AlfalfaGEDB | Msa1159590

M. sativa cultivar zhongmu-4 / Msa1159590

KEGG: K10406
GO: GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464
PFAM: PF00307.34

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1159590	XP_013449592.1	94.595	1036	45	6	1	1029	1	1032	0.0	1989

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1159590	sp\|F4J2M6\|KN14L_ARATH	54.653	1010	363	21	11	1002	4	936	0.0	969

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1159590	A0A072UCN2	94.595	1036	45	6	1	1029	1	1032	0.0	1989

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005020	Msa1159590	0.824778	6.712457e-54	-8.615850e-47
Msa0015570	Msa1159590	0.854014	1.631498e-61	-8.615850e-47
Msa0016040	Msa1159590	0.873066	1.960512e-67	-8.615850e-47
Msa0016530	Msa1159590	0.879765	9.535269e-70	-8.615850e-47
Msa0018920	Msa1159590	0.840971	6.305107e-58	-8.615850e-47
Msa0019930	Msa1159590	0.811718	6.086149e-51	-8.615850e-47
Msa0020540	Msa1159590	0.895053	1.380934e-75	-8.615850e-47
Msa0025160	Msa1159590	0.807115	5.918434e-50	-8.615850e-47
Msa0027800	Msa1159590	0.842893	1.957475e-58	-8.615850e-47
Msa0029380	Msa1159590	0.800666	1.294891e-48	-8.615850e-47

Showing 1 to 10 of 540 entries

Previous1 2 3 4 5…54Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1159590	MtrunA17_Chr7g0257301	91.910	1063	48	7	1	1029	1	1059	0.0	1972
Msa1159590	MtrunA17_Chr3g0102921	44.444	792	357	17	12	742	41	810	0.0	600
Msa1159590	MtrunA17_Chr5g0447041	43.542	813	365	14	12	743	37	836	0.0	599
Msa1159590	MtrunA17_Chr1g0195111	59.259	432	164	6	321	742	326	755	1.02e-163	508
Msa1159590	MtrunA17_Chr1g0195111	49.306	144	64	3	14	154	25	162	7.25e-34	141
Msa1159590	MtrunA17_Chr7g0271961	57.339	436	181	4	311	742	321	755	2.84e-163	507
Msa1159590	MtrunA17_Chr7g0271961	48.428	159	72	4	14	168	28	180	7.41e-35	144
Msa1159590	MtrunA17_Chr1g0192481	58.313	403	159	3	346	739	13	415	5.39e-161	487
Msa1159590	MtrunA17_Chr7g0269691	40.000	535	283	15	12	530	27	539	7.41e-107	344
Msa1159590	MtrunA17_Chr5g0411971	45.974	385	189	6	371	744	379	755	5.80e-94	322

Showing 1 to 10 of 71 entries

Previous1 2 3 4 5…8Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1159590	AT3G10310.2	54.415	1042	374	22	11	1028	4	968	995
Msa1159590	AT3G10310.1	54.536	1014	362	21	11	1002	4	940	971
Msa1159590	AT3G44730.2	46.134	776	357	18	14	742	21	782	613
Msa1159590	AT3G44730.3	46.134	776	357	18	14	742	21	782	613
Msa1159590	AT5G27000.1	41.594	916	423	24	2	869	22	873	612
Msa1159590	AT1G09170.5	43.841	828	395	21	27	806	55	860	608
Msa1159590	AT1G09170.4	44.955	783	378	19	27	776	55	817	605
Msa1159590	AT1G09170.2	45.290	775	371	19	27	768	55	809	604
Msa1159590	AT1G09170.3	45.565	744	361	17	27	737	55	787	592
Msa1159590	AT1G09170.7	45.565	744	361	17	27	737	55	787	592

Showing 1 to 10 of 166 entries

Previous1 2 3 4 5…17Next

Find 232 sgRNAs with CRISPR-Local

Find 455 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAGACAATCTTTAAC+AGG	0.383439	7_4:+49242324	Msa1159590:CDS
AAACGCCTACATGCATCAGT+GGG	0.665537	7_4:-49237235	None:intergenic
AAACGGTGGCTATAGACAAC+AGG	0.516688	7_4:+49242773	Msa1159590:exon
AAAGCAAGACTTCGAAACGG+TGG	0.700538	7_4:+49242759	Msa1159590:CDS
AAATACTGATATGCAGGTAA+AGG	0.509302	7_4:-49236682	None:intergenic
AAATTTGTGGGACACGTTCT+TGG	0.332808	7_4:-49235832	None:intergenic
AACAAGTCTCTTTCCTGTTT+GGG	0.298943	7_4:+49240985	Msa1159590:CDS
AACATGGTCCAAGATTTGAA+AGG	0.626815	7_4:+49239572	Msa1159590:CDS
AACCTCTCCAAGTTTCATGA+GGG	0.645480	7_4:-49240665	None:intergenic
AACTTACAGGCTACTGGGAC+TGG	0.425770	7_4:-49242396	None:intergenic

Showing 1 to 10 of 232 entries

Previous1 2 3 4 5…24Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATGGAGAATTGTTCAAGAAA+TGG	+	chr7_4:49236123-49236142	Msa1159590:CDS	30.0%
TGGAGAATTGTTCAAGAAAT+GGG	+	chr7_4:49236124-49236143	Msa1159590:CDS	30.0%
CAATCAAATTGCAATACCTT+AGG	-	chr7_4:49236472-49236491	None:intergenic	30.0%
AAATACTGATATGCAGGTAA+AGG	-	chr7_4:49236685-49236704	None:intergenic	30.0%
TTGGTAAATTTAGAAAACCG+GGG	+	chr7_4:49236876-49236895	Msa1159590:intron	30.0%
TTCAAATGTGACCTAAATTG+AGG	+	chr7_4:49236927-49236946	Msa1159590:intron	30.0%
TTAAAGTGCAAAATGTCAAC+TGG	-	chr7_4:49237459-49237478	None:intergenic	30.0%
AATAAAAACTTCCCATGTTG+TGG	-	chr7_4:49237529-49237548	None:intergenic	30.0%
TGAAAAAGAAGTCAAATAGC+AGG	-	chr7_4:49237611-49237630	None:intergenic	30.0%
ACCTAAACTCAAAGAACAAA+AGG	+	chr7_4:49237651-49237670	Msa1159590:intron	30.0%

Showing 1 to 10 of 455 entries

Previous1 2 3 4 5…46Next

Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	49235817	49243040	49235817	ID=Msa1159590;Name=Msa1159590
chr7_4	mRNA	49235817	49243040	49235817	ID=Msa1159590-mRNA-1;Parent=Msa1159590;Name=Msa1159590-mRNA-1;_AED=0.11;_eAED=0.11;_QI=297\|0.94\|0.89\|1\|1\|1\|19\|253\|1029
chr7_4	exon	49235817	49236189	49235817	ID=Msa1159590-mRNA-1:exon:13492;Parent=Msa1159590-mRNA-1
chr7_4	exon	49236317	49236474	49236317	ID=Msa1159590-mRNA-1:exon:13493;Parent=Msa1159590-mRNA-1
chr7_4	exon	49236631	49236780	49236631	ID=Msa1159590-mRNA-1:exon:13494;Parent=Msa1159590-mRNA-1
chr7_4	exon	49237064	49237319	49237064	ID=Msa1159590-mRNA-1:exon:13495;Parent=Msa1159590-mRNA-1
chr7_4	exon	49237939	49238042	49237939	ID=Msa1159590-mRNA-1:exon:13496;Parent=Msa1159590-mRNA-1
chr7_4	exon	49238152	49238223	49238152	ID=Msa1159590-mRNA-1:exon:13497;Parent=Msa1159590-mRNA-1
chr7_4	exon	49238782	49238883	49238782	ID=Msa1159590-mRNA-1:exon:13498;Parent=Msa1159590-mRNA-1
chr7_4	exon	49239114	49239185	49239114	ID=Msa1159590-mRNA-1:exon:13499;Parent=Msa1159590-mRNA-1
chr7_4	exon	49239314	49239395	49239314	ID=Msa1159590-mRNA-1:exon:13500;Parent=Msa1159590-mRNA-1
chr7_4	exon	49239498	49239593	49239498	ID=Msa1159590-mRNA-1:exon:13501;Parent=Msa1159590-mRNA-1
chr7_4	exon	49239693	49239866	49239693	ID=Msa1159590-mRNA-1:exon:13502;Parent=Msa1159590-mRNA-1
chr7_4	exon	49239979	49240085	49239979	ID=Msa1159590-mRNA-1:exon:13503;Parent=Msa1159590-mRNA-1
chr7_4	exon	49240253	49240393	49240253	ID=Msa1159590-mRNA-1:exon:13504;Parent=Msa1159590-mRNA-1
chr7_4	exon	49240556	49240740	49240556	ID=Msa1159590-mRNA-1:exon:13505;Parent=Msa1159590-mRNA-1
chr7_4	exon	49240843	49241093	49240843	ID=Msa1159590-mRNA-1:exon:13506;Parent=Msa1159590-mRNA-1
chr7_4	exon	49241203	49241366	49241203	ID=Msa1159590-mRNA-1:exon:13507;Parent=Msa1159590-mRNA-1
chr7_4	exon	49241490	49242130	49241490	ID=Msa1159590-mRNA-1:exon:13508;Parent=Msa1159590-mRNA-1
chr7_4	exon	49242227	49242411	49242227	ID=Msa1159590-mRNA-1:exon:13509;Parent=Msa1159590-mRNA-1
chr7_4	exon	49242714	49243040	49242714	ID=Msa1159590-mRNA-1:exon:13510;Parent=Msa1159590-mRNA-1
chr7_4	five_prime_UTR	49235817	49236113	49235817	ID=Msa1159590-mRNA-1:five_prime_utr;Parent=Msa1159590-mRNA-1
chr7_4	CDS	49236114	49236189	49236114	ID=Msa1159590-mRNA-1:cds;Parent=Msa1159590-mRNA-1
chr7_4	CDS	49236317	49236474	49236317	ID=Msa1159590-mRNA-1:cds;Parent=Msa1159590-mRNA-1
chr7_4	CDS	49236631	49236780	49236631	ID=Msa1159590-mRNA-1:cds;Parent=Msa1159590-mRNA-1
chr7_4	CDS	49237064	49237319	49237064	ID=Msa1159590-mRNA-1:cds;Parent=Msa1159590-mRNA-1
chr7_4	CDS	49237939	49238042	49237939	ID=Msa1159590-mRNA-1:cds;Parent=Msa1159590-mRNA-1
chr7_4	CDS	49238152	49238223	49238152	ID=Msa1159590-mRNA-1:cds;Parent=Msa1159590-mRNA-1
chr7_4	CDS	49238782	49238883	49238782	ID=Msa1159590-mRNA-1:cds;Parent=Msa1159590-mRNA-1
chr7_4	CDS	49239114	49239185	49239114	ID=Msa1159590-mRNA-1:cds;Parent=Msa1159590-mRNA-1
chr7_4	CDS	49239314	49239395	49239314	ID=Msa1159590-mRNA-1:cds;Parent=Msa1159590-mRNA-1
chr7_4	CDS	49239498	49239593	49239498	ID=Msa1159590-mRNA-1:cds;Parent=Msa1159590-mRNA-1
chr7_4	CDS	49239693	49239866	49239693	ID=Msa1159590-mRNA-1:cds;Parent=Msa1159590-mRNA-1
chr7_4	CDS	49239979	49240085	49239979	ID=Msa1159590-mRNA-1:cds;Parent=Msa1159590-mRNA-1
chr7_4	CDS	49240253	49240393	49240253	ID=Msa1159590-mRNA-1:cds;Parent=Msa1159590-mRNA-1
chr7_4	CDS	49240556	49240740	49240556	ID=Msa1159590-mRNA-1:cds;Parent=Msa1159590-mRNA-1
chr7_4	CDS	49240843	49241093	49240843	ID=Msa1159590-mRNA-1:cds;Parent=Msa1159590-mRNA-1
chr7_4	CDS	49241203	49241366	49241203	ID=Msa1159590-mRNA-1:cds;Parent=Msa1159590-mRNA-1
chr7_4	CDS	49241490	49242130	49241490	ID=Msa1159590-mRNA-1:cds;Parent=Msa1159590-mRNA-1
chr7_4	CDS	49242227	49242411	49242227	ID=Msa1159590-mRNA-1:cds;Parent=Msa1159590-mRNA-1
chr7_4	CDS	49242714	49242787	49242714	ID=Msa1159590-mRNA-1:cds;Parent=Msa1159590-mRNA-1
chr7_4	three_prime_UTR	49242788	49243040	49242788	ID=Msa1159590-mRNA-1:three_prime_utr;Parent=Msa1159590-mRNA-1

Gene Sequence

>Msa1159590

ATGATCATGATGGAGAATTGTTCAAGAAATGGGTTTCATGATTTCAAAATGTCTTCAAGAAAAGCTGAAGAAGCAGCTTTGAGACGTTATGAAGCAACCCAATGGCTTGAAAACCAAGTGGGTCCTCTTGGAATATCACATCAACCTACTGAGAGAGAACTTGTTTCTTGCTTGAGAAATGGTCTCATTCTTTGTAAAGCCATTAACAAGATTCATCCTGGTGCAGTACCTAAGGTTGTTGATACTCAAGTGCCATTACAACAATCCCTTGCTTGGGATTCTCAGCCTTTACCTGCATATCAGTATTTTGAAAATGTGCGCAATTTTTTGAACGCGGCTGATGAATTAAAGCTTCCGGCTTTTGAAGCTTCTGATCTTGAGAGGGAAAGTGTAGAGAATGGTTCGGCAGGAAAAATTGTTGATTGTATTCTATCACTTAAATGGTTTCATGAGTCAAAGCAGATGAGCAATCAAAGTGGATCCAGCAAACGCTCAAAATCTCCTTTAGTTTTGCAATCAATCAATAGATTGCAACAAAAAGCCACTACTGCATTACCCACTGATGCATGTAGGCGTTTGGATTTGTCTGCAACATCGGAAATAAAGCCTCCTGCTGAGAGTAATGTTCAAAAACAAGAAGCAGAAACTGTGGAGTCACTTGCCAAGATACTCGTTGACCGTATGCTTGATGCCAAAGAAAATATTGATGGAAAGCTTGTTGCTTCTCTTCGTAATGGAAACCTGGATCGAATAGACCTATTTAATCAGATTTTGACTGGTTGTTGTGGGGAACAACCATCTATGAAGTTCCCTGAGTTGCTACTAAAGAATTTAAAAAAAGAAGGGAGTAGCTTACCACCTCATTTCACTTCCAAACCTACAGAATCAGACACTTTCTCTGCACGTCAAAGTCCCAAGTGTAGAGCTTGCTCTGGAAAGTGCACTTGCAACCACAAGCATCTCATAGATATACAGAAAAAAGAACTTCAGGATCTCAAAGCATTGAAGTTGAAAATTAAGAATGAGTTTGAAGAGATGCAATCACAGTTTCAGAGATTTTTCAAAGATATAGGTTGTCAAGTTAATGAGATGTCAACCAAAGCTCTTGGCTATCAAAAAGTAGTCGAAGAGAACAGAAAGCTATACAACATGGTCCAAGATTTGAAAGGCAACATTCGAGTATACTGCAGAATCAGACCTACATTTAGGGCTGAATCCAAGACTGCAGTTGATTTCATTGGGGAAGACGGTTCTCTGTGCATTTTAGATCCATCAAAAACACTAAAAGATGGAAGAAAACTGTTTCAGTTTAATCGGATTTTTGGTCCAACAGCTGGCCAAGATGAGGTTTATAGGGACACTCAACCATTAATTAGATCAGTGATGGATGGATACAACGTTTGTATTTTTGCTTATGGTCAAACTGGATCTGGGAAGACTCACACAATGAGTGGTCCTTCAGGAGGAACATCCAAGGATATGGGAATCAATTATCTGGCTCTTAATGATTTGTTTCAAATGTCTAGTGAAAGGAAGGACAACATAAAGTATGAAATTTATGTCCAAATGGTCGAGATTTACAATGAACAATTTATTTCCTTAACTAACCTCACATTAGAGATCCGGAGCTGTAACGATGATGGCTTGAGCCTTCCTGATGCTAGATTGCGGTCAGTGAACTCTACAACGGATGTTATGACCCTCATGAAACTTGGAGAGGTTAACCGTGCTGTCAGTTCTACTGCAATCAACAATAGGAGTAGTCGTTCACACAGTGTACTTACTGTGCATGTTAGTGGCAAAGATACATCCGGGAACTGCATTCGCAGTTGCCTTCATTTAGTAGACCTTGCCGGAAGTGAAAGAGTAGACAAATCTGAAGTCACAGGAGATAGACTAAAGGAAGCGCTATACATTAACAAGTCTCTTTCCTGTTTGGGAGATGTGATCACGGCGCTGGCTCAGAAGAATTCTCACATTCCTTACAGGAACAGCAAACTCACACTTCTTTTGCAGGACTCCTTAGGTGGACATGCTAAAACATTAATGTTTGCGCATGTGAGTCCCGAAGCAGATTCCTTTGGTGAAACAGTGAGTACTCTGAAGTTTGCTCAGAGGGTTTCCACTGTGGATCTTGGGGCTGCCCGGATGAACAAAGAAACCAGTGAGGTTATGCAACTTAAAGCACAGGTTGAGAACCTTAAGATTGCATTGGCAAACAAGGAAAACTCAAAACCAATGTTCAATAGAACTAAAGAATTCGACACTCCGCTAGAAAAAACTCCACTGCGCCCACGAAGACTTAGTATTGAGAATTGCAGCGGAATAAAGACCAACAAACCTGTGAAAGCTGATGATAAAAATGGAGCTAAATCACCTTCTTATATAGCCCGTTCAAGAAGATTAAGCTTGGAAGGTCCAAGAACTGTCAAAAAAGCACCGGCATGTGTAAACAAAACTTTACAGTTTGAGCCAATATCTCAACAGAAAGATCATCCACAGCAAGATCCAGAAGCAGTGTCAAAGCTAAATGGCCAATTAAGCAATGGCAATTCCAGGTCAGAGTTGCATGTCAAAGCTCCTCCAAGTCCTACGAACATGTATCAGAAGAGGTGTATAAAAGTTGATAGTGAAGTAGTCCAAATTCACCCACATGATCTACCTGAAACACCTGAAGCACAAATGCTAGATAAAAATGATTCAAACAGAATTGTGCCAAGTGACATTGCTGAGTCCATAACAGCTAAGGTTATAGGCACAAATGGAAAAGGGTCCCAGTTTAGAAGATCCCTGAGAACAATTGGGAAACTGATTAATGGACCTGATAAGAAAAACCAACAAATTATGGTTGAAGTGAAGTCACCTGTCAAGGGAAGCAGCACTTATGGAAGTCAGATAAAGTCGCCAATAGCAGCTAGTGAGAAGCCAAAAAGGAGACAATCTTTAACAGGAATACCATCCGGGCCTAACAATTCGCGAAGGTCTTCTCTTGGAGGGAAGCCAGTCCCAGTAGCCTATGAGACAGAGAGAAATGCTAGAACGCCTCCTCCTGTTCGTTCAGAAAGCAAGACTTCGAAACGGTGGCTATAG

Protein sequence

>Msa1159590

MIMMENCSRNGFHDFKMSSRKAEEAALRRYEATQWLENQVGPLGISHQPTERELVSCLRNGLILCKAINKIHPGAVPKVVDTQVPLQQSLAWDSQPLPAYQYFENVRNFLNAADELKLPAFEASDLERESVENGSAGKIVDCILSLKWFHESKQMSNQSGSSKRSKSPLVLQSINRLQQKATTALPTDACRRLDLSATSEIKPPAESNVQKQEAETVESLAKILVDRMLDAKENIDGKLVASLRNGNLDRIDLFNQILTGCCGEQPSMKFPELLLKNLKKEGSSLPPHFTSKPTESDTFSARQSPKCRACSGKCTCNHKHLIDIQKKELQDLKALKLKIKNEFEEMQSQFQRFFKDIGCQVNEMSTKALGYQKVVEENRKLYNMVQDLKGNIRVYCRIRPTFRAESKTAVDFIGEDGSLCILDPSKTLKDGRKLFQFNRIFGPTAGQDEVYRDTQPLIRSVMDGYNVCIFAYGQTGSGKTHTMSGPSGGTSKDMGINYLALNDLFQMSSERKDNIKYEIYVQMVEIYNEQFISLTNLTLEIRSCNDDGLSLPDARLRSVNSTTDVMTLMKLGEVNRAVSSTAINNRSSRSHSVLTVHVSGKDTSGNCIRSCLHLVDLAGSERVDKSEVTGDRLKEALYINKSLSCLGDVITALAQKNSHIPYRNSKLTLLLQDSLGGHAKTLMFAHVSPEADSFGETVSTLKFAQRVSTVDLGAARMNKETSEVMQLKAQVENLKIALANKENSKPMFNRTKEFDTPLEKTPLRPRRLSIENCSGIKTNKPVKADDKNGAKSPSYIARSRRLSLEGPRTVKKAPACVNKTLQFEPISQQKDHPQQDPEAVSKLNGQLSNGNSRSELHVKAPPSPTNMYQKRCIKVDSEVVQIHPHDLPETPEAQMLDKNDSNRIVPSDIAESITAKVIGTNGKGSQFRRSLRTIGKLINGPDKKNQQIMVEVKSPVKGSSTYGSQIKSPIAASEKPKRRQSLTGIPSGPNNSRRSSLGGKPVPVAYETERNARTPPPVRSESKTSKRWL*