Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230820 | ABE79573.2 | 95.791 | 594 | 22 | 1 | 1 | 594 | 1 | 591 | 0.0 | 1060 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230820 | sp|Q6DFF2|BRD4B_XENLA | 37.963 | 108 | 65 | 2 | 189 | 295 | 52 | 158 | 1.05e-14 | 81.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230820 | Q1SKV9 | 95.791 | 594 | 22 | 1 | 1 | 594 | 1 | 591 | 0.0 | 1060 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0029630 | Msa0230820 | 0.817734 | 2.828081e-52 | -8.615850e-47 |
| Msa0125450 | Msa0230820 | 0.811273 | 7.603196e-51 | -8.615850e-47 |
| Msa0125540 | Msa0230820 | 0.811386 | 7.184450e-51 | -8.615850e-47 |
| Msa0131590 | Msa0230820 | 0.808291 | 3.329722e-50 | -8.615850e-47 |
| Msa0136120 | Msa0230820 | 0.801093 | 1.059513e-48 | -8.615850e-47 |
| Msa0173800 | Msa0230820 | 0.812355 | 4.420757e-51 | -8.615850e-47 |
| Msa0190870 | Msa0230820 | 0.835371 | 1.744359e-56 | -8.615850e-47 |
| Msa0230820 | Msa0230890 | 0.833640 | 4.749587e-56 | -8.615850e-47 |
| Msa0230820 | Msa0237200 | 0.800775 | 1.230109e-48 | -8.615850e-47 |
| Msa0230820 | Msa0270380 | 0.875340 | 3.328062e-68 | -8.615850e-47 |
| Msa0230820 | Msa0336450 | 0.840999 | 6.199940e-58 | -8.615850e-47 |
| Msa0230820 | Msa0336540 | 0.850832 | 1.315371e-60 | -8.615850e-47 |
| Msa0230820 | Msa0377820 | 0.801307 | 9.578559e-49 | -8.615850e-47 |
| Msa0230820 | Msa0378970 | 0.817704 | 2.872839e-52 | -8.615850e-47 |
| Msa0230820 | Msa0419720 | 0.804333 | 2.271412e-49 | -8.615850e-47 |
| Msa0230820 | Msa0426580 | 0.833374 | 5.533097e-56 | -8.615850e-47 |
| Msa0230820 | Msa0472930 | 0.813429 | 2.571146e-51 | -8.615850e-47 |
| Msa0230820 | Msa0474940 | 0.801036 | 1.088160e-48 | -8.615850e-47 |
| Msa0230820 | Msa0517590 | 0.824036 | 1.003134e-53 | -8.615850e-47 |
| Msa0230820 | Msa0549450 | 0.853205 | 2.786577e-61 | -8.615850e-47 |
| Msa0230820 | Msa0610250 | 0.809192 | 2.136289e-50 | -8.615850e-47 |
| Msa0230820 | Msa0618950 | 0.816585 | 5.125553e-52 | -8.615850e-47 |
| Msa0230820 | Msa0618970 | 0.803756 | 2.994109e-49 | -8.615850e-47 |
| Msa0230820 | Msa0622790 | 0.837573 | 4.800118e-57 | -8.615850e-47 |
| Msa0230820 | Msa0628420 | 0.809346 | 1.980227e-50 | -8.615850e-47 |
| Msa0230820 | Msa0690310 | 0.823000 | 1.753099e-53 | -8.615850e-47 |
| Msa0230820 | Msa0752700 | 0.833851 | 4.205072e-56 | -8.615850e-47 |
| Msa0230820 | Msa0794970 | 0.840530 | 8.226047e-58 | -8.615850e-47 |
| Msa0230820 | Msa0829220 | 0.804075 | 2.570691e-49 | -8.615850e-47 |
| Msa0230820 | Msa0831100 | 0.843560 | 1.299618e-58 | -8.615850e-47 |
| Msa0230820 | Msa0880450 | 0.804167 | 2.459920e-49 | -8.615850e-47 |
| Msa0230820 | Msa0894400 | 0.821912 | 3.137866e-53 | -8.615850e-47 |
| Msa0230820 | Msa0980540 | 0.831861 | 1.312802e-55 | -8.615850e-47 |
| Msa0230820 | Msa1037510 | 0.819998 | 8.649260e-53 | -8.615850e-47 |
| Msa0230820 | Msa1130980 | 0.808189 | 3.500215e-50 | -8.615850e-47 |
| Msa0230820 | Msa1206650 | 0.812675 | 3.763298e-51 | -8.615850e-47 |
| Msa0230820 | Msa1212730 | 0.817177 | 3.774669e-52 | -8.615850e-47 |
| Msa0230820 | Msa1235460 | 0.823202 | 1.572180e-53 | -8.615850e-47 |
| Msa0230820 | Msa1272600 | 0.802638 | 5.101803e-49 | -8.615850e-47 |
| Msa0230820 | Msa1418340 | 0.806885 | 6.619214e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230820 | MtrunA17_Chr2g0277091 | 95.960 | 594 | 21 | 1 | 1 | 594 | 1 | 591 | 0.0 | 1059 |
| Msa0230820 | MtrunA17_Chr8g0369041 | 41.053 | 95 | 54 | 1 | 205 | 297 | 100 | 194 | 6.08e-16 | 79.7 |
| Msa0230820 | MtrunA17_Chr4g0040981 | 38.298 | 94 | 57 | 1 | 205 | 298 | 662 | 754 | 1.04e-13 | 74.7 |
| Msa0230820 | MtrunA17_Chr6g0462121 | 36.842 | 95 | 58 | 1 | 205 | 297 | 88 | 182 | 1.16e-12 | 69.7 |
| Msa0230820 | MtrunA17_Chr4g0049471 | 30.601 | 183 | 96 | 6 | 101 | 279 | 35 | 190 | 1.82e-12 | 70.1 |
| Msa0230820 | MtrunA17_Chr2g0325411 | 38.298 | 94 | 57 | 1 | 205 | 298 | 314 | 406 | 8.41e-12 | 68.2 |
| Msa0230820 | MtrunA17_Chr2g0285151 | 36.559 | 93 | 58 | 1 | 205 | 297 | 86 | 177 | 1.12e-11 | 67.4 |
| Msa0230820 | MtrunA17_Chr2g0325391 | 38.298 | 94 | 57 | 1 | 205 | 298 | 303 | 395 | 2.67e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0230820 | AT1G58025.4 | 42.173 | 626 | 245 | 21 | 13 | 593 | 19 | 572 | 3.33e-109 | 339 |
| Msa0230820 | AT1G58025.5 | 42.173 | 626 | 245 | 21 | 13 | 593 | 19 | 572 | 3.33e-109 | 339 |
| Msa0230820 | AT1G58025.3 | 42.173 | 626 | 245 | 21 | 13 | 593 | 19 | 572 | 3.33e-109 | 339 |
| Msa0230820 | AT1G58025.6 | 42.173 | 626 | 244 | 21 | 13 | 593 | 19 | 571 | 3.84e-109 | 339 |
| Msa0230820 | AT1G58025.1 | 42.173 | 626 | 244 | 21 | 13 | 593 | 19 | 571 | 3.84e-109 | 339 |
| Msa0230820 | AT1G58025.2 | 41.680 | 631 | 247 | 21 | 13 | 594 | 19 | 577 | 7.26e-107 | 333 |
| Msa0230820 | AT3G52280.1 | 37.500 | 96 | 58 | 1 | 205 | 298 | 101 | 196 | 4.66e-15 | 77.8 |
| Msa0230820 | AT3G52280.2 | 37.500 | 96 | 58 | 1 | 205 | 298 | 118 | 213 | 8.02e-15 | 77.0 |
| Msa0230820 | AT2G34900.2 | 31.183 | 93 | 63 | 1 | 205 | 297 | 7 | 98 | 6.95e-12 | 67.0 |
| Msa0230820 | AT2G34900.1 | 31.183 | 93 | 63 | 1 | 205 | 297 | 117 | 208 | 7.68e-12 | 67.8 |
Find 194 sgRNAs with CRISPR-Local
Find 361 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAATTGCAAAAGGAAATTT+TGG | 0.068453 | 2_2:+3040221 | Msa0230820:CDS |
| CACATAAACAATCATGTTTA+TGG | 0.132600 | 2_2:-3040151 | None:intergenic |
| ATTGATACACCAATGGATTT+TGG | 0.145425 | 2_2:+3038979 | Msa0230820:CDS |
| ACAGAAGATATTGCACTTTC+TGG | 0.158951 | 2_2:+3039607 | Msa0230820:CDS |
| TAACGCGTCCAACGGATTTA+AGG | 0.159721 | 2_2:-3037907 | None:intergenic |
| CAATTCGTGCTTATTATATC+TGG | 0.169623 | 2_2:-3038242 | None:intergenic |
| TCATTGCCTGATCTGAAATT+TGG | 0.188018 | 2_2:+3038079 | Msa0230820:CDS |
| GATTAAGTCTTCAAAGGTTT+TGG | 0.200901 | 2_2:+3038132 | Msa0230820:CDS |
| CGCGGCTATTGGGTCGTTAA+TGG | 0.210579 | 2_2:+3041554 | Msa0230820:CDS |
| ACAGGAATTCCCAGAGCTTC+TGG | 0.240922 | 2_2:-3038450 | None:intergenic |
| TTTGTAAGGTTTACAGTTAC+AGG | 0.242409 | 2_2:-3037719 | None:intergenic |
| CCTTGTGCTTCTTCTGTTGC+TGG | 0.252049 | 2_2:-3041275 | None:intergenic |
| TCCTCCTCTTCCGCATCCTC+TGG | 0.253559 | 2_2:-3041075 | None:intergenic |
| AGTTCAATTCACGCGGCTAT+TGG | 0.256200 | 2_2:+3041543 | Msa0230820:CDS |
| GTCTCACCTGTGCTCCCTTT+TGG | 0.264699 | 2_2:-3039192 | None:intergenic |
| GAATAAAATTCGTTCGTTAA+AGG | 0.282241 | 2_2:-3037265 | None:intergenic |
| ATGAAGTACTGGGCCGCTGC+TGG | 0.283193 | 2_2:+3039153 | Msa0230820:CDS |
| TATAAGGAAGGTAATGAAAA+TGG | 0.284179 | 2_2:+3038395 | Msa0230820:CDS |
| CCCAGAGCTTCTGGATTAAC+AGG | 0.285043 | 2_2:-3038441 | None:intergenic |
| CAACAAGAAGGACAAGCTTT+AGG | 0.294461 | 2_2:+3041249 | Msa0230820:CDS |
| GACGCATGGATGAAACTTTA+AGG | 0.295666 | 2_2:+3041154 | Msa0230820:CDS |
| AGGATTTATGTTGGCAAGAT+TGG | 0.296597 | 2_2:-3037873 | None:intergenic |
| CGAATTGGATACCTCCTTAA+TGG | 0.303209 | 2_2:+3038258 | Msa0230820:CDS |
| AGGAAGAGATTGAAATGAAC+AGG | 0.315177 | 2_2:+3041124 | Msa0230820:CDS |
| TCGGCAAAGGCTTGCTTGTC+TGG | 0.317832 | 2_2:-3038168 | None:intergenic |
| CTGTTATAAGTATAACAATA+AGG | 0.325860 | 2_2:+3039086 | Msa0230820:CDS |
| AACAAGAAGGACAAGCTTTA+GGG | 0.331366 | 2_2:+3041250 | Msa0230820:CDS |
| CTTCAACTTGTTCATTTGTA+AGG | 0.335827 | 2_2:-3037733 | None:intergenic |
| GTTCAATTCACGCGGCTATT+GGG | 0.340292 | 2_2:+3041544 | Msa0230820:CDS |
| ATAACGATGTGCGGTACATT+TGG | 0.356948 | 2_2:+3039058 | Msa0230820:CDS |
| TAAATCCGTTGGACGCGTTA+AGG | 0.371120 | 2_2:+3037910 | Msa0230820:CDS |
| AGAAGAACTTTATGAAGTAC+TGG | 0.383247 | 2_2:+3039142 | Msa0230820:CDS |
| CAGATATAATAAGCACGAAT+TGG | 0.384681 | 2_2:+3038243 | Msa0230820:CDS |
| AGGAGGAGGAAGATGGAGAG+GGG | 0.388799 | 2_2:+3041094 | Msa0230820:CDS |
| TCCTGTTAATCCAGAAGCTC+TGG | 0.395506 | 2_2:+3038440 | Msa0230820:CDS |
| ACAGGGTTGGTGTTACCCTT+TGG | 0.398248 | 2_2:-3037701 | None:intergenic |
| TAACGATGTGCGGTACATTT+GGG | 0.405692 | 2_2:+3039059 | Msa0230820:CDS |
| GGAGGAGGAGGAAGATGGAG+AGG | 0.408387 | 2_2:+3041092 | Msa0230820:CDS |
| TTTCCAGTCCATGTTGCTGC+TGG | 0.413771 | 2_2:-3038015 | None:intergenic |
| GGAGGAGGAAGATGGAGAGG+GGG | 0.414341 | 2_2:+3041095 | Msa0230820:CDS |
| CCTCCTCTTCCGCATCCTCT+GGG | 0.423748 | 2_2:-3041074 | None:intergenic |
| TGGCCCAGAGGATGCGGAAG+AGG | 0.429207 | 2_2:+3041071 | Msa0230820:CDS |
| TAAAGGAGAGGTGACGAAGA+TGG | 0.431952 | 2_2:+3040963 | Msa0230820:CDS |
| GTCAAACACAGATGAATTGC+TGG | 0.439773 | 2_2:+3040915 | Msa0230820:CDS |
| GAATGACAAGTATATGAATT+CGG | 0.440504 | 2_2:+3039026 | Msa0230820:CDS |
| GAAGAGGAGGAGGAGGAAGA+TGG | 0.448405 | 2_2:+3041087 | Msa0230820:CDS |
| AGAGGATGCGGAAGAGGAGG+AGG | 0.454000 | 2_2:+3041077 | Msa0230820:CDS |
| TGAAGTACTGGGCCGCTGCT+GGG | 0.460482 | 2_2:+3039154 | Msa0230820:CDS |
| TGAATAATTTCAGAGGAAAT+CGG | 0.462279 | 2_2:-3038187 | None:intergenic |
| GAAGCCTTCAATTCAATTCA+CGG | 0.462835 | 2_2:-3037216 | None:intergenic |
| GGAGATGTTGATGATGATAA+AGG | 0.463074 | 2_2:+3040946 | Msa0230820:CDS |
| GAGGAGGAGGAAGATGGAGA+GGG | 0.463131 | 2_2:+3041093 | Msa0230820:CDS |
| CATAAAGATTAAGTCTTCAA+AGG | 0.463907 | 2_2:+3038126 | Msa0230820:CDS |
| ATTTAGTCTTATTTGGAGTA+GGG | 0.464436 | 2_2:-3041602 | None:intergenic |
| AATTCGTGCTTATTATATCT+GGG | 0.465954 | 2_2:-3038241 | None:intergenic |
| GAAGCACCAAATTTCAGATC+AGG | 0.466519 | 2_2:-3038085 | None:intergenic |
| CTTCCGCATCCTCTGGGCCA+TGG | 0.468488 | 2_2:-3041068 | None:intergenic |
| GATATTGCACTTTCTGGTGA+TGG | 0.468563 | 2_2:+3039613 | Msa0230820:CDS |
| ACGATAGTCACAACAATAGT+TGG | 0.468574 | 2_2:+3041693 | Msa0230820:three_prime_UTR |
| GTTGAGTTGAGTTGAGTTGA+GGG | 0.472439 | 2_2:-3037311 | None:intergenic |
| TGGAACCTTGGCAGAGGAAT+CGG | 0.475229 | 2_2:+3041182 | Msa0230820:CDS |
| GTCAATGAAGTTGATGATGA+TGG | 0.475846 | 2_2:+3041030 | Msa0230820:CDS |
| AATTTAGTCTTATTTGGAGT+AGG | 0.481712 | 2_2:-3041603 | None:intergenic |
| TGGATTAACAGGAACATTGA+AGG | 0.484715 | 2_2:-3038430 | None:intergenic |
| AAAGCGCCGTAGGAGGGAAC+GGG | 0.489652 | 2_2:+3040187 | Msa0230820:CDS |
| GTCACCGTGAATTGAATTGA+AGG | 0.490954 | 2_2:+3037212 | Msa0230820:five_prime_UTR |
| AGCACAAACACAGTGGTTGT+TGG | 0.491502 | 2_2:+3037619 | Msa0230820:five_prime_UTR |
| TGTTATAAGTATAACAATAA+GGG | 0.492668 | 2_2:+3039087 | Msa0230820:CDS |
| GGATGCGGAAGAGGAGGAGG+AGG | 0.494837 | 2_2:+3041080 | Msa0230820:CDS |
| CTTTCTGGTGATGGAAAAGC+AGG | 0.502354 | 2_2:+3039622 | Msa0230820:CDS |
| ATTCACGGTGACGGTGGCGG+AGG | 0.502434 | 2_2:-3037201 | None:intergenic |
| ATTTAAAACGAGATCGAAGA+AGG | 0.502937 | 2_2:+3037155 | Msa0230820:five_prime_UTR |
| AAATTATTCACCCGAAAGAA+AGG | 0.502938 | 2_2:+3038200 | Msa0230820:CDS |
| CGCAAACGTGGTCATAAGAA+AGG | 0.505508 | 2_2:+3037674 | Msa0230820:CDS |
| GAGAATGACCGAATTGCAAA+AGG | 0.506571 | 2_2:+3040212 | Msa0230820:CDS |
| GGTTCCATCCTTAAATCCGT+TGG | 0.508502 | 2_2:+3037899 | Msa0230820:CDS |
| AGTTGAGTTGAGTTGAGTTG+AGG | 0.510969 | 2_2:-3037312 | None:intergenic |
| TCCACAAGTCTCAGCTCATC+CGG | 0.512696 | 2_2:+3041917 | Msa0230820:three_prime_UTR |
| AAAGTTCCAACACACCATTA+AGG | 0.514193 | 2_2:-3038272 | None:intergenic |
| TTATACAGTGAACAACCAAA+AGG | 0.516612 | 2_2:+3039177 | Msa0230820:CDS |
| ATTGGAATGTTGATCGGTAC+CGG | 0.516797 | 2_2:-3037855 | None:intergenic |
| CCCATGCTTTCAAGTTTGTG+TGG | 0.520002 | 2_2:+3041441 | Msa0230820:CDS |
| AACTTCCGATTCCTCTGCCA+AGG | 0.520528 | 2_2:-3041187 | None:intergenic |
| CATAAGAAAGGAAGACCAAA+GGG | 0.521660 | 2_2:+3037686 | Msa0230820:CDS |
| GAACCATGGCCCAGAGGATG+CGG | 0.521717 | 2_2:+3041065 | Msa0230820:CDS |
| TTTAAGGCATGGTGGAACCT+TGG | 0.523016 | 2_2:+3041170 | Msa0230820:CDS |
| TAAAGCGCCGTAGGAGGGAA+CGG | 0.524825 | 2_2:+3040186 | Msa0230820:CDS |
| TCTTGTACAGATTATAAGGA+AGG | 0.525545 | 2_2:+3038383 | Msa0230820:intron |
| CCCAGAGGATGCGGAAGAGG+AGG | 0.527506 | 2_2:+3041074 | Msa0230820:CDS |
| GGTGCTTCATATAAGAAAGC+TGG | 0.528292 | 2_2:+3038100 | Msa0230820:CDS |
| TCAATTCACGGTGACGGTGG+CGG | 0.528730 | 2_2:-3037204 | None:intergenic |
| GTGACGGTGGCGGAGGGACA+AGG | 0.529354 | 2_2:-3037194 | None:intergenic |
| TAGCCAGCAGCAACATGGAC+TGG | 0.530294 | 2_2:+3038012 | Msa0230820:CDS |
| GGGTCTGCTAGCAATAATCA+TGG | 0.531485 | 2_2:+3040242 | Msa0230820:CDS |
| TGAGTTGAGTTGAGTTGAGG+GGG | 0.532004 | 2_2:-3037309 | None:intergenic |
| CCACACAAACTTGAAAGCAT+GGG | 0.534397 | 2_2:-3041441 | None:intergenic |
| TGAAGGTGCATCAGATGAGT+TGG | 0.534517 | 2_2:-3037969 | None:intergenic |
| TCCACACAAACTTGAAAGCA+TGG | 0.537766 | 2_2:-3041442 | None:intergenic |
| GATTTAAGGATGGAACCATC+AGG | 0.538308 | 2_2:-3037893 | None:intergenic |
| GGAAGATAACAACTCTGGAA+TGG | 0.538777 | 2_2:+3037811 | Msa0230820:CDS |
| ACTTCATGCCTCCCATCAGA+AGG | 0.540698 | 2_2:-3041009 | None:intergenic |
| GGATTAACAGGAACATTGAA+GGG | 0.542504 | 2_2:-3038429 | None:intergenic |
| AGTAAGGAAGATAACAACTC+TGG | 0.542767 | 2_2:+3037806 | Msa0230820:CDS |
| TTCAATTCAATTCACGGTGA+CGG | 0.545034 | 2_2:-3037210 | None:intergenic |
| CGATATCATTGATACACCAA+TGG | 0.545653 | 2_2:+3038972 | Msa0230820:CDS |
| TTGGCAGAGGAATCGGAAGT+TGG | 0.545674 | 2_2:+3041189 | Msa0230820:CDS |
| CTTCACCTTAACGCGTCCAA+CGG | 0.545923 | 2_2:-3037915 | None:intergenic |
| GCCTCCCATCAGAAGGGCTA+CGG | 0.547402 | 2_2:-3041002 | None:intergenic |
| CATATAGTTCCAAAATCCAT+TGG | 0.551577 | 2_2:-3038988 | None:intergenic |
| GTGTGCTAAAGCGCCGTAGG+AGG | 0.553382 | 2_2:+3040180 | Msa0230820:CDS |
| GCTCAAGACATCGAAAATGT+TGG | 0.554015 | 2_2:+3037937 | Msa0230820:CDS |
| TGAGCTGAGACTTGTGGACA+TGG | 0.557483 | 2_2:-3041912 | None:intergenic |
| GATGAATTGCTGGGTACTGA+TGG | 0.558606 | 2_2:+3040925 | Msa0230820:CDS |
| CACAACAATAGTTGGAGCAA+TGG | 0.561739 | 2_2:+3041701 | Msa0230820:three_prime_UTR |
| GAACAACCAAAAGGGAGCAC+AGG | 0.561861 | 2_2:+3039186 | Msa0230820:CDS |
| CCTGTTAATCCAGAAGCTCT+GGG | 0.561922 | 2_2:+3038441 | Msa0230820:CDS |
| TCCATGCTTGTAGAGAGTCC+CGG | 0.563514 | 2_2:+3040877 | Msa0230820:CDS |
| TTTATATTCATCATGAAAAG+CGG | 0.566483 | 2_2:-3041220 | None:intergenic |
| TGATCGGTACCGGTGGAAGA+AGG | 0.567122 | 2_2:-3037845 | None:intergenic |
| ATTTCAGAGGAAATCGGCAA+AGG | 0.569246 | 2_2:-3038181 | None:intergenic |
| TGGTGATGGAAAAGCAGGAA+AGG | 0.571057 | 2_2:+3039627 | Msa0230820:CDS |
| ACCGGATGAGCTGAGACTTG+TGG | 0.571091 | 2_2:-3041918 | None:intergenic |
| GGAACCATCAGGATTTATGT+TGG | 0.571200 | 2_2:-3037882 | None:intergenic |
| TGACAACGAATCTTCCCCAC+CGG | 0.572344 | 2_2:-3040896 | None:intergenic |
| AAGGTTTACAGTTACAGGGT+TGG | 0.572926 | 2_2:-3037714 | None:intergenic |
| ACCGGGACTCTCTACAAGCA+TGG | 0.574620 | 2_2:-3040878 | None:intergenic |
| TTCACGGTGACGGTGGCGGA+GGG | 0.575543 | 2_2:-3037200 | None:intergenic |
| TATACAGTGAACAACCAAAA+GGG | 0.575875 | 2_2:+3039178 | Msa0230820:CDS |
| TCTCCTCCCGTTCCCTCCTA+CGG | 0.576188 | 2_2:-3040193 | None:intergenic |
| CTTTGGTGTATTAGCGAGTG+CGG | 0.579470 | 2_2:-3041504 | None:intergenic |
| GAAGGTGCATCAGATGAGTT+GGG | 0.580712 | 2_2:-3037968 | None:intergenic |
| CACACAAACTTGAAAGCATG+GGG | 0.582062 | 2_2:-3041440 | None:intergenic |
| GTTGACACACCTTCTTCCAC+CGG | 0.582069 | 2_2:+3037836 | Msa0230820:CDS |
| TATAAAACAACTCAACAAGA+AGG | 0.582554 | 2_2:+3041237 | Msa0230820:CDS |
| AGTTGATGATGATGGGATGG+AGG | 0.582716 | 2_2:+3041038 | Msa0230820:CDS |
| AAGAACCGTAGCCCTTCTGA+TGG | 0.583532 | 2_2:+3040997 | Msa0230820:CDS |
| GAGGGACAAGGCGACGCCGT+CGG | 0.588442 | 2_2:-3037182 | None:intergenic |
| TTGTAAGGTTTACAGTTACA+GGG | 0.589989 | 2_2:-3037718 | None:intergenic |
| TCAATGAAGTTGATGATGAT+GGG | 0.591513 | 2_2:+3041031 | Msa0230820:CDS |
| GGTGATGGAAAAGCAGGAAA+GGG | 0.591615 | 2_2:+3039628 | Msa0230820:CDS |
| AATTCAATTCACGGTGACGG+TGG | 0.593349 | 2_2:-3037207 | None:intergenic |
| TTTAAAACGAGATCGAAGAA+GGG | 0.593835 | 2_2:+3037156 | Msa0230820:five_prime_UTR |
| GCTACGAGAGTTTAATGACT+AGG | 0.596741 | 2_2:+3041783 | Msa0230820:three_prime_UTR |
| TTTCGGGTGAATAATTTCAG+AGG | 0.598623 | 2_2:-3038194 | None:intergenic |
| TGTGCTAAAGCGCCGTAGGA+GGG | 0.599279 | 2_2:+3040181 | Msa0230820:CDS |
| AAGAGTAGCCAGCAGCAACA+TGG | 0.600252 | 2_2:+3038007 | Msa0230820:CDS |
| GGAAGAGATTGAAATGAACA+GGG | 0.601358 | 2_2:+3041125 | Msa0230820:CDS |
| CTTGCCAACATAAATCCTGA+TGG | 0.603062 | 2_2:+3037878 | Msa0230820:CDS |
| TGAAGTTGATGATGATGGGA+TGG | 0.604434 | 2_2:+3041035 | Msa0230820:CDS |
| TTTGTGTGCTAAAGCGCCGT+AGG | 0.607509 | 2_2:+3040177 | Msa0230820:CDS |
| GCGCCGTAGGAGGGAACGGG+AGG | 0.609232 | 2_2:+3040190 | Msa0230820:CDS |
| TTGAGTTGAGTTGAGTTGAG+GGG | 0.609328 | 2_2:-3037310 | None:intergenic |
| GGCAAGATTGGAATGTTGAT+CGG | 0.609659 | 2_2:-3037861 | None:intergenic |
| GTGCAGTTAGAAAACAAAGA+AGG | 0.611611 | 2_2:-3037287 | None:intergenic |
| TTAAAACGAGATCGAAGAAG+GGG | 0.612267 | 2_2:+3037157 | Msa0230820:five_prime_UTR |
| TCAAACACAGATGAATTGCT+GGG | 0.612920 | 2_2:+3040916 | Msa0230820:CDS |
| ATGGATGAAACTTTAAGGCA+TGG | 0.614031 | 2_2:+3041159 | Msa0230820:CDS |
| TTATTATATCTGGGATTAAG+CGG | 0.615194 | 2_2:-3038232 | None:intergenic |
| TGCTTGTAGAGAGTCCCGGT+GGG | 0.615999 | 2_2:+3040881 | Msa0230820:CDS |
| TATCGTACATTCAGAAGTGA+AGG | 0.618131 | 2_2:-3041676 | None:intergenic |
| GCATGGTGGAACCTTGGCAG+AGG | 0.619280 | 2_2:+3041176 | Msa0230820:CDS |
| TCATAAGAAAGGAAGACCAA+AGG | 0.623929 | 2_2:+3037685 | Msa0230820:CDS |
| ACTACCAATATCAAAAGCAG+AGG | 0.625733 | 2_2:-3037786 | None:intergenic |
| AGAACCGTAGCCCTTCTGAT+GGG | 0.628962 | 2_2:+3040998 | Msa0230820:CDS |
| TTATATCTGGGATTAAGCGG+AGG | 0.629122 | 2_2:-3038229 | None:intergenic |
| ACAAGAAGGACAAGCTTTAG+GGG | 0.629640 | 2_2:+3041251 | Msa0230820:CDS |
| GATCGAAGAAGGGGTTCCGA+CGG | 0.630219 | 2_2:+3037166 | Msa0230820:five_prime_UTR |
| CTTCATGCCTCCCATCAGAA+GGG | 0.633181 | 2_2:-3041008 | None:intergenic |
| ACCGTAGCCCTTCTGATGGG+AGG | 0.633613 | 2_2:+3041001 | Msa0230820:CDS |
| GAACAGGGAGAAGAGACGCA+TGG | 0.635472 | 2_2:+3041140 | Msa0230820:CDS |
| GACAACGAATCTTCCCCACC+GGG | 0.635501 | 2_2:-3040895 | None:intergenic |
| TGGTAGAGACTTCAAGCAAG+AGG | 0.637034 | 2_2:+3040262 | Msa0230820:CDS |
| TAAAGGCGTTTCGATTGCGA+CGG | 0.638612 | 2_2:-3037248 | None:intergenic |
| GAAGAACTTTATGAAGTACT+GGG | 0.638761 | 2_2:+3039143 | Msa0230820:CDS |
| CAACATGGACTGGAAAGACA+TGG | 0.641197 | 2_2:+3038022 | Msa0230820:CDS |
| TTATCAGTATCACTCTGTGA+AGG | 0.642263 | 2_2:-3037986 | None:intergenic |
| AATAGTCAGTCTGTGTGGAG+TGG | 0.643016 | 2_2:+3041480 | Msa0230820:CDS |
| GATGGAAAAGCAGGAAAGGG+TGG | 0.645811 | 2_2:+3039631 | Msa0230820:CDS |
| GCGTCCAACGGATTTAAGGA+TGG | 0.649948 | 2_2:-3037903 | None:intergenic |
| CAATAAGGGTGACTATATCG+TGG | 0.652140 | 2_2:+3039101 | Msa0230820:CDS |
| TAGAAGATGAAGCGCAAACG+TGG | 0.657445 | 2_2:+3037662 | Msa0230820:exon |
| GTTCCAACACACCATTAAGG+AGG | 0.672143 | 2_2:-3038269 | None:intergenic |
| TGTTGATGATGATAAAGGAG+AGG | 0.673385 | 2_2:+3040951 | Msa0230820:CDS |
| GCTTGTAGAGAGTCCCGGTG+GGG | 0.674070 | 2_2:+3040882 | Msa0230820:CDS |
| TTCACTGTATAACCCAGCAG+CGG | 0.686321 | 2_2:-3039166 | None:intergenic |
| ATGCTTGTAGAGAGTCCCGG+TGG | 0.687009 | 2_2:+3040880 | Msa0230820:CDS |
| GGAAGAGAACCATGGCCCAG+AGG | 0.689105 | 2_2:+3041059 | Msa0230820:CDS |
| GGAATGTTGATCGGTACCGG+TGG | 0.689108 | 2_2:-3037852 | None:intergenic |
| CCAGCAACAGAAGAAGCACA+AGG | 0.690190 | 2_2:+3041275 | Msa0230820:CDS |
| GATGAAACTTTAAGGCATGG+TGG | 0.691320 | 2_2:+3041162 | Msa0230820:CDS |
| TGACAAGTATATGAATTCGG+AGG | 0.697902 | 2_2:+3039029 | Msa0230820:CDS |
| TCTCACTAGTTCAATTCACG+CGG | 0.705120 | 2_2:+3041536 | Msa0230820:CDS |
| AGGATGTCTATAACGATGTG+CGG | 0.713282 | 2_2:+3039049 | Msa0230820:CDS |
| GGGATGGAGGAAGAGAACCA+TGG | 0.740806 | 2_2:+3041051 | Msa0230820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTTTTTTTAATAAT+TGG | + | chr2_2:3041881-3041900 | Msa0230820:three_prime_UTR | 0.0% |
| !!! | TTATTTTTTTTTTAATAATT+GGG | + | chr2_2:3041882-3041901 | Msa0230820:three_prime_UTR | 0.0% |
| !! | TTATGACATTAATATATTAT+CGG | - | chr2_2:3040057-3040076 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAATATGCAT+TGG | + | chr2_2:3040629-3040648 | Msa0230820:intron | 10.0% |
| !!! | TAAAAAAATTTAGTCTTATT+TGG | - | chr2_2:3041612-3041631 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTAATAATTGG+GGG | + | chr2_2:3041884-3041903 | Msa0230820:three_prime_UTR | 10.0% |
| !! | TGTTATAAGTATAACAATAA+GGG | + | chr2_2:3039087-3039106 | Msa0230820:CDS | 15.0% |
| !! | TAAAAATATTACTTTAGCAA+TGG | - | chr2_2:3039733-3039752 | None:intergenic | 15.0% |
| !!! | TGCTAAAGTAATATTTTTAA+TGG | + | chr2_2:3039734-3039753 | Msa0230820:intron | 15.0% |
| !! | ATTAAAAAAAAATCTCTTGT+TGG | + | chr2_2:3039785-3039804 | Msa0230820:intron | 15.0% |
| !!! | TTATTTGAGATTTATAAACA+AGG | - | chr2_2:3039927-3039946 | None:intergenic | 15.0% |
| !! | ATAAATCTCAAATAAGATAA+AGG | + | chr2_2:3039932-3039951 | Msa0230820:intron | 15.0% |
| !! | TAAATCTCAAATAAGATAAA+GGG | + | chr2_2:3039933-3039952 | Msa0230820:intron | 15.0% |
| !!! | TCATTTTGTGTTTTTTTTTT+TGG | + | chr2_2:3041736-3041755 | Msa0230820:three_prime_UTR | 15.0% |
| !!! | CATTTTGTGTTTTTTTTTTT+GGG | + | chr2_2:3041737-3041756 | Msa0230820:three_prime_UTR | 15.0% |
| !!! | ATTTTGTGTTTTTTTTTTTG+GGG | + | chr2_2:3041738-3041757 | Msa0230820:three_prime_UTR | 15.0% |
| !! | ATTTATGCAATTGAAATTTG+AGG | - | chr2_2:3037367-3037386 | None:intergenic | 20.0% |
| !! | CAAATTTCAATTGCATAAAT+TGG | + | chr2_2:3037367-3037386 | Msa0230820:intron | 20.0% |
| !! | GTTAAAAAAAACACAAAAGA+AGG | - | chr2_2:3037485-3037504 | None:intergenic | 20.0% |
| !!! | AAAGATCAAATTTTTTAGAG+TGG | - | chr2_2:3037522-3037541 | None:intergenic | 20.0% |
| !! | ACTTAAATGTTAATACTTAC+AGG | - | chr2_2:3038471-3038490 | None:intergenic | 20.0% |
| !! | AAGAAAACAAAATACTGAAA+AGG | - | chr2_2:3038609-3038628 | None:intergenic | 20.0% |
| !! | CTGTTATAAGTATAACAATA+AGG | + | chr2_2:3039086-3039105 | Msa0230820:CDS | 20.0% |
| !!! | GATTATGACTAGTTAAAAAT+AGG | - | chr2_2:3039363-3039382 | None:intergenic | 20.0% |
| !! | TTAGTATTTCTCTTTATATG+TGG | - | chr2_2:3039391-3039410 | None:intergenic | 20.0% |
| !! | ACTAATGTAACGAAAAAATT+CGG | + | chr2_2:3039406-3039425 | Msa0230820:intron | 20.0% |
| !! | TATATCAAATTTATGGAAAC+AGG | - | chr2_2:3039879-3039898 | None:intergenic | 20.0% |
| !! | TAAAAGAAAAATAGACTATC+AGG | - | chr2_2:3039904-3039923 | None:intergenic | 20.0% |
| !!! | TTTTAGTTCATTTGTAAACT+TGG | + | chr2_2:3040019-3040038 | Msa0230820:intron | 20.0% |
| !! | TAACTTAGAATAGAATATCA+CGG | + | chr2_2:3040461-3040480 | Msa0230820:intron | 20.0% |
| !!! | CATGTAACTAAACATTATTT+TGG | - | chr2_2:3040678-3040697 | None:intergenic | 20.0% |
| !! | GAAATTCATTAGTAGATATA+TGG | + | chr2_2:3040817-3040836 | Msa0230820:intron | 20.0% |
| !!! | TTTACTTTATCTTGTTTCAA+AGG | + | chr2_2:3040852-3040871 | Msa0230820:intron | 20.0% |
| !! | TTTATATTCATCATGAAAAG+CGG | - | chr2_2:3041223-3041242 | None:intergenic | 20.0% |
| !!! | TTTTGTGTTTTTTTTTTTGG+GGG | + | chr2_2:3041739-3041758 | Msa0230820:three_prime_UTR | 20.0% |
| ! | GAATAAAATTCGTTCGTTAA+AGG | - | chr2_2:3037268-3037287 | None:intergenic | 25.0% |
| ! | AACGTAAAGGAATAAACTTT+AGG | - | chr2_2:3037402-3037421 | None:intergenic | 25.0% |
| !!! | ATTTATGCTGCATTGTTTTT+TGG | + | chr2_2:3037553-3037572 | Msa0230820:intron | 25.0% |
| ! | CATAAAGATTAAGTCTTCAA+AGG | + | chr2_2:3038126-3038145 | Msa0230820:CDS | 25.0% |
| !! | ATTAAGTCTTCAAAGGTTTT+GGG | + | chr2_2:3038133-3038152 | Msa0230820:CDS | 25.0% |
| ! | TGAATAATTTCAGAGGAAAT+CGG | - | chr2_2:3038190-3038209 | None:intergenic | 25.0% |
| !! | TTATTATATCTGGGATTAAG+CGG | - | chr2_2:3038235-3038254 | None:intergenic | 25.0% |
| ! | AATTCGTGCTTATTATATCT+GGG | - | chr2_2:3038244-3038263 | None:intergenic | 25.0% |
| !! | GGTAATGAGTAATTTTCTTT+TGG | + | chr2_2:3038344-3038363 | Msa0230820:intron | 25.0% |
| !! | GTTTTCTTGTACAGATTATA+AGG | + | chr2_2:3038379-3038398 | Msa0230820:intron | 25.0% |
| ! | TATAAGGAAGGTAATGAAAA+TGG | + | chr2_2:3038395-3038414 | Msa0230820:CDS | 25.0% |
| !!! | ACATTTAAGTAACTTTTTCG+TGG | + | chr2_2:3038481-3038500 | Msa0230820:intron | 25.0% |
| !!! | TAACTTTTGCTTTTCATACA+TGG | - | chr2_2:3038695-3038714 | None:intergenic | 25.0% |
| !! | TATACTTGTCATTCTTTTCA+AGG | - | chr2_2:3039020-3039039 | None:intergenic | 25.0% |
| ! | GAATGACAAGTATATGAATT+CGG | + | chr2_2:3039026-3039045 | Msa0230820:CDS | 25.0% |
| ! | TCATTATGAAACTTCATCAA+TGG | - | chr2_2:3039234-3039253 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTCTAAACTTGAG+TGG | + | chr2_2:3039291-3039310 | Msa0230820:intron | 25.0% |
| ! | CTAGTTAAAAATAGGAAAAG+TGG | - | chr2_2:3039355-3039374 | None:intergenic | 25.0% |
| !! | TTCATTTATCTTTTTGGATC+AGG | + | chr2_2:3039571-3039590 | Msa0230820:intron | 25.0% |
| ! | AAGCATAAGAAAAAAAAGCA+TGG | + | chr2_2:3039661-3039680 | Msa0230820:CDS | 25.0% |
| !! | AGCATAAGAAAAAAAAGCAT+GGG | + | chr2_2:3039662-3039681 | Msa0230820:CDS | 25.0% |
| ! | TCAGGCATATATCAAATTTA+TGG | - | chr2_2:3039886-3039905 | None:intergenic | 25.0% |
| ! | CATTAATATATTATCGGCAT+AGG | - | chr2_2:3040051-3040070 | None:intergenic | 25.0% |
| ! | GCATGTAAACATTTCAAAAA+AGG | - | chr2_2:3040105-3040124 | None:intergenic | 25.0% |
| ! | CACATAAACAATCATGTTTA+TGG | - | chr2_2:3040154-3040173 | None:intergenic | 25.0% |
| !! | CAAAATTTCCTTTTGCAATT+CGG | - | chr2_2:3040223-3040242 | None:intergenic | 25.0% |
| !! | GAATTGCAAAAGGAAATTTT+GGG | + | chr2_2:3040222-3040241 | Msa0230820:CDS | 25.0% |
| !! | AAACATTGGAGTCAATTTTA+GGG | + | chr2_2:3040332-3040351 | Msa0230820:intron | 25.0% |
| ! | AGATTCTTGATTGAAATGAT+CGG | + | chr2_2:3040379-3040398 | Msa0230820:intron | 25.0% |
| ! | TATAAAACAACTCAACAAGA+AGG | + | chr2_2:3041237-3041256 | Msa0230820:CDS | 25.0% |
| ! | TAATGATTCTATGTGTTTGT+AGG | + | chr2_2:3041362-3041381 | Msa0230820:intron | 25.0% |
| !! | AGCTTTTTGATGTTTATCTT+GGG | - | chr2_2:3041391-3041410 | None:intergenic | 25.0% |
| !! | TAGCTTTTTGATGTTTATCT+TGG | - | chr2_2:3041392-3041411 | None:intergenic | 25.0% |
| !!! | ATTTAGTCTTATTTGGAGTA+GGG | - | chr2_2:3041605-3041624 | None:intergenic | 25.0% |
| !!! | AATTTAGTCTTATTTGGAGT+AGG | - | chr2_2:3041606-3041625 | None:intergenic | 25.0% |
| !!! | GATTTTAGAATTGTAGTTGA+TGG | + | chr2_2:3041653-3041672 | Msa0230820:three_prime_UTR | 25.0% |
| !!! | TTTGTGTTTTTTTTTTTGGG+GGG | + | chr2_2:3041740-3041759 | Msa0230820:three_prime_UTR | 25.0% |
| ! | ATTTAAAACGAGATCGAAGA+AGG | + | chr2_2:3037155-3037174 | Msa0230820:five_prime_UTR | 30.0% |
| ! | TTTAAAACGAGATCGAAGAA+GGG | + | chr2_2:3037156-3037175 | Msa0230820:five_prime_UTR | 30.0% |
| ATAGAACGAATTGAACGTAA+AGG | - | chr2_2:3037415-3037434 | None:intergenic | 30.0% | |
| TCAATTCGTTCTATTCTCTT+TGG | + | chr2_2:3037421-3037440 | Msa0230820:intron | 30.0% | |
| ! | AAACACACATAAAAAGCACA+TGG | + | chr2_2:3037444-3037463 | Msa0230820:intron | 30.0% |
| ! | AACACACATAAAAAGCACAT+GGG | + | chr2_2:3037445-3037464 | Msa0230820:intron | 30.0% |
| TTGTAAGGTTTACAGTTACA+GGG | - | chr2_2:3037721-3037740 | None:intergenic | 30.0% | |
| TTTGTAAGGTTTACAGTTAC+AGG | - | chr2_2:3037722-3037741 | None:intergenic | 30.0% | |
| ! | CTTCAACTTGTTCATTTGTA+AGG | - | chr2_2:3037736-3037755 | None:intergenic | 30.0% |
| !! | TGCTTTTGATATTGGTAGTA+AGG | + | chr2_2:3037790-3037809 | Msa0230820:CDS | 30.0% |
| ! | GATTAAGTCTTCAAAGGTTT+TGG | + | chr2_2:3038132-3038151 | Msa0230820:CDS | 30.0% |
| AAATTATTCACCCGAAAGAA+AGG | + | chr2_2:3038200-3038219 | Msa0230820:CDS | 30.0% | |
| CAATTCGTGCTTATTATATC+TGG | - | chr2_2:3038245-3038264 | None:intergenic | 30.0% | |
| CAGATATAATAAGCACGAAT+TGG | + | chr2_2:3038243-3038262 | Msa0230820:CDS | 30.0% | |
| CTAGGACAAAAGAAAACTAA+AGG | - | chr2_2:3038309-3038328 | None:intergenic | 30.0% | |
| ! | CTTTTGTCCTAGCATTATAA+TGG | + | chr2_2:3038317-3038336 | Msa0230820:intron | 30.0% |
| !! | TCCTAGCATTATAATGGATT+CGG | + | chr2_2:3038323-3038342 | Msa0230820:intron | 30.0% |
| TCTTGTACAGATTATAAGGA+AGG | + | chr2_2:3038383-3038402 | Msa0230820:intron | 30.0% | |
| AAAAGGTTGAAAACAGGTTT+AGG | - | chr2_2:3038592-3038611 | None:intergenic | 30.0% | |
| ATACTGAAAAGGTTGAAAAC+AGG | - | chr2_2:3038598-3038617 | None:intergenic | 30.0% | |
| AAAAGAATAGATGATCGACT+GGG | - | chr2_2:3038644-3038663 | None:intergenic | 30.0% | |
| !! | TTTTGCTTTTCATACATGGT+GGG | - | chr2_2:3038691-3038710 | None:intergenic | 30.0% |
| !! | ATTGATACACCAATGGATTT+TGG | + | chr2_2:3038979-3038998 | Msa0230820:CDS | 30.0% |
| CATATAGTTCCAAAATCCAT+TGG | - | chr2_2:3038991-3039010 | None:intergenic | 30.0% | |
| AGAAGAACTTTATGAAGTAC+TGG | + | chr2_2:3039142-3039161 | Msa0230820:CDS | 30.0% | |
| ! | GAAGAACTTTATGAAGTACT+GGG | + | chr2_2:3039143-3039162 | Msa0230820:CDS | 30.0% |
| TTATACAGTGAACAACCAAA+AGG | + | chr2_2:3039177-3039196 | Msa0230820:CDS | 30.0% | |
| TATACAGTGAACAACCAAAA+GGG | + | chr2_2:3039178-3039197 | Msa0230820:CDS | 30.0% | |
| AACGAAAAAATTCGGAAAGA+CGG | + | chr2_2:3039414-3039433 | Msa0230820:intron | 30.0% | |
| !!! | TTCTACTTTTTCATGTATCC+TGG | + | chr2_2:3039439-3039458 | Msa0230820:intron | 30.0% |
| !!! | CCTGGTTTATTTTGTATCTT+CGG | + | chr2_2:3039457-3039476 | Msa0230820:intron | 30.0% |
| !!! | GTTTATTTTGTATCTTCGGA+GGG | + | chr2_2:3039461-3039480 | Msa0230820:intron | 30.0% |
| !!! | TTTATTTTGTATCTTCGGAG+GGG | + | chr2_2:3039462-3039481 | Msa0230820:intron | 30.0% |
| GAGTAGTATCTTACATGAAA+TGG | - | chr2_2:3039524-3039543 | None:intergenic | 30.0% | |
| ATCTATTAGCGAACTTGTAT+TGG | - | chr2_2:3039842-3039861 | None:intergenic | 30.0% | |
| ! | TTTTAGACAACTTATGCTGA+AGG | - | chr2_2:3039993-3040012 | None:intergenic | 30.0% |
| ! | CGAATTGCAAAAGGAAATTT+TGG | + | chr2_2:3040221-3040240 | Msa0230820:CDS | 30.0% |
| AAATAGATCCCTTGAAACAT+TGG | + | chr2_2:3040318-3040337 | Msa0230820:intron | 30.0% | |
| ! | AATTGACTCCAATGTTTCAA+GGG | - | chr2_2:3040329-3040348 | None:intergenic | 30.0% |
| ! | AAATTGACTCCAATGTTTCA+AGG | - | chr2_2:3040330-3040349 | None:intergenic | 30.0% |
| ! | GAAACATTGGAGTCAATTTT+AGG | + | chr2_2:3040331-3040350 | Msa0230820:intron | 30.0% |
| ! | GCATATATCATGTTTCTATG+TGG | + | chr2_2:3040354-3040373 | Msa0230820:intron | 30.0% |
| TTAGTGAATAAGAAGAACCA+GGG | - | chr2_2:3040439-3040458 | None:intergenic | 30.0% | |
| TTTAGTGAATAAGAAGAACC+AGG | - | chr2_2:3040440-3040459 | None:intergenic | 30.0% | |
| AGAATAGAATATCACGGAAT+TGG | + | chr2_2:3040467-3040486 | Msa0230820:intron | 30.0% | |
| TCATTATAAGAAACAAGAGC+AGG | - | chr2_2:3040799-3040818 | None:intergenic | 30.0% | |
| !! | TCAATGAAGTTGATGATGAT+GGG | + | chr2_2:3041031-3041050 | Msa0230820:CDS | 30.0% |
| ! | GCTTTTTGATGTTTATCTTG+GGG | - | chr2_2:3041390-3041409 | None:intergenic | 30.0% |
| !!! | TTGTGTTTTTTTTTTTGGGG+GGG | + | chr2_2:3041741-3041760 | Msa0230820:three_prime_UTR | 30.0% |
| TTAAAACGAGATCGAAGAAG+GGG | + | chr2_2:3037157-3037176 | Msa0230820:five_prime_UTR | 35.0% | |
| TTCAATTCAATTCACGGTGA+CGG | - | chr2_2:3037213-3037232 | None:intergenic | 35.0% | |
| GAAGCCTTCAATTCAATTCA+CGG | - | chr2_2:3037219-3037238 | None:intergenic | 35.0% | |
| GTGCAGTTAGAAAACAAAGA+AGG | - | chr2_2:3037290-3037309 | None:intergenic | 35.0% | |
| !!! | TTTTTAGAGCACAAACACAG+TGG | + | chr2_2:3037612-3037631 | Msa0230820:intron | 35.0% |
| TCATAAGAAAGGAAGACCAA+AGG | + | chr2_2:3037685-3037704 | Msa0230820:CDS | 35.0% | |
| CATAAGAAAGGAAGACCAAA+GGG | + | chr2_2:3037686-3037705 | Msa0230820:CDS | 35.0% | |
| !! | GAAACCTCTGCTTTTGATAT+TGG | + | chr2_2:3037782-3037801 | Msa0230820:CDS | 35.0% |
| ACTACCAATATCAAAAGCAG+AGG | - | chr2_2:3037789-3037808 | None:intergenic | 35.0% | |
| AGTAAGGAAGATAACAACTC+TGG | + | chr2_2:3037806-3037825 | Msa0230820:CDS | 35.0% | |
| AGGATTTATGTTGGCAAGAT+TGG | - | chr2_2:3037876-3037895 | None:intergenic | 35.0% | |
| TTATCAGTATCACTCTGTGA+AGG | - | chr2_2:3037989-3038008 | None:intergenic | 35.0% | |
| ! | TCATTGCCTGATCTGAAATT+TGG | + | chr2_2:3038079-3038098 | Msa0230820:CDS | 35.0% |
| ! | TTTCGGGTGAATAATTTCAG+AGG | - | chr2_2:3038197-3038216 | None:intergenic | 35.0% |
| AAAGTTCCAACACACCATTA+AGG | - | chr2_2:3038275-3038294 | None:intergenic | 35.0% | |
| ACCGAATCCATTATAATGCT+AGG | - | chr2_2:3038327-3038346 | None:intergenic | 35.0% | |
| GGATTAACAGGAACATTGAA+GGG | - | chr2_2:3038432-3038451 | None:intergenic | 35.0% | |
| TGGATTAACAGGAACATTGA+AGG | - | chr2_2:3038433-3038452 | None:intergenic | 35.0% | |
| CAAAAGAATAGATGATCGAC+TGG | - | chr2_2:3038645-3038664 | None:intergenic | 35.0% | |
| !! | CTTTTGCTTTTCATACATGG+TGG | - | chr2_2:3038692-3038711 | None:intergenic | 35.0% |
| ATGCACACAATTTCTACAGA+AGG | - | chr2_2:3038754-3038773 | None:intergenic | 35.0% | |
| ATCTCTGCTTACTAAGAAAG+AGG | - | chr2_2:3038800-3038819 | None:intergenic | 35.0% | |
| TCGTCATTCTTTGTGAAACT+TGG | + | chr2_2:3038863-3038882 | Msa0230820:intron | 35.0% | |
| CAATGATATCGAAATAGTCC+TGG | - | chr2_2:3038963-3038982 | None:intergenic | 35.0% | |
| CGATATCATTGATACACCAA+TGG | + | chr2_2:3038972-3038991 | Msa0230820:CDS | 35.0% | |
| TGACAAGTATATGAATTCGG+AGG | + | chr2_2:3039029-3039048 | Msa0230820:CDS | 35.0% | |
| ! | CATCAATGGATTCTAGTACA+TGG | - | chr2_2:3039220-3039239 | None:intergenic | 35.0% |
| CCGAAGATACAAAATAAACC+AGG | - | chr2_2:3039460-3039479 | None:intergenic | 35.0% | |
| !!! | GGTTTATTTTGTATCTTCGG+AGG | + | chr2_2:3039460-3039479 | Msa0230820:intron | 35.0% |
| TCAGAAGATCATGCAAAAGT+TGG | - | chr2_2:3039488-3039507 | None:intergenic | 35.0% | |
| TCATGTAAGATACTACTCCA+TGG | + | chr2_2:3039526-3039545 | Msa0230820:intron | 35.0% | |
| ! | CATGGTTTTCTGATATCGTT+GGG | + | chr2_2:3039544-3039563 | Msa0230820:intron | 35.0% |
| ! | ATGGTTTTCTGATATCGTTG+GGG | + | chr2_2:3039545-3039564 | Msa0230820:intron | 35.0% |
| !! | GGGGTGTTCATTTATCTTTT+TGG | + | chr2_2:3039565-3039584 | Msa0230820:intron | 35.0% |
| ACAGAAGATATTGCACTTTC+TGG | + | chr2_2:3039607-3039626 | Msa0230820:CDS | 35.0% | |
| !! | AAAGAGAAGCCTTTGACTTT+TGG | + | chr2_2:3039956-3039975 | Msa0230820:intron | 35.0% |
| !! | AAGAGAAGCCTTTGACTTTT+GGG | + | chr2_2:3039957-3039976 | Msa0230820:intron | 35.0% |
| ATGCAATTCCCAAAAGTCAA+AGG | - | chr2_2:3039968-3039987 | None:intergenic | 35.0% | |
| !!! | TCAAGCAAGAGGTATTTTAG+TGG | + | chr2_2:3040273-3040292 | Msa0230820:intron | 35.0% |
| TAGTGAATAAGAAGAACCAG+GGG | - | chr2_2:3040438-3040457 | None:intergenic | 35.0% | |
| ACCAACAAACCAATCAAAGT+GGG | - | chr2_2:3040517-3040536 | None:intergenic | 35.0% | |
| !! | TTTGATTGGTTTGTTGGTGT+TGG | + | chr2_2:3040519-3040538 | Msa0230820:intron | 35.0% |
| TGTTCAATTTCTGTTGCCTT+CGG | + | chr2_2:3040714-3040733 | Msa0230820:intron | 35.0% | |
| TCAAACACAGATGAATTGCT+GGG | + | chr2_2:3040916-3040935 | Msa0230820:CDS | 35.0% | |
| !! | GGAGATGTTGATGATGATAA+AGG | + | chr2_2:3040946-3040965 | Msa0230820:CDS | 35.0% |
| !! | TGTTGATGATGATAAAGGAG+AGG | + | chr2_2:3040951-3040970 | Msa0230820:CDS | 35.0% |
| !! | GTCAATGAAGTTGATGATGA+TGG | + | chr2_2:3041030-3041049 | Msa0230820:CDS | 35.0% |
| AGGAAGAGATTGAAATGAAC+AGG | + | chr2_2:3041124-3041143 | Msa0230820:CDS | 35.0% | |
| GGAAGAGATTGAAATGAACA+GGG | + | chr2_2:3041125-3041144 | Msa0230820:CDS | 35.0% | |
| !! | ATGGATGAAACTTTAAGGCA+TGG | + | chr2_2:3041159-3041178 | Msa0230820:CDS | 35.0% |
| AACAAGAAGGACAAGCTTTA+GGG | + | chr2_2:3041250-3041269 | Msa0230820:CDS | 35.0% | |
| !! | GCATATTTGTTGTTGCAGTA+TGG | + | chr2_2:3041335-3041354 | Msa0230820:intron | 35.0% |
| !!! | ACACAGACTGACTATTTTTG+GGG | - | chr2_2:3041476-3041495 | None:intergenic | 35.0% |
| !! | CACACAGACTGACTATTTTT+GGG | - | chr2_2:3041477-3041496 | None:intergenic | 35.0% |
| ! | TAGTGAGAGCAGATTTTCTT+TGG | - | chr2_2:3041524-3041543 | None:intergenic | 35.0% |
| TATCGTACATTCAGAAGTGA+AGG | - | chr2_2:3041679-3041698 | None:intergenic | 35.0% | |
| ACGATAGTCACAACAATAGT+TGG | + | chr2_2:3041693-3041712 | Msa0230820:three_prime_UTR | 35.0% | |
| GTCACCGTGAATTGAATTGA+AGG | + | chr2_2:3037212-3037231 | Msa0230820:five_prime_UTR | 40.0% | |
| !! | TTGAGTTGAGTTGAGTTGAG+GGG | - | chr2_2:3037313-3037332 | None:intergenic | 40.0% |
| !! | GTTGAGTTGAGTTGAGTTGA+GGG | - | chr2_2:3037314-3037333 | None:intergenic | 40.0% |
| !! | AGTTGAGTTGAGTTGAGTTG+AGG | - | chr2_2:3037315-3037334 | None:intergenic | 40.0% |
| AAGGTTTACAGTTACAGGGT+TGG | - | chr2_2:3037717-3037736 | None:intergenic | 40.0% | |
| ! | GGAAGATAACAACTCTGGAA+TGG | + | chr2_2:3037811-3037830 | Msa0230820:CDS | 40.0% |
| ATTGGAATGTTGATCGGTAC+CGG | - | chr2_2:3037858-3037877 | None:intergenic | 40.0% | |
| GGCAAGATTGGAATGTTGAT+CGG | - | chr2_2:3037864-3037883 | None:intergenic | 40.0% | |
| CTTGCCAACATAAATCCTGA+TGG | + | chr2_2:3037878-3037897 | Msa0230820:CDS | 40.0% | |
| GGAACCATCAGGATTTATGT+TGG | - | chr2_2:3037885-3037904 | None:intergenic | 40.0% | |
| GATTTAAGGATGGAACCATC+AGG | - | chr2_2:3037896-3037915 | None:intergenic | 40.0% | |
| GCTCAAGACATCGAAAATGT+TGG | + | chr2_2:3037937-3037956 | Msa0230820:CDS | 40.0% | |
| ! | GAAGCACCAAATTTCAGATC+AGG | - | chr2_2:3038088-3038107 | None:intergenic | 40.0% |
| GGTGCTTCATATAAGAAAGC+TGG | + | chr2_2:3038100-3038119 | Msa0230820:CDS | 40.0% | |
| ATTTCAGAGGAAATCGGCAA+AGG | - | chr2_2:3038184-3038203 | None:intergenic | 40.0% | |
| ! | TTATATCTGGGATTAAGCGG+AGG | - | chr2_2:3038232-3038251 | None:intergenic | 40.0% |
| CGAATTGGATACCTCCTTAA+TGG | + | chr2_2:3038258-3038277 | Msa0230820:CDS | 40.0% | |
| ATACCTCCTTAATGGTGTGT+TGG | + | chr2_2:3038266-3038285 | Msa0230820:intron | 40.0% | |
| GTGTGTTGGAACTTTCGTAT+TGG | + | chr2_2:3038280-3038299 | Msa0230820:intron | 40.0% | |
| ! | TTTAGGACAGAAGTTGAGGT+AGG | - | chr2_2:3038575-3038594 | None:intergenic | 40.0% |
| CCATGGATGAACAAATGTCA+TGG | - | chr2_2:3038837-3038856 | None:intergenic | 40.0% | |
| CCATGACATTTGTTCATCCA+TGG | + | chr2_2:3038834-3038853 | Msa0230820:intron | 40.0% | |
| AAGAATGACGATAGTCTCCA+TGG | - | chr2_2:3038854-3038873 | None:intergenic | 40.0% | |
| AGGATGTCTATAACGATGTG+CGG | + | chr2_2:3039049-3039068 | Msa0230820:CDS | 40.0% | |
| ATAACGATGTGCGGTACATT+TGG | + | chr2_2:3039058-3039077 | Msa0230820:CDS | 40.0% | |
| TAACGATGTGCGGTACATTT+GGG | + | chr2_2:3039059-3039078 | Msa0230820:CDS | 40.0% | |
| CAATAAGGGTGACTATATCG+TGG | + | chr2_2:3039101-3039120 | Msa0230820:CDS | 40.0% | |
| CCAACGATATCAGAAAACCA+TGG | - | chr2_2:3039546-3039565 | None:intergenic | 40.0% | |
| ! | CCATGGTTTTCTGATATCGT+TGG | + | chr2_2:3039543-3039562 | Msa0230820:intron | 40.0% |
| ! | TGGTTTTCTGATATCGTTGG+GGG | + | chr2_2:3039546-3039565 | Msa0230820:intron | 40.0% |
| ! | GATATTGCACTTTCTGGTGA+TGG | + | chr2_2:3039613-3039632 | Msa0230820:CDS | 40.0% |
| GAGAATGACCGAATTGCAAA+AGG | + | chr2_2:3040212-3040231 | Msa0230820:CDS | 40.0% | |
| CAGGGGAAAAAACTCAAATC+AGG | - | chr2_2:3040421-3040440 | None:intergenic | 40.0% | |
| !!! | CTGATTTGAGTTTTTTCCCC+TGG | + | chr2_2:3040419-3040438 | Msa0230820:intron | 40.0% |
| TTGTTGCAACCCACTTTGAT+TGG | + | chr2_2:3040505-3040524 | Msa0230820:intron | 40.0% | |
| !! | ACCCACTTTGATTGGTTTGT+TGG | + | chr2_2:3040513-3040532 | Msa0230820:intron | 40.0% |
| CACCAACAAACCAATCAAAG+TGG | - | chr2_2:3040518-3040537 | None:intergenic | 40.0% | |
| ! | ATAAAGTCTGAGACCTTGAG+AGG | - | chr2_2:3040565-3040584 | None:intergenic | 40.0% |
| GAAGGCAACAGAAATTGAAC+AGG | - | chr2_2:3040715-3040734 | None:intergenic | 40.0% | |
| TCTGATCCAGACATTACATG+AGG | + | chr2_2:3040742-3040761 | Msa0230820:intron | 40.0% | |
| CTGATCCAGACATTACATGA+GGG | + | chr2_2:3040743-3040762 | Msa0230820:intron | 40.0% | |
| AAGAACCCTCATGTAATGTC+TGG | - | chr2_2:3040751-3040770 | None:intergenic | 40.0% | |
| GTCAAACACAGATGAATTGC+TGG | + | chr2_2:3040915-3040934 | Msa0230820:CDS | 40.0% | |
| !! | TGAAGTTGATGATGATGGGA+TGG | + | chr2_2:3041035-3041054 | Msa0230820:CDS | 40.0% |
| GACGCATGGATGAAACTTTA+AGG | + | chr2_2:3041154-3041173 | Msa0230820:CDS | 40.0% | |
| !! | GATGAAACTTTAAGGCATGG+TGG | + | chr2_2:3041162-3041181 | Msa0230820:CDS | 40.0% |
| CAACAAGAAGGACAAGCTTT+AGG | + | chr2_2:3041249-3041268 | Msa0230820:CDS | 40.0% | |
| ! | ACAAGAAGGACAAGCTTTAG+GGG | + | chr2_2:3041251-3041270 | Msa0230820:CDS | 40.0% |
| ! | CACACAAACTTGAAAGCATG+GGG | - | chr2_2:3041443-3041462 | None:intergenic | 40.0% |
| ! | CCACACAAACTTGAAAGCAT+GGG | - | chr2_2:3041444-3041463 | None:intergenic | 40.0% |
| TCCACACAAACTTGAAAGCA+TGG | - | chr2_2:3041445-3041464 | None:intergenic | 40.0% | |
| ! | CCACACAGACTGACTATTTT+TGG | - | chr2_2:3041478-3041497 | None:intergenic | 40.0% |
| CCAAAAATAGTCAGTCTGTG+TGG | + | chr2_2:3041475-3041494 | Msa0230820:CDS | 40.0% | |
| TCTCACTAGTTCAATTCACG+CGG | + | chr2_2:3041536-3041555 | Msa0230820:CDS | 40.0% | |
| CACAACAATAGTTGGAGCAA+TGG | + | chr2_2:3041701-3041720 | Msa0230820:three_prime_UTR | 40.0% | |
| GCTACGAGAGTTTAATGACT+AGG | + | chr2_2:3041783-3041802 | Msa0230820:three_prime_UTR | 40.0% | |
| ! | AATTCAATTCACGGTGACGG+TGG | - | chr2_2:3037210-3037229 | None:intergenic | 45.0% |
| !! | TAAAGGCGTTTCGATTGCGA+CGG | - | chr2_2:3037251-3037270 | None:intergenic | 45.0% |
| !! | TGAGTTGAGTTGAGTTGAGG+GGG | - | chr2_2:3037312-3037331 | None:intergenic | 45.0% |
| AGCACAAACACAGTGGTTGT+TGG | + | chr2_2:3037619-3037638 | Msa0230820:five_prime_UTR | 45.0% | |
| TAGAAGATGAAGCGCAAACG+TGG | + | chr2_2:3037662-3037681 | Msa0230820:exon | 45.0% | |
| CGCAAACGTGGTCATAAGAA+AGG | + | chr2_2:3037674-3037693 | Msa0230820:CDS | 45.0% | |
| GGTTCCATCCTTAAATCCGT+TGG | + | chr2_2:3037899-3037918 | Msa0230820:CDS | 45.0% | |
| ! | TAACGCGTCCAACGGATTTA+AGG | - | chr2_2:3037910-3037929 | None:intergenic | 45.0% |
| TAAATCCGTTGGACGCGTTA+AGG | + | chr2_2:3037910-3037929 | Msa0230820:CDS | 45.0% | |
| ! | GAAGGTGCATCAGATGAGTT+GGG | - | chr2_2:3037971-3037990 | None:intergenic | 45.0% |
| ! | TGAAGGTGCATCAGATGAGT+TGG | - | chr2_2:3037972-3037991 | None:intergenic | 45.0% |
| !! | CAACATGGACTGGAAAGACA+TGG | + | chr2_2:3038022-3038041 | Msa0230820:CDS | 45.0% |
| !! | GAGGCGTTTTCCTTTCTTTC+GGG | - | chr2_2:3038213-3038232 | None:intergenic | 45.0% |
| !!! | GGAGGCGTTTTCCTTTCTTT+CGG | - | chr2_2:3038214-3038233 | None:intergenic | 45.0% |
| GTTCCAACACACCATTAAGG+AGG | - | chr2_2:3038272-3038291 | None:intergenic | 45.0% | |
| TCCTGTTAATCCAGAAGCTC+TGG | + | chr2_2:3038440-3038459 | Msa0230820:CDS | 45.0% | |
| CCTGTTAATCCAGAAGCTCT+GGG | + | chr2_2:3038441-3038460 | Msa0230820:CDS | 45.0% | |
| ! | CAGGTTTAGGACAGAAGTTG+AGG | - | chr2_2:3038579-3038598 | None:intergenic | 45.0% |
| TTCACACGCTATCTTGAACC+AGG | + | chr2_2:3038942-3038961 | Msa0230820:intron | 45.0% | |
| TTCACTGTATAACCCAGCAG+CGG | - | chr2_2:3039169-3039188 | None:intergenic | 45.0% | |
| TCTAAACTTGAGTGGACCCT+TGG | + | chr2_2:3039299-3039318 | Msa0230820:intron | 45.0% | |
| !!! | TTTTTGGATCAGGCACTGAG+AGG | + | chr2_2:3039581-3039600 | Msa0230820:intron | 45.0% |
| !! | CTTTCTGGTGATGGAAAAGC+AGG | + | chr2_2:3039622-3039641 | Msa0230820:CDS | 45.0% |
| !! | TGGTGATGGAAAAGCAGGAA+AGG | + | chr2_2:3039627-3039646 | Msa0230820:CDS | 45.0% |
| !! | GGTGATGGAAAAGCAGGAAA+GGG | + | chr2_2:3039628-3039647 | Msa0230820:CDS | 45.0% |
| GGGTCTGCTAGCAATAATCA+TGG | + | chr2_2:3040242-3040261 | Msa0230820:CDS | 45.0% | |
| TGGTAGAGACTTCAAGCAAG+AGG | + | chr2_2:3040262-3040281 | Msa0230820:CDS | 45.0% | |
| !! | GGTTTGTTGGTGTTGGCTTA+TGG | + | chr2_2:3040526-3040545 | Msa0230820:intron | 45.0% |
| GTCTCAGACTTTATTCTCCC+CGG | + | chr2_2:3040571-3040590 | Msa0230820:intron | 45.0% | |
| CCAAAATAGCCCACCGAAAT+TGG | - | chr2_2:3040599-3040618 | None:intergenic | 45.0% | |
| !!! | CCAATTTCGGTGGGCTATTT+TGG | + | chr2_2:3040596-3040615 | Msa0230820:intron | 45.0% |
| !! | GATGAATTGCTGGGTACTGA+TGG | + | chr2_2:3040925-3040944 | Msa0230820:CDS | 45.0% |
| TAAAGGAGAGGTGACGAAGA+TGG | + | chr2_2:3040963-3040982 | Msa0230820:CDS | 45.0% | |
| !! | AGTTGATGATGATGGGATGG+AGG | + | chr2_2:3041038-3041057 | Msa0230820:CDS | 45.0% |
| ! | TTTAAGGCATGGTGGAACCT+TGG | + | chr2_2:3041170-3041189 | Msa0230820:CDS | 45.0% |
| !! | CCCATGCTTTCAAGTTTGTG+TGG | + | chr2_2:3041441-3041460 | Msa0230820:CDS | 45.0% |
| AATAGTCAGTCTGTGTGGAG+TGG | + | chr2_2:3041480-3041499 | Msa0230820:CDS | 45.0% | |
| ! | CTTTGGTGTATTAGCGAGTG+CGG | - | chr2_2:3041507-3041526 | None:intergenic | 45.0% |
| AGTTCAATTCACGCGGCTAT+TGG | + | chr2_2:3041543-3041562 | Msa0230820:CDS | 45.0% | |
| GTTCAATTCACGCGGCTATT+GGG | + | chr2_2:3041544-3041563 | Msa0230820:CDS | 45.0% | |
| !! | TTTTGGGGGGGCTTAGATAA+TGG | + | chr2_2:3041753-3041772 | Msa0230820:three_prime_UTR | 45.0% |
| !!! | TATTTTTTTTTTAATAATTG+GGG | + | chr2_2:3041883-3041902 | Msa0230820:three_prime_UTR | 5.0% |
| !! | ACAGGGTTGGTGTTACCCTT+TGG | - | chr2_2:3037704-3037723 | None:intergenic | 50.0% |
| GTTGACACACCTTCTTCCAC+CGG | + | chr2_2:3037836-3037855 | Msa0230820:CDS | 50.0% | |
| ! | GCGTCCAACGGATTTAAGGA+TGG | - | chr2_2:3037906-3037925 | None:intergenic | 50.0% |
| CTTCACCTTAACGCGTCCAA+CGG | - | chr2_2:3037918-3037937 | None:intergenic | 50.0% | |
| AAGAGTAGCCAGCAGCAACA+TGG | + | chr2_2:3038007-3038026 | Msa0230820:CDS | 50.0% | |
| TTTCCAGTCCATGTTGCTGC+TGG | - | chr2_2:3038018-3038037 | None:intergenic | 50.0% | |
| CCCAGAGCTTCTGGATTAAC+AGG | - | chr2_2:3038444-3038463 | None:intergenic | 50.0% | |
| ACAGGAATTCCCAGAGCTTC+TGG | - | chr2_2:3038453-3038472 | None:intergenic | 50.0% | |
| ! | GAACAACCAAAAGGGAGCAC+AGG | + | chr2_2:3039186-3039205 | Msa0230820:CDS | 50.0% |
| TGGACCCTTGGAGACTATCT+GGG | + | chr2_2:3039311-3039330 | Msa0230820:intron | 50.0% | |
| GCTTCCCAGATAGTCTCCAA+GGG | - | chr2_2:3039318-3039337 | None:intergenic | 50.0% | |
| AGCTTCCCAGATAGTCTCCA+AGG | - | chr2_2:3039319-3039338 | None:intergenic | 50.0% | |
| ! | GGAAAAGTGGTTGCTTTGCC+AGG | - | chr2_2:3039342-3039361 | None:intergenic | 50.0% |
| GATGGAAAAGCAGGAAAGGG+TGG | + | chr2_2:3039631-3039650 | Msa0230820:CDS | 50.0% | |
| !! | TTTGTGTGCTAAAGCGCCGT+AGG | + | chr2_2:3040177-3040196 | Msa0230820:CDS | 50.0% |
| !! | GTTGGTGTTGGCTTATGGCA+TGG | + | chr2_2:3040531-3040550 | Msa0230820:intron | 50.0% |
| ! | ATTCTCCCCGGTGCCAATTT+CGG | + | chr2_2:3040583-3040602 | Msa0230820:intron | 50.0% |
| TCTGGATCAGATGTTGCCGA+AGG | - | chr2_2:3040733-3040752 | None:intergenic | 50.0% | |
| TCCATGCTTGTAGAGAGTCC+CGG | + | chr2_2:3040877-3040896 | Msa0230820:CDS | 50.0% | |
| TGACAACGAATCTTCCCCAC+CGG | - | chr2_2:3040899-3040918 | None:intergenic | 50.0% | |
| AAGAACCGTAGCCCTTCTGA+TGG | + | chr2_2:3040997-3041016 | Msa0230820:CDS | 50.0% | |
| AGAACCGTAGCCCTTCTGAT+GGG | + | chr2_2:3040998-3041017 | Msa0230820:CDS | 50.0% | |
| CTTCATGCCTCCCATCAGAA+GGG | - | chr2_2:3041011-3041030 | None:intergenic | 50.0% | |
| ACTTCATGCCTCCCATCAGA+AGG | - | chr2_2:3041012-3041031 | None:intergenic | 50.0% | |
| AGATGGAGAGGGGGAAAATG+AGG | + | chr2_2:3041104-3041123 | Msa0230820:CDS | 50.0% | |
| TGGAACCTTGGCAGAGGAAT+CGG | + | chr2_2:3041182-3041201 | Msa0230820:CDS | 50.0% | |
| AACTTCCGATTCCTCTGCCA+AGG | - | chr2_2:3041190-3041209 | None:intergenic | 50.0% | |
| TTGGCAGAGGAATCGGAAGT+TGG | + | chr2_2:3041189-3041208 | Msa0230820:CDS | 50.0% | |
| CCTTGTGCTTCTTCTGTTGC+TGG | - | chr2_2:3041278-3041297 | None:intergenic | 50.0% | |
| ! | CCAGCAACAGAAGAAGCACA+AGG | + | chr2_2:3041275-3041294 | Msa0230820:CDS | 50.0% |
| TGAGCTGAGACTTGTGGACA+TGG | - | chr2_2:3041915-3041934 | None:intergenic | 50.0% | |
| TCCACAAGTCTCAGCTCATC+CGG | + | chr2_2:3041917-3041936 | Msa0230820:three_prime_UTR | 50.0% | |
| GATCGAAGAAGGGGTTCCGA+CGG | + | chr2_2:3037166-3037185 | Msa0230820:five_prime_UTR | 55.0% | |
| ! | TCAATTCACGGTGACGGTGG+CGG | - | chr2_2:3037207-3037226 | None:intergenic | 55.0% |
| !! | TGATCGGTACCGGTGGAAGA+AGG | - | chr2_2:3037848-3037867 | None:intergenic | 55.0% |
| ! | GGAATGTTGATCGGTACCGG+TGG | - | chr2_2:3037855-3037874 | None:intergenic | 55.0% |
| TAGCCAGCAGCAACATGGAC+TGG | + | chr2_2:3038012-3038031 | Msa0230820:CDS | 55.0% | |
| ! | TCGGCAAAGGCTTGCTTGTC+TGG | - | chr2_2:3038171-3038190 | None:intergenic | 55.0% |
| ! | GTCTCACCTGTGCTCCCTTT+TGG | - | chr2_2:3039195-3039214 | None:intergenic | 55.0% |
| GTGGACCCTTGGAGACTATC+TGG | + | chr2_2:3039310-3039329 | Msa0230820:intron | 55.0% | |
| GAGACTATCTGGGAAGCTCC+TGG | + | chr2_2:3039321-3039340 | Msa0230820:intron | 55.0% | |
| !! | TGTGCTAAAGCGCCGTAGGA+GGG | + | chr2_2:3040181-3040200 | Msa0230820:CDS | 55.0% |
| !! | TAAAGCGCCGTAGGAGGGAA+CGG | + | chr2_2:3040186-3040205 | Msa0230820:CDS | 55.0% |
| CATGGAGTGTGCTCCTCTCA+AGG | + | chr2_2:3040549-3040568 | Msa0230820:intron | 55.0% | |
| TAGCCCACCGAAATTGGCAC+CGG | - | chr2_2:3040593-3040612 | None:intergenic | 55.0% | |
| ACCGGGACTCTCTACAAGCA+TGG | - | chr2_2:3040881-3040900 | None:intergenic | 55.0% | |
| ATGCTTGTAGAGAGTCCCGG+TGG | + | chr2_2:3040880-3040899 | Msa0230820:CDS | 55.0% | |
| TGCTTGTAGAGAGTCCCGGT+GGG | + | chr2_2:3040881-3040900 | Msa0230820:CDS | 55.0% | |
| GACAACGAATCTTCCCCACC+GGG | - | chr2_2:3040898-3040917 | None:intergenic | 55.0% | |
| GGGATGGAGGAAGAGAACCA+TGG | + | chr2_2:3041051-3041070 | Msa0230820:CDS | 55.0% | |
| GAAGAGGAGGAGGAGGAAGA+TGG | + | chr2_2:3041087-3041106 | Msa0230820:CDS | 55.0% | |
| GAGGAGGAGGAAGATGGAGA+GGG | + | chr2_2:3041093-3041112 | Msa0230820:CDS | 55.0% | |
| AGGAGGAGGAAGATGGAGAG+GGG | + | chr2_2:3041094-3041113 | Msa0230820:CDS | 55.0% | |
| GAACAGGGAGAAGAGACGCA+TGG | + | chr2_2:3041140-3041159 | Msa0230820:CDS | 55.0% | |
| CGCGGCTATTGGGTCGTTAA+TGG | + | chr2_2:3041554-3041573 | Msa0230820:CDS | 55.0% | |
| ACCGGATGAGCTGAGACTTG+TGG | - | chr2_2:3041921-3041940 | None:intergenic | 55.0% | |
| !! | ATGAAGTACTGGGCCGCTGC+TGG | + | chr2_2:3039153-3039172 | Msa0230820:CDS | 60.0% |
| !! | TGAAGTACTGGGCCGCTGCT+GGG | + | chr2_2:3039154-3039173 | Msa0230820:CDS | 60.0% |
| !! | GTGTGCTAAAGCGCCGTAGG+AGG | + | chr2_2:3040180-3040199 | Msa0230820:CDS | 60.0% |
| !! | AAAGCGCCGTAGGAGGGAAC+GGG | + | chr2_2:3040187-3040206 | Msa0230820:CDS | 60.0% |
| TCTCCTCCCGTTCCCTCCTA+CGG | - | chr2_2:3040196-3040215 | None:intergenic | 60.0% | |
| ! | TCCCCGGTGCCAATTTCGGT+GGG | + | chr2_2:3040587-3040606 | Msa0230820:intron | 60.0% |
| AGCCCACCGAAATTGGCACC+GGG | - | chr2_2:3040592-3040611 | None:intergenic | 60.0% | |
| GCTTGTAGAGAGTCCCGGTG+GGG | + | chr2_2:3040882-3040901 | Msa0230820:CDS | 60.0% | |
| ACCGTAGCCCTTCTGATGGG+AGG | + | chr2_2:3041001-3041020 | Msa0230820:CDS | 60.0% | |
| GCCTCCCATCAGAAGGGCTA+CGG | - | chr2_2:3041005-3041024 | None:intergenic | 60.0% | |
| GGAAGAGAACCATGGCCCAG+AGG | + | chr2_2:3041059-3041078 | Msa0230820:CDS | 60.0% | |
| GAACCATGGCCCAGAGGATG+CGG | + | chr2_2:3041065-3041084 | Msa0230820:CDS | 60.0% | |
| CCTCCTCTTCCGCATCCTCT+GGG | - | chr2_2:3041077-3041096 | None:intergenic | 60.0% | |
| TCCTCCTCTTCCGCATCCTC+TGG | - | chr2_2:3041078-3041097 | None:intergenic | 60.0% | |
| AGAGGATGCGGAAGAGGAGG+AGG | + | chr2_2:3041077-3041096 | Msa0230820:CDS | 60.0% | |
| GGAGGAGGAGGAAGATGGAG+AGG | + | chr2_2:3041092-3041111 | Msa0230820:CDS | 60.0% | |
| GGAGGAGGAAGATGGAGAGG+GGG | + | chr2_2:3041095-3041114 | Msa0230820:CDS | 60.0% | |
| ! | GCATGGTGGAACCTTGGCAG+AGG | + | chr2_2:3041176-3041195 | Msa0230820:CDS | 60.0% |
| !! | TTCACGGTGACGGTGGCGGA+GGG | - | chr2_2:3037203-3037222 | None:intergenic | 65.0% |
| ! | ATTCACGGTGACGGTGGCGG+AGG | - | chr2_2:3037204-3037223 | None:intergenic | 65.0% |
| ! | CTCCCCGGTGCCAATTTCGG+TGG | + | chr2_2:3040586-3040605 | Msa0230820:intron | 65.0% |
| GCCCACCGAAATTGGCACCG+GGG | - | chr2_2:3040591-3040610 | None:intergenic | 65.0% | |
| CTTCCGCATCCTCTGGGCCA+TGG | - | chr2_2:3041071-3041090 | None:intergenic | 65.0% | |
| TGGCCCAGAGGATGCGGAAG+AGG | + | chr2_2:3041071-3041090 | Msa0230820:CDS | 65.0% | |
| CCCAGAGGATGCGGAAGAGG+AGG | + | chr2_2:3041074-3041093 | Msa0230820:CDS | 65.0% | |
| GGATGCGGAAGAGGAGGAGG+AGG | + | chr2_2:3041080-3041099 | Msa0230820:CDS | 65.0% | |
| GAGGGACAAGGCGACGCCGT+CGG | - | chr2_2:3037185-3037204 | None:intergenic | 70.0% | |
| !! | GTGACGGTGGCGGAGGGACA+AGG | - | chr2_2:3037197-3037216 | None:intergenic | 70.0% |
| GCGCCGTAGGAGGGAACGGG+AGG | + | chr2_2:3040190-3040209 | Msa0230820:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 3037095 | 3041950 | 3037095 | ID=Msa0230820;Name=Msa0230820 |
| chr2_2 | mRNA | 3037095 | 3041950 | 3037095 | ID=Msa0230820-mRNA-1;Parent=Msa0230820;Name=Msa0230820-mRNA-1;_AED=0.07;_eAED=0.07;_QI=291|1|1|1|0.85|0.75|8|369|594 |
| chr2_2 | exon | 3037095 | 3037336 | 3037095 | ID=Msa0230820-mRNA-1:exon:1095;Parent=Msa0230820-mRNA-1 |
| chr2_2 | exon | 3037619 | 3038279 | 3037619 | ID=Msa0230820-mRNA-1:exon:1096;Parent=Msa0230820-mRNA-1 |
| chr2_2 | exon | 3038393 | 3038470 | 3038393 | ID=Msa0230820-mRNA-1:exon:1097;Parent=Msa0230820-mRNA-1 |
| chr2_2 | exon | 3038964 | 3039207 | 3038964 | ID=Msa0230820-mRNA-1:exon:1098;Parent=Msa0230820-mRNA-1 |
| chr2_2 | exon | 3039593 | 3039683 | 3039593 | ID=Msa0230820-mRNA-1:exon:1099;Parent=Msa0230820-mRNA-1 |
| chr2_2 | exon | 3040145 | 3040283 | 3040145 | ID=Msa0230820-mRNA-1:exon:1100;Parent=Msa0230820-mRNA-1 |
| chr2_2 | exon | 3040874 | 3041296 | 3040874 | ID=Msa0230820-mRNA-1:exon:1101;Parent=Msa0230820-mRNA-1 |
| chr2_2 | exon | 3041384 | 3041950 | 3041384 | ID=Msa0230820-mRNA-1:exon:1102;Parent=Msa0230820-mRNA-1 |
| chr2_2 | five_prime_UTR | 3037095 | 3037336 | 3037095 | ID=Msa0230820-mRNA-1:five_prime_utr;Parent=Msa0230820-mRNA-1 |
| chr2_2 | five_prime_UTR | 3037619 | 3037667 | 3037619 | ID=Msa0230820-mRNA-1:five_prime_utr;Parent=Msa0230820-mRNA-1 |
| chr2_2 | CDS | 3037668 | 3038279 | 3037668 | ID=Msa0230820-mRNA-1:cds;Parent=Msa0230820-mRNA-1 |
| chr2_2 | CDS | 3038393 | 3038470 | 3038393 | ID=Msa0230820-mRNA-1:cds;Parent=Msa0230820-mRNA-1 |
| chr2_2 | CDS | 3038964 | 3039207 | 3038964 | ID=Msa0230820-mRNA-1:cds;Parent=Msa0230820-mRNA-1 |
| chr2_2 | CDS | 3039593 | 3039683 | 3039593 | ID=Msa0230820-mRNA-1:cds;Parent=Msa0230820-mRNA-1 |
| chr2_2 | CDS | 3040145 | 3040283 | 3040145 | ID=Msa0230820-mRNA-1:cds;Parent=Msa0230820-mRNA-1 |
| chr2_2 | CDS | 3040874 | 3041296 | 3040874 | ID=Msa0230820-mRNA-1:cds;Parent=Msa0230820-mRNA-1 |
| chr2_2 | CDS | 3041384 | 3041581 | 3041384 | ID=Msa0230820-mRNA-1:cds;Parent=Msa0230820-mRNA-1 |
| chr2_2 | three_prime_UTR | 3041582 | 3041950 | 3041582 | ID=Msa0230820-mRNA-1:three_prime_utr;Parent=Msa0230820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
