Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140730 | XP_013462271.1 | 97.748 | 222 | 5 | 0 | 1 | 222 | 1 | 222 | 1.23e-155 | 440 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140730 | I3SCR3 | 97.748 | 222 | 5 | 0 | 1 | 222 | 1 | 222 | 5.87e-156 | 440 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016040 | Msa0140730 | 0.817632 | 2.982567e-52 | -8.615850e-47 |
| Msa0020540 | Msa0140730 | 0.808163 | 3.545078e-50 | -8.615850e-47 |
| Msa0032980 | Msa0140730 | 0.804935 | 1.701031e-49 | -8.615850e-47 |
| Msa0053070 | Msa0140730 | 0.801841 | 7.443974e-49 | -8.615850e-47 |
| Msa0068150 | Msa0140730 | 0.802572 | 5.265577e-49 | -8.615850e-47 |
| Msa0075530 | Msa0140730 | 0.823888 | 1.087027e-53 | -8.615850e-47 |
| Msa0140380 | Msa0140730 | 0.801532 | 8.614766e-49 | -8.615850e-47 |
| Msa0140730 | Msa0165830 | 0.807340 | 5.301488e-50 | -8.615850e-47 |
| Msa0140730 | Msa0168050 | 0.803718 | 3.049146e-49 | -8.615850e-47 |
| Msa0140730 | Msa0168200 | 0.821613 | 3.678924e-53 | -8.615850e-47 |
| Msa0140730 | Msa0373500 | 0.800072 | 1.710667e-48 | -8.615850e-47 |
| Msa0140730 | Msa0383000 | 0.811598 | 6.463151e-51 | -8.615850e-47 |
| Msa0140730 | Msa0385890 | 0.990995 | 2.318318e-185 | -8.615850e-47 |
| Msa0140730 | Msa0430000 | 0.809149 | 2.182634e-50 | -8.615850e-47 |
| Msa0140730 | Msa0432010 | 0.816919 | 4.314260e-52 | -8.615850e-47 |
| Msa0140730 | Msa0433760 | 0.807526 | 4.842544e-50 | -8.615850e-47 |
| Msa0140730 | Msa0476280 | 0.809904 | 1.502130e-50 | -8.615850e-47 |
| Msa0140730 | Msa0477630 | 0.804001 | 2.664057e-49 | -8.615850e-47 |
| Msa0140730 | Msa0481890 | 0.817310 | 3.524061e-52 | -8.615850e-47 |
| Msa0140730 | Msa0500570 | 0.817272 | 3.594755e-52 | -8.615850e-47 |
| Msa0140730 | Msa0520870 | 0.816842 | 4.489884e-52 | -8.615850e-47 |
| Msa0140730 | Msa0521680 | 0.803824 | 2.898387e-49 | -8.615850e-47 |
| Msa0140730 | Msa0553750 | 0.815384 | 9.504554e-52 | -8.615850e-47 |
| Msa0140730 | Msa0563740 | 0.809285 | 2.041035e-50 | -8.615850e-47 |
| Msa0140730 | Msa0606100 | 0.811443 | 6.985130e-51 | -8.615850e-47 |
| Msa0140730 | Msa0607800 | 0.806441 | 8.215588e-50 | -8.615850e-47 |
| Msa0140730 | Msa0619080 | 0.855572 | 5.766490e-62 | -8.615850e-47 |
| Msa0140730 | Msa0621710 | 0.812155 | 4.886759e-51 | -8.615850e-47 |
| Msa0140730 | Msa0647050 | 0.803656 | 3.141295e-49 | -8.615850e-47 |
| Msa0140730 | Msa0709440 | 0.818488 | 1.909340e-52 | -8.615850e-47 |
| Msa0140730 | Msa0714520 | 0.812887 | 3.381965e-51 | -8.615850e-47 |
| Msa0140730 | Msa0747740 | 0.806145 | 9.481126e-50 | -8.615850e-47 |
| Msa0140730 | Msa0773630 | 0.833339 | 5.646136e-56 | -8.615850e-47 |
| Msa0140730 | Msa0780910 | 0.805648 | 1.206037e-49 | -8.615850e-47 |
| Msa0140730 | Msa0805680 | 0.824432 | 8.097253e-54 | -8.615850e-47 |
| Msa0140730 | Msa0811020 | 0.836851 | 7.344052e-57 | -8.615850e-47 |
| Msa0140730 | Msa0818880 | 0.824362 | 8.411538e-54 | -8.615850e-47 |
| Msa0140730 | Msa0821160 | 0.806084 | 9.765076e-50 | -8.615850e-47 |
| Msa0140730 | Msa0838750 | 0.817825 | 2.697512e-52 | -8.615850e-47 |
| Msa0140730 | Msa0855230 | 0.809649 | 1.704903e-50 | -8.615850e-47 |
| Msa0140730 | Msa0900760 | 0.819315 | 1.239140e-52 | -8.615850e-47 |
| Msa0140730 | Msa0909760 | 0.841499 | 4.578200e-58 | -8.615850e-47 |
| Msa0140730 | Msa1008680 | 0.801569 | 8.463928e-49 | -8.615850e-47 |
| Msa0140730 | Msa1033920 | 0.805886 | 1.074758e-49 | -8.615850e-47 |
| Msa0140730 | Msa1042880 | 0.826399 | 2.771261e-54 | -8.615850e-47 |
| Msa0140730 | Msa1084530 | 0.822852 | 1.897632e-53 | -8.615850e-47 |
| Msa0140730 | Msa1114630 | 0.810257 | 1.261117e-50 | -8.615850e-47 |
| Msa0140730 | Msa1116660 | 0.800262 | 1.564942e-48 | -8.615850e-47 |
| Msa0140730 | Msa1125820 | 0.826319 | 2.895740e-54 | -8.615850e-47 |
| Msa0140730 | Msa1125990 | 0.823871 | 1.096983e-53 | -8.615850e-47 |
| Msa0140730 | Msa1159590 | 0.810521 | 1.106144e-50 | -8.615850e-47 |
| Msa0140730 | Msa1162880 | 0.827687 | 1.363298e-54 | -8.615850e-47 |
| Msa0140730 | Msa1171290 | 0.816869 | 4.427672e-52 | -8.615850e-47 |
| Msa0140730 | Msa1201540 | 0.815818 | 7.608892e-52 | -8.615850e-47 |
| Msa0140730 | Msa1218820 | 0.818338 | 2.065379e-52 | -8.615850e-47 |
| Msa0140730 | Msa1223390 | 0.830104 | 3.544505e-55 | -8.615850e-47 |
| Msa0140730 | Msa1244240 | 0.814569 | 1.440888e-51 | -8.615850e-47 |
| Msa0140730 | Msa1254540 | 0.823387 | 1.423408e-53 | -8.615850e-47 |
| Msa0140730 | Msa1261050 | 0.818843 | 1.586545e-52 | -8.615850e-47 |
| Msa0140730 | Msa1300460 | 0.819643 | 1.042812e-52 | -8.615850e-47 |
| Msa0140730 | Msa1364410 | 0.808902 | 2.464506e-50 | -8.615850e-47 |
| Msa0140730 | Msa1368750 | 0.819033 | 1.436242e-52 | -8.615850e-47 |
| Msa0140730 | Msa1374790 | 0.813636 | 2.315659e-51 | -8.615850e-47 |
| Msa0140730 | Msa1381470 | 0.804398 | 2.202035e-49 | -8.615850e-47 |
| Msa0140730 | Msa1387440 | 0.800991 | 1.111725e-48 | -8.615850e-47 |
| Msa0140730 | Msa1450190 | 0.800005 | 1.765108e-48 | -8.615850e-47 |
| Msa0140730 | Msa1451820 | 0.815173 | 1.058928e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140730 | MtrunA17_Chr3g0143871 | 97.748 | 222 | 5 | 0 | 1 | 222 | 1 | 222 | 1.13e-159 | 440 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140730 | AT5G42330.1 | 45.685 | 197 | 86 | 10 | 6 | 194 | 2 | 185 | 6.20e-35 | 123 |
Find 70 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACAATTGCTTCTGAATTT+AGG | 0.081710 | 1_3:+75006856 | Msa0140730:CDS |
| CGTCTATAACGGTCATATTT+TGG | 0.147501 | 1_3:-75006453 | None:intergenic |
| CACAATTGCTTCTGAATTTA+GGG | 0.195473 | 1_3:+75006857 | Msa0140730:CDS |
| TGAAACAGAACACCAGATTT+AGG | 0.204443 | 1_3:-75006954 | None:intergenic |
| GAAGCAATTGTGCGGTATTC+AGG | 0.265276 | 1_3:-75006846 | None:intergenic |
| AGGATGGTTCGTGAAGAATT+TGG | 0.275638 | 1_3:+75006888 | Msa0140730:CDS |
| TCGGTCGCGGTGGTCGGAGG+TGG | 0.289193 | 1_3:-75006600 | None:intergenic |
| TGGTCGGAGGTGGGATTTCA+TGG | 0.291163 | 1_3:-75006590 | None:intergenic |
| GAAACAGAACACCAGATTTA+GGG | 0.318085 | 1_3:-75006953 | None:intergenic |
| TTTAACCAAGTCTCGGAAAC+TGG | 0.342643 | 1_3:+75006803 | Msa0140730:CDS |
| AGATTTAGGGTTACAAGAAT+TGG | 0.342948 | 1_3:-75006940 | None:intergenic |
| CTTGGTGTTACTGTTGAATC+TGG | 0.346379 | 1_3:+75007107 | Msa0140730:CDS |
| TCAGATCCGGAAGAAATTAA+TGG | 0.347129 | 1_3:+75006915 | Msa0140730:CDS |
| TTGGTACCATTAATTTCTTC+CGG | 0.348296 | 1_3:-75006921 | None:intergenic |
| CGAAGACGCATCGGAGACTT+AGG | 0.358488 | 1_3:-75006625 | None:intergenic |
| CGGTATTCAGGTCGTAGTTC+AGG | 0.361330 | 1_3:-75006834 | None:intergenic |
| AATAATCATCATAATGTTCT+TGG | 0.387259 | 1_3:+75007089 | Msa0140730:CDS |
| AATTCTTGTAACCCTAAATC+TGG | 0.396987 | 1_3:+75006942 | Msa0140730:CDS |
| TATATAATGAATAAATCAAA+TGG | 0.403779 | 1_3:-75007465 | None:intergenic |
| ACTTGATTTAATATGATGTA+TGG | 0.409124 | 1_3:+75007370 | Msa0140730:three_prime_UTR |
| AAAATGTATCAATTTCCATT+TGG | 0.410440 | 1_3:-75007433 | None:intergenic |
| AAGAATACTGCAAGAAAACT+TGG | 0.439698 | 1_3:+75007134 | Msa0140730:CDS |
| CCCTCTCTTCAAACTCCACC+AGG | 0.453304 | 1_3:+75006670 | Msa0140730:CDS |
| GAGAGGTTGAAGAGAAAGAA+AGG | 0.462625 | 1_3:+75007017 | Msa0140730:CDS |
| TAGGGATCGGTCGCGGTGGT+CGG | 0.470489 | 1_3:-75006606 | None:intergenic |
| TTGAACCAGTTTCCGAGACT+TGG | 0.470567 | 1_3:-75006808 | None:intergenic |
| TTATGATGATTATTCACCTT+AGG | 0.472768 | 1_3:-75007080 | None:intergenic |
| CGGTCGCGGTGGTCGGAGGT+GGG | 0.481693 | 1_3:-75006599 | None:intergenic |
| GTAGCGAGGGTTTGAGTCAA+AGG | 0.490870 | 1_3:-75006492 | None:intergenic |
| CTGAATTTAGGGCTTTATCA+AGG | 0.492327 | 1_3:+75006868 | Msa0140730:CDS |
| AATAAGAAACCTCCTCTAGC+TGG | 0.510440 | 1_3:+75007242 | Msa0140730:CDS |
| GTTGGAGCATCGAGAAGAGT+AGG | 0.523400 | 1_3:+75007305 | Msa0140730:CDS |
| ACTGTTGGTGAGAAGAAAGT+TGG | 0.529021 | 1_3:+75007287 | Msa0140730:CDS |
| GGATCGGTCGCGGTGGTCGG+AGG | 0.529657 | 1_3:-75006603 | None:intergenic |
| ATTTAGGGCTTTATCAAGGA+TGG | 0.529903 | 1_3:+75006872 | Msa0140730:CDS |
| CCTGGTGGAGTTTGAAGAGA+GGG | 0.538280 | 1_3:-75006670 | None:intergenic |
| AGAATTTGGAAAATCAGATC+CGG | 0.539534 | 1_3:+75006902 | Msa0140730:CDS |
| ATATAATGAATAAATCAAAT+GGG | 0.543691 | 1_3:-75007464 | None:intergenic |
| CAGGTTCTTTAACCAAGTCT+CGG | 0.545491 | 1_3:+75006796 | Msa0140730:intron |
| TTCTGCTGCTTATTCTGCTG+AGG | 0.545660 | 1_3:+75007175 | Msa0140730:CDS |
| TGTGACTGAAAATGCGGTGC+GGG | 0.546036 | 1_3:-75006538 | None:intergenic |
| TATGCTTAGAAGCATGACTA+AGG | 0.549389 | 1_3:+75007217 | Msa0140730:CDS |
| CTTGATTTAATATGATGTAT+GGG | 0.551596 | 1_3:+75007371 | Msa0140730:three_prime_UTR |
| TTTGATAAATCTGTTACTGT+TGG | 0.555181 | 1_3:+75007272 | Msa0140730:CDS |
| GAAGACGCATCGGAGACTTA+GGG | 0.556071 | 1_3:-75006624 | None:intergenic |
| GGATCCAACGGCTGATGTTG+TGG | 0.565817 | 1_3:-75006432 | None:intergenic |
| TACTAGTATTAAGCAACCTA+AGG | 0.572843 | 1_3:+75007064 | Msa0140730:CDS |
| AAATCCACAACATCAGCCGT+TGG | 0.577335 | 1_3:+75006428 | Msa0140730:five_prime_UTR |
| ATAGAAGAGAGCGTCTATAA+CGG | 0.577974 | 1_3:-75006464 | None:intergenic |
| ATGATGAGTATTCTGCAAGA+AGG | 0.596236 | 1_3:+75006991 | Msa0140730:CDS |
| ATGCTTCTAAGCATATACCT+TGG | 0.602130 | 1_3:-75007209 | None:intergenic |
| ACCTGGTGGAGTTTGAAGAG+AGG | 0.604721 | 1_3:-75006671 | None:intergenic |
| TCAAATCTTGAACCAGCTAG+AGG | 0.605228 | 1_3:-75007254 | None:intergenic |
| CGCATCGGAGACTTAGGGAT+CGG | 0.618390 | 1_3:-75006619 | None:intergenic |
| GTTCGAGTTCGAAGACGCAT+CGG | 0.624113 | 1_3:-75006634 | None:intergenic |
| GGAGACTTAGGGATCGGTCG+CGG | 0.628168 | 1_3:-75006613 | None:intergenic |
| AATCTTGAACCAGCTAGAGG+AGG | 0.634666 | 1_3:-75007251 | None:intergenic |
| CTGAGGTTAGTGAAACTCCA+AGG | 0.634790 | 1_3:+75007192 | Msa0140730:CDS |
| GATTGTGGCAAAGAGTAGCG+AGG | 0.635030 | 1_3:-75006506 | None:intergenic |
| GACTTAGGGATCGGTCGCGG+TGG | 0.645567 | 1_3:-75006610 | None:intergenic |
| TGGTGGAGTTTGAAGAGAGG+GGG | 0.646929 | 1_3:-75006668 | None:intergenic |
| ATTGTGGCAAAGAGTAGCGA+GGG | 0.654080 | 1_3:-75006505 | None:intergenic |
| GAAGAGAAAGAAAGGAGTCA+CGG | 0.667345 | 1_3:+75007025 | Msa0140730:CDS |
| TCTGGTGTTCTGTTTCAGAG+AGG | 0.698623 | 1_3:+75006960 | Msa0140730:CDS |
| CTGGTGGAGTTTGAAGAGAG+GGG | 0.701117 | 1_3:-75006669 | None:intergenic |
| ATTCTGCAAGAAGGAACGAG+AGG | 0.711042 | 1_3:+75007000 | Msa0140730:CDS |
| GCAATGTGTGACTGAAAATG+CGG | 0.711864 | 1_3:-75006544 | None:intergenic |
| TAAATTCAGAAGCAATTGTG+CGG | 0.713706 | 1_3:-75006854 | None:intergenic |
| GAGAAAGAAAGGAGTCACGG+TGG | 0.729465 | 1_3:+75007028 | Msa0140730:CDS |
| GTGTGACTGAAAATGCGGTG+CGG | 0.745677 | 1_3:-75006539 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATCATCATAATGTTCT+TGG | + | chr1_3:75007089-75007108 | Msa0140730:CDS | 20.0% |
| !! | ACTTGATTTAATATGATGTA+TGG | + | chr1_3:75007370-75007389 | Msa0140730:three_prime_UTR | 20.0% |
| !! | CTTGATTTAATATGATGTAT+GGG | + | chr1_3:75007371-75007390 | Msa0140730:three_prime_UTR | 20.0% |
| !! | AAAATGTATCAATTTCCATT+TGG | - | chr1_3:75007436-75007455 | None:intergenic | 20.0% |
| !! | AATAATCATCATAATGTTCT+TGG | + | chr1_3:75007089-75007108 | Msa0140730:CDS | 20.0% |
| !! | ACTTGATTTAATATGATGTA+TGG | + | chr1_3:75007370-75007389 | Msa0140730:three_prime_UTR | 20.0% |
| !! | CTTGATTTAATATGATGTAT+GGG | + | chr1_3:75007371-75007390 | Msa0140730:three_prime_UTR | 20.0% |
| !! | AAAATGTATCAATTTCCATT+TGG | - | chr1_3:75007436-75007455 | None:intergenic | 20.0% |
| ! | GAAATAAGATTATAAGAACC+TGG | - | chr1_3:75006691-75006710 | None:intergenic | 25.0% |
| ! | TTATGATGATTATTCACCTT+AGG | - | chr1_3:75007083-75007102 | None:intergenic | 25.0% |
| ! | TTTGATAAATCTGTTACTGT+TGG | + | chr1_3:75007272-75007291 | Msa0140730:CDS | 25.0% |
| ! | AGGAAAAATTTCGTACTATT+AGG | + | chr1_3:75007325-75007344 | Msa0140730:CDS | 25.0% |
| ! | GGAAAAATTTCGTACTATTA+GGG | + | chr1_3:75007326-75007345 | Msa0140730:CDS | 25.0% |
| !!! | TTCTGTTACTTTTTACCAAA+TGG | + | chr1_3:75007418-75007437 | Msa0140730:three_prime_UTR | 25.0% |
| ! | GAAATAAGATTATAAGAACC+TGG | - | chr1_3:75006691-75006710 | None:intergenic | 25.0% |
| ! | TTATGATGATTATTCACCTT+AGG | - | chr1_3:75007083-75007102 | None:intergenic | 25.0% |
| ! | TTTGATAAATCTGTTACTGT+TGG | + | chr1_3:75007272-75007291 | Msa0140730:CDS | 25.0% |
| ! | AGGAAAAATTTCGTACTATT+AGG | + | chr1_3:75007325-75007344 | Msa0140730:CDS | 25.0% |
| ! | GGAAAAATTTCGTACTATTA+GGG | + | chr1_3:75007326-75007345 | Msa0140730:CDS | 25.0% |
| !!! | TTCTGTTACTTTTTACCAAA+TGG | + | chr1_3:75007418-75007437 | Msa0140730:three_prime_UTR | 25.0% |
| ATGTTGTGGATTTCAAAAAG+TGG | - | chr1_3:75006421-75006440 | None:intergenic | 30.0% | |
| ATAAGATTATAAGAACCTGG+TGG | - | chr1_3:75006688-75006707 | None:intergenic | 30.0% | |
| CCACAAACAAAAAATGTCAA+TGG | - | chr1_3:75006761-75006780 | None:intergenic | 30.0% | |
| !!! | CCATTGACATTTTTTGTTTG+TGG | + | chr1_3:75006758-75006777 | Msa0140730:intron | 30.0% |
| GTGGATTTGAAAATTGAAAC+AGG | + | chr1_3:75006777-75006796 | Msa0140730:intron | 30.0% | |
| TAAATTCAGAAGCAATTGTG+CGG | - | chr1_3:75006857-75006876 | None:intergenic | 30.0% | |
| CACAATTGCTTCTGAATTTA+GGG | + | chr1_3:75006857-75006876 | Msa0140730:CDS | 30.0% | |
| AGAATTTGGAAAATCAGATC+CGG | + | chr1_3:75006902-75006921 | Msa0140730:CDS | 30.0% | |
| TTGGTACCATTAATTTCTTC+CGG | - | chr1_3:75006924-75006943 | None:intergenic | 30.0% | |
| ! | AGATTTAGGGTTACAAGAAT+TGG | - | chr1_3:75006943-75006962 | None:intergenic | 30.0% |
| AATTCTTGTAACCCTAAATC+TGG | + | chr1_3:75006942-75006961 | Msa0140730:CDS | 30.0% | |
| TACTAGTATTAAGCAACCTA+AGG | + | chr1_3:75007064-75007083 | Msa0140730:CDS | 30.0% | |
| AAGAATACTGCAAGAAAACT+TGG | + | chr1_3:75007134-75007153 | Msa0140730:CDS | 30.0% | |
| ATGTTGTGGATTTCAAAAAG+TGG | - | chr1_3:75006421-75006440 | None:intergenic | 30.0% | |
| ATAAGATTATAAGAACCTGG+TGG | - | chr1_3:75006688-75006707 | None:intergenic | 30.0% | |
| CCACAAACAAAAAATGTCAA+TGG | - | chr1_3:75006761-75006780 | None:intergenic | 30.0% | |
| !!! | CCATTGACATTTTTTGTTTG+TGG | + | chr1_3:75006758-75006777 | Msa0140730:intron | 30.0% |
| GTGGATTTGAAAATTGAAAC+AGG | + | chr1_3:75006777-75006796 | Msa0140730:intron | 30.0% | |
| TAAATTCAGAAGCAATTGTG+CGG | - | chr1_3:75006857-75006876 | None:intergenic | 30.0% | |
| CACAATTGCTTCTGAATTTA+GGG | + | chr1_3:75006857-75006876 | Msa0140730:CDS | 30.0% | |
| AGAATTTGGAAAATCAGATC+CGG | + | chr1_3:75006902-75006921 | Msa0140730:CDS | 30.0% | |
| TTGGTACCATTAATTTCTTC+CGG | - | chr1_3:75006924-75006943 | None:intergenic | 30.0% | |
| ! | AGATTTAGGGTTACAAGAAT+TGG | - | chr1_3:75006943-75006962 | None:intergenic | 30.0% |
| AATTCTTGTAACCCTAAATC+TGG | + | chr1_3:75006942-75006961 | Msa0140730:CDS | 30.0% | |
| TACTAGTATTAAGCAACCTA+AGG | + | chr1_3:75007064-75007083 | Msa0140730:CDS | 30.0% | |
| AAGAATACTGCAAGAAAACT+TGG | + | chr1_3:75007134-75007153 | Msa0140730:CDS | 30.0% | |
| ! | CGTCTATAACGGTCATATTT+TGG | - | chr1_3:75006456-75006475 | None:intergenic | 35.0% |
| !! | ATAGAAGAGAGCGTCTATAA+CGG | - | chr1_3:75006467-75006486 | None:intergenic | 35.0% |
| !! | TGCGGGTTTTTATTTGATTG+TGG | - | chr1_3:75006524-75006543 | None:intergenic | 35.0% |
| GCACAATTGCTTCTGAATTT+AGG | + | chr1_3:75006856-75006875 | Msa0140730:CDS | 35.0% | |
| ! | CTGAATTTAGGGCTTTATCA+AGG | + | chr1_3:75006868-75006887 | Msa0140730:CDS | 35.0% |
| ! | ATTTAGGGCTTTATCAAGGA+TGG | + | chr1_3:75006872-75006891 | Msa0140730:CDS | 35.0% |
| TCAGATCCGGAAGAAATTAA+TGG | + | chr1_3:75006915-75006934 | Msa0140730:CDS | 35.0% | |
| GAAACAGAACACCAGATTTA+GGG | - | chr1_3:75006956-75006975 | None:intergenic | 35.0% | |
| TGAAACAGAACACCAGATTT+AGG | - | chr1_3:75006957-75006976 | None:intergenic | 35.0% | |
| ATGATGAGTATTCTGCAAGA+AGG | + | chr1_3:75006991-75007010 | Msa0140730:CDS | 35.0% | |
| ATGCTTCTAAGCATATACCT+TGG | - | chr1_3:75007212-75007231 | None:intergenic | 35.0% | |
| ! | TATGCTTAGAAGCATGACTA+AGG | + | chr1_3:75007217-75007236 | Msa0140730:CDS | 35.0% |
| ! | CGTCTATAACGGTCATATTT+TGG | - | chr1_3:75006456-75006475 | None:intergenic | 35.0% |
| !! | ATAGAAGAGAGCGTCTATAA+CGG | - | chr1_3:75006467-75006486 | None:intergenic | 35.0% |
| !! | TGCGGGTTTTTATTTGATTG+TGG | - | chr1_3:75006524-75006543 | None:intergenic | 35.0% |
| GCACAATTGCTTCTGAATTT+AGG | + | chr1_3:75006856-75006875 | Msa0140730:CDS | 35.0% | |
| ! | CTGAATTTAGGGCTTTATCA+AGG | + | chr1_3:75006868-75006887 | Msa0140730:CDS | 35.0% |
| ! | ATTTAGGGCTTTATCAAGGA+TGG | + | chr1_3:75006872-75006891 | Msa0140730:CDS | 35.0% |
| TCAGATCCGGAAGAAATTAA+TGG | + | chr1_3:75006915-75006934 | Msa0140730:CDS | 35.0% | |
| GAAACAGAACACCAGATTTA+GGG | - | chr1_3:75006956-75006975 | None:intergenic | 35.0% | |
| TGAAACAGAACACCAGATTT+AGG | - | chr1_3:75006957-75006976 | None:intergenic | 35.0% | |
| ATGATGAGTATTCTGCAAGA+AGG | + | chr1_3:75006991-75007010 | Msa0140730:CDS | 35.0% | |
| ATGCTTCTAAGCATATACCT+TGG | - | chr1_3:75007212-75007231 | None:intergenic | 35.0% | |
| ! | TATGCTTAGAAGCATGACTA+AGG | + | chr1_3:75007217-75007236 | Msa0140730:CDS | 35.0% |
| !! | CGGTCATATTTTGGATCCAA+CGG | - | chr1_3:75006447-75006466 | None:intergenic | 40.0% |
| GCAATGTGTGACTGAAAATG+CGG | - | chr1_3:75006547-75006566 | None:intergenic | 40.0% | |
| CAGGTTCTTTAACCAAGTCT+CGG | + | chr1_3:75006796-75006815 | Msa0140730:intron | 40.0% | |
| TTTAACCAAGTCTCGGAAAC+TGG | + | chr1_3:75006803-75006822 | Msa0140730:CDS | 40.0% | |
| AGGATGGTTCGTGAAGAATT+TGG | + | chr1_3:75006888-75006907 | Msa0140730:CDS | 40.0% | |
| GAGAGGTTGAAGAGAAAGAA+AGG | + | chr1_3:75007017-75007036 | Msa0140730:CDS | 40.0% | |
| GAAGAGAAAGAAAGGAGTCA+CGG | + | chr1_3:75007025-75007044 | Msa0140730:CDS | 40.0% | |
| !! | CTTGGTGTTACTGTTGAATC+TGG | + | chr1_3:75007107-75007126 | Msa0140730:CDS | 40.0% |
| AATAAGAAACCTCCTCTAGC+TGG | + | chr1_3:75007242-75007261 | Msa0140730:CDS | 40.0% | |
| TCAAATCTTGAACCAGCTAG+AGG | - | chr1_3:75007257-75007276 | None:intergenic | 40.0% | |
| ! | ACTGTTGGTGAGAAGAAAGT+TGG | + | chr1_3:75007287-75007306 | Msa0140730:CDS | 40.0% |
| !! | CGGTCATATTTTGGATCCAA+CGG | - | chr1_3:75006447-75006466 | None:intergenic | 40.0% |
| GCAATGTGTGACTGAAAATG+CGG | - | chr1_3:75006547-75006566 | None:intergenic | 40.0% | |
| CAGGTTCTTTAACCAAGTCT+CGG | + | chr1_3:75006796-75006815 | Msa0140730:intron | 40.0% | |
| TTTAACCAAGTCTCGGAAAC+TGG | + | chr1_3:75006803-75006822 | Msa0140730:CDS | 40.0% | |
| AGGATGGTTCGTGAAGAATT+TGG | + | chr1_3:75006888-75006907 | Msa0140730:CDS | 40.0% | |
| GAGAGGTTGAAGAGAAAGAA+AGG | + | chr1_3:75007017-75007036 | Msa0140730:CDS | 40.0% | |
| GAAGAGAAAGAAAGGAGTCA+CGG | + | chr1_3:75007025-75007044 | Msa0140730:CDS | 40.0% | |
| !! | CTTGGTGTTACTGTTGAATC+TGG | + | chr1_3:75007107-75007126 | Msa0140730:CDS | 40.0% |
| AATAAGAAACCTCCTCTAGC+TGG | + | chr1_3:75007242-75007261 | Msa0140730:CDS | 40.0% | |
| TCAAATCTTGAACCAGCTAG+AGG | - | chr1_3:75007257-75007276 | None:intergenic | 40.0% | |
| ! | ACTGTTGGTGAGAAGAAAGT+TGG | + | chr1_3:75007287-75007306 | Msa0140730:CDS | 40.0% |
| AAATCCACAACATCAGCCGT+TGG | + | chr1_3:75006428-75006447 | Msa0140730:five_prime_UTR | 45.0% | |
| ATTGTGGCAAAGAGTAGCGA+GGG | - | chr1_3:75006508-75006527 | None:intergenic | 45.0% | |
| TTGAACCAGTTTCCGAGACT+TGG | - | chr1_3:75006811-75006830 | None:intergenic | 45.0% | |
| GAAGCAATTGTGCGGTATTC+AGG | - | chr1_3:75006849-75006868 | None:intergenic | 45.0% | |
| TCTGGTGTTCTGTTTCAGAG+AGG | + | chr1_3:75006960-75006979 | Msa0140730:CDS | 45.0% | |
| ATTCTGCAAGAAGGAACGAG+AGG | + | chr1_3:75007000-75007019 | Msa0140730:CDS | 45.0% | |
| ! | TTCTGCTGCTTATTCTGCTG+AGG | + | chr1_3:75007175-75007194 | Msa0140730:CDS | 45.0% |
| CTGAGGTTAGTGAAACTCCA+AGG | + | chr1_3:75007192-75007211 | Msa0140730:CDS | 45.0% | |
| AATCTTGAACCAGCTAGAGG+AGG | - | chr1_3:75007254-75007273 | None:intergenic | 45.0% | |
| AAATCCACAACATCAGCCGT+TGG | + | chr1_3:75006428-75006447 | Msa0140730:five_prime_UTR | 45.0% | |
| ATTGTGGCAAAGAGTAGCGA+GGG | - | chr1_3:75006508-75006527 | None:intergenic | 45.0% | |
| TTGAACCAGTTTCCGAGACT+TGG | - | chr1_3:75006811-75006830 | None:intergenic | 45.0% | |
| GAAGCAATTGTGCGGTATTC+AGG | - | chr1_3:75006849-75006868 | None:intergenic | 45.0% | |
| TCTGGTGTTCTGTTTCAGAG+AGG | + | chr1_3:75006960-75006979 | Msa0140730:CDS | 45.0% | |
| ATTCTGCAAGAAGGAACGAG+AGG | + | chr1_3:75007000-75007019 | Msa0140730:CDS | 45.0% | |
| ! | TTCTGCTGCTTATTCTGCTG+AGG | + | chr1_3:75007175-75007194 | Msa0140730:CDS | 45.0% |
| CTGAGGTTAGTGAAACTCCA+AGG | + | chr1_3:75007192-75007211 | Msa0140730:CDS | 45.0% | |
| AATCTTGAACCAGCTAGAGG+AGG | - | chr1_3:75007254-75007273 | None:intergenic | 45.0% | |
| GTAGCGAGGGTTTGAGTCAA+AGG | - | chr1_3:75006495-75006514 | None:intergenic | 50.0% | |
| GATTGTGGCAAAGAGTAGCG+AGG | - | chr1_3:75006509-75006528 | None:intergenic | 50.0% | |
| TGTGACTGAAAATGCGGTGC+GGG | - | chr1_3:75006541-75006560 | None:intergenic | 50.0% | |
| GTGTGACTGAAAATGCGGTG+CGG | - | chr1_3:75006542-75006561 | None:intergenic | 50.0% | |
| GAAGACGCATCGGAGACTTA+GGG | - | chr1_3:75006627-75006646 | None:intergenic | 50.0% | |
| ! | GTTCGAGTTCGAAGACGCAT+CGG | - | chr1_3:75006637-75006656 | None:intergenic | 50.0% |
| AAGAGAGGGGGAGTCAAGAA+CGG | - | chr1_3:75006659-75006678 | None:intergenic | 50.0% | |
| TGGTGGAGTTTGAAGAGAGG+GGG | - | chr1_3:75006671-75006690 | None:intergenic | 50.0% | |
| CTGGTGGAGTTTGAAGAGAG+GGG | - | chr1_3:75006672-75006691 | None:intergenic | 50.0% | |
| CCTGGTGGAGTTTGAAGAGA+GGG | - | chr1_3:75006673-75006692 | None:intergenic | 50.0% | |
| ACCTGGTGGAGTTTGAAGAG+AGG | - | chr1_3:75006674-75006693 | None:intergenic | 50.0% | |
| CGGTATTCAGGTCGTAGTTC+AGG | - | chr1_3:75006837-75006856 | None:intergenic | 50.0% | |
| GAGAAAGAAAGGAGTCACGG+TGG | + | chr1_3:75007028-75007047 | Msa0140730:CDS | 50.0% | |
| !! | GTTGGAGCATCGAGAAGAGT+AGG | + | chr1_3:75007305-75007324 | Msa0140730:CDS | 50.0% |
| GTAGCGAGGGTTTGAGTCAA+AGG | - | chr1_3:75006495-75006514 | None:intergenic | 50.0% | |
| GATTGTGGCAAAGAGTAGCG+AGG | - | chr1_3:75006509-75006528 | None:intergenic | 50.0% | |
| TGTGACTGAAAATGCGGTGC+GGG | - | chr1_3:75006541-75006560 | None:intergenic | 50.0% | |
| GTGTGACTGAAAATGCGGTG+CGG | - | chr1_3:75006542-75006561 | None:intergenic | 50.0% | |
| GAAGACGCATCGGAGACTTA+GGG | - | chr1_3:75006627-75006646 | None:intergenic | 50.0% | |
| ! | GTTCGAGTTCGAAGACGCAT+CGG | - | chr1_3:75006637-75006656 | None:intergenic | 50.0% |
| AAGAGAGGGGGAGTCAAGAA+CGG | - | chr1_3:75006659-75006678 | None:intergenic | 50.0% | |
| TGGTGGAGTTTGAAGAGAGG+GGG | - | chr1_3:75006671-75006690 | None:intergenic | 50.0% | |
| CTGGTGGAGTTTGAAGAGAG+GGG | - | chr1_3:75006672-75006691 | None:intergenic | 50.0% | |
| CCTGGTGGAGTTTGAAGAGA+GGG | - | chr1_3:75006673-75006692 | None:intergenic | 50.0% | |
| ACCTGGTGGAGTTTGAAGAG+AGG | - | chr1_3:75006674-75006693 | None:intergenic | 50.0% | |
| CGGTATTCAGGTCGTAGTTC+AGG | - | chr1_3:75006837-75006856 | None:intergenic | 50.0% | |
| GAGAAAGAAAGGAGTCACGG+TGG | + | chr1_3:75007028-75007047 | Msa0140730:CDS | 50.0% | |
| !! | GTTGGAGCATCGAGAAGAGT+AGG | + | chr1_3:75007305-75007324 | Msa0140730:CDS | 50.0% |
| GGATCCAACGGCTGATGTTG+TGG | - | chr1_3:75006435-75006454 | None:intergenic | 55.0% | |
| TGGTCGGAGGTGGGATTTCA+TGG | - | chr1_3:75006593-75006612 | None:intergenic | 55.0% | |
| CGCATCGGAGACTTAGGGAT+CGG | - | chr1_3:75006622-75006641 | None:intergenic | 55.0% | |
| CGAAGACGCATCGGAGACTT+AGG | - | chr1_3:75006628-75006647 | None:intergenic | 55.0% | |
| CCCTCTCTTCAAACTCCACC+AGG | + | chr1_3:75006670-75006689 | Msa0140730:CDS | 55.0% | |
| GGATCCAACGGCTGATGTTG+TGG | - | chr1_3:75006435-75006454 | None:intergenic | 55.0% | |
| TGGTCGGAGGTGGGATTTCA+TGG | - | chr1_3:75006593-75006612 | None:intergenic | 55.0% | |
| CGCATCGGAGACTTAGGGAT+CGG | - | chr1_3:75006622-75006641 | None:intergenic | 55.0% | |
| CGAAGACGCATCGGAGACTT+AGG | - | chr1_3:75006628-75006647 | None:intergenic | 55.0% | |
| CCCTCTCTTCAAACTCCACC+AGG | + | chr1_3:75006670-75006689 | Msa0140730:CDS | 55.0% | |
| GGAGACTTAGGGATCGGTCG+CGG | - | chr1_3:75006616-75006635 | None:intergenic | 60.0% | |
| GGAGACTTAGGGATCGGTCG+CGG | - | chr1_3:75006616-75006635 | None:intergenic | 60.0% | |
| TAGGGATCGGTCGCGGTGGT+CGG | - | chr1_3:75006609-75006628 | None:intergenic | 65.0% | |
| GACTTAGGGATCGGTCGCGG+TGG | - | chr1_3:75006613-75006632 | None:intergenic | 65.0% | |
| TAGGGATCGGTCGCGGTGGT+CGG | - | chr1_3:75006609-75006628 | None:intergenic | 65.0% | |
| GACTTAGGGATCGGTCGCGG+TGG | - | chr1_3:75006613-75006632 | None:intergenic | 65.0% | |
| CGGTCGCGGTGGTCGGAGGT+GGG | - | chr1_3:75006602-75006621 | None:intergenic | 75.0% | |
| TCGGTCGCGGTGGTCGGAGG+TGG | - | chr1_3:75006603-75006622 | None:intergenic | 75.0% | |
| GGATCGGTCGCGGTGGTCGG+AGG | - | chr1_3:75006606-75006625 | None:intergenic | 75.0% | |
| CGGTCGCGGTGGTCGGAGGT+GGG | - | chr1_3:75006602-75006621 | None:intergenic | 75.0% | |
| TCGGTCGCGGTGGTCGGAGG+TGG | - | chr1_3:75006603-75006622 | None:intergenic | 75.0% | |
| GGATCGGTCGCGGTGGTCGG+AGG | - | chr1_3:75006606-75006625 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 75006402 | 75007478 | 75006402 | ID=Msa0140730;Name=Msa0140730 |
| chr1_3 | mRNA | 75006402 | 75007478 | 75006402 | ID=Msa0140730-mRNA-1;Parent=Msa0140730;Name=Msa0140730-mRNA-1;_AED=0.01;_eAED=0.01;_QI=169|1|1|1|1|1|2|132|222 |
| chr1_3 | exon | 75006402 | 75006691 | 75006402 | ID=Msa0140730-mRNA-1:exon:26236;Parent=Msa0140730-mRNA-1 |
| chr1_3 | exon | 75006799 | 75007478 | 75006799 | ID=Msa0140730-mRNA-1:exon:26237;Parent=Msa0140730-mRNA-1 |
| chr1_3 | five_prime_UTR | 75006402 | 75006570 | 75006402 | ID=Msa0140730-mRNA-1:five_prime_utr;Parent=Msa0140730-mRNA-1 |
| chr1_3 | CDS | 75006571 | 75006691 | 75006571 | ID=Msa0140730-mRNA-1:cds;Parent=Msa0140730-mRNA-1 |
| chr1_3 | CDS | 75006799 | 75007346 | 75006799 | ID=Msa0140730-mRNA-1:cds;Parent=Msa0140730-mRNA-1 |
| chr1_3 | three_prime_UTR | 75007347 | 75007478 | 75007347 | ID=Msa0140730-mRNA-1:three_prime_utr;Parent=Msa0140730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
