Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385890 | XP_013462271.1 | 97.748 | 222 | 5 | 0 | 1 | 222 | 1 | 222 | 1.23e-155 | 440 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385890 | I3SCR3 | 97.748 | 222 | 5 | 0 | 1 | 222 | 1 | 222 | 5.87e-156 | 440 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016040 | Msa0385890 | 0.809520 | 1.816898e-50 | -8.615850e-47 |
| Msa0020540 | Msa0385890 | 0.801730 | 7.844204e-49 | -8.615850e-47 |
| Msa0032980 | Msa0385890 | 0.802893 | 4.520066e-49 | -8.615850e-47 |
| Msa0075530 | Msa0385890 | 0.819137 | 1.360075e-52 | -8.615850e-47 |
| Msa0140730 | Msa0385890 | 0.990995 | 2.318318e-185 | -8.615850e-47 |
| Msa0165830 | Msa0385890 | 0.805086 | 1.581659e-49 | -8.615850e-47 |
| Msa0168200 | Msa0385890 | 0.818735 | 1.678215e-52 | -8.615850e-47 |
| Msa0383000 | Msa0385890 | 0.804569 | 2.028880e-49 | -8.615850e-47 |
| Msa0385890 | Msa0430000 | 0.809089 | 2.247849e-50 | -8.615850e-47 |
| Msa0385890 | Msa0432010 | 0.810463 | 1.138451e-50 | -8.615850e-47 |
| Msa0385890 | Msa0433760 | 0.800498 | 1.401363e-48 | -8.615850e-47 |
| Msa0385890 | Msa0476280 | 0.806064 | 9.863633e-50 | -8.615850e-47 |
| Msa0385890 | Msa0481890 | 0.814217 | 1.723886e-51 | -8.615850e-47 |
| Msa0385890 | Msa0500570 | 0.817593 | 3.042350e-52 | -8.615850e-47 |
| Msa0385890 | Msa0520870 | 0.808921 | 2.442110e-50 | -8.615850e-47 |
| Msa0385890 | Msa0553750 | 0.814668 | 1.370165e-51 | -8.615850e-47 |
| Msa0385890 | Msa0563740 | 0.800074 | 1.709288e-48 | -8.615850e-47 |
| Msa0385890 | Msa0606100 | 0.810793 | 9.659461e-51 | -8.615850e-47 |
| Msa0385890 | Msa0607800 | 0.801694 | 7.979263e-49 | -8.615850e-47 |
| Msa0385890 | Msa0619080 | 0.853050 | 3.086095e-61 | -8.615850e-47 |
| Msa0385890 | Msa0621710 | 0.807106 | 5.942845e-50 | -8.615850e-47 |
| Msa0385890 | Msa0709440 | 0.814014 | 1.911140e-51 | -8.615850e-47 |
| Msa0385890 | Msa0714520 | 0.809546 | 1.793503e-50 | -8.615850e-47 |
| Msa0385890 | Msa0773630 | 0.830225 | 3.310896e-55 | -8.615850e-47 |
| Msa0385890 | Msa0780910 | 0.800132 | 1.663245e-48 | -8.615850e-47 |
| Msa0385890 | Msa0805680 | 0.819948 | 8.881983e-53 | -8.615850e-47 |
| Msa0385890 | Msa0811020 | 0.836930 | 7.011131e-57 | -8.615850e-47 |
| Msa0385890 | Msa0818880 | 0.821985 | 3.016578e-53 | -8.615850e-47 |
| Msa0385890 | Msa0821160 | 0.802808 | 4.704940e-49 | -8.615850e-47 |
| Msa0385890 | Msa0838750 | 0.813084 | 3.061024e-51 | -8.615850e-47 |
| Msa0385890 | Msa0855230 | 0.802949 | 4.401551e-49 | -8.615850e-47 |
| Msa0385890 | Msa0900760 | 0.812542 | 4.023420e-51 | -8.615850e-47 |
| Msa0385890 | Msa0909760 | 0.834502 | 2.889036e-56 | -8.615850e-47 |
| Msa0385890 | Msa1042880 | 0.824410 | 8.193911e-54 | -8.615850e-47 |
| Msa0385890 | Msa1084530 | 0.818434 | 1.964321e-52 | -8.615850e-47 |
| Msa0385890 | Msa1114630 | 0.804251 | 2.362442e-49 | -8.615850e-47 |
| Msa0385890 | Msa1125820 | 0.820928 | 5.293246e-53 | -8.615850e-47 |
| Msa0385890 | Msa1125990 | 0.819007 | 1.456089e-52 | -8.615850e-47 |
| Msa0385890 | Msa1159590 | 0.809010 | 2.337085e-50 | -8.615850e-47 |
| Msa0385890 | Msa1162880 | 0.819240 | 1.288431e-52 | -8.615850e-47 |
| Msa0385890 | Msa1171290 | 0.812878 | 3.396033e-51 | -8.615850e-47 |
| Msa0385890 | Msa1201540 | 0.823837 | 1.117131e-53 | -8.615850e-47 |
| Msa0385890 | Msa1218820 | 0.813599 | 2.359315e-51 | -8.615850e-47 |
| Msa0385890 | Msa1223390 | 0.828988 | 6.620186e-55 | -8.615850e-47 |
| Msa0385890 | Msa1244240 | 0.804021 | 2.638162e-49 | -8.615850e-47 |
| Msa0385890 | Msa1254540 | 0.818266 | 2.144157e-52 | -8.615850e-47 |
| Msa0385890 | Msa1261050 | 0.817346 | 3.459234e-52 | -8.615850e-47 |
| Msa0385890 | Msa1300460 | 0.815375 | 9.546055e-52 | -8.615850e-47 |
| Msa0385890 | Msa1364410 | 0.807659 | 4.537280e-50 | -8.615850e-47 |
| Msa0385890 | Msa1368750 | 0.814035 | 1.890907e-51 | -8.615850e-47 |
| Msa0385890 | Msa1374790 | 0.808350 | 3.233141e-50 | -8.615850e-47 |
| Msa0385890 | Msa1381470 | 0.800077 | 1.707090e-48 | -8.615850e-47 |
| Msa0385890 | Msa1384150 | 0.800064 | 1.717513e-48 | -8.615850e-47 |
| Msa0385890 | Msa1451820 | 0.810030 | 1.411163e-50 | -8.615850e-47 |
| Msa0272260 | Msa0385890 | 0.800210 | 1.604042e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385890 | MtrunA17_Chr3g0143871 | 97.748 | 222 | 5 | 0 | 1 | 222 | 1 | 222 | 1.13e-159 | 440 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0385890 | AT5G42330.1 | 45.685 | 197 | 86 | 10 | 6 | 194 | 2 | 185 | 6.20e-35 | 123 |
Find 70 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACAATTGCTTCTGAATTT+AGG | 0.081710 | 3_1:+89592255 | Msa0385890:CDS |
| CGTCTATAACGGTCATATTT+TGG | 0.147501 | 3_1:-89591852 | None:intergenic |
| CACAATTGCTTCTGAATTTA+GGG | 0.195473 | 3_1:+89592256 | Msa0385890:CDS |
| TGAAACAGAACACCAGATTT+AGG | 0.204443 | 3_1:-89592353 | None:intergenic |
| GAAGCAATTGTGCGGTATTC+AGG | 0.265276 | 3_1:-89592245 | None:intergenic |
| AGGATGGTTCGTGAAGAATT+TGG | 0.275638 | 3_1:+89592287 | Msa0385890:CDS |
| TCGGTCGCGGTGGTCGGAGG+TGG | 0.289193 | 3_1:-89591999 | None:intergenic |
| TGGTCGGAGGTGGGATTTCA+TGG | 0.291163 | 3_1:-89591989 | None:intergenic |
| GAAACAGAACACCAGATTTA+GGG | 0.318085 | 3_1:-89592352 | None:intergenic |
| TTTAACCAAGTCTCGGAAAC+TGG | 0.342643 | 3_1:+89592202 | Msa0385890:CDS |
| AGATTTAGGGTTACAAGAAT+TGG | 0.342948 | 3_1:-89592339 | None:intergenic |
| CTTGGTGTTACTGTTGAATC+TGG | 0.346379 | 3_1:+89592506 | Msa0385890:CDS |
| TCAGATCCGGAAGAAATTAA+TGG | 0.347129 | 3_1:+89592314 | Msa0385890:CDS |
| TTGGTACCATTAATTTCTTC+CGG | 0.348296 | 3_1:-89592320 | None:intergenic |
| CGAAGACGCATCGGAGACTT+AGG | 0.358488 | 3_1:-89592024 | None:intergenic |
| CGGTATTCAGGTCGTAGTTC+AGG | 0.361330 | 3_1:-89592233 | None:intergenic |
| AATAATCATCATAATGTTCT+TGG | 0.387259 | 3_1:+89592488 | Msa0385890:CDS |
| AATTCTTGTAACCCTAAATC+TGG | 0.396987 | 3_1:+89592341 | Msa0385890:CDS |
| TATATAATGAATAAATCAAA+TGG | 0.403779 | 3_1:-89592864 | None:intergenic |
| ACTTGATTTAATATGATGTA+TGG | 0.409124 | 3_1:+89592769 | Msa0385890:three_prime_UTR |
| AAAATGTATCAATTTCCATT+TGG | 0.410440 | 3_1:-89592832 | None:intergenic |
| AAGAATACTGCAAGAAAACT+TGG | 0.439698 | 3_1:+89592533 | Msa0385890:CDS |
| CCCTCTCTTCAAACTCCACC+AGG | 0.453304 | 3_1:+89592069 | Msa0385890:CDS |
| GAGAGGTTGAAGAGAAAGAA+AGG | 0.462625 | 3_1:+89592416 | Msa0385890:CDS |
| TAGGGATCGGTCGCGGTGGT+CGG | 0.470489 | 3_1:-89592005 | None:intergenic |
| TTGAACCAGTTTCCGAGACT+TGG | 0.470567 | 3_1:-89592207 | None:intergenic |
| TTATGATGATTATTCACCTT+AGG | 0.472768 | 3_1:-89592479 | None:intergenic |
| CGGTCGCGGTGGTCGGAGGT+GGG | 0.481693 | 3_1:-89591998 | None:intergenic |
| GTAGCGAGGGTTTGAGTCAA+AGG | 0.490870 | 3_1:-89591891 | None:intergenic |
| CTGAATTTAGGGCTTTATCA+AGG | 0.492327 | 3_1:+89592267 | Msa0385890:CDS |
| AATAAGAAACCTCCTCTAGC+TGG | 0.510440 | 3_1:+89592641 | Msa0385890:CDS |
| GTTGGAGCATCGAGAAGAGT+AGG | 0.523400 | 3_1:+89592704 | Msa0385890:CDS |
| ACTGTTGGTGAGAAGAAAGT+TGG | 0.529021 | 3_1:+89592686 | Msa0385890:CDS |
| GGATCGGTCGCGGTGGTCGG+AGG | 0.529657 | 3_1:-89592002 | None:intergenic |
| ATTTAGGGCTTTATCAAGGA+TGG | 0.529903 | 3_1:+89592271 | Msa0385890:CDS |
| CCTGGTGGAGTTTGAAGAGA+GGG | 0.538280 | 3_1:-89592069 | None:intergenic |
| AGAATTTGGAAAATCAGATC+CGG | 0.539534 | 3_1:+89592301 | Msa0385890:CDS |
| ATATAATGAATAAATCAAAT+GGG | 0.543691 | 3_1:-89592863 | None:intergenic |
| CAGGTTCTTTAACCAAGTCT+CGG | 0.545491 | 3_1:+89592195 | Msa0385890:intron |
| TTCTGCTGCTTATTCTGCTG+AGG | 0.545660 | 3_1:+89592574 | Msa0385890:CDS |
| TGTGACTGAAAATGCGGTGC+GGG | 0.546036 | 3_1:-89591937 | None:intergenic |
| TATGCTTAGAAGCATGACTA+AGG | 0.549389 | 3_1:+89592616 | Msa0385890:CDS |
| CTTGATTTAATATGATGTAT+GGG | 0.551596 | 3_1:+89592770 | Msa0385890:three_prime_UTR |
| TTTGATAAATCTGTTACTGT+TGG | 0.555181 | 3_1:+89592671 | Msa0385890:CDS |
| GAAGACGCATCGGAGACTTA+GGG | 0.556071 | 3_1:-89592023 | None:intergenic |
| GGATCCAACGGCTGATGTTG+TGG | 0.565817 | 3_1:-89591831 | None:intergenic |
| TACTAGTATTAAGCAACCTA+AGG | 0.572843 | 3_1:+89592463 | Msa0385890:CDS |
| AAATCCACAACATCAGCCGT+TGG | 0.577335 | 3_1:+89591827 | Msa0385890:five_prime_UTR |
| ATAGAAGAGAGCGTCTATAA+CGG | 0.577974 | 3_1:-89591863 | None:intergenic |
| ATGATGAGTATTCTGCAAGA+AGG | 0.596236 | 3_1:+89592390 | Msa0385890:CDS |
| ATGCTTCTAAGCATATACCT+TGG | 0.602130 | 3_1:-89592608 | None:intergenic |
| ACCTGGTGGAGTTTGAAGAG+AGG | 0.604721 | 3_1:-89592070 | None:intergenic |
| TCAAATCTTGAACCAGCTAG+AGG | 0.605228 | 3_1:-89592653 | None:intergenic |
| CGCATCGGAGACTTAGGGAT+CGG | 0.618390 | 3_1:-89592018 | None:intergenic |
| GTTCGAGTTCGAAGACGCAT+CGG | 0.624113 | 3_1:-89592033 | None:intergenic |
| GGAGACTTAGGGATCGGTCG+CGG | 0.628168 | 3_1:-89592012 | None:intergenic |
| AATCTTGAACCAGCTAGAGG+AGG | 0.634666 | 3_1:-89592650 | None:intergenic |
| CTGAGGTTAGTGAAACTCCA+AGG | 0.634790 | 3_1:+89592591 | Msa0385890:CDS |
| GATTGTGGCAAAGAGTAGCG+AGG | 0.635030 | 3_1:-89591905 | None:intergenic |
| GACTTAGGGATCGGTCGCGG+TGG | 0.645567 | 3_1:-89592009 | None:intergenic |
| TGGTGGAGTTTGAAGAGAGG+GGG | 0.646929 | 3_1:-89592067 | None:intergenic |
| ATTGTGGCAAAGAGTAGCGA+GGG | 0.654080 | 3_1:-89591904 | None:intergenic |
| GAAGAGAAAGAAAGGAGTCA+CGG | 0.667345 | 3_1:+89592424 | Msa0385890:CDS |
| TCTGGTGTTCTGTTTCAGAG+AGG | 0.698623 | 3_1:+89592359 | Msa0385890:CDS |
| CTGGTGGAGTTTGAAGAGAG+GGG | 0.701117 | 3_1:-89592068 | None:intergenic |
| ATTCTGCAAGAAGGAACGAG+AGG | 0.711042 | 3_1:+89592399 | Msa0385890:CDS |
| GCAATGTGTGACTGAAAATG+CGG | 0.711864 | 3_1:-89591943 | None:intergenic |
| TAAATTCAGAAGCAATTGTG+CGG | 0.713706 | 3_1:-89592253 | None:intergenic |
| GAGAAAGAAAGGAGTCACGG+TGG | 0.729465 | 3_1:+89592427 | Msa0385890:CDS |
| GTGTGACTGAAAATGCGGTG+CGG | 0.745677 | 3_1:-89591938 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATCATCATAATGTTCT+TGG | + | chr3_1:89592488-89592507 | Msa0385890:CDS | 20.0% |
| !! | ACTTGATTTAATATGATGTA+TGG | + | chr3_1:89592769-89592788 | Msa0385890:three_prime_UTR | 20.0% |
| !! | CTTGATTTAATATGATGTAT+GGG | + | chr3_1:89592770-89592789 | Msa0385890:three_prime_UTR | 20.0% |
| !! | AAAATGTATCAATTTCCATT+TGG | - | chr3_1:89592835-89592854 | None:intergenic | 20.0% |
| !! | AATAATCATCATAATGTTCT+TGG | + | chr3_1:89592488-89592507 | Msa0385890:CDS | 20.0% |
| !! | ACTTGATTTAATATGATGTA+TGG | + | chr3_1:89592769-89592788 | Msa0385890:three_prime_UTR | 20.0% |
| !! | CTTGATTTAATATGATGTAT+GGG | + | chr3_1:89592770-89592789 | Msa0385890:three_prime_UTR | 20.0% |
| !! | AAAATGTATCAATTTCCATT+TGG | - | chr3_1:89592835-89592854 | None:intergenic | 20.0% |
| ! | GAAATAAGATTATAAGAACC+TGG | - | chr3_1:89592090-89592109 | None:intergenic | 25.0% |
| ! | TTATGATGATTATTCACCTT+AGG | - | chr3_1:89592482-89592501 | None:intergenic | 25.0% |
| ! | TTTGATAAATCTGTTACTGT+TGG | + | chr3_1:89592671-89592690 | Msa0385890:CDS | 25.0% |
| ! | AGGAAAAATTTCGTACTATT+AGG | + | chr3_1:89592724-89592743 | Msa0385890:CDS | 25.0% |
| ! | GGAAAAATTTCGTACTATTA+GGG | + | chr3_1:89592725-89592744 | Msa0385890:CDS | 25.0% |
| !!! | TTCTGTTACTTTTTACCAAA+TGG | + | chr3_1:89592817-89592836 | Msa0385890:three_prime_UTR | 25.0% |
| ! | GAAATAAGATTATAAGAACC+TGG | - | chr3_1:89592090-89592109 | None:intergenic | 25.0% |
| ! | TTATGATGATTATTCACCTT+AGG | - | chr3_1:89592482-89592501 | None:intergenic | 25.0% |
| ! | TTTGATAAATCTGTTACTGT+TGG | + | chr3_1:89592671-89592690 | Msa0385890:CDS | 25.0% |
| ! | AGGAAAAATTTCGTACTATT+AGG | + | chr3_1:89592724-89592743 | Msa0385890:CDS | 25.0% |
| ! | GGAAAAATTTCGTACTATTA+GGG | + | chr3_1:89592725-89592744 | Msa0385890:CDS | 25.0% |
| !!! | TTCTGTTACTTTTTACCAAA+TGG | + | chr3_1:89592817-89592836 | Msa0385890:three_prime_UTR | 25.0% |
| ATGTTGTGGATTTCAAAAAG+TGG | - | chr3_1:89591820-89591839 | None:intergenic | 30.0% | |
| ATAAGATTATAAGAACCTGG+TGG | - | chr3_1:89592087-89592106 | None:intergenic | 30.0% | |
| CCACAAACAAAAAATGTCAA+TGG | - | chr3_1:89592160-89592179 | None:intergenic | 30.0% | |
| !!! | CCATTGACATTTTTTGTTTG+TGG | + | chr3_1:89592157-89592176 | Msa0385890:intron | 30.0% |
| GTGGATTTGAAAATTGAAAC+AGG | + | chr3_1:89592176-89592195 | Msa0385890:intron | 30.0% | |
| TAAATTCAGAAGCAATTGTG+CGG | - | chr3_1:89592256-89592275 | None:intergenic | 30.0% | |
| CACAATTGCTTCTGAATTTA+GGG | + | chr3_1:89592256-89592275 | Msa0385890:CDS | 30.0% | |
| AGAATTTGGAAAATCAGATC+CGG | + | chr3_1:89592301-89592320 | Msa0385890:CDS | 30.0% | |
| TTGGTACCATTAATTTCTTC+CGG | - | chr3_1:89592323-89592342 | None:intergenic | 30.0% | |
| ! | AGATTTAGGGTTACAAGAAT+TGG | - | chr3_1:89592342-89592361 | None:intergenic | 30.0% |
| AATTCTTGTAACCCTAAATC+TGG | + | chr3_1:89592341-89592360 | Msa0385890:CDS | 30.0% | |
| TACTAGTATTAAGCAACCTA+AGG | + | chr3_1:89592463-89592482 | Msa0385890:CDS | 30.0% | |
| AAGAATACTGCAAGAAAACT+TGG | + | chr3_1:89592533-89592552 | Msa0385890:CDS | 30.0% | |
| ATGTTGTGGATTTCAAAAAG+TGG | - | chr3_1:89591820-89591839 | None:intergenic | 30.0% | |
| ATAAGATTATAAGAACCTGG+TGG | - | chr3_1:89592087-89592106 | None:intergenic | 30.0% | |
| CCACAAACAAAAAATGTCAA+TGG | - | chr3_1:89592160-89592179 | None:intergenic | 30.0% | |
| !!! | CCATTGACATTTTTTGTTTG+TGG | + | chr3_1:89592157-89592176 | Msa0385890:intron | 30.0% |
| GTGGATTTGAAAATTGAAAC+AGG | + | chr3_1:89592176-89592195 | Msa0385890:intron | 30.0% | |
| TAAATTCAGAAGCAATTGTG+CGG | - | chr3_1:89592256-89592275 | None:intergenic | 30.0% | |
| CACAATTGCTTCTGAATTTA+GGG | + | chr3_1:89592256-89592275 | Msa0385890:CDS | 30.0% | |
| AGAATTTGGAAAATCAGATC+CGG | + | chr3_1:89592301-89592320 | Msa0385890:CDS | 30.0% | |
| TTGGTACCATTAATTTCTTC+CGG | - | chr3_1:89592323-89592342 | None:intergenic | 30.0% | |
| ! | AGATTTAGGGTTACAAGAAT+TGG | - | chr3_1:89592342-89592361 | None:intergenic | 30.0% |
| AATTCTTGTAACCCTAAATC+TGG | + | chr3_1:89592341-89592360 | Msa0385890:CDS | 30.0% | |
| TACTAGTATTAAGCAACCTA+AGG | + | chr3_1:89592463-89592482 | Msa0385890:CDS | 30.0% | |
| AAGAATACTGCAAGAAAACT+TGG | + | chr3_1:89592533-89592552 | Msa0385890:CDS | 30.0% | |
| ! | CGTCTATAACGGTCATATTT+TGG | - | chr3_1:89591855-89591874 | None:intergenic | 35.0% |
| !! | ATAGAAGAGAGCGTCTATAA+CGG | - | chr3_1:89591866-89591885 | None:intergenic | 35.0% |
| !! | TGCGGGTTTTTATTTGATTG+TGG | - | chr3_1:89591923-89591942 | None:intergenic | 35.0% |
| GCACAATTGCTTCTGAATTT+AGG | + | chr3_1:89592255-89592274 | Msa0385890:CDS | 35.0% | |
| ! | CTGAATTTAGGGCTTTATCA+AGG | + | chr3_1:89592267-89592286 | Msa0385890:CDS | 35.0% |
| ! | ATTTAGGGCTTTATCAAGGA+TGG | + | chr3_1:89592271-89592290 | Msa0385890:CDS | 35.0% |
| TCAGATCCGGAAGAAATTAA+TGG | + | chr3_1:89592314-89592333 | Msa0385890:CDS | 35.0% | |
| GAAACAGAACACCAGATTTA+GGG | - | chr3_1:89592355-89592374 | None:intergenic | 35.0% | |
| TGAAACAGAACACCAGATTT+AGG | - | chr3_1:89592356-89592375 | None:intergenic | 35.0% | |
| ATGATGAGTATTCTGCAAGA+AGG | + | chr3_1:89592390-89592409 | Msa0385890:CDS | 35.0% | |
| ATGCTTCTAAGCATATACCT+TGG | - | chr3_1:89592611-89592630 | None:intergenic | 35.0% | |
| ! | TATGCTTAGAAGCATGACTA+AGG | + | chr3_1:89592616-89592635 | Msa0385890:CDS | 35.0% |
| ! | CGTCTATAACGGTCATATTT+TGG | - | chr3_1:89591855-89591874 | None:intergenic | 35.0% |
| !! | ATAGAAGAGAGCGTCTATAA+CGG | - | chr3_1:89591866-89591885 | None:intergenic | 35.0% |
| !! | TGCGGGTTTTTATTTGATTG+TGG | - | chr3_1:89591923-89591942 | None:intergenic | 35.0% |
| GCACAATTGCTTCTGAATTT+AGG | + | chr3_1:89592255-89592274 | Msa0385890:CDS | 35.0% | |
| ! | CTGAATTTAGGGCTTTATCA+AGG | + | chr3_1:89592267-89592286 | Msa0385890:CDS | 35.0% |
| ! | ATTTAGGGCTTTATCAAGGA+TGG | + | chr3_1:89592271-89592290 | Msa0385890:CDS | 35.0% |
| TCAGATCCGGAAGAAATTAA+TGG | + | chr3_1:89592314-89592333 | Msa0385890:CDS | 35.0% | |
| GAAACAGAACACCAGATTTA+GGG | - | chr3_1:89592355-89592374 | None:intergenic | 35.0% | |
| TGAAACAGAACACCAGATTT+AGG | - | chr3_1:89592356-89592375 | None:intergenic | 35.0% | |
| ATGATGAGTATTCTGCAAGA+AGG | + | chr3_1:89592390-89592409 | Msa0385890:CDS | 35.0% | |
| ATGCTTCTAAGCATATACCT+TGG | - | chr3_1:89592611-89592630 | None:intergenic | 35.0% | |
| ! | TATGCTTAGAAGCATGACTA+AGG | + | chr3_1:89592616-89592635 | Msa0385890:CDS | 35.0% |
| !! | CGGTCATATTTTGGATCCAA+CGG | - | chr3_1:89591846-89591865 | None:intergenic | 40.0% |
| GCAATGTGTGACTGAAAATG+CGG | - | chr3_1:89591946-89591965 | None:intergenic | 40.0% | |
| CAGGTTCTTTAACCAAGTCT+CGG | + | chr3_1:89592195-89592214 | Msa0385890:intron | 40.0% | |
| TTTAACCAAGTCTCGGAAAC+TGG | + | chr3_1:89592202-89592221 | Msa0385890:CDS | 40.0% | |
| AGGATGGTTCGTGAAGAATT+TGG | + | chr3_1:89592287-89592306 | Msa0385890:CDS | 40.0% | |
| GAGAGGTTGAAGAGAAAGAA+AGG | + | chr3_1:89592416-89592435 | Msa0385890:CDS | 40.0% | |
| GAAGAGAAAGAAAGGAGTCA+CGG | + | chr3_1:89592424-89592443 | Msa0385890:CDS | 40.0% | |
| !! | CTTGGTGTTACTGTTGAATC+TGG | + | chr3_1:89592506-89592525 | Msa0385890:CDS | 40.0% |
| AATAAGAAACCTCCTCTAGC+TGG | + | chr3_1:89592641-89592660 | Msa0385890:CDS | 40.0% | |
| TCAAATCTTGAACCAGCTAG+AGG | - | chr3_1:89592656-89592675 | None:intergenic | 40.0% | |
| ! | ACTGTTGGTGAGAAGAAAGT+TGG | + | chr3_1:89592686-89592705 | Msa0385890:CDS | 40.0% |
| !! | CGGTCATATTTTGGATCCAA+CGG | - | chr3_1:89591846-89591865 | None:intergenic | 40.0% |
| GCAATGTGTGACTGAAAATG+CGG | - | chr3_1:89591946-89591965 | None:intergenic | 40.0% | |
| CAGGTTCTTTAACCAAGTCT+CGG | + | chr3_1:89592195-89592214 | Msa0385890:intron | 40.0% | |
| TTTAACCAAGTCTCGGAAAC+TGG | + | chr3_1:89592202-89592221 | Msa0385890:CDS | 40.0% | |
| AGGATGGTTCGTGAAGAATT+TGG | + | chr3_1:89592287-89592306 | Msa0385890:CDS | 40.0% | |
| GAGAGGTTGAAGAGAAAGAA+AGG | + | chr3_1:89592416-89592435 | Msa0385890:CDS | 40.0% | |
| GAAGAGAAAGAAAGGAGTCA+CGG | + | chr3_1:89592424-89592443 | Msa0385890:CDS | 40.0% | |
| !! | CTTGGTGTTACTGTTGAATC+TGG | + | chr3_1:89592506-89592525 | Msa0385890:CDS | 40.0% |
| AATAAGAAACCTCCTCTAGC+TGG | + | chr3_1:89592641-89592660 | Msa0385890:CDS | 40.0% | |
| TCAAATCTTGAACCAGCTAG+AGG | - | chr3_1:89592656-89592675 | None:intergenic | 40.0% | |
| ! | ACTGTTGGTGAGAAGAAAGT+TGG | + | chr3_1:89592686-89592705 | Msa0385890:CDS | 40.0% |
| AAATCCACAACATCAGCCGT+TGG | + | chr3_1:89591827-89591846 | Msa0385890:five_prime_UTR | 45.0% | |
| ATTGTGGCAAAGAGTAGCGA+GGG | - | chr3_1:89591907-89591926 | None:intergenic | 45.0% | |
| TTGAACCAGTTTCCGAGACT+TGG | - | chr3_1:89592210-89592229 | None:intergenic | 45.0% | |
| GAAGCAATTGTGCGGTATTC+AGG | - | chr3_1:89592248-89592267 | None:intergenic | 45.0% | |
| TCTGGTGTTCTGTTTCAGAG+AGG | + | chr3_1:89592359-89592378 | Msa0385890:CDS | 45.0% | |
| ATTCTGCAAGAAGGAACGAG+AGG | + | chr3_1:89592399-89592418 | Msa0385890:CDS | 45.0% | |
| ! | TTCTGCTGCTTATTCTGCTG+AGG | + | chr3_1:89592574-89592593 | Msa0385890:CDS | 45.0% |
| CTGAGGTTAGTGAAACTCCA+AGG | + | chr3_1:89592591-89592610 | Msa0385890:CDS | 45.0% | |
| AATCTTGAACCAGCTAGAGG+AGG | - | chr3_1:89592653-89592672 | None:intergenic | 45.0% | |
| AAATCCACAACATCAGCCGT+TGG | + | chr3_1:89591827-89591846 | Msa0385890:five_prime_UTR | 45.0% | |
| ATTGTGGCAAAGAGTAGCGA+GGG | - | chr3_1:89591907-89591926 | None:intergenic | 45.0% | |
| TTGAACCAGTTTCCGAGACT+TGG | - | chr3_1:89592210-89592229 | None:intergenic | 45.0% | |
| GAAGCAATTGTGCGGTATTC+AGG | - | chr3_1:89592248-89592267 | None:intergenic | 45.0% | |
| TCTGGTGTTCTGTTTCAGAG+AGG | + | chr3_1:89592359-89592378 | Msa0385890:CDS | 45.0% | |
| ATTCTGCAAGAAGGAACGAG+AGG | + | chr3_1:89592399-89592418 | Msa0385890:CDS | 45.0% | |
| ! | TTCTGCTGCTTATTCTGCTG+AGG | + | chr3_1:89592574-89592593 | Msa0385890:CDS | 45.0% |
| CTGAGGTTAGTGAAACTCCA+AGG | + | chr3_1:89592591-89592610 | Msa0385890:CDS | 45.0% | |
| AATCTTGAACCAGCTAGAGG+AGG | - | chr3_1:89592653-89592672 | None:intergenic | 45.0% | |
| GTAGCGAGGGTTTGAGTCAA+AGG | - | chr3_1:89591894-89591913 | None:intergenic | 50.0% | |
| GATTGTGGCAAAGAGTAGCG+AGG | - | chr3_1:89591908-89591927 | None:intergenic | 50.0% | |
| TGTGACTGAAAATGCGGTGC+GGG | - | chr3_1:89591940-89591959 | None:intergenic | 50.0% | |
| GTGTGACTGAAAATGCGGTG+CGG | - | chr3_1:89591941-89591960 | None:intergenic | 50.0% | |
| GAAGACGCATCGGAGACTTA+GGG | - | chr3_1:89592026-89592045 | None:intergenic | 50.0% | |
| ! | GTTCGAGTTCGAAGACGCAT+CGG | - | chr3_1:89592036-89592055 | None:intergenic | 50.0% |
| AAGAGAGGGGGAGTCAAGAA+CGG | - | chr3_1:89592058-89592077 | None:intergenic | 50.0% | |
| TGGTGGAGTTTGAAGAGAGG+GGG | - | chr3_1:89592070-89592089 | None:intergenic | 50.0% | |
| CTGGTGGAGTTTGAAGAGAG+GGG | - | chr3_1:89592071-89592090 | None:intergenic | 50.0% | |
| CCTGGTGGAGTTTGAAGAGA+GGG | - | chr3_1:89592072-89592091 | None:intergenic | 50.0% | |
| ACCTGGTGGAGTTTGAAGAG+AGG | - | chr3_1:89592073-89592092 | None:intergenic | 50.0% | |
| CGGTATTCAGGTCGTAGTTC+AGG | - | chr3_1:89592236-89592255 | None:intergenic | 50.0% | |
| GAGAAAGAAAGGAGTCACGG+TGG | + | chr3_1:89592427-89592446 | Msa0385890:CDS | 50.0% | |
| !! | GTTGGAGCATCGAGAAGAGT+AGG | + | chr3_1:89592704-89592723 | Msa0385890:CDS | 50.0% |
| GTAGCGAGGGTTTGAGTCAA+AGG | - | chr3_1:89591894-89591913 | None:intergenic | 50.0% | |
| GATTGTGGCAAAGAGTAGCG+AGG | - | chr3_1:89591908-89591927 | None:intergenic | 50.0% | |
| TGTGACTGAAAATGCGGTGC+GGG | - | chr3_1:89591940-89591959 | None:intergenic | 50.0% | |
| GTGTGACTGAAAATGCGGTG+CGG | - | chr3_1:89591941-89591960 | None:intergenic | 50.0% | |
| GAAGACGCATCGGAGACTTA+GGG | - | chr3_1:89592026-89592045 | None:intergenic | 50.0% | |
| ! | GTTCGAGTTCGAAGACGCAT+CGG | - | chr3_1:89592036-89592055 | None:intergenic | 50.0% |
| AAGAGAGGGGGAGTCAAGAA+CGG | - | chr3_1:89592058-89592077 | None:intergenic | 50.0% | |
| TGGTGGAGTTTGAAGAGAGG+GGG | - | chr3_1:89592070-89592089 | None:intergenic | 50.0% | |
| CTGGTGGAGTTTGAAGAGAG+GGG | - | chr3_1:89592071-89592090 | None:intergenic | 50.0% | |
| CCTGGTGGAGTTTGAAGAGA+GGG | - | chr3_1:89592072-89592091 | None:intergenic | 50.0% | |
| ACCTGGTGGAGTTTGAAGAG+AGG | - | chr3_1:89592073-89592092 | None:intergenic | 50.0% | |
| CGGTATTCAGGTCGTAGTTC+AGG | - | chr3_1:89592236-89592255 | None:intergenic | 50.0% | |
| GAGAAAGAAAGGAGTCACGG+TGG | + | chr3_1:89592427-89592446 | Msa0385890:CDS | 50.0% | |
| !! | GTTGGAGCATCGAGAAGAGT+AGG | + | chr3_1:89592704-89592723 | Msa0385890:CDS | 50.0% |
| GGATCCAACGGCTGATGTTG+TGG | - | chr3_1:89591834-89591853 | None:intergenic | 55.0% | |
| TGGTCGGAGGTGGGATTTCA+TGG | - | chr3_1:89591992-89592011 | None:intergenic | 55.0% | |
| CGCATCGGAGACTTAGGGAT+CGG | - | chr3_1:89592021-89592040 | None:intergenic | 55.0% | |
| CGAAGACGCATCGGAGACTT+AGG | - | chr3_1:89592027-89592046 | None:intergenic | 55.0% | |
| CCCTCTCTTCAAACTCCACC+AGG | + | chr3_1:89592069-89592088 | Msa0385890:CDS | 55.0% | |
| GGATCCAACGGCTGATGTTG+TGG | - | chr3_1:89591834-89591853 | None:intergenic | 55.0% | |
| TGGTCGGAGGTGGGATTTCA+TGG | - | chr3_1:89591992-89592011 | None:intergenic | 55.0% | |
| CGCATCGGAGACTTAGGGAT+CGG | - | chr3_1:89592021-89592040 | None:intergenic | 55.0% | |
| CGAAGACGCATCGGAGACTT+AGG | - | chr3_1:89592027-89592046 | None:intergenic | 55.0% | |
| CCCTCTCTTCAAACTCCACC+AGG | + | chr3_1:89592069-89592088 | Msa0385890:CDS | 55.0% | |
| GGAGACTTAGGGATCGGTCG+CGG | - | chr3_1:89592015-89592034 | None:intergenic | 60.0% | |
| GGAGACTTAGGGATCGGTCG+CGG | - | chr3_1:89592015-89592034 | None:intergenic | 60.0% | |
| TAGGGATCGGTCGCGGTGGT+CGG | - | chr3_1:89592008-89592027 | None:intergenic | 65.0% | |
| GACTTAGGGATCGGTCGCGG+TGG | - | chr3_1:89592012-89592031 | None:intergenic | 65.0% | |
| TAGGGATCGGTCGCGGTGGT+CGG | - | chr3_1:89592008-89592027 | None:intergenic | 65.0% | |
| GACTTAGGGATCGGTCGCGG+TGG | - | chr3_1:89592012-89592031 | None:intergenic | 65.0% | |
| CGGTCGCGGTGGTCGGAGGT+GGG | - | chr3_1:89592001-89592020 | None:intergenic | 75.0% | |
| TCGGTCGCGGTGGTCGGAGG+TGG | - | chr3_1:89592002-89592021 | None:intergenic | 75.0% | |
| GGATCGGTCGCGGTGGTCGG+AGG | - | chr3_1:89592005-89592024 | None:intergenic | 75.0% | |
| CGGTCGCGGTGGTCGGAGGT+GGG | - | chr3_1:89592001-89592020 | None:intergenic | 75.0% | |
| TCGGTCGCGGTGGTCGGAGG+TGG | - | chr3_1:89592002-89592021 | None:intergenic | 75.0% | |
| GGATCGGTCGCGGTGGTCGG+AGG | - | chr3_1:89592005-89592024 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 89591801 | 89592877 | 89591801 | ID=Msa0385890;Name=Msa0385890 |
| chr3_1 | mRNA | 89591801 | 89592877 | 89591801 | ID=Msa0385890-mRNA-1;Parent=Msa0385890;Name=Msa0385890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=169|1|1|1|1|1|2|132|222 |
| chr3_1 | exon | 89591801 | 89592090 | 89591801 | ID=Msa0385890-mRNA-1:exon:24457;Parent=Msa0385890-mRNA-1 |
| chr3_1 | exon | 89592198 | 89592877 | 89592198 | ID=Msa0385890-mRNA-1:exon:24458;Parent=Msa0385890-mRNA-1 |
| chr3_1 | five_prime_UTR | 89591801 | 89591969 | 89591801 | ID=Msa0385890-mRNA-1:five_prime_utr;Parent=Msa0385890-mRNA-1 |
| chr3_1 | CDS | 89591970 | 89592090 | 89591970 | ID=Msa0385890-mRNA-1:cds;Parent=Msa0385890-mRNA-1 |
| chr3_1 | CDS | 89592198 | 89592745 | 89592198 | ID=Msa0385890-mRNA-1:cds;Parent=Msa0385890-mRNA-1 |
| chr3_1 | three_prime_UTR | 89592746 | 89592877 | 89592746 | ID=Msa0385890-mRNA-1:three_prime_utr;Parent=Msa0385890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
