AlfalfaGEDB | Msa0344540

M. sativa cultivar zhongmu-4 / Msa0344540

KEGG: K14766
GO: -
PFAM: PF04147.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0344540	XP_024628439.2	98.434	447	7	0	1	447	511	957	0.0	915

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0344540	sp\|Q8R3N1\|NOP14_MOUSE	31.358	405	258	8	6	401	424	817	2.84e-48	180

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0344540	A0A396JQQ9	98.434	447	7	0	1	447	511	957	0.0	915

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa0344540	0.810724	9.998626e-51	-8.615850e-47
Msa0007440	Msa0344540	0.808663	2.772354e-50	-8.615850e-47
Msa0011960	Msa0344540	0.823063	1.694869e-53	-8.615850e-47
Msa0026150	Msa0344540	0.829378	5.322321e-55	-8.615850e-47
Msa0027770	Msa0344540	0.803380	3.584440e-49	-8.615850e-47
Msa0032090	Msa0344540	0.812456	4.201298e-51	-8.615850e-47
Msa0032580	Msa0344540	0.809498	1.837300e-50	-8.615850e-47
Msa0033110	Msa0344540	0.820021	8.546564e-53	-8.615850e-47
Msa0033260	Msa0344540	0.811753	5.980408e-51	-8.615850e-47
Msa0040690	Msa0344540	0.818608	1.793699e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0344540	MtrunA17_Chr1g0167361	98.434	447	7	0	1	447	511	957	0.0	915
Msa0344540	MtrunA17_Chr1g0181141	98.210	447	8	0	1	447	518	964	0.0	915

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0344540	AT1G69070.2	62.329	438	165	0	2	439	457	894	0.0	566
Msa0344540	AT1G69070.1	61.872	438	164	1	2	439	457	891	0.0	558

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Find 201 sgRNAs with CRISPR-Local

Find 518 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATGCCAAATGCATTA+CGG	0.387295	3_1:-3297117	Msa0344540:CDS
AAAATTGGTGAAAATATTTC+TGG	0.216827	3_1:+3297169	None:intergenic
AAACAAGATGAAAGCTTTGA+AGG	0.398300	3_1:-3302668	Msa0344540:five_prime_UTR
AAACATCCTTGGTGTTTAGA+AGG	0.369544	3_1:+3296327	None:intergenic
AAACTAGAGAAGAAAGAATT+AGG	0.172943	3_1:+3304350	None:intergenic
AAACTGTCAGTAGTGAAGAA+TGG	0.525835	3_1:+3297533	None:intergenic
AAAGATGAAGACCTGCTGGA+AGG	0.616144	3_1:-3302751	Msa0344540:five_prime_UTR
AAAGCAAGAGCTGAGAAGTA+TGG	0.398033	3_1:-3296689	Msa0344540:CDS
AAAGGAGATACCAAAAGAAT+GGG	0.479733	3_1:-3304075	Msa0344540:five_prime_UTR
AAAGTTTGAATAAATACTAT+TGG	0.330563	3_1:+3298975	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAAGAAGAACAACAAGAT+GGG	-	chr3_1:3296348-3296367	Msa0344540:three_prime_UTR	30.0%
AAAGGAGATACCAAAAGAAT+GGG	-	chr3_1:3296474-3296493	Msa0344540:three_prime_UTR	30.0%
GATGAATTTGAAGGAATTGA+TGG	-	chr3_1:3296848-3296867	Msa0344540:CDS	30.0%
ATTTCTGTTTCAGTGACTAT+AGG	-	chr3_1:3297501-3297520	Msa0344540:intron	30.0%
TTTCTGTTTCAGTGACTATA+GGG	-	chr3_1:3297502-3297521	Msa0344540:intron	30.0%
TGTGCGATATTTCTTAAATC+AGG	-	chr3_1:3297684-3297703	Msa0344540:intron	30.0%
GTGCGATATTTCTTAAATCA+GGG	-	chr3_1:3297685-3297704	Msa0344540:intron	30.0%
TTCAAAGCTTTCATCTTGTT+TGG	+	chr3_1:3297882-3297901	None:intergenic	30.0%
GACAATGAATAATTCTGTTC+AGG	-	chr3_1:3297965-3297984	Msa0344540:intron	30.0%
AAACTATGACTAAAAAGGGT+TGG	-	chr3_1:3298742-3298761	Msa0344540:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	3296153	3304418	3296153	ID=Msa0344540;Name=Msa0344540
chr3_1	mRNA	3296153	3304418	3296153	ID=Msa0344540-mRNA-1;Parent=Msa0344540;Name=Msa0344540-mRNA-1;_AED=0.07;_eAED=0.07;_QI=1686\|1\|1\|1\|0.64\|0.66\|15\|292\|447
chr3_1	exon	3296153	3296173	3296153	ID=Msa0344540-mRNA-1:exon:1046;Parent=Msa0344540-mRNA-1
chr3_1	exon	3296314	3296504	3296314	ID=Msa0344540-mRNA-1:exon:1045;Parent=Msa0344540-mRNA-1
chr3_1	exon	3296527	3296871	3296527	ID=Msa0344540-mRNA-1:exon:1044;Parent=Msa0344540-mRNA-1
chr3_1	exon	3296986	3297264	3296986	ID=Msa0344540-mRNA-1:exon:1043;Parent=Msa0344540-mRNA-1
chr3_1	exon	3297530	3297669	3297530	ID=Msa0344540-mRNA-1:exon:1042;Parent=Msa0344540-mRNA-1
chr3_1	exon	3298926	3299030	3298926	ID=Msa0344540-mRNA-1:exon:1041;Parent=Msa0344540-mRNA-1
chr3_1	exon	3299936	3300129	3299936	ID=Msa0344540-mRNA-1:exon:1040;Parent=Msa0344540-mRNA-1
chr3_1	exon	3300243	3300435	3300243	ID=Msa0344540-mRNA-1:exon:1039;Parent=Msa0344540-mRNA-1
chr3_1	exon	3301247	3301965	3301247	ID=Msa0344540-mRNA-1:exon:1038;Parent=Msa0344540-mRNA-1
chr3_1	exon	3302367	3302495	3302367	ID=Msa0344540-mRNA-1:exon:1037;Parent=Msa0344540-mRNA-1
chr3_1	exon	3302585	3302797	3302585	ID=Msa0344540-mRNA-1:exon:1036;Parent=Msa0344540-mRNA-1
chr3_1	exon	3302889	3302948	3302889	ID=Msa0344540-mRNA-1:exon:1035;Parent=Msa0344540-mRNA-1
chr3_1	exon	3303285	3303367	3303285	ID=Msa0344540-mRNA-1:exon:1034;Parent=Msa0344540-mRNA-1
chr3_1	exon	3303642	3303780	3303642	ID=Msa0344540-mRNA-1:exon:1033;Parent=Msa0344540-mRNA-1
chr3_1	exon	3303908	3304418	3303908	ID=Msa0344540-mRNA-1:exon:1032;Parent=Msa0344540-mRNA-1
chr3_1	five_prime_UTR	3303908	3304418	3303908	ID=Msa0344540-mRNA-1:five_prime_utr;Parent=Msa0344540-mRNA-1
chr3_1	five_prime_UTR	3303642	3303780	3303642	ID=Msa0344540-mRNA-1:five_prime_utr;Parent=Msa0344540-mRNA-1
chr3_1	five_prime_UTR	3303285	3303367	3303285	ID=Msa0344540-mRNA-1:five_prime_utr;Parent=Msa0344540-mRNA-1
chr3_1	five_prime_UTR	3302889	3302948	3302889	ID=Msa0344540-mRNA-1:five_prime_utr;Parent=Msa0344540-mRNA-1
chr3_1	five_prime_UTR	3302585	3302797	3302585	ID=Msa0344540-mRNA-1:five_prime_utr;Parent=Msa0344540-mRNA-1
chr3_1	five_prime_UTR	3302367	3302495	3302367	ID=Msa0344540-mRNA-1:five_prime_utr;Parent=Msa0344540-mRNA-1
chr3_1	five_prime_UTR	3301415	3301965	3301415	ID=Msa0344540-mRNA-1:five_prime_utr;Parent=Msa0344540-mRNA-1
chr3_1	CDS	3301247	3301414	3301247	ID=Msa0344540-mRNA-1:cds;Parent=Msa0344540-mRNA-1
chr3_1	CDS	3300243	3300435	3300243	ID=Msa0344540-mRNA-1:cds;Parent=Msa0344540-mRNA-1
chr3_1	CDS	3299936	3300129	3299936	ID=Msa0344540-mRNA-1:cds;Parent=Msa0344540-mRNA-1
chr3_1	CDS	3298926	3299030	3298926	ID=Msa0344540-mRNA-1:cds;Parent=Msa0344540-mRNA-1
chr3_1	CDS	3297530	3297669	3297530	ID=Msa0344540-mRNA-1:cds;Parent=Msa0344540-mRNA-1
chr3_1	CDS	3296986	3297264	3296986	ID=Msa0344540-mRNA-1:cds;Parent=Msa0344540-mRNA-1
chr3_1	CDS	3296607	3296871	3296607	ID=Msa0344540-mRNA-1:cds;Parent=Msa0344540-mRNA-1
chr3_1	three_prime_UTR	3296527	3296606	3296527	ID=Msa0344540-mRNA-1:three_prime_utr;Parent=Msa0344540-mRNA-1
chr3_1	three_prime_UTR	3296314	3296504	3296314	ID=Msa0344540-mRNA-1:three_prime_utr;Parent=Msa0344540-mRNA-1
chr3_1	three_prime_UTR	3296153	3296173	3296153	ID=Msa0344540-mRNA-1:three_prime_utr;Parent=Msa0344540-mRNA-1

Gene Sequence

>Msa0344540

ATGTCGAAAGAGTTGGAGATTCCTTATATAATTGAAGCTCCGAAGACCTTTGAAGAATTATGTTCACTGGTGGATAAACGTTCAAATTCTGACACTATCTTAATCATCAATCGGATTCGGAAAAGCAATCCGATCACACTTGCTGCAGAAAATCGAAAGAAAGTACAAGTATTTTATGGAGTATTATTGCAGTATTTTGCTGTTTTGGCAAATAAGAAAACGTTGAACGTTGAATTGATTAACATGCTAGTGAAACCATTGATAGAGATGAGTACGGAAATCCCATACTTTGCTGCAATATGTGCTCGTCGCAGAATAGAAATCACTAGAAAGCAATTTGTTGAGAGTATAAAAAACGCAGAAAGTAGCAGCTGGCCTTCTTCAAAGACGCTATGTCTCTTGCGATTGTGGTCCATGGTATTTCCATGTTCCGATTTTAGACATCCAGTTATGACTCCTGTGATACTATTGATGTGCGAATATCTGATGCGTTGCCCAATAACATCTGGCCGTGATATTGCCGTTGGTTCTTTCTTATGTTCTATGCTTCTCTCTGTATTTAAACAGTCACGAAAGTTCTGTCCTGAACCAATAGTATTTATTCAAACTTTGCTGCTAGCAACCACTGAAAGTAAACATATATCATGCGAAAATTCTCAGTTATATCATCTTATGGAACTGAAAGATCTCAAGCCACTATTGCGCATTAATGAGGAAGTAGACAAGATTAGCGCTTTGAATTTCTTTAAGTTAATAGACATGCCTGAAGACTCTCCATTCTTCACTACTGACAGTTTCAGGGCTAGTTTATTAGTTACCTCTGTTGAAACCCTACAAGGATATATCAATGCCTATGATAACTTGAGTTCGTTCCCAGAAATATTTTCACCAATTTTGAGATTACTACTTGAGATAGCTGAACAGAAAAATATGCCAAATGCATTACGGGATAAAATTAAAGATGTGGCTGAGCTGATTAAGTTGAAAGTGGATGAACATCATACTTTGAGGCGACCACTTCAAATGCGGAAACAAAAGCCAGTTCCAATCAAATTACTGAATCCTAAGTTTGAGGAAAACTATGTTAAGGGTAGAGATTATGATCCAGACCGTGTGCGAGCTGAAAGAAAAAAATTGAAGAGAGAGGTGAGGCGTGAAGCTAAAGGGGCTGCTCGTGAAATACGTAAAGACAACTACTTCTTGCTTGATGTGAAGGAAAAAGAAAGGTCTTTAATGGAGAAAGCAAGAGCTGAGAAGTATGGAAGGACTAAAGCTTTCCTTCAAGAGCAAGAACATGCTTTCAAATCTGGACAACTAGGAAAAGGGAAGAAGAGAAGTAGATAA

Protein sequence

>Msa0344540

MSKELEIPYIIEAPKTFEELCSLVDKRSNSDTILIINRIRKSNPITLAAENRKKVQVFYGVLLQYFAVLANKKTLNVELINMLVKPLIEMSTEIPYFAAICARRRIEITRKQFVESIKNAESSSWPSSKTLCLLRLWSMVFPCSDFRHPVMTPVILLMCEYLMRCPITSGRDIAVGSFLCSMLLSVFKQSRKFCPEPIVFIQTLLLATTESKHISCENSQLYHLMELKDLKPLLRINEEVDKISALNFFKLIDMPEDSPFFTTDSFRASLLVTSVETLQGYINAYDNLSSFPEIFSPILRLLLEIAEQKNMPNALRDKIKDVAELIKLKVDEHHTLRRPLQMRKQKPVPIKLLNPKFEENYVKGRDYDPDRVRAERKKLKREVRREAKGAAREIRKDNYFLLDVKEKERSLMEKARAEKYGRTKAFLQEQEHAFKSGQLGKGKKRSR*