Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219690 | XP_013463686.1 | 61.972 | 142 | 3 | 1 | 1 | 91 | 1 | 142 | 1.61e-47 | 158 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219690 | A0A072V7V5 | 61.972 | 142 | 3 | 1 | 1 | 91 | 1 | 142 | 7.71e-48 | 158 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043980 | Msa0219690 | 0.810821 | 9.528222e-51 | -8.615850e-47 |
| Msa0054480 | Msa0219690 | 0.819533 | 1.104984e-52 | -8.615850e-47 |
| Msa0112770 | Msa0219690 | 0.821079 | 4.884950e-53 | -8.615850e-47 |
| Msa0205230 | Msa0219690 | 0.809937 | 1.478200e-50 | -8.615850e-47 |
| Msa0219690 | Msa0247550 | 0.814467 | 1.517806e-51 | -8.615850e-47 |
| Msa0219690 | Msa0309750 | 0.801496 | 8.761698e-49 | -8.615850e-47 |
| Msa0219690 | Msa0344540 | 0.800796 | 1.218372e-48 | -8.615850e-47 |
| Msa0219690 | Msa0366890 | 0.811285 | 7.557922e-51 | -8.615850e-47 |
| Msa0219690 | Msa0376310 | 0.800736 | 1.253269e-48 | -8.615850e-47 |
| Msa0219690 | Msa0388950 | 0.806691 | 7.273415e-50 | -8.615850e-47 |
| Msa0219690 | Msa0481530 | 0.806090 | 9.740222e-50 | -8.615850e-47 |
| Msa0219690 | Msa0569220 | 0.821792 | 3.344104e-53 | -8.615850e-47 |
| Msa0219690 | Msa0585560 | 0.806937 | 6.452754e-50 | -8.615850e-47 |
| Msa0219690 | Msa0592440 | 0.801155 | 1.028923e-48 | -8.615850e-47 |
| Msa0219690 | Msa0607050 | 0.813734 | 2.202642e-51 | -8.615850e-47 |
| Msa0219690 | Msa0647500 | 0.805317 | 1.414887e-49 | -8.615850e-47 |
| Msa0219690 | Msa0663390 | 0.810502 | 1.116695e-50 | -8.615850e-47 |
| Msa0219690 | Msa0690150 | 0.802139 | 6.464570e-49 | -8.615850e-47 |
| Msa0219690 | Msa0711780 | 0.809147 | 2.184087e-50 | -8.615850e-47 |
| Msa0219690 | Msa0794670 | 0.819293 | 1.253418e-52 | -8.615850e-47 |
| Msa0219690 | Msa0902760 | 0.809577 | 1.766819e-50 | -8.615850e-47 |
| Msa0219690 | Msa0987370 | 0.817920 | 2.566773e-52 | -8.615850e-47 |
| Msa0219690 | Msa1013400 | 0.805385 | 1.369705e-49 | -8.615850e-47 |
| Msa0219690 | Msa1093530 | 0.810891 | 9.199019e-51 | -8.615850e-47 |
| Msa0219690 | Msa1160590 | 0.801728 | 7.849976e-49 | -8.615850e-47 |
| Msa0219690 | Msa1209760 | 0.803621 | 3.194632e-49 | -8.615850e-47 |
| Msa0219690 | Msa1217470 | 0.822171 | 2.732747e-53 | -8.615850e-47 |
| Msa0219690 | Msa1305660 | 0.804609 | 1.989461e-49 | -8.615850e-47 |
| Msa0219690 | Msa1313140 | 0.808249 | 3.398646e-50 | -8.615850e-47 |
| Msa0219690 | Msa1423870 | 0.805996 | 1.018999e-49 | -8.615850e-47 |
| Msa0219690 | Msa1425260 | 0.801554 | 8.526259e-49 | -8.615850e-47 |
| Msa0219690 | Msa1460830 | 0.803458 | 3.452595e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219690 | MtrunA17_Chr2g0302621 | 61.972 | 142 | 3 | 1 | 1 | 91 | 1 | 142 | 1.48e-51 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0219690 | AT1G48170.1 | 35.714 | 112 | 21 | 1 | 25 | 85 | 34 | 145 | 5.68e-17 | 71.2 |
Find 28 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTACCATGATTTCAAAATT+AGG | 0.247882 | 2_1:+67474620 | None:intergenic |
| GTTGAAGAAGTTAGGGTTTA+GGG | 0.251096 | 2_1:-67477291 | Msa0219690:five_prime_UTR |
| CAATATGTCCTAAGATTTAC+TGG | 0.288334 | 2_1:+67474523 | None:intergenic |
| AAAGATTATCCTTCCAATCT+TGG | 0.292195 | 2_1:+67474703 | None:intergenic |
| TTGAGCTGGTTGAAGAAGTT+AGG | 0.318799 | 2_1:-67477299 | Msa0219690:five_prime_UTR |
| TTTGAAATCATGGTAGCTTT+TGG | 0.331413 | 2_1:-67474614 | Msa0219690:three_prime_UTR |
| TCAATGAATTCTGAAGAATT+AGG | 0.335842 | 2_1:-67477267 | Msa0219690:CDS |
| GGTTGAAGAAGTTAGGGTTT+AGG | 0.342428 | 2_1:-67477292 | Msa0219690:five_prime_UTR |
| CAAAATTAGGTAACGACATT+GGG | 0.343216 | 2_1:+67474633 | None:intergenic |
| AAGATCAACCAGTAAATCTT+AGG | 0.348015 | 2_1:-67474531 | Msa0219690:three_prime_UTR |
| GATTATTCGCTTTCCCAAAC+AGG | 0.366269 | 2_1:-67477139 | Msa0219690:intron |
| GAAAGCGAATAATCTGAAAA+TGG | 0.376727 | 2_1:+67477148 | None:intergenic |
| AAGGATAATCTTTGTAGCAT+TGG | 0.434566 | 2_1:-67474693 | Msa0219690:exon |
| ATTCTGAAGAATTAGGAAAA+GGG | 0.436983 | 2_1:-67477260 | Msa0219690:CDS |
| GGGCTACACCAAGCCAAGAT+TGG | 0.437285 | 2_1:-67474716 | Msa0219690:CDS |
| AATTCTGAAGAATTAGGAAA+AGG | 0.448685 | 2_1:-67477261 | Msa0219690:CDS |
| TGAGCTGGTTGAAGAAGTTA+GGG | 0.460563 | 2_1:-67477298 | Msa0219690:five_prime_UTR |
| TCAAAATTAGGTAACGACAT+TGG | 0.471705 | 2_1:+67474632 | None:intergenic |
| TTATCCTTCCAATCTTGGCT+TGG | 0.480560 | 2_1:+67474708 | None:intergenic |
| ATCTTTGTAGCATTGGCTGA+AGG | 0.493123 | 2_1:-67474686 | Msa0219690:three_prime_UTR |
| GACTGGTCTCAATATAATCA+TGG | 0.494309 | 2_1:-67476536 | Msa0219690:CDS |
| ACATTGGGATAATACATGTT+CGG | 0.533538 | 2_1:+67474648 | None:intergenic |
| GAAATTCGAAAAGCTTGAGC+TGG | 0.541543 | 2_1:-67477313 | Msa0219690:five_prime_UTR |
| TCTTTGTAGCATTGGCTGAA+GGG | 0.549792 | 2_1:-67474685 | Msa0219690:three_prime_UTR |
| TGGTAGCTATTTGTTTACGT+TGG | 0.565952 | 2_1:-67474594 | Msa0219690:three_prime_UTR |
| TACACCAAGCCAAGATTGGA+AGG | 0.570954 | 2_1:-67474712 | Msa0219690:CDS |
| AGAGACCGTACCTCAACCAT+AGG | 0.610302 | 2_1:+67476490 | None:intergenic |
| AGCGAATAATCTGAAAATGG+AGG | 0.624908 | 2_1:+67477151 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGAAAAATTATTCATTT+TGG | - | chr2_1:67475174-67475193 | Msa0219690:intron | 10.0% |
| !! | AAATTAAAAGATAAATATCA+TGG | + | chr2_1:67475881-67475900 | None:intergenic | 10.0% |
| !!! | TTGATTTTTAAATTCAATAT+TGG | - | chr2_1:67476940-67476959 | Msa0219690:intron | 10.0% |
| !!! | CAAAAACTCATATTTTTAAA+TGG | + | chr2_1:67474748-67474767 | None:intergenic | 15.0% |
| !!! | TTTTGATATTATTACTTCTT+TGG | - | chr2_1:67476285-67476304 | Msa0219690:intron | 15.0% |
| !!! | TTAAACTTTTATAAAGATCT+TGG | - | chr2_1:67476429-67476448 | Msa0219690:intron | 15.0% |
| !! | ACTTGTTTATTAAACAAATT+TGG | + | chr2_1:67476455-67476474 | None:intergenic | 15.0% |
| !! | ATTTGTTTAATAAACAAGTT+AGG | - | chr2_1:67476456-67476475 | Msa0219690:intron | 15.0% |
| !! | TTTGTTTAATAAACAAGTTA+GGG | - | chr2_1:67476457-67476476 | Msa0219690:intron | 15.0% |
| !! | AATTTACAAATTACATTAAC+TGG | + | chr2_1:67476813-67476832 | None:intergenic | 15.0% |
| !!! | ATACAAAAACTTATTAGTTT+GGG | - | chr2_1:67477038-67477057 | Msa0219690:intron | 15.0% |
| !!! | AAAATTATTCATTTTGGTCA+TGG | - | chr2_1:67475180-67475199 | Msa0219690:intron | 20.0% |
| !!! | AGCAAGTGAAATTTAAATTT+TGG | + | chr2_1:67475570-67475589 | None:intergenic | 20.0% |
| !! | AAAATAGAGTATAACTACTT+AGG | + | chr2_1:67476197-67476216 | None:intergenic | 20.0% |
| !! | CCTTCTATAAATTATACAAA+CGG | + | chr2_1:67476391-67476410 | None:intergenic | 20.0% |
| !!! | CAAATTTGAAAACTGTTTTA+CGG | + | chr2_1:67476530-67476549 | None:intergenic | 20.0% |
| !! | AAGAATTAACCATCAATTAT+AGG | + | chr2_1:67476783-67476802 | None:intergenic | 20.0% |
| !!! | TTTTTGTATCAGTATTTTCT+CGG | + | chr2_1:67477027-67477046 | None:intergenic | 20.0% |
| !! | GATACAAAAACTTATTAGTT+TGG | - | chr2_1:67477037-67477056 | Msa0219690:intron | 20.0% |
| !! | TCAATGAATTCTGAAGAATT+AGG | - | chr2_1:67474507-67474526 | Msa0219690:three_prime_UTR | 25.0% |
| !! | AATTCTGAAGAATTAGGAAA+AGG | - | chr2_1:67474513-67474532 | Msa0219690:three_prime_UTR | 25.0% |
| !! | ATTCTGAAGAATTAGGAAAA+GGG | - | chr2_1:67474514-67474533 | Msa0219690:three_prime_UTR | 25.0% |
| ! | AAGAAATTAGGGTTTGAAAA+GGG | + | chr2_1:67474667-67474686 | None:intergenic | 25.0% |
| ! | AAACCCTAATTTCTTCAATT+GGG | - | chr2_1:67474672-67474691 | Msa0219690:three_prime_UTR | 25.0% |
| ! | CAAACACACTAATCAATAAA+GGG | + | chr2_1:67474865-67474884 | None:intergenic | 25.0% |
| ! | TGGAGAATATTTATGAATCA+CGG | - | chr2_1:67474883-67474902 | Msa0219690:intron | 25.0% |
| ! | TTCAATGTAATTACATGTGT+TGG | - | chr2_1:67474963-67474982 | Msa0219690:intron | 25.0% |
| ! | TATTCCAAAAAATAGTCCTA+TGG | - | chr2_1:67475268-67475287 | Msa0219690:intron | 25.0% |
| ! | TCATTCTATACACATAGTTT+AGG | - | chr2_1:67475320-67475339 | Msa0219690:intron | 25.0% |
| ! | CATTCTATACACATAGTTTA+GGG | - | chr2_1:67475321-67475340 | Msa0219690:intron | 25.0% |
| ! | TATTAATAAGAAGAAGGTGA+GGG | + | chr2_1:67475434-67475453 | None:intergenic | 25.0% |
| ! | ATTGCCTATTAATAAGAAGA+AGG | + | chr2_1:67475440-67475459 | None:intergenic | 25.0% |
| !!! | GCTTATTTCTACTTAATTGA+CGG | + | chr2_1:67475746-67475765 | None:intergenic | 25.0% |
| ! | CCGTTTGTATAATTTATAGA+AGG | - | chr2_1:67476388-67476407 | Msa0219690:intron | 25.0% |
| ! | CAGGTTTAGAAAAAACTTAT+AGG | + | chr2_1:67476497-67476516 | None:intergenic | 25.0% |
| ! | AATTAACCATCAATTATAGG+TGG | + | chr2_1:67476780-67476799 | None:intergenic | 25.0% |
| ! | TTTACAACTATTCAGTAAAG+AGG | + | chr2_1:67476837-67476856 | None:intergenic | 25.0% |
| ! | GTGAATACTGATGTAAAATA+AGG | + | chr2_1:67476915-67476934 | None:intergenic | 25.0% |
| !!! | ATATTGATTTCCAACTTTCA+TGG | - | chr2_1:67476987-67477006 | Msa0219690:intron | 25.0% |
| !!! | GTTACCTAATTTTGAAATCA+TGG | - | chr2_1:67477150-67477169 | Msa0219690:CDS | 25.0% |
| GAAAGCGAATAATCTGAAAA+TGG | + | chr2_1:67474629-67474648 | None:intergenic | 30.0% | |
| AGAAATTAGGGTTTGAAAAG+GGG | + | chr2_1:67474666-67474685 | None:intergenic | 30.0% | |
| GAAGAAATTAGGGTTTGAAA+AGG | + | chr2_1:67474668-67474687 | None:intergenic | 30.0% | |
| CAAACCCTAATTTCTTCAAT+TGG | - | chr2_1:67474671-67474690 | Msa0219690:three_prime_UTR | 30.0% | |
| TGACCCAATTGAAGAAATTA+GGG | + | chr2_1:67474678-67474697 | None:intergenic | 30.0% | |
| GTGATAGATAGATATATGTG+TGG | - | chr2_1:67474767-67474786 | Msa0219690:intron | 30.0% | |
| AGATAGATATATGTGTGGAT+TGG | - | chr2_1:67474772-67474791 | Msa0219690:intron | 30.0% | |
| CCAAACACACTAATCAATAA+AGG | + | chr2_1:67474866-67474885 | None:intergenic | 30.0% | |
| ! | CCTTTATTGATTAGTGTGTT+TGG | - | chr2_1:67474863-67474882 | Msa0219690:intron | 30.0% |
| TTTGTACTTGCAGAATAATG+TGG | - | chr2_1:67475054-67475073 | Msa0219690:intron | 30.0% | |
| GTTTCTGTAACTTCTATACT+TGG | - | chr2_1:67475076-67475095 | Msa0219690:intron | 30.0% | |
| AATTCTGATAATACAGGTTC+TGG | - | chr2_1:67475103-67475122 | Msa0219690:intron | 30.0% | |
| !!! | TCAACCATAGGACTATTTTT+TGG | + | chr2_1:67475275-67475294 | None:intergenic | 30.0% |
| AAAAAATAGTCCTATGGTTG+AGG | - | chr2_1:67475274-67475293 | Msa0219690:intron | 30.0% | |
| ATTAATAAGAAGAAGGTGAG+GGG | + | chr2_1:67475433-67475452 | None:intergenic | 30.0% | |
| CTATTAATAAGAAGAAGGTG+AGG | + | chr2_1:67475435-67475454 | None:intergenic | 30.0% | |
| CTCACCTTCTTCTTATTAAT+AGG | - | chr2_1:67475433-67475452 | Msa0219690:intron | 30.0% | |
| ATTCATTTAGATAGCTGGTT+AGG | + | chr2_1:67475496-67475515 | None:intergenic | 30.0% | |
| TGTGTATTCATTTAGATAGC+TGG | + | chr2_1:67475501-67475520 | None:intergenic | 30.0% | |
| ! | GAAGTACTATGACAAAACAT+TGG | - | chr2_1:67475530-67475549 | Msa0219690:intron | 30.0% |
| GCTCCTTATTCTTTCAAAAT+GGG | + | chr2_1:67475643-67475662 | None:intergenic | 30.0% | |
| ATCAAATGCCACTACAAAAT+AGG | + | chr2_1:67475679-67475698 | None:intergenic | 30.0% | |
| ! | TATTTTGTAGTGGCATTTGA+TGG | - | chr2_1:67475678-67475697 | Msa0219690:intron | 30.0% |
| ACATGTTCATCAAGTTTCAA+GGG | + | chr2_1:67475708-67475727 | None:intergenic | 30.0% | |
| AACATGTTCATCAAGTTTCA+AGG | + | chr2_1:67475709-67475728 | None:intergenic | 30.0% | |
| TGAAACTGTTCCTTACATTT+GGG | - | chr2_1:67475903-67475922 | Msa0219690:intron | 30.0% | |
| TAATGTGGAAAAGGATAGAT+GGG | + | chr2_1:67475963-67475982 | None:intergenic | 30.0% | |
| AGAATCATGTAATGTGGAAA+AGG | + | chr2_1:67475972-67475991 | None:intergenic | 30.0% | |
| ! | TTTTCCACATTACATGATTC+TGG | - | chr2_1:67475971-67475990 | Msa0219690:intron | 30.0% |
| CAATGATTTACTACTTGTAG+AGG | + | chr2_1:67476106-67476125 | None:intergenic | 30.0% | |
| CTCTACAAGTAGTAAATCAT+TGG | - | chr2_1:67476104-67476123 | Msa0219690:intron | 30.0% | |
| ATATTGCTTTGTATCATGCT+TGG | - | chr2_1:67476128-67476147 | Msa0219690:intron | 30.0% | |
| TAAACAAGTTAGGGTTAATG+TGG | - | chr2_1:67476466-67476485 | Msa0219690:intron | 30.0% | |
| ATTGTGTTCTATGCTAAAAC+TGG | - | chr2_1:67476552-67476571 | Msa0219690:intron | 30.0% | |
| !!! | CTAAAACTGGCTTTTGAAAT+TGG | - | chr2_1:67476565-67476584 | Msa0219690:intron | 30.0% |
| AATTAGCCACCTATAATTGA+TGG | - | chr2_1:67476771-67476790 | Msa0219690:intron | 30.0% | |
| AAAGATTATCCTTCCAATCT+TGG | + | chr2_1:67477074-67477093 | None:intergenic | 30.0% | |
| AAGGATAATCTTTGTAGCAT+TGG | - | chr2_1:67477081-67477100 | Msa0219690:intron | 30.0% | |
| ACATTGGGATAATACATGTT+CGG | + | chr2_1:67477129-67477148 | None:intergenic | 30.0% | |
| CAAAATTAGGTAACGACATT+GGG | + | chr2_1:67477144-67477163 | None:intergenic | 30.0% | |
| TCAAAATTAGGTAACGACAT+TGG | + | chr2_1:67477145-67477164 | None:intergenic | 30.0% | |
| GCTACCATGATTTCAAAATT+AGG | + | chr2_1:67477157-67477176 | None:intergenic | 30.0% | |
| !! | TTTGAAATCATGGTAGCTTT+TGG | - | chr2_1:67477160-67477179 | Msa0219690:CDS | 30.0% |
| AAGATCAACCAGTAAATCTT+AGG | - | chr2_1:67477243-67477262 | Msa0219690:CDS | 30.0% | |
| CAATATGTCCTAAGATTTAC+TGG | + | chr2_1:67477254-67477273 | None:intergenic | 30.0% | |
| GTTGAAGAAGTTAGGGTTTA+GGG | - | chr2_1:67474483-67474502 | Msa0219690:three_prime_UTR | 35.0% | |
| AGCGAATAATCTGAAAATGG+AGG | + | chr2_1:67474626-67474645 | None:intergenic | 35.0% | |
| AAAAGGGGAAAAACCTGTTT+GGG | + | chr2_1:67474651-67474670 | None:intergenic | 35.0% | |
| GTGACCCAATTGAAGAAATT+AGG | + | chr2_1:67474679-67474698 | None:intergenic | 35.0% | |
| TGGTTACAACTCTGCAAAAT+TGG | - | chr2_1:67474792-67474811 | Msa0219690:intron | 35.0% | |
| GGTTACAACTCTGCAAAATT+GGG | - | chr2_1:67474793-67474812 | Msa0219690:intron | 35.0% | |
| AGGGAATGTAAGAACTTACA+GGG | + | chr2_1:67474846-67474865 | None:intergenic | 35.0% | |
| AAGGGAATGTAAGAACTTAC+AGG | + | chr2_1:67474847-67474866 | None:intergenic | 35.0% | |
| ! | GTAATTACATGTGTTGGTGT+CGG | - | chr2_1:67474969-67474988 | Msa0219690:intron | 35.0% |
| CACACTTCAATTAGATGTGT+TGG | - | chr2_1:67474999-67475018 | Msa0219690:intron | 35.0% | |
| TCTGTAACTTCTATACTTGG+TGG | - | chr2_1:67475079-67475098 | Msa0219690:intron | 35.0% | |
| CTGTAACTTCTATACTTGGT+GGG | - | chr2_1:67475080-67475099 | Msa0219690:intron | 35.0% | |
| TTTATCACAGTCTTGAAGAC+TGG | - | chr2_1:67475221-67475240 | Msa0219690:intron | 35.0% | |
| !! | GACTGGTCTCAATATAATCA+TGG | - | chr2_1:67475238-67475257 | Msa0219690:intron | 35.0% |
| CTATACACATAGTTTAGGGA+AGG | - | chr2_1:67475325-67475344 | Msa0219690:intron | 35.0% | |
| GGTGGTTAATTAGGTAGTTA+GGG | + | chr2_1:67475475-67475494 | None:intergenic | 35.0% | |
| AGGTGGTTAATTAGGTAGTT+AGG | + | chr2_1:67475476-67475495 | None:intergenic | 35.0% | |
| TTACTAATGTTGGATCCAGT+GGG | - | chr2_1:67475616-67475635 | Msa0219690:intron | 35.0% | |
| !! | GGTCCCATTTTGAAAGAATA+AGG | - | chr2_1:67475637-67475656 | Msa0219690:intron | 35.0% |
| GGCTCCTTATTCTTTCAAAA+TGG | + | chr2_1:67475644-67475663 | None:intergenic | 35.0% | |
| GAATAAGGAGCCAAACAAAT+CGG | - | chr2_1:67475652-67475671 | Msa0219690:intron | 35.0% | |
| ! | CAAAATAGGTCCGATTTGTT+TGG | + | chr2_1:67475665-67475684 | None:intergenic | 35.0% |
| ! | AAATCGGACCTATTTTGTAG+TGG | - | chr2_1:67475668-67475687 | Msa0219690:intron | 35.0% |
| ! | TACTGACTAATGTCACAACT+CGG | - | chr2_1:67475813-67475832 | Msa0219690:intron | 35.0% |
| CAAATGTAAGGAACAGTTTC+AGG | + | chr2_1:67475904-67475923 | None:intergenic | 35.0% | |
| CTGAAACTGTTCCTTACATT+TGG | - | chr2_1:67475902-67475921 | Msa0219690:intron | 35.0% | |
| GTAATGTGGAAAAGGATAGA+TGG | + | chr2_1:67475964-67475983 | None:intergenic | 35.0% | |
| ACAACCAGAATCATGTAATG+TGG | + | chr2_1:67475978-67475997 | None:intergenic | 35.0% | |
| ! | TACATGATTCTGGTTGTATG+AGG | - | chr2_1:67475981-67476000 | Msa0219690:intron | 35.0% |
| TTGTAGAGGTAGAAAAACAG+AGG | + | chr2_1:67476092-67476111 | None:intergenic | 35.0% | |
| CTTGAACATTCTCTTTACAC+AGG | - | chr2_1:67476361-67476380 | Msa0219690:intron | 35.0% | |
| !! | AACGCTATCTGAAAGTATCA+CGG | + | chr2_1:67476644-67476663 | None:intergenic | 35.0% |
| ATCTGCAGTTACTTAGTATC+AGG | - | chr2_1:67476716-67476735 | Msa0219690:intron | 35.0% | |
| GGCACTAGCATTAGATATTA+TGG | - | chr2_1:67476737-67476756 | Msa0219690:intron | 35.0% | |
| TTCCTACCCAAATATCACAT+TGG | - | chr2_1:67476868-67476887 | Msa0219690:intron | 35.0% | |
| AGCTCTCCAATGTGATATTT+GGG | + | chr2_1:67476877-67476896 | None:intergenic | 35.0% | |
| AAGCTCTCCAATGTGATATT+TGG | + | chr2_1:67476878-67476897 | None:intergenic | 35.0% | |
| TATCTGCAATCCATGAAAGT+TGG | + | chr2_1:67477000-67477019 | None:intergenic | 35.0% | |
| TGGTAGCTATTTGTTTACGT+TGG | - | chr2_1:67477180-67477199 | Msa0219690:CDS | 35.0% | |
| AGTTACCATTTGTAAACCAG+CGG | + | chr2_1:67477220-67477239 | None:intergenic | 35.0% | |
| ! | CTTTTCGAATTTCACGTGCT+AGG | + | chr2_1:67474454-67474473 | None:intergenic | 40.0% |
| GAAATTCGAAAAGCTTGAGC+TGG | - | chr2_1:67474461-67474480 | Msa0219690:three_prime_UTR | 40.0% | |
| TTGAGCTGGTTGAAGAAGTT+AGG | - | chr2_1:67474475-67474494 | Msa0219690:three_prime_UTR | 40.0% | |
| TGAGCTGGTTGAAGAAGTTA+GGG | - | chr2_1:67474476-67474495 | Msa0219690:three_prime_UTR | 40.0% | |
| GGTTGAAGAAGTTAGGGTTT+AGG | - | chr2_1:67474482-67474501 | Msa0219690:three_prime_UTR | 40.0% | |
| GATTATTCGCTTTCCCAAAC+AGG | - | chr2_1:67474635-67474654 | Msa0219690:three_prime_UTR | 40.0% | |
| GAAAAGGGGAAAAACCTGTT+TGG | + | chr2_1:67474652-67474671 | None:intergenic | 40.0% | |
| !! | ATGTGTTGGTGCTACATAGA+TGG | - | chr2_1:67475013-67475032 | Msa0219690:intron | 40.0% |
| GGTGGGAATTCTGATAATAC+AGG | - | chr2_1:67475097-67475116 | Msa0219690:intron | 40.0% | |
| ATAGTCCTATGGTTGAGGTA+CGG | - | chr2_1:67475279-67475298 | Msa0219690:intron | 40.0% | |
| CTCTCAATAAACTACGCACA+AGG | + | chr2_1:67475361-67475380 | None:intergenic | 40.0% | |
| AGCTGGTTAGGTGGTTAATT+AGG | + | chr2_1:67475484-67475503 | None:intergenic | 40.0% | |
| CATTTAGATAGCTGGTTAGG+TGG | + | chr2_1:67475493-67475512 | None:intergenic | 40.0% | |
| GATCCAACATTAGTAAGAGG+AGG | + | chr2_1:67475612-67475631 | None:intergenic | 40.0% | |
| CTGGATCCAACATTAGTAAG+AGG | + | chr2_1:67475615-67475634 | None:intergenic | 40.0% | |
| CTTACTAATGTTGGATCCAG+TGG | - | chr2_1:67475615-67475634 | Msa0219690:intron | 40.0% | |
| !! | CAAACTGGAAAACTTGGTGT+TGG | + | chr2_1:67475768-67475787 | None:intergenic | 40.0% |
| TAAGACCCATATCACTGTGA+AGG | + | chr2_1:67475795-67475814 | None:intergenic | 40.0% | |
| GATTTCTCAGTCTACTGCAT+TGG | - | chr2_1:67476249-67476268 | Msa0219690:intron | 40.0% | |
| ! | GTTTTACGGCATAGAATCTC+AGG | + | chr2_1:67476516-67476535 | None:intergenic | 40.0% |
| !! | AACTATGGTTGTGATGGGTA+AGG | + | chr2_1:67476669-67476688 | None:intergenic | 40.0% |
| AGAATCACGTCATAGTAGCT+CGG | - | chr2_1:67476692-67476711 | Msa0219690:intron | 40.0% | |
| CTCCAATGTGATATTTGGGT+AGG | + | chr2_1:67476873-67476892 | None:intergenic | 40.0% | |
| TTATCCTTCCAATCTTGGCT+TGG | + | chr2_1:67477069-67477088 | None:intergenic | 40.0% | |
| !! | ATCTTTGTAGCATTGGCTGA+AGG | - | chr2_1:67477088-67477107 | Msa0219690:intron | 40.0% |
| !! | TCTTTGTAGCATTGGCTGAA+GGG | - | chr2_1:67477089-67477108 | Msa0219690:intron | 40.0% |
| !! | AACAACCGCTGGTTTACAAA+TGG | - | chr2_1:67477212-67477231 | Msa0219690:CDS | 40.0% |
| GGTGAATCAGTCTTCGACTA+GGG | + | chr2_1:67475396-67475415 | None:intergenic | 45.0% | |
| TGGTGAATCAGTCTTCGACT+AGG | + | chr2_1:67475397-67475416 | None:intergenic | 45.0% | |
| TAAGAAGAAGGTGAGGGGAA+GGG | + | chr2_1:67475428-67475447 | None:intergenic | 45.0% | |
| ATAAGAAGAAGGTGAGGGGA+AGG | + | chr2_1:67475429-67475448 | None:intergenic | 45.0% | |
| TGGCCTCCTCTTACTAATGT+TGG | - | chr2_1:67475606-67475625 | Msa0219690:intron | 45.0% | |
| TCTTTCAAAATGGGACCCAC+TGG | + | chr2_1:67475634-67475653 | None:intergenic | 45.0% | |
| GGTGGACAAACTGGAAAACT+TGG | + | chr2_1:67475774-67475793 | None:intergenic | 45.0% | |
| TGTCCACCTTCACAGTGATA+TGG | - | chr2_1:67475786-67475805 | Msa0219690:intron | 45.0% | |
| GTCCACCTTCACAGTGATAT+GGG | - | chr2_1:67475787-67475806 | Msa0219690:intron | 45.0% | |
| TCAAAATCACTACTCCCGAG+GGG | + | chr2_1:67475856-67475875 | None:intergenic | 45.0% | |
| GTCAAAATCACTACTCCCGA+GGG | + | chr2_1:67475857-67475876 | None:intergenic | 45.0% | |
| AGTCAAAATCACTACTCCCG+AGG | + | chr2_1:67475858-67475877 | None:intergenic | 45.0% | |
| ACTGTTCCTTACATTTGGGC+CGG | - | chr2_1:67475907-67475926 | Msa0219690:intron | 45.0% | |
| TGTGGAAAAGGATAGATGGG+TGG | + | chr2_1:67475960-67475979 | None:intergenic | 45.0% | |
| TTGTATGAGGCACGTTTGGT+CGG | - | chr2_1:67475994-67476013 | Msa0219690:intron | 45.0% | |
| CTCGCAACTATGGTTGTGAT+GGG | + | chr2_1:67476674-67476693 | None:intergenic | 45.0% | |
| TCTCGCAACTATGGTTGTGA+TGG | + | chr2_1:67476675-67476694 | None:intergenic | 45.0% | |
| TGACGTGATTCTCGCAACTA+TGG | + | chr2_1:67476684-67476703 | None:intergenic | 45.0% | |
| TACACCAAGCCAAGATTGGA+AGG | - | chr2_1:67477062-67477081 | Msa0219690:intron | 45.0% | |
| ! | GGATTTTCGTAAACAACCGC+TGG | - | chr2_1:67477201-67477220 | Msa0219690:CDS | 45.0% |
| ! | TCTGGCATTGCTCGTCGATT+AGG | - | chr2_1:67475121-67475140 | Msa0219690:intron | 50.0% |
| AGAGACCGTACCTCAACCAT+AGG | + | chr2_1:67475287-67475306 | None:intergenic | 50.0% | |
| TGAGGGGAAGGGAGTTCATT+TGG | + | chr2_1:67475417-67475436 | None:intergenic | 50.0% | |
| TTAGTAAGAGGAGGCCAGAG+AGG | + | chr2_1:67475603-67475622 | None:intergenic | 50.0% | |
| CACTGTGAAGGTGGACAAAC+TGG | + | chr2_1:67475783-67475802 | None:intergenic | 50.0% | |
| GACCCATATCACTGTGAAGG+TGG | + | chr2_1:67475792-67475811 | None:intergenic | 50.0% | |
| ! | GAGGGGCTGTTTCAAACAGT+GGG | + | chr2_1:67475839-67475858 | None:intergenic | 50.0% |
| ! | CACTGTTTGAAACAGCCCCT+CGG | - | chr2_1:67475838-67475857 | Msa0219690:intron | 50.0% |
| ! | ACTGTTTGAAACAGCCCCTC+GGG | - | chr2_1:67475839-67475858 | Msa0219690:intron | 50.0% |
| CTGTTCCTTACATTTGGGCC+GGG | - | chr2_1:67475908-67475927 | Msa0219690:intron | 50.0% | |
| CTGGTTGTATGAGGCACGTT+TGG | - | chr2_1:67475990-67476009 | Msa0219690:intron | 50.0% | |
| ! | AGAGAGAGCACAGAAGAGGT+TGG | + | chr2_1:67476020-67476039 | None:intergenic | 50.0% |
| AGGTCAGGTGGCTTCAGAAT+TGG | - | chr2_1:67476059-67476078 | Msa0219690:intron | 50.0% | |
| TGCTGCCAGAGTTACCTCTC+TGG | - | chr2_1:67475586-67475605 | Msa0219690:intron | 55.0% | |
| ! | CGAGGGGCTGTTTCAAACAG+TGG | + | chr2_1:67475840-67475859 | None:intergenic | 55.0% |
| ! | CAGTGCCAGGTTGACCTCTA+GGG | + | chr2_1:67475934-67475953 | None:intergenic | 55.0% |
| ! | ACAGTGCCAGGTTGACCTCT+AGG | + | chr2_1:67475935-67475954 | None:intergenic | 55.0% |
| TAGAGGTCAACCTGGCACTG+TGG | - | chr2_1:67475934-67475953 | Msa0219690:intron | 55.0% | |
| ! | CAGCAGAGAGAGCACAGAAG+AGG | + | chr2_1:67476024-67476043 | None:intergenic | 55.0% |
| TGCTGTTCCTGCAACAGCTC+AGG | - | chr2_1:67476039-67476058 | Msa0219690:intron | 55.0% | |
| TTCCTGCAACAGCTCAGGTC+AGG | - | chr2_1:67476044-67476063 | Msa0219690:intron | 55.0% | |
| GGGCTACACCAAGCCAAGAT+TGG | - | chr2_1:67477058-67477077 | Msa0219690:intron | 55.0% | |
| GGAGGCCAGAGAGGTAACTC+TGG | + | chr2_1:67475594-67475613 | None:intergenic | 60.0% | |
| TAGGGCCCGGCCCAAATGTA+AGG | + | chr2_1:67475916-67475935 | None:intergenic | 60.0% | |
| CACCTGACCTGAGCTGTTGC+AGG | + | chr2_1:67476049-67476068 | None:intergenic | 60.0% | |
| CTGCAACAGCTCAGGTCAGG+TGG | - | chr2_1:67476047-67476066 | Msa0219690:intron | 60.0% | |
| ACATTTGGGCCGGGCCCTAG+AGG | - | chr2_1:67475917-67475936 | Msa0219690:intron | 65.0% | |
| !! | CCAGGTTGACCTCTAGGGCC+CGG | + | chr2_1:67475929-67475948 | None:intergenic | 65.0% |
| AGATGGGTGGCCACAGTGCC+AGG | + | chr2_1:67475947-67475966 | None:intergenic | 65.0% | |
| CCGGGCCCTAGAGGTCAACC+TGG | - | chr2_1:67475926-67475945 | Msa0219690:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 67474448 | 67477348 | 67474448 | ID=Msa0219690;Name=Msa0219690 |
| chr2_1 | mRNA | 67474448 | 67477348 | 67474448 | ID=Msa0219690-mRNA-1;Parent=Msa0219690;Name=Msa0219690-mRNA-1;_AED=0.14;_eAED=0.14;_QI=62|0.66|0.75|1|0|0.25|4|235|91 |
| chr2_1 | exon | 67474448 | 67474551 | 67474448 | ID=Msa0219690-mRNA-1:exon:19095;Parent=Msa0219690-mRNA-1 |
| chr2_1 | exon | 67474577 | 67474779 | 67474577 | ID=Msa0219690-mRNA-1:exon:19094;Parent=Msa0219690-mRNA-1 |
| chr2_1 | exon | 67476501 | 67476557 | 67476501 | ID=Msa0219690-mRNA-1:exon:19093;Parent=Msa0219690-mRNA-1 |
| chr2_1 | exon | 67477140 | 67477348 | 67477140 | ID=Msa0219690-mRNA-1:exon:19092;Parent=Msa0219690-mRNA-1 |
| chr2_1 | five_prime_UTR | 67477287 | 67477348 | 67477287 | ID=Msa0219690-mRNA-1:five_prime_utr;Parent=Msa0219690-mRNA-1 |
| chr2_1 | CDS | 67477140 | 67477286 | 67477140 | ID=Msa0219690-mRNA-1:cds;Parent=Msa0219690-mRNA-1 |
| chr2_1 | CDS | 67476501 | 67476557 | 67476501 | ID=Msa0219690-mRNA-1:cds;Parent=Msa0219690-mRNA-1 |
| chr2_1 | CDS | 67474708 | 67474779 | 67474708 | ID=Msa0219690-mRNA-1:cds;Parent=Msa0219690-mRNA-1 |
| chr2_1 | three_prime_UTR | 67474577 | 67474707 | 67474577 | ID=Msa0219690-mRNA-1:three_prime_utr;Parent=Msa0219690-mRNA-1 |
| chr2_1 | three_prime_UTR | 67474448 | 67474551 | 67474448 | ID=Msa0219690-mRNA-1:three_prime_utr;Parent=Msa0219690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
