821 32.602 319 202 7 15 326 40 352 6.14e-54 181
Msa0168200 MtrunA17_Chr5g0437181 33.439 314 198 7 15 319 25 336 1.40e-53 180
Msa0168200 MtrunA17_Chr4g0050031 35.294 289 176 4 38 319 62 346 1.50e-52 177
Msa0168200 MtrunA17_Chr7g0239121 33.025 324 195 10 15 326 27 340 2.52e-52 176
Msa0168200 MtrunA17_Chr3g0113641 33.333 315 197 8 15 319 26 337 2.77e-52 176
Msa0168200 MtrunA17_Chr7g0239111 34.062 320 196 9 15 326 31 343 3.78e-52 176
Msa0168200 MtrunA17_Chr5g0426891 32.492 317 202 6 10 319 11 322 4.36e-52 175
Msa0168200 MtrunA17_Chr4g0045411 34.472 322 188 9 18 321 11 327 8.34e-52 175
Msa0168200 MtrunA17_Chr3g0109041 32.934 334 203 9 10 329 16 342 1.14e-51 174
Msa0168200 MtrunA17_Chr7g0239101 33.962 318 193 8 11 319 27 336 5.06e-51 173
Msa0168200 MtrunA17_Chr8g0336781 36.964 303 178 9 34 328 91 388 5.77e-51 174
Msa0168200 MtrunA17_Chr8g0336751 34.364 291 179 7 38 321 94 379 2.30e-50 172
Msa0168200 MtrunA17_Chr2g0296371 32.110 327 204 9 8 323 21 340 1.39e-49 169
Msa0168200 MtrunA17_Chr5g0405411 32.759 290 179 6 19 298 20 303 4.19e-49 168
Msa0168200 MtrunA17_Chr4g0045441 32.063 315 194 5 24 319 13 326 4.57e-49 167
Msa0168200 MtrunA17_Chr8g0348081 33.441 311 196 7 35 338 57 363 8.05e-49 167
Msa0168200 MtrunA17_Chr8g0336861 33.555 301 190 5 35 328 57 354 1.92e-48 166
Msa0168200 MtrunA17_Chr3g0126741 33.223 301 182 7 29 319 50 341 2.55e-48 166
Msa0168200 MtrunA17_Chr8g0375571 30.240 334 225 5 15 342 22 353 2.65e-48 166
Msa0168200 MtrunA17_Chr2g0311831 33.657 309 191 8 38 338 68 370 8.80e-48 165
Msa0168200 MtrunA17_Chr8g0375671 30.818 318 212 5 15 326 29 344 1.51e-47 164
Msa0168200 MtrunA17_Chr8g0371931 31.615 291 183 6 18 298 19 303 2.30e-47 164
Msa0168200 MtrunA17_Chr2g0311921 33.546 313 189 8 38 339 54 358 3.07e-47 163
Msa0168200 MtrunA17_Chr4g0045431 33.939 330 187 11 24 330 13 334 3.81e-47 162
Msa0168200 MtrunA17_Chr2g0311741 34.237 295 184 6 37 326 26 315 4.37e-47 162
Msa0168200 MtrunA17_Chr8g0336761 33.758 314 190 9 26 328 46 352 6.12e-47 162
Msa0168200 MtrunA17_Chr5g0398291 28.783 337 221 9 10 331 14 346 1.06e-46 162
Msa0168200 MtrunA17_Chr2g0311761 34.516 310 188 9 38 338 68 371 1.46e-46 162
Msa0168200 MtrunA17_Chr8g0336851 32.797 311 198 6 35 338 57 363 1.67e-46 161
Msa0168200 MtrunA17_Chr8g0354241 34.295 312 188 7 37 337 67 372 2.11e-46 161
Msa0168200 MtrunA17_Chr1g0184241 32.895 304 194 5 10 309 40 337 2.20e-46 161
Msa0168200 MtrunA17_Chr3g0102041 30.539 334 210 8 25 341 26 354 2.98e-46 160
Msa0168200 MtrunA17_Chr8g0354261 33.974 312 189 7 37 337 67 372 3.53e-46 161
Msa0168200 MtrunA17_Chr3g0114861 30.530 321 215 3 10 326 12 328 4.32e-46 159
Msa0168200 MtrunA17_Chr8g0371921 29.446 343 216 8 18 341 19 354 4.89e-46 160
Msa0168200 MtrunA17_Chr5g0424201 29.352 293 200 3 38 326 44 333 7.28e-46 159
Msa0168200 MtrunA17_Chr8g0336631 32.523 329 196 9 26 338 46 364 1.00e-45 159
Msa0168200 MtrunA17_Chr4g0045471 32.840 338 192 11 12 322 1 330 1.43e-45 159
Msa0168200 MtrunA17_Chr1g0187821 32.899 307 196 5 37 337 66 368 3.14e-45 158
Msa0168200 MtrunA17_Chr5g0424211 32.509 283 174 6 37 309 41 316 1.09e-44 156
Msa0168200 MtrunA17_Chr4g0045451 32.615 325 185 11 24 322 13 329 1.17e-44 156
Msa0168200 MtrunA17_Chr2g0311861 34.091 308 171 8 38 338 64 346 1.23e-44 156
Msa0168200 MtrunA17_Chr8g0364471 30.645 310 202 5 37 337 66 371 4.54e-44 155
Msa0168200 MtrunA17_Chr8g0375701 29.968 317 212 8 15 326 31 342 6.50e-44 154
Msa0168200 MtrunA17_Chr7g0239071 34.766 256 160 5 68 319 29 281 8.70e-44 153
Msa0168200 MtrunA17_Chr2g0311701 32.107 299 187 6 37 324 68 361 1.17e-43 154
Msa0168200 MtrunA17_Chr3g0121141 31.973 294 184 6 36 323 2 285 1.20e-43 152
Msa0168200 MtrunA17_Chr2g0311711 32.131 305 178 8 37 325 66 357 1.38e-43 154
Msa0168200 MtrunA17_Chr7g0235951 31.731 312 198 7 37 338 66 372 1.62e-43 154
Msa0168200 MtrunA17_Chr1g0187811 30.994 342 217 8 12 338 155 492 1.62e-43 156
Msa0168200 MtrunA17_Chr8g0365241 30.395 329 202 9 12 326 31 346 2.57e-43 153
Msa0168200 MtrunA17_Chr1g0167911 31.269 323 211 6 10 326 26 343 3.39e-43 152
Msa0168200 MtrunA17_Chr3g0093741 31.231 333 202 8 11 329 25 344 3.41e-43 152
Msa0168200 MtrunA17_Chr8g0375601 30.240 334 213 9 15 337 22 346 3.54e-43 153
Msa0168200 MtrunA17_Chr3g0125201 32.333 300 179 9 37 323 2 290 4.87e-43 150
Msa0168200 MtrunA17_Chr3g0093751 31.231 333 202 8 11 329 25 344 4.98e-43 152
Msa0168200 MtrunA17_Chr4g0066121 30.921 304 198 6 26 320 46 346 5.31e-43 152
Msa0168200 MtrunA17_Chr2g0311681 33.010 309 172 8 37 327 62 353 5.85e-43 152
Msa0168200 MtrunA17_Chr2g0314401 30.699 329 208 9 12 329 25 344 1.28e-42 151
Msa0168200 MtrunA17_Chr3g0093761 30.699 329 208 8 11 329 25 343 1.56e-42 150
Msa0168200 MtrunA17_Chr4g0068891 30.945 307 193 8 38 334 20 317 3.51e-42 149
Msa0168200 MtrunA17_Chr1g0161041 32.229 332 201 9 10 329 66 385 3.99e-42 150
Msa0168200 MtrunA17_Chr1g0162191 32.646 291 180 7 38 319 47 330 4.63e-42 149
Msa0168200 MtrunA17_Chr2g0311691 33.010 309 172 9 37 327 62 353 4.96e-42 150
Msa0168200 MtrunA17_Chr1g0187831 30.844 308 202 5 37 337 69 372 7.11e-42 150
Msa0168200 MtrunA17_Chr5g0423201 30.068 296 194 8 38 326 47 336 8.74e-42 149
Msa0168200 MtrunA17_Chr2g0314381 28.308 325 219 6 10 326 49 367 1.13e-41 149
Msa0168200 MtrunA17_Chr5g0423221 30.061 326 213 8 12 329 45 363 1.95e-41 148
Msa0168200 MtrunA17_Chr4g0055591 29.293 297 195 6 37 326 60 348 2.55e-41 147
Msa0168200 MtrunA17_Chr2g0289341 31.650 297 183 9 37 324 3 288 8.12e-41 145
Msa0168200 MtrunA17_Chr5g0421011 29.102 323 215 7 11 326 20 335 8.29e-41 146
Msa0168200 MtrunA17_Chr5g0420981 29.766 299 191 7 38 326 53 342 1.26e-40 145
Msa0168200 MtrunA17_Chr5g0420951 29.667 300 196 6 35 326 50 342 1.37e-40 145
Msa0168200 MtrunA17_Chr1g0161111 31.940 335 214 8 10 337 102 429 1.41e-40 147
Msa0168200 MtrunA17_Chr2g0332191 28.399 331 213 8 10 326 23 343 1.62e-40 145
Msa0168200 MtrunA17_Chr2g0311631 29.518 332 204 7 10 324 28 346 1.90e-40 145
Msa0168200 MtrunA17_Chr5g0439011 30.797 276 176 5 37 306 4 270 2.58e-40 144
Msa0168200 MtrunA17_Chr7g0266651 29.179 329 220 7 10 330 30 353 6.93e-40 144
Msa0168200 MtrunA17_Chr5g0420941 27.515 338 229 7 12 341 19 348 1.10e-39 143
Msa0168200 MtrunA17_Chr1g0167951 31.935 310 187 11 10 307 26 323 1.32e-39 143
Msa0168200 MtrunA17_Chr1g0184131 44.375 160 47 1 225 342 1 160 2.21e-39 137
Msa0168200 MtrunA17_Chr4g0064781 30.159 315 197 7 38 342 50 351 2.61e-39 142
Msa0168200 MtrunA17_Chr7g0239091 31.447 318 195 10 15 325 136 437 2.70e-39 144
Msa0168200 MtrunA17_Chr1g0167961 31.353 303 188 8 35 326 66 359 4.79e-39 142
Msa0168200 MtrunA17_Chr5g0420901 29.595 321 210 7 12 324 20 332 4.88e-39 141
Msa0168200 MtrunA17_Chr5g0423251 29.688 320 209 9 15 326 24 335 4.93e-39 141
Msa0168200 MtrunA17_Chr5g0421041 30.581 327 203 11 11 326 20 333 5.76e-39 141
Msa0168200 MtrunA17_Chr7g0232161 33.904 292 170 11 15 297 36 313 6.00e-39 140
Msa0168200 MtrunA17_Chr5g0423191 28.972 321 210 9 15 326 24 335 8.30e-39 140
Msa0168200 MtrunA17_Chr8g0370711 30.169 295 197 6 38 327 52 342 8.74e-39 140
Msa0168200 MtrunA17_Chr1g0161081 31.193 327 211 8 10 329 43 362 1.01e-38 141
Msa0168200 MtrunA17_Chr1g0191201 28.698 338 218 7 15 337 33 362 1.03e-38 141
Msa0168200 MtrunA17_Chr5g0421091 27.500 320 219 6 12 324 19 332 1.38e-38 140
Msa0168200 MtrunA17_Chr2g0314391 28.395 324 216 8 12 326 44 360 1.75e-38 140
Msa0168200 MtrunA17_Chr3g0087031 28.571 336 212 9 13 333 33 355 2.03e-38 140
Msa0168200 MtrunA17_Chr7g0265351 31.561 301 187 8 37 329 38 327 9.79e-38 137
Msa0168200 MtrunA17_Chr3g0145171 29.333 300 194 8 38 326 52 344 1.16e-37 138
Msa0168200 MtrunA17_Chr2g0319491 30.584 291 181 8 38 322 33 308 2.04e-37 136
Msa0168200 MtrunA17_Chr1g0167931 28.704 324 180 6 10 326 26 305 3.41e-37 135
Msa0168200 MtrunA17_Chr7g0236011 30.696 316 196 6 37 338 66 372 9.00e-37 136
Msa0168200 MtrunA17_Chr3g0145181 29.316 307 194 8 32 323 40 338 1.12e-36 135
Msa0168200 MtrunA17_Chr8g0351101 29.221 308 203 7 12 308 30 333 2.59e-36 134
Msa0168200 MtrunA17_Chr1g0194321 29.375 320 185 9 38 330 20 325 2.59e-36 134
Msa0168200 MtrunA17_Chr1g0204181 28.931 318 205 8 15 320 38 346 2.67e-36 134
Msa0168200 MtrunA17_Chr8g0375681 29.348 276 188 5 70 341 15 287 3.86e-36 132
Msa0168200 MtrunA17_Chr3g0125421 29.191 346 208 9 14 337 15 345 4.56e-36 134
Msa0168200 MtrunA17_Chr3g0092531 30.000 290 187 5 38 319 6 287 4.97e-36 132
Msa0168200 MtrunA17_Chr8g0335411 30.872 298 191 7 37 324 66 358 5.73e-36 134
Msa0168200 MtrunA17_Chr5g0421101 28.571 329 207 11 12 326 21 335 5.90e-36 133
Msa0168200 MtrunA17_Chr3g0114871 29.889 271 173 7 1 260 1 265 1.07e-35 130
Msa0168200 MtrunA17_Chr5g0423211 29.358 327 207 11 12 325 21 336 3.29e-35 131
Msa0168200 MtrunA17_Chr4g0011311 31.197 234 153 6 37 266 66 295 4.05e-35 130
Msa0168200 MtrunA17_Chr8g0370721 28.105 306 211 7 38 338 52 353 6.99e-35 130
Msa0168200 MtrunA17_Chr7g0235981 30.325 277 181 4 72 341 58 329 1.18e-34 129
Msa0168200 MtrunA17_Chr4g0045461 29.032 310 200 6 35 325 23 331 3.01e-34 129
Msa0168200 MtrunA17_Chr8g0358941 29.305 331 194 11 34 342 23 335 4.10e-34 128
Msa0168200 MtrunA17_Chr3g0145201 29.630 270 175 5 55 315 704 967 8.83e-34 132
Msa0168200 MtrunA17_Chr4g0066991 30.547 311 183 7 37 338 66 352 1.53e-33 127
Msa0168200 MtrunA17_Chr7g0247991 30.449 312 202 7 37 338 66 372 2.21e-33 127
Msa0168200 MtrunA17_Chr2g0313111 29.032 310 189 10 34 329 24 316 3.00e-33 125
Msa0168200 MtrunA17_Chr2g0285931 25.610 328 205 8 18 325 11 319 3.20e-33 125
Msa0168200 MtrunA17_Chr6g0474391 29.245 318 204 9 15 320 43 351 1.04e-31 122
Msa0168200 MtrunA17_Chr5g0394071 37.576 165 96 2 156 319 5 163 9.34e-31 115
Msa0168200 MtrunA17_Chr3g0130391 26.911 327 218 7 6 320 36 353 1.19e-30 119
Msa0168200 MtrunA17_Chr8g0362741 32.301 226 133 7 37 260 66 273 1.65e-30 117
Msa0168200 MtrunA17_Chr7g0219991 39.103 156 89 3 1 153 1 153 1.23e-29 116
Msa0168200 MtrunA17_Chr7g0219991 46.364 110 58 1 150 258 245 354 3.25e-27 109
Msa0168200 MtrunA17_Chr1g0148771 26.621 293 185 7 38 319 63 336 1.27e-29 116
Msa0168200 MtrunA17_Chr5g0420721 30.159 189 124 4 143 326 52 237 4.50e-29 112
Msa0168200 MtrunA17_Chr4g0004061 26.557 305 205 8 38 331 9 305 7.03e-29 113
Msa0168200 MtrunA17_Chr8g0389941 30.721 319 192 10 31 326 26 338 1.70e-28 113
Msa0168200 MtrunA17_Chr1g0170641 35.862 145 88 4 11 153 20 161 3.47e-28 107
Msa0168200 MtrunA17_Chr1g0170631 37.209 172 100 5 153 319 3 171 3.93e-28 108
Msa0168200 MtrunA17_Chr7g0233661 40.385 156 81 2 178 332 1 145 5.54e-28 107
Msa0168200 MtrunA17_Chr4g0004071 24.837 306 214 5 35 331 6 304 1.02e-27 110
Msa0168200 MtrunA17_Chr8g0384461 25.228 329 215 9 15 327 26 339 3.08e-27 110
Msa0168200 MtrunA17_Chr6g0486831 29.969 327 196 10 40 342 23 340 4.37e-27 109
Msa0168200 MtrunA17_Chr2g0293931 33.854 192 114 5 156 334 10 201 8.95e-27 105
Msa0168200 MtrunA17_Chr2g0314371 27.333 300 178 9 12 280 26 316 3.45e-25 103
Msa0168200 MtrunA17_Chr3g0126761 32.353 170 111 2 153 319 44 212 4.48e-25 101
Msa0168200 MtrunA17_Chr4g0052251 25.874 286 183 7 58 324 43 318 4.99e-25 103
Msa0168200 MtrunA17_Chr8g0384481 24.841 314 223 6 15 319 38 347 6.27e-25 103
Msa0168200 MtrunA17_Chr8g0336801 33.766 154 99 1 188 338 2 155 6.48e-25 98.6
Msa0168200 MtrunA17_Chr6g0488511 27.134 328 186 13 37 342 2 298 2.00e-24 101
Msa0168200 MtrunA17_Chr4g0075471 37.398 123 76 1 184 305 16 138 7.21e-24 96.3
Msa0168200 MtrunA17_Chr7g0247741 27.083 288 198 6 38 319 11 292 1.11e-23 99.4
Msa0168200 MtrunA17_Chr8g0348951 26.552 290 198 7 38 319 10 292 2.03e-23 98.6
Msa0168200 MtrunA17_Chr5g0420881 34.884 129 83 1 197 324 1 129 2.66e-23 94.4
Msa0168200 MtrunA17_Chr4g0055911 28.349 321 204 10 37 339 8 320 1.08e-22 96.7
Msa0168200 MtrunA17_Chr4g0037611 38.760 129 77 2 165 291 3 131 1.47e-22 93.2
Msa0168200 MtrunA17_Chr8g0336831 33.511 188 116 6 35 217 57 240 1.49e-22 95.1
Msa0168200 MtrunA17_Chr3g0105281 26.316 304 190 9 29 322 25 304 2.60e-22 95.9
Msa0168200 MtrunA17_Chr4g0053251 26.552 290 188 8 36 302 6 293 6.09e-22 94.7
Msa0168200 MtrunA17_Chr8g0336871 32.738 168 103 3 166 329 3 164 1.17e-21 90.5
Msa0168200 MtrunA17_Chr1g0158011 26.939 245 155 7 93 318 1 240 5.97e-20 87.8
Msa0168200 MtrunA17_Chr3g0138351 22.903 310 220 9 38 333 7 311 8.13e-20 88.6
Msa0168200 MtrunA17_Chr4g0009561 23.920 301 212 9 36 323 5 301 1.10e-19 88.2
Msa0168200 MtrunA17_Chr8g0364171 34.454 119 76 2 153 269 18 136 3.16e-19 82.8
Msa0168200 MtrunA17_Chr2g0319521 34.545 110 71 1 152 260 15 124 3.39e-19 82.8
Msa0168200 MtrunA17_Chr7g0256741 30.000 180 111 5 142 313 115 287 6.38e-19 86.3
Msa0168200 MtrunA17_Chr4g0064771 34.940 166 103 3 154 315 27 191 1.84e-18 82.8
Msa0168200 MtrunA17_Chr3g0092581 29.193 161 108 3 163 319 1 159 1.86e-18 82.0
Msa0168200 MtrunA17_Chr4g0009541 24.490 294 200 10 40 323 17 298 2.41e-18 84.3
Msa0168200 MtrunA17_Chr4g0055871 25.753 299 202 7 38 324 9 299 2.83e-18 84.3
Msa0168200 MtrunA17_Chr1g0167921 37.864 103 63 1 158 259 54 156 1.55e-16 76.6
Msa0168200 MtrunA17_Chr5g0407731 24.013 304 208 11 34 329 29 317 3.44e-16 78.6
Msa0168200 MtrunA17_Chr8g0375581 48.485 66 33 1 191 255 19 84 1.42e-15 71.2
Msa0168200 MtrunA17_Chr2g0311611 40.845 71 35 1 197 260 1 71 6.51e-13 63.2
Msa0168200 MtrunA17_Chr1g0158021 24.675 231 140 7 38 252 49 261 8.82e-13 67.4
Msa0168200 MtrunA17_Chr1g0161101 38.824 85 43 1 194 278 403 478 2.09e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0168200 AT5G24530.1 39.939 328 188 5 15 337 15 338 1.06e-78 244
Msa0168200 AT4G10490.1 36.950 341 210 4 4 340 7 346 2.21e-78 244
Msa0168200 AT4G10500.1 34.503 342 220 4 1 339 6 346 3.51e-74 233
Msa0168200 AT5G05600.1 37.037 324 183 9 10 319 33 349 6.65e-62 202
Msa0168200 AT2G44800.1 34.524 336 209 7 10 336 22 355 5.79e-61 199
Msa0168200 AT2G36690.2 35.762 302 185 5 15 308 32 332 1.13e-60 199
Msa0168200 AT2G36690.1 35.762 302 185 5 15 308 32 332 1.13e-60 199
Msa0168200 AT3G11180.1 35.938 320 192 7 10 319 62 378 9.43e-60 197
Msa0168200 AT3G11180.2 35.938 320 192 7 10 319 62 378 1.01e-59 197
Msa0168200 AT3G60290.1 35.691 311 193 6 14 319 26 334 3.92e-59 194
Msa0168200 AT5G07480.1 31.661 319 203 6 11 319 20 333 8.24e-59 194
Msa0168200 AT5G08640.2 33.333 294 189 3 37 326 42 332 2.08e-57 189
Msa0168200 AT5G08640.1 33.333 294 189 3 37 326 42 332 2.08e-57 189
Msa0168200 AT1G55290.1 34.049 326 203 5 10 329 32 351 4.12e-56 187
Msa0168200 AT3G55970.1 34.535 333 192 10 10 327 20 341 3.31e-54 182
Msa0168200 AT2G38240.1 32.012 328 195 8 10 321 18 333 1.38e-53 180
Msa0168200 AT3G21420.1 36.877 301 174 8 36 325 53 348 2.00e-53 180
Msa0168200 AT1G06620.1 34.969 326 197 9 10 326 33 352 2.31e-53 180
Msa0168200 AT5G59530.1 32.738 336 215 8 10 337 30 362 7.19e-51 173
Msa0168200 AT3G13610.1 30.462 325 215 5 10 329 33 351 9.56e-50 170
Msa0168200 AT5G63590.1 32.414 290 188 4 35 319 11 297 1.29e-49 168
Msa0168200 AT1G06645.1 33.546 313 187 9 37 338 76 378 2.82e-49 169
Msa0168200 AT3G19000.1 34.545 330 182 9 17 319 6 328 8.25e-49 167
Msa0168200 AT3G19010.1 34.062 320 188 9 19 319 8 323 3.04e-48 166
Msa0168200 AT3G19010.4 34.062 320 188 9 19 319 8 323 3.04e-48 166
Msa0168200 AT4G16330.2 33.557 298 182 8 35 326 64 351 6.28e-47 163
Msa0168200 AT2G30830.1 33.333 297 185 7 38 326 54 345 1.31e-46 162
Msa0168200 AT1G06650.2 34.106 302 182 9 37 328 63 357 1.78e-46 162
Msa0168200 AT5G59540.1 31.773 299 194 6 38 329 61 356 6.21e-46 160
Msa0168200 AT3G51240.1 30.208 288 189 6 19 298 19 302 7.33e-46 160
Msa0168200 AT5G12270.1 31.250 336 217 8 11 338 29 358 1.01e-45 159
Msa0168200 AT5G43440.1 33.639 327 186 11 10 320 30 341 1.15e-45 159
Msa0168200 AT1G03410.2 33.739 329 194 11 10 325 26 343 3.39e-45 158
Msa0168200 AT1G77330.1 31.561 301 185 7 37 326 2 292 6.18e-45 156
Msa0168200 AT1G04350.1 32.353 340 211 12 10 338 28 359 6.79e-45 157
Msa0168200 AT2G30840.1 32.484 314 190 9 38 338 57 361 7.89e-45 157
Msa0168200 AT1G03410.1 33.739 329 194 11 10 325 63 380 9.18e-45 158
Msa0168200 AT3G61400.1 30.612 343 215 8 10 335 31 367 1.13e-44 157
Msa0168200 AT5G63600.1 29.097 299 199 5 38 332 33 322 1.41e-44 155
Msa0168200 AT3G12900.1 32.407 324 210 7 10 329 28 346 1.49e-44 156
Msa0168200 AT1G06640.1 33.876 307 176 11 37 328 63 357 1.95e-44 156
Msa0168200 AT5G05600.2 36.981 265 146 9 10 260 33 290 2.86e-44 154
Msa0168200 AT4G25300.1 31.457 302 198 7 34 329 48 346 3.87e-44 155
Msa0168200 AT1G17020.1 30.065 306 206 6 38 337 53 356 4.36e-44 155
Msa0168200 AT1G06620.2 37.109 256 149 8 10 259 33 282 5.30e-44 153
Msa0168200 AT5G63600.2 29.000 300 199 6 38 332 33 323 1.03e-43 153
Msa0168200 AT1G04380.1 32.492 317 202 9 15 326 23 332 1.86e-43 153
Msa0168200 AT4G22880.1 27.628 333 221 8 10 326 13 341 2.10e-43 153
Msa0168200 AT4G22880.2 27.628 333 221 8 10 326 13 341 2.10e-43 153
Msa0168200 AT4G22880.3 27.628 333 221 8 10 326 13 341 2.10e-43 153
Msa0168200 AT1G03400.1 30.769 299 192 7 37 330 55 343 3.65e-43 152
Msa0168200 AT5G43450.1 33.663 303 181 10 25 320 49 338 8.29e-43 152
Msa0168200 AT1G78550.1 30.000 300 198 8 34 326 49 343 4.23e-42 150
Msa0168200 AT2G25450.1 32.450 302 179 8 38 327 55 343 4.38e-42 150
Msa0168200 AT4G21200.1 33.564 289 153 7 31 297 26 297 6.49e-42 149
Msa0168200 AT3G55970.2 35.338 266 154 9 10 260 20 282 1.15e-41 147
Msa0168200 AT2G30840.3 32.166 314 185 10 38 338 57 355 1.74e-41 148
Msa0168200 AT1G17010.1 30.333 300 194 7 36 326 52 345 4.93e-41 147
Msa0168200 AT4G25310.1 30.769 286 185 6 55 334 70 348 8.28e-41 146
Msa0168200 AT1G05010.1 31.636 275 170 7 37 303 3 267 1.03e-40 145
Msa0168200 AT4G16330.1 36.946 203 120 4 127 326 48 245 2.29e-40 142
Msa0168200 AT3G19010.3 31.661 319 167 9 19 319 8 293 3.25e-40 144
Msa0168200 AT1G15550.1 27.778 306 191 7 37 326 56 347 9.77e-40 144
Msa0168200 AT1G12010.1 30.794 315 191 9 38 342 7 304 2.71e-39 142
Msa0168200 AT1G62380.1 32.353 272 171 6 39 305 8 271 3.11e-39 141
Msa0168200 AT5G51810.1 29.755 326 201 9 15 327 42 352 5.39e-39 142
Msa0168200 AT5G63595.1 29.348 276 171 5 22 296 10 262 8.77e-39 139
Msa0168200 AT5G20400.1 32.012 328 198 12 15 327 19 336 9.20e-39 141
Msa0168200 AT5G07200.1 27.811 338 204 8 13 327 35 355 1.38e-38 141
Msa0168200 AT1G49390.1 30.154 325 213 9 13 326 17 338 1.47e-38 140
Msa0168200 AT1G80330.1 27.299 348 203 10 2 319 6 333 1.62e-38 140
Msa0168200 AT1G03400.2 28.135 327 192 8 37 330 55 371 4.34e-38 140
Msa0168200 AT5G43440.2 33.588 262 153 7 10 259 30 282 1.60e-37 136
Msa0168200 AT5G07480.2 32.000 225 143 4 103 319 2 224 1.83e-37 135
Msa0168200 AT3G19000.2 33.333 279 152 9 17 268 6 277 3.51e-37 135
Msa0168200 AT5G63580.2 31.602 231 149 4 34 260 15 240 6.59e-37 133
Msa0168200 AT5G63580.1 31.878 229 147 4 34 258 15 238 1.91e-36 132
Msa0168200 AT1G60980.1 29.747 316 193 8 14 309 35 341 2.94e-36 135
Msa0168200 AT5G20550.1 31.173 324 204 12 15 324 19 337 3.39e-36 134
Msa0168200 AT1G30040.1 27.129 317 198 8 30 329 23 323 3.51e-36 134
Msa0168200 AT5G54000.2 29.102 323 211 10 15 323 19 337 1.02e-35 133
Msa0168200 AT1G78550.2 28.947 266 178 7 67 326 5 265 1.06e-34 128
Msa0168200 AT1G06650.1 33.906 233 136 6 37 260 63 286 1.64e-34 129
Msa0168200 AT4G25420.1 28.529 333 200 10 15 327 40 354 1.89e-34 130
Msa0168200 AT5G59540.2 31.466 232 142 6 38 260 61 284 2.93e-34 127
Msa0168200 AT2G34555.1 27.922 308 190 8 38 329 27 318 3.14e-34 129
Msa0168200 AT1G78440.1 28.012 332 197 10 30 338 8 320 5.02e-34 128
Msa0168200 AT2G30840.2 34.361 227 140 5 38 259 57 279 7.75e-34 127
Msa0168200 AT1G06640.2 34.188 234 132 7 37 259 63 285 1.32e-33 126
Msa0168200 AT1G06640.3 33.913 230 130 7 37 255 63 281 2.78e-33 125
Msa0168200 AT1G80340.1 24.051 316 225 5 11 319 23 330 2.88e-33 126
Msa0168200 AT5G43935.1 28.125 288 185 8 34 319 15 282 6.73e-33 124
Msa0168200 AT5G43450.2 32.636 239 149 7 25 259 49 279 7.81e-33 124
Msa0168200 AT4G21690.1 26.087 345 217 13 2 326 16 342 8.72e-33 125
Msa0168200 AT3G19010.2 32.171 258 160 5 19 261 8 265 1.16e-32 123
Msa0168200 AT1G04380.2 32.400 250 160 7 15 262 23 265 1.53e-32 122
Msa0168200 AT3G51240.2 30.137 219 143 5 86 298 4 218 7.08e-32 120
Msa0168200 AT3G61400.2 30.682 264 164 7 10 260 31 288 1.14e-31 120
Msa0168200 AT1G02400.1 29.000 300 183 10 37 319 23 309 4.78e-31 120
Msa0168200 AT5G54000.1 29.615 260 173 7 71 323 1 257 1.79e-30 117
Msa0168200 AT1G49390.2 28.736 261 179 6 71 326 1 259 2.54e-30 116
Msa0168200 AT1G47990.1 28.239 301 172 9 32 309 9 288 2.72e-30 117
Msa0168200 AT5G51810.2 30.153 262 160 9 15 263 42 293 3.99e-29 114
Msa0168200 AT1G44090.1 27.303 304 198 7 38 327 63 357 9.12e-29 115
Msa0168200 AT4G25310.2 27.915 283 169 7 55 334 70 320 1.54e-27 110
Msa0168200 AT2G19590.1 28.616 318 192 11 38 342 11 306 1.61e-27 110
Msa0168200 AT1G50960.1 26.861 309 186 8 38 332 40 322 2.04e-27 110
Msa0168200 AT4G25300.2 32.086 187 122 3 152 334 72 257 3.69e-26 105
Msa0168200 AT1G30040.2 27.126 247 148 7 30 260 23 253 7.71e-25 102
Msa0168200 AT4G25420.2 28.736 261 153 9 15 255 40 287 2.62e-24 101
Msa0168200 AT1G52800.1 24.839 310 221 6 35 337 7 311 3.21e-23 98.6
Msa0168200 AT4G03070.1 26.899 316 185 14 35 325 11 305 1.12e-22 97.1
Msa0168200 AT1G52820.1 24.542 273 200 4 58 328 36 304 3.22e-22 95.9
Msa0168200 AT3G50210.4 24.765 319 211 8 37 326 7 325 5.04e-22 95.5
Msa0168200 AT3G50210.1 24.765 319 211 8 37 326 7 325 5.04e-22 95.5
Msa0168200 AT3G50210.3 24.765 319 211 8 37 326 7 325 5.04e-22 95.5
Msa0168200 AT1G02400.2 30.041 243 137 10 39 263 25 252 5.23e-22 94.0
Msa0168200 AT2G19590.2 30.097 206 127 6 146 342 94 291 8.52e-22 94.4
Msa0168200 AT1G14130.1 28.425 292 178 10 38 317 9 281 5.72e-21 92.0
Msa0168200 AT3G49620.1 26.316 304 184 9 34 306 30 324 8.17e-21 92.4
Msa0168200 AT4G23340.1 27.500 320 210 8 35 341 7 317 1.59e-20 91.3
Msa0168200 AT3G49630.1 24.918 305 187 10 34 306 5 299 1.63e-20 91.3
Msa0168200 AT3G46500.5 26.168 321 208 11 36 338 15 324 2.50e-19 87.8
Msa0168200 AT1G14120.2 28.169 284 181 10 38 313 8 276 3.98e-19 87.0
Msa0168200 AT1G14120.1 28.169 284 181 10 38 313 8 276 3.98e-19 87.0
Msa0168200 AT1G14120.3 28.169 284 181 10 38 313 8 276 3.98e-19 87.0
Msa0168200 AT3G49630.3 24.042 287 186 8 42 306 19 295 6.92e-19 86.7
Msa0168200 AT3G46490.1 26.888 331 191 13 30 322 9 326 9.29e-19 86.3
Msa0168200 AT3G47190.1 24.556 338 185 14 21 322 7 310 9.19e-18 83.2
Msa0168200 AT3G46500.10 29.208 202 130 6 146 338 53 250 4.42e-16 77.4
Msa0168200 AT3G46500.1 29.208 202 130 6 146 338 53 250 4.42e-16 77.4
Msa0168200 AT3G46500.4 30.688 189 118 6 159 338 4 188 5.76e-16 75.5
Msa0168200 AT1G28030.1 24.667 300 198 11 37 319 12 300 1.57e-15 76.6
Msa0168200 AT3G46490.2 26.644 289 169 11 30 288 9 284 3.84e-15 75.5
Msa0168200 AT5G58660.1 23.659 317 187 12 38 322 34 327 1.15e-14 74.7
Msa0168200 AT2G06960.1 30.882 136 80 3 191 326 24 145 1.23e-14 70.9
Msa0168200 AT3G50210.2 27.083 192 130 5 145 326 52 243 2.37e-14 72.4
Msa0168200 AT4G23340.2 30.986 142 93 2 205 341 58 199 2.04e-13 68.9
Msa0168200 AT3G49630.2 27.059 170 111 4 145 306 62 226 2.38e-13 69.7
Msa0168200 AT4G22870.1 30.526 95 65 1 229 322 2 96 1.40e-11 61.2
Msa0168200 AT1G52820.2 23.902 205 150 4 58 260 36 236 7.17e-11 62.4

Find 92 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGGAGTTTGGATTCTTTC+AGG 0.143451 1_4:-50531367 Msa0168200:intron
TGGAGCAGTGGCAACATTTA+TGG 0.183909 1_4:-50531042 Msa0168200:CDS
TCAAACGAAGTTAAGGAATT+AGG 0.190756 1_4:-50530743 Msa0168200:CDS
AGTCTTTACAAACATGTTAT+AGG 0.218853 1_4:-50529291 Msa0168200:three_prime_UTR
TCCCACTACTTTAACAAATA+TGG 0.221392 1_4:-50529471 Msa0168200:CDS
ACATTCCCTGGTCTTGATTC+TGG 0.234355 1_4:+50531486 None:intergenic
TTTGAGGCAACAAAGAATTA+AGG 0.259486 1_4:-50529423 Msa0168200:exon
CTGTATCTAGTTGGATATTC+AGG 0.262999 1_4:+50531019 None:intergenic
TGCTCATTGTTTCCTTCATT+TGG 0.280240 1_4:+50531221 None:intergenic
TACATCATCTTGCATTAAAA+TGG 0.280338 1_4:+50530556 None:intergenic
TATAAATGAAAATAACAAAT+TGG 0.290338 1_4:+50529343 None:intergenic
CCCAATGCCAAACTTGGTTC+AGG 0.327111 1_4:+50530611 None:intergenic
ATCAAAGCTGCTGAGGAGTT+TGG 0.334819 1_4:-50531378 Msa0168200:CDS
CTGAAATCCTTGTATTTGTA+AGG 0.340393 1_4:+50529495 None:intergenic
TAGACATCCATGTTATCCTT+TGG 0.361309 1_4:-50531062 Msa0168200:CDS
GTAGCCTACATTTATGATAA+AGG 0.365779 1_4:+50530475 None:intergenic
ACGATGCCCTGAACCAAGTT+TGG 0.372935 1_4:-50530618 Msa0168200:CDS
CTCATTCCCAATGCCAAACT+TGG 0.375463 1_4:+50530605 None:intergenic
TCAAGGCTCATGAATTTGAT+TGG 0.380400 1_4:-50530719 Msa0168200:CDS
TTGAAACAGGTTATTAATCA+TGG 0.383573 1_4:-50531256 Msa0168200:intron
CAAGGCTCATGAATTTGATT+GGG 0.392990 1_4:-50530718 Msa0168200:CDS
TATTAATCATGGGATTTCAA+TGG 0.396172 1_4:-50531245 Msa0168200:CDS
ATTAAAATGGTGATGAGGTT+TGG 0.413356 1_4:+50530569 None:intergenic
CCCTGAACCAAGTTTGGCAT+TGG 0.420955 1_4:-50530612 Msa0168200:CDS
TTTATTTACCTGTATCTAGT+TGG 0.422552 1_4:+50531010 None:intergenic
CAACTGAAAAGGTTCATCTA+TGG 0.423903 1_4:-50531096 Msa0168200:CDS
GCAAGTCAAGGTCGCACAAC+TGG 0.430750 1_4:-50529603 Msa0168200:CDS
TTAATGCAAGATGATGTATC+TGG 0.436398 1_4:-50530551 Msa0168200:CDS
AAATGATTAGTTGATTTGTC+AGG 0.443772 1_4:-50529240 None:intergenic
CTGAATATCCAACTAGATAC+AGG 0.450209 1_4:-50531018 Msa0168200:intron
GGATTTCTCAAACGAAGTTA+AGG 0.453289 1_4:-50530750 Msa0168200:CDS
CTGGGATGCTATTACTGAAT+GGG 0.458561 1_4:+50531457 None:intergenic
TTTCTAACAGAGAGCGTGTA+GGG 0.464772 1_4:-50530772 Msa0168200:intron
TTTCAACTATGCAACTGAAA+AGG 0.468616 1_4:-50531107 Msa0168200:CDS
TGATCTAAGTGAAGCATGTA+AGG 0.468628 1_4:-50531430 Msa0168200:CDS
TTGTAAGGTTTGCACATTGG+TGG 0.470197 1_4:+50529510 None:intergenic
TGTAGTGCTTAAATCATTTG+AGG 0.472728 1_4:-50529439 Msa0168200:CDS
GAAGGGCTTGGTTTGAAGTG+TGG 0.474946 1_4:-50530695 Msa0168200:CDS
CCTGAACCAAGTTTGGCATT+GGG 0.475824 1_4:-50530611 Msa0168200:CDS
TTTAAAATATTAAGATCAAA+AGG 0.478775 1_4:-50531670 Msa0168200:five_prime_UTR
AACATCTTGCATGGCTTGGA+AGG 0.479041 1_4:+50531139 None:intergenic
GGTGGAAATATATAGTTCTC+AGG 0.487712 1_4:+50531507 None:intergenic
TGAAACAGGTTATTAATCAT+GGG 0.491425 1_4:-50531255 Msa0168200:intron
CCAATGCCAAACTTGGTTCA+GGG 0.492968 1_4:+50530612 None:intergenic
TGGAACATGGATTGCTCTTG+AGG 0.496534 1_4:-50530510 Msa0168200:CDS
AGTAAACATCTTGCATGGCT+TGG 0.496588 1_4:+50531135 None:intergenic
CTCATGAATTTGATTGGGGA+AGG 0.498627 1_4:-50530713 Msa0168200:CDS
AATTTGATTGGGGAAGGGCT+TGG 0.498769 1_4:-50530707 Msa0168200:CDS
CACCATATTTGTTAAAGTAG+TGG 0.501105 1_4:+50529469 None:intergenic
TATGCCTTTATCATAAATGT+AGG 0.504151 1_4:-50530479 Msa0168200:CDS
ACCATATTTGTTAAAGTAGT+GGG 0.504566 1_4:+50529470 None:intergenic
AATTTCATTGTGTGAAGCAA+TGG 0.508243 1_4:-50531571 Msa0168200:exon
ACTGGGATGCTATTACTGAA+TGG 0.509509 1_4:+50531456 None:intergenic
GGTCTTCAAGTATTGAAAGA+TGG 0.520194 1_4:-50530530 Msa0168200:CDS
CATGTTATCCTTTGGAGCAG+TGG 0.527284 1_4:-50531054 Msa0168200:CDS
ACATTTATGATAAAGGCATA+AGG 0.533864 1_4:+50530482 None:intergenic
GATTTCAATGGACCAAATGA+AGG 0.541597 1_4:-50531233 Msa0168200:CDS
AAATGTAGGCTACCAGCTGC+AGG 0.541823 1_4:-50530465 Msa0168200:intron
GAAAGATTGTGCTGGCTCTA+CGG 0.543787 1_4:+50529548 None:intergenic
TTCCCTGGTCTTGATTCTGG+TGG 0.544568 1_4:+50531489 None:intergenic
AAATGTTGCCACTGCTCCAA+AGG 0.548787 1_4:+50531046 None:intergenic
CACTGCTCCAAAGGATAACA+TGG 0.553237 1_4:+50531055 None:intergenic
TTAATAAGCGTACCTGCAGC+TGG 0.554374 1_4:+50530453 None:intergenic
AGAAACTTATTACAAATCGT+TGG 0.556643 1_4:-50531548 Msa0168200:CDS
GCTTCACTTAGATCAATCAC+TGG 0.558675 1_4:+50531438 None:intergenic
TCATGAATTTGATTGGGGAA+GGG 0.561604 1_4:-50530712 Msa0168200:CDS
GCATACCCATGTGGTTCGCA+TGG 0.562957 1_4:+50531693 None:intergenic
TATTTGTAAGGTTTGCACAT+TGG 0.565708 1_4:+50529507 None:intergenic
TGCAATTATCTGAAGGAGCT+AGG 0.567527 1_4:+50529571 None:intergenic
TTTCCACCAGAATCAAGACC+AGG 0.567736 1_4:-50531492 Msa0168200:CDS
ATAGTACTTTAAATACATAG+AGG 0.568371 1_4:+50529318 None:intergenic
CTTGCATTAAAATGGTGATG+AGG 0.571455 1_4:+50530564 None:intergenic
AAGTATTGAAAGATGGAACA+TGG 0.586993 1_4:-50530523 Msa0168200:CDS
AAATTATGTTAACACTTGCA+AGG 0.589831 1_4:+50529396 None:intergenic
CTGCTAGTAAACATCTTGCA+TGG 0.595833 1_4:+50531130 None:intergenic
GTGCAAACCTTACAAATACA+AGG 0.599046 1_4:-50529502 Msa0168200:CDS
GAAAATTATCAAAGCTGCTG+AGG 0.602177 1_4:-50531385 Msa0168200:CDS
TGCCTACAGATAATCAGTAA+TGG 0.604490 1_4:-50529663 Msa0168200:intron
AAGGCTCATGAATTTGATTG+GGG 0.613524 1_4:-50530717 Msa0168200:CDS
TCTACGGTGCAATTATCTGA+AGG 0.616001 1_4:+50529564 None:intergenic
TCATCGATGAAAGATTGTGC+TGG 0.617469 1_4:+50529540 None:intergenic
CTTCACTTAGATCAATCACT+GGG 0.619527 1_4:+50531439 None:intergenic
AAGTTAAGGAATTAGGCTCA+AGG 0.623969 1_4:-50530736 Msa0168200:CDS
ACATCTTGCATGGCTTGGAA+GGG 0.624864 1_4:+50531140 None:intergenic
AAATGATTTAAGCACTACAT+CGG 0.640331 1_4:+50529443 None:intergenic
GATCTAAGTGAAGCATGTAA+GGG 0.647799 1_4:-50531429 Msa0168200:CDS
GTTGTGACTAATGCAAGTCA+AGG 0.651839 1_4:-50529615 Msa0168200:CDS
ACTATGCCATGCGAACCACA+TGG 0.654101 1_4:-50531699 Msa0168200:five_prime_UTR
TTCTAACAGAGAGCGTGTAG+GGG 0.656072 1_4:-50530771 Msa0168200:intron
TTCCACCAGAATCAAGACCA+GGG 0.677870 1_4:-50531491 Msa0168200:CDS
CTATGCCATGCGAACCACAT+GGG 0.683935 1_4:-50531698 Msa0168200:five_prime_UTR
AAACTTGGTTCAGGGCATCG+TGG 0.693357 1_4:+50530620 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAATATTAAGATCAAA+AGG - chr1_4:50529286-50529305 Msa0168200:three_prime_UTR 10.0%
!! ATTAAAAACAAGAAAATAAA+TGG + chr1_4:50529630-50529649 None:intergenic 10.0%
!!! TATAAAATTCTAATTTGTTT+TGG + chr1_4:50530795-50530814 None:intergenic 10.0%
!! TATAAATGAAAATAACAAAT+TGG + chr1_4:50531616-50531635 None:intergenic 10.0%
!! AGTCCTAATTAATTATTTAA+CGG - chr1_4:50529675-50529694 Msa0168200:intron 15.0%
!!! ACAAAATCAAATTTTAAAGT+TGG - chr1_4:50530025-50530044 Msa0168200:intron 15.0%
!! TATGAAAATAGTTTATAAAC+GGG + chr1_4:50530055-50530074 None:intergenic 15.0%
!! GTATGAAAATAGTTTATAAA+CGG + chr1_4:50530056-50530075 None:intergenic 15.0%
!! CAAAAATTGATATATTTAGA+AGG + chr1_4:50530099-50530118 None:intergenic 15.0%
!!! TATATTTGATCATTTTGAAA+AGG + chr1_4:50530871-50530890 None:intergenic 15.0%
!! AAAATTGGAAATTATAGTAA+GGG + chr1_4:50530930-50530949 None:intergenic 15.0%
!! TAAAATTGGAAATTATAGTA+AGG + chr1_4:50530931-50530950 None:intergenic 15.0%
!!! TTTTCACATAATATAAAAGA+TGG + chr1_4:50530973-50530992 None:intergenic 15.0%
!! GTCCTAATTAATTATTTAAC+GGG - chr1_4:50529676-50529695 Msa0168200:intron 20.0%
!! ATCCCGTTAAATAATTAATT+AGG + chr1_4:50529681-50529700 None:intergenic 20.0%
!!! ACTAAAAACAATATTTTACG+AGG + chr1_4:50530130-50530149 None:intergenic 20.0%
!! GTCTAACAAAAAATTTAGAA+GGG + chr1_4:50530649-50530668 None:intergenic 20.0%
!! AGTCTAACAAAAAATTTAGA+AGG + chr1_4:50530650-50530669 None:intergenic 20.0%
!!! AAAATTCTAATTTGTTTTGG+AGG + chr1_4:50530792-50530811 None:intergenic 20.0%
!!! TTCCAATTTTATTTTTTGAG+AGG - chr1_4:50530940-50530959 Msa0168200:intron 20.0%
!! ATCCTCTCAAAAAATAAAAT+TGG + chr1_4:50530945-50530964 None:intergenic 20.0%
!! ACTCAACTTTATCTTAAAAT+AGG + chr1_4:50531066-50531085 None:intergenic 20.0%
!!! CTTATGACAGTTTTTTTTAA+GGG + chr1_4:50531178-50531197 None:intergenic 20.0%
!!! ACTTATGACAGTTTTTTTTA+AGG + chr1_4:50531179-50531198 None:intergenic 20.0%
!! AGTAATTGGAATCAATTATA+AGG + chr1_4:50531222-50531241 None:intergenic 20.0%
!!! TGTTAAATTTTATTGACTTG+TGG - chr1_4:50531267-50531286 Msa0168200:intron 20.0%
!! ATAGTACTTTAAATACATAG+AGG + chr1_4:50531641-50531660 None:intergenic 20.0%
!! TTCACACAATGAAATTTTGA+AGG + chr1_4:50529381-50529400 None:intergenic 25.0%
! AGAAACTTATTACAAATCGT+TGG - chr1_4:50529408-50529427 Msa0168200:exon 25.0%
! TTGAAACAGGTTATTAATCA+TGG - chr1_4:50529700-50529719 Msa0168200:intron 25.0%
! TGAAACAGGTTATTAATCAT+GGG - chr1_4:50529701-50529720 Msa0168200:intron 25.0%
! TATTAATCATGGGATTTCAA+TGG - chr1_4:50529711-50529730 Msa0168200:intron 25.0%
! TTTATTTACCTGTATCTAGT+TGG + chr1_4:50529949-50529968 None:intergenic 25.0%
!!! TATTTTGACAATGATCTTAC+TGG - chr1_4:50530285-50530304 Msa0168200:intron 25.0%
! TACATCATCTTGCATTAAAA+TGG + chr1_4:50530403-50530422 None:intergenic 25.0%
!! ACATTTATGATAAAGGCATA+AGG + chr1_4:50530477-50530496 None:intergenic 25.0%
! TATGCCTTTATCATAAATGT+AGG - chr1_4:50530477-50530496 Msa0168200:CDS 25.0%
! TTAAAAAGAGTCGTTGATAT+TGG - chr1_4:50530597-50530616 Msa0168200:CDS 25.0%
! GTTAGGACTAAAAATAATGA+TGG + chr1_4:50530692-50530711 None:intergenic 25.0%
! CATGAGTTAACTAAAAAGTT+AGG + chr1_4:50530709-50530728 None:intergenic 25.0%
! TATTAATTAGATACGTCCTT+CGG - chr1_4:50531039-50531058 Msa0168200:CDS 25.0%
!! AGTTCAGATACATAAACTTT+TGG + chr1_4:50531091-50531110 None:intergenic 25.0%
! ACCAACTTTCTCTTATAAAT+AGG - chr1_4:50531118-50531137 Msa0168200:CDS 25.0%
! TCCTATTTATAAGAGAAAGT+TGG + chr1_4:50531122-50531141 None:intergenic 25.0%
!! ACTGTCATAAGTTTCTATTT+TGG - chr1_4:50531187-50531206 Msa0168200:CDS 25.0%
!! ACCATATTTGTTAAAGTAGT+GGG + chr1_4:50531489-50531508 None:intergenic 25.0%
! AAATGATTTAAGCACTACAT+CGG + chr1_4:50531516-50531535 None:intergenic 25.0%
! AAATTATGTTAACACTTGCA+AGG + chr1_4:50531563-50531582 None:intergenic 25.0%
! AGTCTTTACAAACATGTTAT+AGG - chr1_4:50531665-50531684 Msa0168200:five_prime_UTR 25.0%
!!! TATTTTAAAGCATACCCATG+TGG + chr1_4:50529275-50529294 None:intergenic 30.0%
! GAATGAAAGGTTTTTGTTGA+GGG + chr1_4:50529354-50529373 None:intergenic 30.0%
! AGAATGAAAGGTTTTTGTTG+AGG + chr1_4:50529355-50529374 None:intergenic 30.0%
!! TTTTGAAGGTGAAGAATGAA+AGG + chr1_4:50529367-50529386 None:intergenic 30.0%
AATTTCATTGTGTGAAGCAA+TGG - chr1_4:50529385-50529404 Msa0168200:three_prime_UTR 30.0%
TTATTTAACGGGATTGAAAC+AGG - chr1_4:50529687-50529706 Msa0168200:intron 30.0%
! GGAAACAATGAGCATTTTTA+AGG - chr1_4:50529744-50529763 Msa0168200:intron 30.0%
!!! AAGTTTTTTCTGTACTCATC+AGG + chr1_4:50529784-50529803 None:intergenic 30.0%
TTTCAACTATGCAACTGAAA+AGG - chr1_4:50529849-50529868 Msa0168200:intron 30.0%
! GGCAGAAAAGTACATATATA+AGG + chr1_4:50530078-50530097 None:intergenic 30.0%
TCAAACGAAGTTAAGGAATT+AGG - chr1_4:50530213-50530232 Msa0168200:intron 30.0%
! ATTAAAATGGTGATGAGGTT+TGG + chr1_4:50530390-50530409 None:intergenic 30.0%
TTAATGCAAGATGATGTATC+TGG - chr1_4:50530405-50530424 Msa0168200:intron 30.0%
!! AAGTATTGAAAGATGGAACA+TGG - chr1_4:50530433-50530452 Msa0168200:intron 30.0%
GTAGCCTACATTTATGATAA+AGG + chr1_4:50530484-50530503 None:intergenic 30.0%
CTAAATTTGTCCCTAAATGT+AGG - chr1_4:50530904-50530923 Msa0168200:intron 30.0%
!! TTGAGAAAGTATTATTGACC+TGG + chr1_4:50531017-50531036 None:intergenic 30.0%
TTATCTTAAAATAGGACCGA+AGG + chr1_4:50531058-50531077 None:intergenic 30.0%
!!! TTTTTTTAAGGGATGACTTG+TGG + chr1_4:50531167-50531186 None:intergenic 30.0%
!! GTCATAAGTTTCTATTTTGG+TGG - chr1_4:50531190-50531209 Msa0168200:CDS 30.0%
TAGAGCAATTCAGAAGTAAT+TGG + chr1_4:50531236-50531255 None:intergenic 30.0%
! TACCATTACTGATTATCTGT+AGG + chr1_4:50531298-50531317 None:intergenic 30.0%
TATTTGTAAGGTTTGCACAT+TGG + chr1_4:50531452-50531471 None:intergenic 30.0%
CTGAAATCCTTGTATTTGTA+AGG + chr1_4:50531464-50531483 None:intergenic 30.0%
TCCCACTACTTTAACAAATA+TGG - chr1_4:50531485-50531504 Msa0168200:CDS 30.0%
! CACCATATTTGTTAAAGTAG+TGG + chr1_4:50531490-50531509 None:intergenic 30.0%
TGTAGTGCTTAAATCATTTG+AGG - chr1_4:50531517-50531536 Msa0168200:CDS 30.0%
! TTTGAGGCAACAAAGAATTA+AGG - chr1_4:50531533-50531552 Msa0168200:CDS 30.0%
GGTGGAAATATATAGTTCTC+AGG + chr1_4:50529452-50529471 None:intergenic 35.0%
CTTCACTTAGATCAATCACT+GGG + chr1_4:50529520-50529539 None:intergenic 35.0%
TGATCTAAGTGAAGCATGTA+AGG - chr1_4:50529526-50529545 Msa0168200:CDS 35.0%
GATCTAAGTGAAGCATGTAA+GGG - chr1_4:50529527-50529546 Msa0168200:CDS 35.0%
GAAAATTATCAAAGCTGCTG+AGG - chr1_4:50529571-50529590 Msa0168200:CDS 35.0%
GATTTCAATGGACCAAATGA+AGG - chr1_4:50529723-50529742 Msa0168200:intron 35.0%
TGCTCATTGTTTCCTTCATT+TGG + chr1_4:50529738-50529757 None:intergenic 35.0%
CAACTGAAAAGGTTCATCTA+TGG - chr1_4:50529860-50529879 Msa0168200:intron 35.0%
TAGACATCCATGTTATCCTT+TGG - chr1_4:50529894-50529913 Msa0168200:intron 35.0%
CTGTATCTAGTTGGATATTC+AGG + chr1_4:50529940-50529959 None:intergenic 35.0%
CTGAATATCCAACTAGATAC+AGG - chr1_4:50529938-50529957 Msa0168200:intron 35.0%
ATCAAACTACTACATGTGCA+AGG + chr1_4:50530153-50530172 None:intergenic 35.0%
GGATTTCTCAAACGAAGTTA+AGG - chr1_4:50530206-50530225 Msa0168200:intron 35.0%
AAGTTAAGGAATTAGGCTCA+AGG - chr1_4:50530220-50530239 Msa0168200:intron 35.0%
TCAAGGCTCATGAATTTGAT+TGG - chr1_4:50530237-50530256 Msa0168200:intron 35.0%
CAAGGCTCATGAATTTGATT+GGG - chr1_4:50530238-50530257 Msa0168200:intron 35.0%
AAGGCTCATGAATTTGATTG+GGG - chr1_4:50530239-50530258 Msa0168200:intron 35.0%
TCATGAATTTGATTGGGGAA+GGG - chr1_4:50530244-50530263 Msa0168200:intron 35.0%
! CTTGCATTAAAATGGTGATG+AGG + chr1_4:50530395-50530414 None:intergenic 35.0%
!! GGTCTTCAAGTATTGAAAGA+TGG - chr1_4:50530426-50530445 Msa0168200:intron 35.0%
AAAAGAGTCGTTGATATTGG+AGG - chr1_4:50530600-50530619 Msa0168200:CDS 35.0%
AAAGAGTCGTTGATATTGGA+GGG - chr1_4:50530601-50530620 Msa0168200:CDS 35.0%
ATAGTAAGGGCCTACATTTA+GGG + chr1_4:50530917-50530936 None:intergenic 35.0%
TATAGTAAGGGCCTACATTT+AGG + chr1_4:50530918-50530937 None:intergenic 35.0%
TCTCTTATAAATAGGACGAG+AGG - chr1_4:50531126-50531145 Msa0168200:CDS 35.0%
CTCTTATAAATAGGACGAGA+GGG - chr1_4:50531127-50531146 Msa0168200:CDS 35.0%
TGCCTACAGATAATCAGTAA+TGG - chr1_4:50531293-50531312 Msa0168200:intron 35.0%
GTGCAAACCTTACAAATACA+AGG - chr1_4:50531454-50531473 Msa0168200:CDS 35.0%
! TGGCATAGTTTTCTTGTGTC+TGG + chr1_4:50529246-50529265 None:intergenic 40.0%
! AATGGGATTTTCACATTCCC+TGG + chr1_4:50529485-50529504 None:intergenic 40.0%
CTGGGATGCTATTACTGAAT+GGG + chr1_4:50529502-50529521 None:intergenic 40.0%
ACTGGGATGCTATTACTGAA+TGG + chr1_4:50529503-50529522 None:intergenic 40.0%
GCTTCACTTAGATCAATCAC+TGG + chr1_4:50529521-50529540 None:intergenic 40.0%
TGAGGAGTTTGGATTCTTTC+AGG - chr1_4:50529589-50529608 Msa0168200:CDS 40.0%
AGTAAACATCTTGCATGGCT+TGG + chr1_4:50529824-50529843 None:intergenic 40.0%
CTGCTAGTAAACATCTTGCA+TGG + chr1_4:50529829-50529848 None:intergenic 40.0%
TACACGCTCTCTGTTAGAAA+AGG + chr1_4:50530184-50530203 None:intergenic 40.0%
!! TTTTCTAACAGAGAGCGTGT+AGG - chr1_4:50530183-50530202 Msa0168200:intron 40.0%
! TTTCTAACAGAGAGCGTGTA+GGG - chr1_4:50530184-50530203 Msa0168200:intron 40.0%
CTCATGAATTTGATTGGGGA+AGG - chr1_4:50530243-50530262 Msa0168200:intron 40.0%
GTTGTGACTAATGCAAGTCA+AGG - chr1_4:50531341-50531360 Msa0168200:intron 40.0%
TGCAATTATCTGAAGGAGCT+AGG + chr1_4:50531388-50531407 None:intergenic 40.0%
TCTACGGTGCAATTATCTGA+AGG + chr1_4:50531395-50531414 None:intergenic 40.0%
TCATCGATGAAAGATTGTGC+TGG + chr1_4:50531419-50531438 None:intergenic 40.0%
TTGTAAGGTTTGCACATTGG+TGG + chr1_4:50531449-50531468 None:intergenic 40.0%
TTTCCACCAGAATCAAGACC+AGG - chr1_4:50529464-50529483 Msa0168200:CDS 45.0%
TTCCACCAGAATCAAGACCA+GGG - chr1_4:50529465-50529484 Msa0168200:CDS 45.0%
!! ACATTCCCTGGTCTTGATTC+TGG + chr1_4:50529473-50529492 None:intergenic 45.0%
ATCAAAGCTGCTGAGGAGTT+TGG - chr1_4:50529578-50529597 Msa0168200:CDS 45.0%
! ACATCTTGCATGGCTTGGAA+GGG + chr1_4:50529819-50529838 None:intergenic 45.0%
! AACATCTTGCATGGCTTGGA+AGG + chr1_4:50529820-50529839 None:intergenic 45.0%
CACTGCTCCAAAGGATAACA+TGG + chr1_4:50529904-50529923 None:intergenic 45.0%
!! CATGTTATCCTTTGGAGCAG+TGG - chr1_4:50529902-50529921 Msa0168200:intron 45.0%
AAATGTTGCCACTGCTCCAA+AGG + chr1_4:50529913-50529932 None:intergenic 45.0%
TGGAGCAGTGGCAACATTTA+TGG - chr1_4:50529914-50529933 Msa0168200:intron 45.0%
! TTCTAACAGAGAGCGTGTAG+GGG - chr1_4:50530185-50530204 Msa0168200:intron 45.0%
AATTTGATTGGGGAAGGGCT+TGG - chr1_4:50530249-50530268 Msa0168200:intron 45.0%
CCAATGCCAAACTTGGTTCA+GGG + chr1_4:50530347-50530366 None:intergenic 45.0%
CCTGAACCAAGTTTGGCATT+GGG - chr1_4:50530345-50530364 Msa0168200:intron 45.0%
CTCATTCCCAATGCCAAACT+TGG + chr1_4:50530354-50530373 None:intergenic 45.0%
! TGGAACATGGATTGCTCTTG+AGG - chr1_4:50530446-50530465 Msa0168200:intron 45.0%
TTAATAAGCGTACCTGCAGC+TGG + chr1_4:50530506-50530525 None:intergenic 45.0%
! GTGGTCACAACTTTTCGCTT+CGG - chr1_4:50530623-50530642 Msa0168200:CDS 45.0%
!! AACTTGCTAGAGAGTTTGCC+AGG - chr1_4:50530996-50531015 Msa0168200:intron 45.0%
!! GAAAGATTGTGCTGGCTCTA+CGG + chr1_4:50531411-50531430 None:intergenic 45.0%
!! TCATTATATATAAATATAAA+TGG - chr1_4:50530526-50530545 Msa0168200:CDS 5.0%
ACTATGCCATGCGAACCACA+TGG - chr1_4:50529257-50529276 Msa0168200:three_prime_UTR 50.0%
CTATGCCATGCGAACCACAT+GGG - chr1_4:50529258-50529277 Msa0168200:three_prime_UTR 50.0%
!! TTCCCTGGTCTTGATTCTGG+TGG + chr1_4:50529470-50529489 None:intergenic 50.0%
! GAAGGGCTTGGTTTGAAGTG+TGG - chr1_4:50530261-50530280 Msa0168200:intron 50.0%
!! AAACTTGGTTCAGGGCATCG+TGG + chr1_4:50530339-50530358 None:intergenic 50.0%
ACGATGCCCTGAACCAAGTT+TGG - chr1_4:50530338-50530357 Msa0168200:intron 50.0%
CCCTGAACCAAGTTTGGCAT+TGG - chr1_4:50530344-50530363 Msa0168200:intron 50.0%
CCCAATGCCAAACTTGGTTC+AGG + chr1_4:50530348-50530367 None:intergenic 50.0%
AAATGTAGGCTACCAGCTGC+AGG - chr1_4:50530491-50530510 Msa0168200:CDS 50.0%
GAGTCGTTGATATTGGAGGG+TGG - chr1_4:50530604-50530623 Msa0168200:CDS 50.0%
GCATACCCATGTGGTTCGCA+TGG + chr1_4:50529266-50529285 None:intergenic 55.0%
GCAAGTCAAGGTCGCACAAC+TGG - chr1_4:50531353-50531372 Msa0168200:intron 55.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 50529242 50531736 50529242 ID=Msa0168200;Name=Msa0168200
chr1_4 mRNA 50529242 50531736 50529242 ID=Msa0168200-mRNA-1;Parent=Msa0168200;Name=Msa0168200-mRNA-1;_AED=0.06;_eAED=0.06;_QI=162|1|1|1|1|1|4|183|342
chr1_4 exon 50529242 50529676 50529242 ID=Msa0168200-mRNA-1:exon:14888;Parent=Msa0168200-mRNA-1
chr1_4 exon 50530466 50530784 50530466 ID=Msa0168200-mRNA-1:exon:14887;Parent=Msa0168200-mRNA-1
chr1_4 exon 50531019 50531269 50531019 ID=Msa0168200-mRNA-1:exon:14886;Parent=Msa0168200-mRNA-1
chr1_4 exon 50531368 50531736 50531368 ID=Msa0168200-mRNA-1:exon:14885;Parent=Msa0168200-mRNA-1
chr1_4 five_prime_UTR 50531575 50531736 50531575 ID=Msa0168200-mRNA-1:five_prime_utr;Parent=Msa0168200-mRNA-1
chr1_4 CDS 50531368 50531574 50531368 ID=Msa0168200-mRNA-1:cds;Parent=Msa0168200-mRNA-1
chr1_4 CDS 50531019 50531269 50531019 ID=Msa0168200-mRNA-1:cds;Parent=Msa0168200-mRNA-1
chr1_4 CDS 50530466 50530784 50530466 ID=Msa0168200-mRNA-1:cds;Parent=Msa0168200-mRNA-1
chr1_4 CDS 50529425 50529676 50529425 ID=Msa0168200-mRNA-1:cds;Parent=Msa0168200-mRNA-1
chr1_4 three_prime_UTR 50529242 50529424 50529242 ID=Msa0168200-mRNA-1:three_prime_utr;Parent=Msa0168200-mRNA-1
Gene Sequence

>Msa0168200

ATGGAGAAACTTATTACAAATCGTTGGTCAAATATTCAATATGTTCCTGAGAACTATATATTTCCACCAGAATCAAGACCAGGGAATGTGAAAATCCCATTCAGTAATAGCATCCCAGTGATTGATCTAAGTGAAGCATGTAAGGGTGATAGAAGCAATATAATCAAGAAAATTATCAAAGCTGCTGAGGAGTTTGGATTCTTTCAGGTTATTAATCATGGGATTTCAATGGACCAAATGAAGGAAACAATGAGCATTTTTAAGGAGATTTTTCAGATGCCTGATGAGTACAGAAAAAACTTGTGTACTAATGACCCTTCCAAGCCATGCAAGATGTTTACTAGCAGTTTCAACTATGCAACTGAAAAGGTTCATCTATGGCGAGACAGTCTTAGACATCCATGTTATCCTTTGGAGCAGTGGCAACATTTATGGCCTGAATATCCAACTAGATACAGAGAGCGTGTAGGGGATTTCTCAAACGAAGTTAAGGAATTAGGCTCAAGGCTCATGAATTTGATTGGGGAAGGGCTTGGTTTGAAGTGTGGATATTTTGACAATGATCTTACTGGATCAATGATTCTGTCAGTTAATCATTATCCACGATGCCCTGAACCAAGTTTGGCATTGGGAATGAGTAAACACTCAGATCCAAACCTCATCACCATTTTAATGCAAGATGATGTATCTGGTCTTCAAGTATTGAAAGATGGAACATGGATTGCTCTTGAGGCTCGTCCTTATGCCTTTATCATAAATGTAGGCTACCAGCTGCAGATAATCAGTAATGGTAAACTAAAAAGTGTAGAGCATAGAGTTGTGACTAATGCAAGTCAAGGTCGCACAACTGGTGCATTTTGCCTAGCTCCTTCAGATAATTGCACCGTAGAGCCAGCACAATCTTTCATCGATGAACACAATCCACCAATGTGCAAACCTTACAAATACAAGGATTTCAGTTCCCACTACTTTAACAAATATGGTGACACCGATGTAGTGCTTAAATCATTTGAGGCAACAAAGAATTAA
Protein sequence

>Msa0168200

MEKLITNRWSNIQYVPENYIFPPESRPGNVKIPFSNSIPVIDLSEACKGDRSNIIKKIIKAAEEFGFFQVINHGISMDQMKETMSIFKEIFQMPDEYRKNLCTNDPSKPCKMFTSSFNYATEKVHLWRDSLRHPCYPLEQWQHLWPEYPTRYRERVGDFSNEVKELGSRLMNLIGEGLGLKCGYFDNDLTGSMILSVNHYPRCPEPSLALGMSKHSDPNLITILMQDDVSGLQVLKDGTWIALEARPYAFIINVGYQLQIISNGKLKSVEHRVVTNASQGRTTGAFCLAPSDNCTVEPAQSFIDEHNPPMCKPYKYKDFSSHYFNKYGDTDVVLKSFEATKN*