AlfalfaGEDB | Msa0870630

M. sativa cultivar zhongmu-4 / Msa0870630

KEGG: K01099
GO: GO:0003674 GO:0003824 GO:0004439 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0030258 GO:0034485 GO:0034593 GO:0034594 GO:0034595 GO:0042578 GO:0044237 GO:0044238 GO:0044255 GO:0046486 GO:0046488 GO:0046839 GO:0046856 GO:0052866 GO:0071704 GO:0106019
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0870630	XP_039683140.1	97.333	225	3	1	1	222	138	362	8.11e-159	457

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0870630	sp\|Q8GTS0\|IP5P4_ARATH	51.442	208	90	5	20	222	272	473	7.98e-63	207

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0870630	G7KJZ3	97.333	225	3	1	1	222	138	362	3.87e-159	457

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006700	Msa0870630	0.831459	1.649506e-55	-8.615850e-47
Msa0008850	Msa0870630	0.837409	5.288458e-57	-8.615850e-47
Msa0011720	Msa0870630	0.831262	1.843773e-55	-8.615850e-47
Msa0012440	Msa0870630	0.810196	1.300003e-50	-8.615850e-47
Msa0017120	Msa0870630	0.823668	1.223845e-53	-8.615850e-47
Msa0020630	Msa0870630	0.837968	3.799749e-57	-8.615850e-47
Msa0027540	Msa0870630	0.830562	2.738490e-55	-8.615850e-47
Msa0030000	Msa0870630	0.814214	1.726340e-51	-8.615850e-47
Msa0030030	Msa0870630	0.802689	4.978733e-49	-8.615850e-47
Msa0030590	Msa0870630	0.820856	5.497955e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0870630	MtrunA17_Chr6g0452181	97.333	225	3	1	1	222	138	362	7.46e-163	457
Msa0870630	MtrunA17_Chr8g0355021	47.768	224	109	3	3	222	204	423	6.45e-67	213
Msa0870630	MtrunA17_Chr1g0185281	50.000	206	94	4	21	222	283	483	5.12e-63	205
Msa0870630	MtrunA17_Chr5g0394901	49.524	210	97	4	17	222	345	549	3.90e-62	204
Msa0870630	MtrunA17_Chr1g0205121	48.165	218	96	5	17	222	298	510	3.25e-61	201
Msa0870630	MtrunA17_Chr7g0260081	50.246	203	92	4	24	222	286	483	2.24e-60	198
Msa0870630	MtrunA17_Chr8g0382571	49.510	204	94	4	23	222	210	408	9.89e-60	194
Msa0870630	MtrunA17_Chr4g0054941	48.241	199	97	4	25	222	309	502	3.53e-57	190
Msa0870630	MtrunA17_Chr5g0400311	44.954	218	112	6	6	222	349	559	4.34e-57	191
Msa0870630	MtrunA17_Chr4g0054951	47.087	206	103	4	18	222	302	502	6.04e-57	189

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0870630	AT3G63240.2	51.442	208	90	5	20	222	272	473	8.11e-64	207
Msa0870630	AT3G63240.1	51.442	208	90	5	20	222	272	473	8.11e-64	207
Msa0870630	AT2G32010.2	50.732	205	92	4	22	222	322	521	2.00e-63	207
Msa0870630	AT2G32010.1	50.732	205	92	4	22	222	322	521	2.00e-63	207
Msa0870630	AT2G32010.4	50.732	205	92	4	22	222	322	521	2.00e-63	207
Msa0870630	AT2G32010.3	50.732	205	92	4	22	222	322	521	2.00e-63	207
Msa0870630	AT5G65090.2	50.746	201	90	4	26	222	199	394	6.59e-63	203
Msa0870630	AT5G65090.3	50.746	201	90	4	26	222	262	457	1.89e-62	203
Msa0870630	AT5G65090.1	50.746	201	90	4	26	222	262	457	1.89e-62	203
Msa0870630	AT1G05470.2	50.244	205	93	4	22	222	345	544	2.81e-62	204

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Find 69 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAAAGAACACCAGCA+TGG	0.661082	6_1:-5179147	Msa0870630:intron
AAGATGAGTACTTATATGTT+GGG	0.424011	6_1:+5179218	None:intergenic
AAGTGGTTACTATACCATGC+TGG	0.634633	6_1:+5179133	None:intergenic
AATAAGAAAGCAAGATTGGA+AGG	0.529530	6_1:-5179326	Msa0870630:CDS
ACAAATTGGAACAATCTTAT+AGG	0.311233	6_1:-5181498	Msa0870630:five_prime_UTR
ACAACAAATTTGAGTTCCCA+TGG	0.529948	6_1:-5181464	Msa0870630:five_prime_UTR
ACAATTTAAAATTATTACAT+AGG	0.468058	6_1:-5181692	Msa0870630:five_prime_UTR
ACCACAATAGATATTGCTAG+TGG	0.647730	6_1:+5179195	None:intergenic
ACTAGCAATATCTATTGTGG+TGG	0.637512	6_1:-5179193	Msa0870630:CDS
ACTTGAAAGACCATCTAGCT+AGG	0.579325	6_1:-5179354	Msa0870630:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAATTAGAGTGAGGAATGAA+AGG	-	chr6_1:5177848-5177867	Msa0870630:three_prime_UTR	30.0%
TTAACATAGGTGTTAACCAT+GGG	+	chr6_1:5178004-5178023	None:intergenic	30.0%
TTTAACATAGGTGTTAACCA+TGG	+	chr6_1:5178005-5178024	None:intergenic	30.0%
CAACAAAAACAAGTACAAGA+TGG	-	chr6_1:5178079-5178098	Msa0870630:intron	30.0%
GATGGTAGCTAGTAAAAAAA+TGG	-	chr6_1:5178097-5178116	Msa0870630:intron	30.0%
GTAGCTAGTAAAAAAATGGT+TGG	-	chr6_1:5178101-5178120	Msa0870630:intron	30.0%
TTGGTTAAAAGAACAAGTGT+TGG	-	chr6_1:5178139-5178158	Msa0870630:intron	30.0%
ATGGGATATTTAGGAAACAA+AGG	-	chr6_1:5178212-5178231	Msa0870630:intron	30.0%
TGCAAAAGGAGATAAACTTA+GGG	+	chr6_1:5178754-5178773	None:intergenic	30.0%
GTATCACAATCTTGTGATAT+TGG	+	chr6_1:5179026-5179045	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	5177645	5181826	5177645	ID=Msa0870630;Name=Msa0870630
chr6_1	mRNA	5177645	5181826	5177645	ID=Msa0870630-mRNA-1;Parent=Msa0870630;Name=Msa0870630-mRNA-1;_AED=0.24;_eAED=0.24;_QI=372\|0.5\|1\|1\|0.5\|0.66\|3\|315\|223
chr6_1	exon	5177645	5177966	5177645	ID=Msa0870630-mRNA-1:exon:1656;Parent=Msa0870630-mRNA-1
chr6_1	exon	5179148	5179414	5179148	ID=Msa0870630-mRNA-1:exon:1655;Parent=Msa0870630-mRNA-1
chr6_1	exon	5181057	5181826	5181057	ID=Msa0870630-mRNA-1:exon:1654;Parent=Msa0870630-mRNA-1
chr6_1	five_prime_UTR	5181455	5181826	5181455	ID=Msa0870630-mRNA-1:five_prime_utr;Parent=Msa0870630-mRNA-1
chr6_1	CDS	5181057	5181454	5181057	ID=Msa0870630-mRNA-1:cds;Parent=Msa0870630-mRNA-1
chr6_1	CDS	5179148	5179414	5179148	ID=Msa0870630-mRNA-1:cds;Parent=Msa0870630-mRNA-1
chr6_1	CDS	5177960	5177966	5177960	ID=Msa0870630-mRNA-1:cds;Parent=Msa0870630-mRNA-1
chr6_1	three_prime_UTR	5177645	5177959	5177645	ID=Msa0870630-mRNA-1:three_prime_utr;Parent=Msa0870630-mRNA-1

Gene Sequence

>Msa0870630

ATGTTAAATTCATCCTTGCCAAATGATCAAGAAAATTATCAAAACATTGGAGGAAGTGGAACCAACAAAAACAAGTACAAGATGGTAGCTAGTAAAAAAATGGTTGGAGTATTCATAAGTGTTTGGTTAAAAGAACAAGTGTTGGAAAAATATTGTGTTTCAAATGTGAGAGTTTGTTCAGTTGCATGTGGTGTTATGGGATATTTAGGAAACAAAGGTTGTGTGGGAGTTAGTATGTTGATTGAAGGAACAAGTTTTTGTTTTGTTGTAGCACATTTAGCTTCTGGGGAAAAGAAAGGTGATGAAGGTAGAAGGAATCATCAAGTTGAAGAAATTTTTAGGAGAACATCTTTTCCTAGAAACACAAAACATCATCCTCTAACAATCTTAGGCCATGATCGCATATTTTGGTTTGGGGATCTCAACTATAGACTATACTTGAAAGACCATCTAGCTAGGCATCTAATAAGAAAGCAAGATTGGAAGGCTTTGCAAGAGTTTGATCAACTTCAAAAAGAGTTAGCAGAAGGTGGAGTTTTTGAGGGTTGGAAAGAAGGTAACGTAGAATTTGCCCCAACATATAAGTACTCATCTTCCACTAGCAATATCTATTGTGGTGGTGGCCTTCCAACTAGATCAGGAGAAAAGCAAAGAACACCAGCATGGAGGTGA

Protein sequence

>Msa0870630

MLNSSLPNDQENYQNIGGSGTNKNKYKMVASKKMVGVFISVWLKEQVLEKYCVSNVRVCSVACGVMGYLGNKGCVGVSMLIEGTSFCFVVAHLASGEKKGDEGRRNHQVEEIFRRTSFPRNTKHHPLTILGHDRIFWFGDLNYRLYLKDHLARHLIRKQDWKALQEFDQLQKELAEGGVFEGWKEGNVEFAPTYKYSSSTSNIYCGGGLPTRSGEKQRTPAWR*