Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232720 | XP_003593344.3 | 94.901 | 353 | 18 | 0 | 1 | 353 | 1 | 353 | 0.0 | 697 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232720 | sp|Q9T072|BH025_ARATH | 56.757 | 185 | 72 | 4 | 173 | 353 | 148 | 328 | 9.31e-59 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232720 | A0A396J145 | 94.901 | 353 | 18 | 0 | 1 | 353 | 1 | 353 | 0.0 | 697 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0232720 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042550 | Msa0232720 | 0.813821 | 2.108354e-51 | -8.615850e-47 |
| Msa0092410 | Msa0232720 | 0.824852 | 6.449170e-54 | -8.615850e-47 |
| Msa0103250 | Msa0232720 | 0.804362 | 2.240864e-49 | -8.615850e-47 |
| Msa0152560 | Msa0232720 | 0.803678 | 3.108009e-49 | -8.615850e-47 |
| Msa0178510 | Msa0232720 | 0.814735 | 1.324224e-51 | -8.615850e-47 |
| Msa0187030 | Msa0232720 | 0.801591 | 8.378268e-49 | -8.615850e-47 |
| Msa0187830 | Msa0232720 | 0.830752 | 2.460384e-55 | -8.615850e-47 |
| Msa0190530 | Msa0232720 | 0.882042 | 1.451057e-70 | -8.615850e-47 |
| Msa0201570 | Msa0232720 | 0.815807 | 7.651561e-52 | -8.615850e-47 |
| Msa0225220 | Msa0232720 | 0.805403 | 1.357342e-49 | -8.615850e-47 |
| Msa0227340 | Msa0232720 | 0.832047 | 1.181434e-55 | -8.615850e-47 |
| Msa0232720 | Msa0264830 | 0.835618 | 1.511351e-56 | -8.615850e-47 |
| Msa0232720 | Msa0269560 | 0.823646 | 1.238111e-53 | -8.615850e-47 |
| Msa0232720 | Msa0282720 | 0.804480 | 2.117507e-49 | -8.615850e-47 |
| Msa0232720 | Msa0302870 | 0.830209 | 3.340498e-55 | -8.615850e-47 |
| Msa0232720 | Msa0308460 | 0.818499 | 1.899023e-52 | -8.615850e-47 |
| Msa0232720 | Msa0311610 | 0.821836 | 3.266150e-53 | -8.615850e-47 |
| Msa0232720 | Msa0321080 | 0.816669 | 4.909891e-52 | -8.615850e-47 |
| Msa0232720 | Msa0340340 | 0.840984 | 6.255839e-58 | -8.615850e-47 |
| Msa0232720 | Msa0348550 | 0.804025 | 2.632682e-49 | -8.615850e-47 |
| Msa0232720 | Msa0389910 | 0.803714 | 3.055052e-49 | -8.615850e-47 |
| Msa0232720 | Msa0393620 | 0.803831 | 2.889674e-49 | -8.615850e-47 |
| Msa0232720 | Msa0410580 | 0.807604 | 4.660712e-50 | -8.615850e-47 |
| Msa0232720 | Msa0483800 | 0.802038 | 6.780694e-49 | -8.615850e-47 |
| Msa0232720 | Msa0486690 | 0.801342 | 9.419729e-49 | -8.615850e-47 |
| Msa0232720 | Msa0506860 | 0.813456 | 2.535775e-51 | -8.615850e-47 |
| Msa0232720 | Msa0526070 | -0.805636 | 1.212993e-49 | -8.615850e-47 |
| Msa0232720 | Msa0562570 | 0.810474 | 1.132400e-50 | -8.615850e-47 |
| Msa0232720 | Msa0574600 | 0.809068 | 2.270799e-50 | -8.615850e-47 |
| Msa0232720 | Msa0579660 | 0.806506 | 7.960061e-50 | -8.615850e-47 |
| Msa0232720 | Msa0622170 | -0.800066 | 1.715857e-48 | -8.615850e-47 |
| Msa0232720 | Msa0667740 | 0.825242 | 5.217076e-54 | -8.615850e-47 |
| Msa0232720 | Msa0708310 | 0.829014 | 6.523934e-55 | -8.615850e-47 |
| Msa0232720 | Msa0795070 | 0.800703 | 1.272413e-48 | -8.615850e-47 |
| Msa0232720 | Msa0828240 | 0.830956 | 2.192276e-55 | -8.615850e-47 |
| Msa0232720 | Msa0829830 | 0.935248 | 1.143269e-96 | -8.615850e-47 |
| Msa0232720 | Msa0902830 | 0.814258 | 1.688611e-51 | -8.615850e-47 |
| Msa0232720 | Msa0935770 | 0.817549 | 3.112472e-52 | -8.615850e-47 |
| Msa0232720 | Msa0936390 | 0.818999 | 1.461806e-52 | -8.615850e-47 |
| Msa0232720 | Msa0960390 | 0.805709 | 1.171202e-49 | -8.615850e-47 |
| Msa0232720 | Msa0972810 | 0.806524 | 7.890352e-50 | -8.615850e-47 |
| Msa0232720 | Msa0994910 | 0.800518 | 1.388210e-48 | -8.615850e-47 |
| Msa0232720 | Msa1022820 | 0.803376 | 3.590553e-49 | -8.615850e-47 |
| Msa0232720 | Msa1039710 | -0.801994 | 6.923302e-49 | -8.615850e-47 |
| Msa0232720 | Msa1284900 | 0.805474 | 1.311792e-49 | -8.615850e-47 |
| Msa0232720 | Msa1297310 | 0.804886 | 1.741673e-49 | -8.615850e-47 |
| Msa0232720 | Msa1338400 | 0.814202 | 1.737052e-51 | -8.615850e-47 |
| Msa0232720 | Msa1343250 | 0.870653 | 1.240496e-66 | -8.615850e-47 |
| Msa0232720 | Msa1353890 | 0.829269 | 5.658402e-55 | -8.615850e-47 |
| Msa0232720 | Msa1372150 | 0.818799 | 1.623656e-52 | -8.615850e-47 |
| Msa0232720 | Msa1378040 | 0.815142 | 1.075617e-51 | -8.615850e-47 |
| Msa0232720 | Msa1385020 | 0.802793 | 4.738688e-49 | -8.615850e-47 |
| Msa0232720 | Msa1408340 | 0.812991 | 3.208324e-51 | -8.615850e-47 |
| Msa0232720 | Msa1420270 | 0.804748 | 1.861367e-49 | -8.615850e-47 |
| Msa0232720 | Msa1424630 | 0.827325 | 1.665524e-54 | -8.615850e-47 |
| Msa0232720 | Msa1430550 | 0.825942 | 3.559765e-54 | -8.615850e-47 |
| Msa0232720 | Msa1457160 | 0.813858 | 2.068472e-51 | -8.615850e-47 |
| Msa0232720 | Msa1462360 | 0.817165 | 3.798172e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232720 | MtrunA17_Chr2g0280161 | 94.901 | 353 | 18 | 0 | 1 | 353 | 1 | 353 | 0.0 | 697 |
| Msa0232720 | MtrunA17_Chr4g0049331 | 55.587 | 349 | 111 | 10 | 7 | 353 | 4 | 310 | 3.05e-115 | 337 |
| Msa0232720 | MtrunA17_Chr4g0054561 | 39.943 | 348 | 173 | 14 | 5 | 345 | 2 | 320 | 6.71e-59 | 193 |
| Msa0232720 | MtrunA17_Chr4g0054551 | 39.943 | 348 | 173 | 14 | 5 | 345 | 2 | 320 | 6.91e-58 | 190 |
| Msa0232720 | MtrunA17_Chr5g0400661 | 44.358 | 257 | 115 | 6 | 106 | 346 | 86 | 330 | 2.08e-57 | 189 |
| Msa0232720 | MtrunA17_Chr5g0400621 | 52.632 | 190 | 87 | 2 | 166 | 353 | 144 | 332 | 5.33e-55 | 183 |
| Msa0232720 | MtrunA17_Chr4g0054581 | 44.643 | 224 | 107 | 5 | 138 | 353 | 163 | 377 | 2.50e-49 | 169 |
| Msa0232720 | MtrunA17_Chr5g0400671 | 34.104 | 346 | 200 | 10 | 5 | 348 | 2 | 321 | 4.96e-49 | 167 |
| Msa0232720 | MtrunA17_Chr6g0468491 | 46.667 | 195 | 99 | 4 | 161 | 353 | 121 | 312 | 2.47e-48 | 165 |
| Msa0232720 | MtrunA17_Chr8g0336681 | 42.081 | 221 | 116 | 4 | 134 | 346 | 115 | 331 | 2.93e-48 | 166 |
| Msa0232720 | MtrunA17_Chr4g0054571 | 54.749 | 179 | 69 | 4 | 177 | 346 | 150 | 325 | 3.93e-48 | 165 |
| Msa0232720 | MtrunA17_Chr2g0333621 | 50.847 | 177 | 81 | 2 | 173 | 346 | 134 | 307 | 2.17e-46 | 160 |
| Msa0232720 | MtrunA17_Chr2g0307131 | 43.842 | 203 | 107 | 3 | 151 | 353 | 159 | 354 | 4.64e-46 | 160 |
| Msa0232720 | MtrunA17_Chr2g0307141 | 46.524 | 187 | 83 | 4 | 175 | 353 | 181 | 358 | 9.89e-45 | 157 |
| Msa0232720 | MtrunA17_Chr7g0225901 | 45.304 | 181 | 95 | 2 | 151 | 331 | 65 | 241 | 3.37e-43 | 150 |
| Msa0232720 | MtrunA17_Chr4g0033391 | 43.684 | 190 | 101 | 2 | 166 | 353 | 134 | 319 | 4.63e-43 | 152 |
| Msa0232720 | MtrunA17_Chr4g0054621 | 39.904 | 208 | 107 | 3 | 156 | 353 | 141 | 340 | 1.34e-41 | 148 |
| Msa0232720 | MtrunA17_Chr2g0333641 | 46.927 | 179 | 92 | 2 | 173 | 351 | 133 | 308 | 1.45e-39 | 142 |
| Msa0232720 | MtrunA17_Chr4g0002801 | 45.856 | 181 | 89 | 3 | 173 | 346 | 148 | 326 | 1.55e-39 | 142 |
| Msa0232720 | MtrunA17_Chr4g0002781 | 46.067 | 178 | 90 | 2 | 173 | 346 | 170 | 345 | 1.71e-39 | 143 |
| Msa0232720 | MtrunA17_Chr4g0033291 | 41.627 | 209 | 111 | 3 | 151 | 352 | 122 | 326 | 5.46e-39 | 141 |
| Msa0232720 | MtrunA17_Chr2g0333611 | 42.697 | 178 | 89 | 5 | 174 | 346 | 42 | 211 | 8.01e-39 | 137 |
| Msa0232720 | MtrunA17_Chr5g0400641 | 46.452 | 155 | 82 | 1 | 180 | 334 | 1 | 154 | 1.57e-38 | 135 |
| Msa0232720 | MtrunA17_Chr4g0033281 | 40.952 | 210 | 112 | 3 | 151 | 353 | 120 | 324 | 1.21e-37 | 137 |
| Msa0232720 | MtrunA17_Chr2g0333541 | 43.094 | 181 | 100 | 2 | 168 | 346 | 85 | 264 | 6.69e-36 | 131 |
| Msa0232720 | MtrunA17_Chr6g0468461 | 41.765 | 170 | 84 | 2 | 161 | 330 | 157 | 311 | 9.87e-33 | 125 |
| Msa0232720 | MtrunA17_Chr7g0249811 | 41.860 | 172 | 90 | 1 | 175 | 346 | 163 | 324 | 4.12e-31 | 120 |
| Msa0232720 | MtrunA17_Chr7g0233441 | 38.816 | 152 | 82 | 2 | 200 | 351 | 57 | 197 | 1.18e-25 | 102 |
| Msa0232720 | MtrunA17_Chr4g0002831 | 35.260 | 173 | 99 | 4 | 180 | 351 | 45 | 205 | 3.23e-24 | 98.6 |
| Msa0232720 | MtrunA17_Chr4g0002851 | 37.500 | 152 | 76 | 2 | 200 | 351 | 65 | 197 | 1.85e-23 | 96.3 |
| Msa0232720 | MtrunA17_Chr1g0185621 | 34.395 | 157 | 93 | 3 | 177 | 324 | 475 | 630 | 6.25e-20 | 91.3 |
| Msa0232720 | MtrunA17_Chr7g0275821 | 31.618 | 136 | 84 | 2 | 177 | 312 | 252 | 378 | 2.63e-16 | 79.7 |
| Msa0232720 | MtrunA17_Chr8g0366751 | 33.143 | 175 | 106 | 3 | 150 | 313 | 434 | 608 | 1.23e-15 | 78.2 |
| Msa0232720 | MtrunA17_Chr5g0411341 | 31.333 | 150 | 87 | 3 | 177 | 313 | 493 | 639 | 4.49e-15 | 76.6 |
| Msa0232720 | MtrunA17_Chr8g0346161 | 32.168 | 143 | 85 | 3 | 177 | 313 | 291 | 427 | 8.52e-15 | 75.1 |
| Msa0232720 | MtrunA17_Chr3g0131691 | 29.032 | 155 | 101 | 2 | 179 | 324 | 300 | 454 | 1.21e-14 | 74.7 |
| Msa0232720 | MtrunA17_Chr7g0260841 | 54.386 | 57 | 26 | 0 | 177 | 233 | 355 | 411 | 7.04e-14 | 72.4 |
| Msa0232720 | MtrunA17_Chr8g0346151 | 27.711 | 166 | 99 | 3 | 177 | 330 | 279 | 435 | 1.34e-13 | 71.6 |
| Msa0232720 | MtrunA17_Chr7g0252041 | 28.302 | 159 | 99 | 3 | 179 | 324 | 288 | 444 | 2.54e-13 | 70.9 |
| Msa0232720 | MtrunA17_Chr8g0365711 | 25.843 | 178 | 110 | 5 | 166 | 327 | 227 | 398 | 1.11e-11 | 65.5 |
| Msa0232720 | MtrunA17_Chr8g0386921 | 25.962 | 208 | 121 | 5 | 174 | 352 | 403 | 606 | 4.82e-11 | 63.9 |
| Msa0232720 | MtrunA17_Chr1g0211081 | 38.710 | 93 | 53 | 2 | 168 | 257 | 309 | 400 | 5.04e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0232720 | AT4G37850.2 | 56.757 | 185 | 72 | 4 | 173 | 353 | 148 | 328 | 9.46e-60 | 196 |
| Msa0232720 | AT4G37850.1 | 56.757 | 185 | 72 | 4 | 173 | 353 | 148 | 328 | 9.46e-60 | 196 |
| Msa0232720 | AT2G22760.1 | 49.153 | 177 | 87 | 3 | 175 | 348 | 117 | 293 | 1.16e-48 | 166 |
| Msa0232720 | AT2G22770.1 | 46.809 | 188 | 86 | 2 | 177 | 350 | 132 | 319 | 7.21e-45 | 157 |
| Msa0232720 | AT2G22750.2 | 50.811 | 185 | 84 | 3 | 173 | 352 | 122 | 304 | 3.40e-43 | 152 |
| Msa0232720 | AT2G22750.3 | 50.811 | 185 | 84 | 3 | 173 | 352 | 150 | 332 | 7.10e-43 | 152 |
| Msa0232720 | AT2G22750.5 | 50.811 | 185 | 84 | 3 | 173 | 352 | 146 | 328 | 7.18e-43 | 152 |
| Msa0232720 | AT2G22750.1 | 50.811 | 185 | 83 | 4 | 173 | 352 | 122 | 303 | 7.14e-42 | 148 |
| Msa0232720 | AT2G22750.4 | 50.811 | 185 | 83 | 4 | 173 | 352 | 150 | 331 | 1.52e-41 | 148 |
| Msa0232720 | AT2G22760.2 | 47.468 | 158 | 81 | 2 | 175 | 330 | 117 | 274 | 1.54e-41 | 147 |
| Msa0232720 | AT1G32640.1 | 36.025 | 161 | 87 | 4 | 165 | 313 | 432 | 588 | 1.25e-18 | 87.8 |
| Msa0232720 | AT5G46760.1 | 34.783 | 161 | 101 | 2 | 177 | 334 | 415 | 574 | 4.02e-17 | 83.2 |
| Msa0232720 | AT2G46510.1 | 59.649 | 57 | 23 | 0 | 177 | 233 | 395 | 451 | 1.23e-16 | 81.6 |
| Msa0232720 | AT4G16430.1 | 37.143 | 140 | 70 | 5 | 118 | 241 | 247 | 384 | 3.16e-16 | 80.1 |
| Msa0232720 | AT1G01260.1 | 52.174 | 69 | 32 | 1 | 168 | 235 | 423 | 491 | 9.49e-16 | 79.0 |
| Msa0232720 | AT1G01260.2 | 52.174 | 69 | 32 | 1 | 168 | 235 | 423 | 491 | 9.49e-16 | 79.0 |
| Msa0232720 | AT1G01260.3 | 52.174 | 69 | 32 | 1 | 168 | 235 | 423 | 491 | 9.49e-16 | 79.0 |
| Msa0232720 | AT4G17880.1 | 31.013 | 158 | 107 | 2 | 177 | 334 | 416 | 571 | 1.40e-15 | 78.2 |
| Msa0232720 | AT1G12860.2 | 30.921 | 152 | 100 | 3 | 178 | 324 | 268 | 419 | 2.15e-14 | 74.3 |
| Msa0232720 | AT1G12860.1 | 31.126 | 151 | 99 | 3 | 179 | 324 | 269 | 419 | 2.81e-14 | 73.9 |
| Msa0232720 | AT3G26744.6 | 30.128 | 156 | 100 | 3 | 178 | 324 | 308 | 463 | 2.80e-13 | 71.2 |
| Msa0232720 | AT3G26744.1 | 30.128 | 156 | 100 | 3 | 178 | 324 | 308 | 463 | 3.35e-13 | 70.9 |
| Msa0232720 | AT3G26744.4 | 30.128 | 156 | 100 | 3 | 178 | 324 | 308 | 463 | 3.35e-13 | 70.9 |
| Msa0232720 | AT3G26744.2 | 30.128 | 156 | 100 | 3 | 178 | 324 | 308 | 463 | 3.35e-13 | 70.9 |
| Msa0232720 | AT5G57150.3 | 30.000 | 170 | 97 | 5 | 173 | 327 | 51 | 213 | 1.08e-12 | 67.0 |
| Msa0232720 | AT5G57150.5 | 30.000 | 170 | 97 | 5 | 173 | 327 | 50 | 212 | 1.24e-12 | 67.0 |
| Msa0232720 | AT5G57150.2 | 30.000 | 170 | 97 | 5 | 173 | 327 | 51 | 213 | 1.24e-12 | 67.0 |
| Msa0232720 | AT4G09820.1 | 31.343 | 134 | 65 | 3 | 178 | 308 | 364 | 473 | 1.65e-12 | 68.9 |
| Msa0232720 | AT5G57150.4 | 30.000 | 170 | 97 | 5 | 173 | 327 | 51 | 213 | 1.96e-12 | 67.0 |
| Msa0232720 | AT5G57150.1 | 30.000 | 170 | 97 | 5 | 173 | 327 | 50 | 212 | 2.19e-12 | 66.6 |
| Msa0232720 | AT2G16910.1 | 28.049 | 164 | 89 | 4 | 179 | 317 | 316 | 475 | 2.25e-12 | 68.6 |
| Msa0232720 | AT5G41315.3 | 28.824 | 170 | 99 | 3 | 160 | 307 | 429 | 598 | 2.36e-12 | 68.6 |
| Msa0232720 | AT5G41315.2 | 28.824 | 170 | 99 | 3 | 160 | 307 | 432 | 601 | 2.59e-12 | 68.6 |
| Msa0232720 | AT5G41315.1 | 28.824 | 170 | 99 | 3 | 160 | 307 | 424 | 593 | 2.60e-12 | 68.6 |
| Msa0232720 | AT3G61950.6 | 30.496 | 141 | 87 | 3 | 177 | 311 | 128 | 263 | 4.46e-12 | 66.6 |
| Msa0232720 | AT4G00870.1 | 46.875 | 64 | 34 | 0 | 178 | 241 | 250 | 313 | 5.82e-12 | 67.0 |
| Msa0232720 | AT3G61950.3 | 30.496 | 141 | 87 | 3 | 177 | 311 | 179 | 314 | 9.21e-12 | 65.9 |
| Msa0232720 | AT3G61950.2 | 30.496 | 141 | 87 | 3 | 177 | 311 | 128 | 263 | 9.79e-12 | 65.5 |
| Msa0232720 | AT3G61950.1 | 30.496 | 141 | 87 | 3 | 177 | 311 | 179 | 314 | 1.77e-11 | 65.1 |
| Msa0232720 | AT4G29930.6 | 27.778 | 180 | 107 | 6 | 178 | 349 | 55 | 219 | 2.03e-11 | 63.5 |
| Msa0232720 | AT1G63650.3 | 26.923 | 156 | 97 | 2 | 169 | 307 | 397 | 552 | 2.04e-11 | 65.5 |
| Msa0232720 | AT1G63650.1 | 26.923 | 156 | 97 | 2 | 169 | 307 | 397 | 552 | 2.04e-11 | 65.5 |
| Msa0232720 | AT1G63650.2 | 26.923 | 156 | 97 | 2 | 169 | 307 | 397 | 552 | 2.04e-11 | 65.5 |
| Msa0232720 | AT4G29930.2 | 28.161 | 174 | 111 | 4 | 178 | 349 | 55 | 216 | 3.01e-11 | 63.2 |
| Msa0232720 | AT4G29930.1 | 25.773 | 194 | 119 | 3 | 178 | 349 | 55 | 245 | 5.67e-11 | 62.8 |
Find 66 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAATCTTGCTTCAATTTC+AGG | 0.082646 | 2_2:-4977696 | None:intergenic |
| AATATATATCTTACCATTTC+AGG | 0.177016 | 2_2:-4976168 | None:intergenic |
| AACTTAACTGCTTCTGCTTT+TGG | 0.208058 | 2_2:+4976488 | Msa0232720:CDS |
| AGCAGAAGCAGTTAAGTTAT+TGG | 0.221213 | 2_2:-4976483 | None:intergenic |
| ATGGACAAAGCTTCTGTTCT+TGG | 0.240264 | 2_2:+4977501 | Msa0232720:CDS |
| AATAGCAGTTCCTTGACTTT+TGG | 0.241912 | 2_2:+4977816 | Msa0232720:CDS |
| TTTCACCGGTCTTTCGTTTC+CGG | 0.252447 | 2_2:-4976585 | None:intergenic |
| GTTGTTGAAGTTTGGATTAT+TGG | 0.271697 | 2_2:-4976537 | None:intergenic |
| CATGTTCTGTTGTTGAAGTT+TGG | 0.279441 | 2_2:-4976545 | None:intergenic |
| ATCACTCAAGGTAACTTGTT+TGG | 0.298879 | 2_2:+4976800 | Msa0232720:CDS |
| TTAGTCCTTGATTCAAATAT+AGG | 0.299898 | 2_2:+4975827 | Msa0232720:five_prime_UTR |
| AGAAGAGTTGTATTATTATA+TGG | 0.309218 | 2_2:-4975894 | None:intergenic |
| TTTGATACCTTCTTTAGGTT+TGG | 0.325711 | 2_2:-4976974 | None:intergenic |
| CACGGGTTTGGATGTGATAT+TGG | 0.327233 | 2_2:-4975870 | None:intergenic |
| CATTATTTGATACCTTCTTT+AGG | 0.327577 | 2_2:-4976979 | None:intergenic |
| TCACTCAAGGTAACTTGTTT+GGG | 0.334384 | 2_2:+4976801 | Msa0232720:CDS |
| TTAAAGTGATGGAGAAAGTT+AGG | 0.337641 | 2_2:-4976437 | None:intergenic |
| CTGTTCTTGGAGAAGCTATA+AGG | 0.338206 | 2_2:+4977514 | Msa0232720:CDS |
| TTATTATATGGTCACGGGTT+TGG | 0.338571 | 2_2:-4975882 | None:intergenic |
| TATTGGTATCAATAGAGTTT+AGG | 0.363520 | 2_2:-4976466 | None:intergenic |
| CATAAAATTTAACTTCTTTG+TGG | 0.376553 | 2_2:-4978369 | None:intergenic |
| TATCAGAGGGTTACCTGAAA+TGG | 0.381568 | 2_2:+4976155 | Msa0232720:CDS |
| AATAATCATGTTTGCATGGC+GGG | 0.428743 | 2_2:+4978402 | Msa0232720:three_prime_UTR |
| TTCCAGGATGAGTTCTCATA+TGG | 0.444780 | 2_2:+4976122 | Msa0232720:intron |
| TAAAATTACCTGAGCAATGA+TGG | 0.451657 | 2_2:-4977859 | None:intergenic |
| TTGAATTACACAAATCAGTT+GGG | 0.457187 | 2_2:+4976707 | Msa0232720:CDS |
| TCAAACAATGTAGTCTTATG+AGG | 0.459967 | 2_2:-4977731 | None:intergenic |
| TATAAGGTACTTAAAGCAAA+TGG | 0.467859 | 2_2:+4977530 | Msa0232720:CDS |
| GAGCAATGATGGTTATATCA+AGG | 0.480152 | 2_2:-4977848 | None:intergenic |
| TTAGGTGATTATTAAAGTGA+TGG | 0.488258 | 2_2:-4976448 | None:intergenic |
| TTTGAATTACACAAATCAGT+TGG | 0.490344 | 2_2:+4976706 | Msa0232720:CDS |
| AGAAGCCTATATTTGAATCA+AGG | 0.494417 | 2_2:-4975832 | None:intergenic |
| TTATTTCTTAACTGTTTCAC+CGG | 0.499185 | 2_2:-4976599 | None:intergenic |
| GTTGTATTATTATATGGTCA+CGG | 0.499650 | 2_2:-4975888 | None:intergenic |
| AACAGTTAAGAAATAACAGC+TGG | 0.500916 | 2_2:+4976606 | Msa0232720:CDS |
| TGATATAACCATCATTGCTC+AGG | 0.502657 | 2_2:+4977851 | Msa0232720:CDS |
| GGACACACCATCTCAGACTT+AGG | 0.503073 | 2_2:-4976740 | None:intergenic |
| AGAGAAAGTGAGTGTTCTTG+AGG | 0.506732 | 2_2:+4977554 | Msa0232720:CDS |
| CTTGAACAGCTTTAAAGACA+TGG | 0.514024 | 2_2:-4976832 | None:intergenic |
| TTGTATTATTATATGGTCAC+GGG | 0.518868 | 2_2:-4975887 | None:intergenic |
| TCATATTGTGTATCTGATGT+TGG | 0.522543 | 2_2:-4976647 | None:intergenic |
| GGTCTTTCGTTTCCGGTAGA+CGG | 0.530949 | 2_2:-4976578 | None:intergenic |
| TGGCAATTTGCAGATGGATG+TGG | 0.531836 | 2_2:+4978248 | Msa0232720:intron |
| TGCATGGAGACTCCGTCTAC+CGG | 0.552215 | 2_2:+4976566 | Msa0232720:CDS |
| TCTTGTTCCAAACCTAAAGA+AGG | 0.556354 | 2_2:+4976967 | Msa0232720:CDS |
| CTACATTGTTTGAAGAGTCA+AGG | 0.557167 | 2_2:+4977741 | Msa0232720:CDS |
| AAGTAATAATCATGTTTGCA+TGG | 0.557909 | 2_2:+4978398 | Msa0232720:three_prime_UTR |
| TGTCTTTAAAGCTGTTCAAG+AGG | 0.569037 | 2_2:+4976835 | Msa0232720:CDS |
| TGTGTAATTCAAATCAGCAA+AGG | 0.572771 | 2_2:-4976696 | None:intergenic |
| GCAAACATGTTGATCACTCA+AGG | 0.574022 | 2_2:+4976788 | Msa0232720:CDS |
| AGCAATGATGGTTATATCAA+GGG | 0.578216 | 2_2:-4977847 | None:intergenic |
| CAGACAGAGCGATGAATCGT+TGG | 0.578725 | 2_2:-4976943 | None:intergenic |
| TGGAGATTTCATCTATCAGA+GGG | 0.587975 | 2_2:+4976142 | Msa0232720:CDS |
| GAAAGTGAGTGTTCTTGAGG+AGG | 0.588414 | 2_2:+4977557 | Msa0232720:CDS |
| ATTGAAGCCTAAGTCTGAGA+TGG | 0.590244 | 2_2:+4976733 | Msa0232720:CDS |
| CTTCAACAACAGAACATGCA+TGG | 0.601083 | 2_2:+4976550 | Msa0232720:CDS |
| ATGGAGATTTCATCTATCAG+AGG | 0.606668 | 2_2:+4976141 | Msa0232720:CDS |
| GGTGAAATTCCCAAAAGTCA+AGG | 0.621239 | 2_2:-4977826 | None:intergenic |
| TAGTGAACAAAACAAAACTC+AGG | 0.634428 | 2_2:+4975946 | Msa0232720:five_prime_UTR |
| TATTGTGTATCTGATGTTGG+AGG | 0.636554 | 2_2:-4976644 | None:intergenic |
| GTCTACCGGAAACGAAAGAC+CGG | 0.653717 | 2_2:+4976580 | Msa0232720:CDS |
| TAATAATCATGTTTGCATGG+CGG | 0.685380 | 2_2:+4978401 | Msa0232720:three_prime_UTR |
| ATGATCACATCGTAGCGGAG+AGG | 0.690331 | 2_2:+4976900 | Msa0232720:CDS |
| TGACAGTGAAGGATCTTGTG+AGG | 0.718300 | 2_2:+4978280 | Msa0232720:CDS |
| AGCTCATGATCACATCGTAG+CGG | 0.723921 | 2_2:+4976895 | Msa0232720:CDS |
| TTGAAACAAATAATACACCG+AGG | 0.771939 | 2_2:+4975921 | Msa0232720:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTAGTTAATTATCA+GGG | + | chr2_2:4977192-4977211 | Msa0232720:intron | 10.0% |
| !! | TATTGAATAATGTTATATGA+TGG | - | chr2_2:4976019-4976038 | None:intergenic | 15.0% |
| !!! | AAAAGTATATATTTCATCTT+AGG | + | chr2_2:4977031-4977050 | Msa0232720:intron | 15.0% |
| !!! | GTAATATTTCAATTTTGATT+AGG | + | chr2_2:4977095-4977114 | Msa0232720:intron | 15.0% |
| !!! | GTTATTTTTAGTTAATTATC+AGG | + | chr2_2:4977191-4977210 | Msa0232720:intron | 15.0% |
| !!! | CTTTTTTAATAGTTTATCTT+AGG | - | chr2_2:4977317-4977336 | None:intergenic | 15.0% |
| !! | TTAACATTAGATATACATAT+AGG | + | chr2_2:4977451-4977470 | Msa0232720:intron | 15.0% |
| !!! | TCCTAATTTTATATGAATAT+TGG | + | chr2_2:4978218-4978237 | Msa0232720:intron | 15.0% |
| !! | TCCAATATTCATATAAAATT+AGG | - | chr2_2:4978222-4978241 | None:intergenic | 15.0% |
| !!! | ATTTTTTGGAAATGATTAAA+TGG | - | chr2_2:4978437-4978456 | None:intergenic | 15.0% |
| !! | AGAAGAGTTGTATTATTATA+TGG | - | chr2_2:4975897-4975916 | None:intergenic | 20.0% |
| !! | AATATATATCTTACCATTTC+AGG | - | chr2_2:4976171-4976190 | None:intergenic | 20.0% |
| !!! | AGTCTAAATTGATTCAATTT+TGG | - | chr2_2:4976217-4976236 | None:intergenic | 20.0% |
| !! | AAATGGTTCAAAAATAAAGT+AGG | - | chr2_2:4976286-4976305 | None:intergenic | 20.0% |
| !! | TTGATTCAAAATATGGTATT+TGG | + | chr2_2:4976314-4976333 | Msa0232720:intron | 20.0% |
| !!! | TATATACTTTTGACAATATG+AGG | - | chr2_2:4977022-4977041 | None:intergenic | 20.0% |
| !! | AATTGTGTATCAAGTATTAT+TGG | + | chr2_2:4977169-4977188 | Msa0232720:intron | 20.0% |
| !! | ATTCATATAAAATTAGGACT+TGG | - | chr2_2:4978216-4978235 | None:intergenic | 20.0% |
| !! | ATATGAATATTGGAATTGTT+TGG | + | chr2_2:4978228-4978247 | Msa0232720:intron | 20.0% |
| !!! | CATAAAATTTAACTTCTTTG+TGG | - | chr2_2:4978372-4978391 | None:intergenic | 20.0% |
| !!! | TTTTTAGTCATATTTTTGCA+TGG | + | chr2_2:4978489-4978508 | Msa0232720:three_prime_UTR | 20.0% |
| ! | TTAGTCCTTGATTCAAATAT+AGG | + | chr2_2:4975827-4975846 | Msa0232720:five_prime_UTR | 25.0% |
| ! | TTGTATTATTATATGGTCAC+GGG | - | chr2_2:4975890-4975909 | None:intergenic | 25.0% |
| ! | GTTGTATTATTATATGGTCA+CGG | - | chr2_2:4975891-4975910 | None:intergenic | 25.0% |
| !! | TTTTTGTAAACACCTATTCT+TGG | + | chr2_2:4976190-4976209 | Msa0232720:intron | 25.0% |
| ! | TTGAATCAACATGTGTTAAA+TGG | - | chr2_2:4976303-4976322 | None:intergenic | 25.0% |
| !!! | ACACATGTTGATTCAAAATA+TGG | + | chr2_2:4976307-4976326 | Msa0232720:intron | 25.0% |
| !! | TAATGTTTTATGTTTTCTGC+AGG | + | chr2_2:4976400-4976419 | Msa0232720:intron | 25.0% |
| !! | AATGTTTTATGTTTTCTGCA+GGG | + | chr2_2:4976401-4976420 | Msa0232720:intron | 25.0% |
| ! | TTAGGTGATTATTAAAGTGA+TGG | - | chr2_2:4976451-4976470 | None:intergenic | 25.0% |
| ! | TATTGGTATCAATAGAGTTT+AGG | - | chr2_2:4976469-4976488 | None:intergenic | 25.0% |
| !! | TTATTTCTTAACTGTTTCAC+CGG | - | chr2_2:4976602-4976621 | None:intergenic | 25.0% |
| ! | TTTGAATTACACAAATCAGT+TGG | + | chr2_2:4976706-4976725 | Msa0232720:CDS | 25.0% |
| ! | TTGAATTACACAAATCAGTT+GGG | + | chr2_2:4976707-4976726 | Msa0232720:CDS | 25.0% |
| ! | CATTATTTGATACCTTCTTT+AGG | - | chr2_2:4976982-4977001 | None:intergenic | 25.0% |
| !!! | CTAAAGAAATTTTAACCAAG+AGG | - | chr2_2:4977231-4977250 | None:intergenic | 25.0% |
| !! | TTCAGTTTTCTGTATATAGA+TGG | + | chr2_2:4977482-4977501 | Msa0232720:intron | 25.0% |
| !! | TATAAGGTACTTAAAGCAAA+TGG | + | chr2_2:4977530-4977549 | Msa0232720:CDS | 25.0% |
| !!! | GATTGATTGTTATTTGTTGA+TGG | - | chr2_2:4978101-4978120 | None:intergenic | 25.0% |
| ! | AAGTAATAATCATGTTTGCA+TGG | + | chr2_2:4978398-4978417 | Msa0232720:three_prime_UTR | 25.0% |
| AGAAGCCTATATTTGAATCA+AGG | - | chr2_2:4975835-4975854 | None:intergenic | 30.0% | |
| TTGAAACAAATAATACACCG+AGG | + | chr2_2:4975921-4975940 | Msa0232720:five_prime_UTR | 30.0% | |
| TAGTGAACAAAACAAAACTC+AGG | + | chr2_2:4975946-4975965 | Msa0232720:five_prime_UTR | 30.0% | |
| TTTCTTCTAATTTCTCTTCC+AGG | + | chr2_2:4976106-4976125 | Msa0232720:intron | 30.0% | |
| !! | TTCAATTTTGGTCCAAGAAT+AGG | - | chr2_2:4976205-4976224 | None:intergenic | 30.0% |
| !!! | ATCTAGCTTCTGAAATTTTG+TGG | + | chr2_2:4976355-4976374 | Msa0232720:intron | 30.0% |
| ! | ATGTTTTATGTTTTCTGCAG+GGG | + | chr2_2:4976402-4976421 | Msa0232720:intron | 30.0% |
| ! | TTAAAGTGATGGAGAAAGTT+AGG | - | chr2_2:4976440-4976459 | None:intergenic | 30.0% |
| GTTGTTGAAGTTTGGATTAT+TGG | - | chr2_2:4976540-4976559 | None:intergenic | 30.0% | |
| AACAGTTAAGAAATAACAGC+TGG | + | chr2_2:4976606-4976625 | Msa0232720:CDS | 30.0% | |
| TCATATTGTGTATCTGATGT+TGG | - | chr2_2:4976650-4976669 | None:intergenic | 30.0% | |
| TGTGTAATTCAAATCAGCAA+AGG | - | chr2_2:4976699-4976718 | None:intergenic | 30.0% | |
| !!! | GTACTAGTGTTATCGATTTT+CGG | - | chr2_2:4976764-4976783 | None:intergenic | 30.0% |
| ! | TGAGCTTGAGAGATTTTATT+AGG | - | chr2_2:4976881-4976900 | None:intergenic | 30.0% |
| ! | TTTGATACCTTCTTTAGGTT+TGG | - | chr2_2:4976977-4976996 | None:intergenic | 30.0% |
| ! | ATGTTTTATAGTTCCTCGTA+AGG | - | chr2_2:4977058-4977077 | None:intergenic | 30.0% |
| AACATCGTGATATCTTTGTT+AGG | + | chr2_2:4977073-4977092 | Msa0232720:intron | 30.0% | |
| !!! | CATGTTTTTTATGACAAACC+AGG | + | chr2_2:4977130-4977149 | Msa0232720:intron | 30.0% |
| ! | TTTTACATACTCATGATTCC+TGG | - | chr2_2:4977151-4977170 | None:intergenic | 30.0% |
| ACAAAAAAGGAAGAAAACTG+TGG | + | chr2_2:4977581-4977600 | Msa0232720:CDS | 30.0% | |
| CAAAATCTTGCTTCAATTTC+AGG | - | chr2_2:4977699-4977718 | None:intergenic | 30.0% | |
| !! | TCAAACAATGTAGTCTTATG+AGG | - | chr2_2:4977734-4977753 | None:intergenic | 30.0% |
| AGCAATGATGGTTATATCAA+GGG | - | chr2_2:4977850-4977869 | None:intergenic | 30.0% | |
| TAAAATTACCTGAGCAATGA+TGG | - | chr2_2:4977862-4977881 | None:intergenic | 30.0% | |
| TAATAATCATGTTTGCATGG+CGG | + | chr2_2:4978401-4978420 | Msa0232720:three_prime_UTR | 30.0% | |
| TTATTATATGGTCACGGGTT+TGG | - | chr2_2:4975885-4975904 | None:intergenic | 35.0% | |
| !! | TTGTTTTGTTCACTAGACCT+CGG | - | chr2_2:4975941-4975960 | None:intergenic | 35.0% |
| ATGGAGATTTCATCTATCAG+AGG | + | chr2_2:4976141-4976160 | Msa0232720:CDS | 35.0% | |
| TGGAGATTTCATCTATCAGA+GGG | + | chr2_2:4976142-4976161 | Msa0232720:CDS | 35.0% | |
| !! | TCTGAAATTTTGTGGTAGCT+AGG | + | chr2_2:4976363-4976382 | Msa0232720:intron | 35.0% |
| AGCAGAAGCAGTTAAGTTAT+TGG | - | chr2_2:4976486-4976505 | None:intergenic | 35.0% | |
| ! | AACTTAACTGCTTCTGCTTT+TGG | + | chr2_2:4976488-4976507 | Msa0232720:CDS | 35.0% |
| CATGTTCTGTTGTTGAAGTT+TGG | - | chr2_2:4976548-4976567 | None:intergenic | 35.0% | |
| TATTGTGTATCTGATGTTGG+AGG | - | chr2_2:4976647-4976666 | None:intergenic | 35.0% | |
| !! | ATCACTCAAGGTAACTTGTT+TGG | + | chr2_2:4976800-4976819 | Msa0232720:CDS | 35.0% |
| !! | TCACTCAAGGTAACTTGTTT+GGG | + | chr2_2:4976801-4976820 | Msa0232720:CDS | 35.0% |
| !! | CTTGAACAGCTTTAAAGACA+TGG | - | chr2_2:4976835-4976854 | None:intergenic | 35.0% |
| !! | TGTCTTTAAAGCTGTTCAAG+AGG | + | chr2_2:4976835-4976854 | Msa0232720:CDS | 35.0% |
| TCTTGTTCCAAACCTAAAGA+AGG | + | chr2_2:4976967-4976986 | Msa0232720:CDS | 35.0% | |
| TTCTTGAGGAGGAACAAAAA+AGG | + | chr2_2:4977568-4977587 | Msa0232720:CDS | 35.0% | |
| CTACATTGTTTGAAGAGTCA+AGG | + | chr2_2:4977741-4977760 | Msa0232720:CDS | 35.0% | |
| ! | AATAGCAGTTCCTTGACTTT+TGG | + | chr2_2:4977816-4977835 | Msa0232720:CDS | 35.0% |
| ! | ATAGCAGTTCCTTGACTTTT+GGG | + | chr2_2:4977817-4977836 | Msa0232720:CDS | 35.0% |
| GAGCAATGATGGTTATATCA+AGG | - | chr2_2:4977851-4977870 | None:intergenic | 35.0% | |
| TGATATAACCATCATTGCTC+AGG | + | chr2_2:4977851-4977870 | Msa0232720:CDS | 35.0% | |
| ATTGTTTGGCAATTTGCAGA+TGG | + | chr2_2:4978242-4978261 | Msa0232720:intron | 35.0% | |
| AATAATCATGTTTGCATGGC+GGG | + | chr2_2:4978402-4978421 | Msa0232720:three_prime_UTR | 35.0% | |
| !!! | CCTTGAGAGCAAACATTTTT+TGG | - | chr2_2:4978451-4978470 | None:intergenic | 35.0% |
| CCAAAAAATGTTTGCTCTCA+AGG | + | chr2_2:4978448-4978467 | Msa0232720:three_prime_UTR | 35.0% | |
| ! | TCAAGGTTCATTTTGCAGAA+GGG | + | chr2_2:4978465-4978484 | Msa0232720:three_prime_UTR | 35.0% |
| TTCCAGGATGAGTTCTCATA+TGG | + | chr2_2:4976122-4976141 | Msa0232720:intron | 40.0% | |
| TATCAGAGGGTTACCTGAAA+TGG | + | chr2_2:4976155-4976174 | Msa0232720:CDS | 40.0% | |
| ! | ATGTTTTCTGCAGGGGATAA+TGG | + | chr2_2:4976409-4976428 | Msa0232720:intron | 40.0% |
| CTTCAACAACAGAACATGCA+TGG | + | chr2_2:4976550-4976569 | Msa0232720:CDS | 40.0% | |
| ATTGAAGCCTAAGTCTGAGA+TGG | + | chr2_2:4976733-4976752 | Msa0232720:CDS | 40.0% | |
| GCAAACATGTTGATCACTCA+AGG | + | chr2_2:4976788-4976807 | Msa0232720:CDS | 40.0% | |
| TTTCATCTTAGGTCCTTACG+AGG | + | chr2_2:4977042-4977061 | Msa0232720:intron | 40.0% | |
| ! | CGAGTTAGTTGGTATATCGA+GGG | - | chr2_2:4977257-4977276 | None:intergenic | 40.0% |
| CCTCGATATACCAACTAACT+CGG | + | chr2_2:4977255-4977274 | Msa0232720:intron | 40.0% | |
| ATACCAACTAACTCGGATAG+AGG | + | chr2_2:4977262-4977281 | Msa0232720:intron | 40.0% | |
| TTTCCTCTATCCGAGTTAGT+TGG | - | chr2_2:4977268-4977287 | None:intergenic | 40.0% | |
| CAAATGTCATCTTTCCAAGC+AGG | - | chr2_2:4977400-4977419 | None:intergenic | 40.0% | |
| ATGGACAAAGCTTCTGTTCT+TGG | + | chr2_2:4977501-4977520 | Msa0232720:CDS | 40.0% | |
| CTGTTCTTGGAGAAGCTATA+AGG | + | chr2_2:4977514-4977533 | Msa0232720:CDS | 40.0% | |
| AGAGAAAGTGAGTGTTCTTG+AGG | + | chr2_2:4977554-4977573 | Msa0232720:CDS | 40.0% | |
| GGTGAAATTCCCAAAAGTCA+AGG | - | chr2_2:4977829-4977848 | None:intergenic | 40.0% | |
| ! | GGAATTTTGCATGACAGTGA+AGG | + | chr2_2:4978269-4978288 | Msa0232720:CDS | 40.0% |
| ! | CTCAAGGTTCATTTTGCAGA+AGG | + | chr2_2:4978464-4978483 | Msa0232720:three_prime_UTR | 40.0% |
| CACGGGTTTGGATGTGATAT+TGG | - | chr2_2:4975873-4975892 | None:intergenic | 45.0% | |
| CTCCATATGAGAACTCATCC+TGG | - | chr2_2:4976127-4976146 | None:intergenic | 45.0% | |
| !! | TTTTCTGCAGGGGATAATGG+AGG | + | chr2_2:4976412-4976431 | Msa0232720:intron | 45.0% |
| TTTCACCGGTCTTTCGTTTC+CGG | - | chr2_2:4976588-4976607 | None:intergenic | 45.0% | |
| AGCTCATGATCACATCGTAG+CGG | + | chr2_2:4976895-4976914 | Msa0232720:CDS | 45.0% | |
| GGTTTGAACTCTAGACCTCT+TGG | + | chr2_2:4977213-4977232 | Msa0232720:intron | 45.0% | |
| ! | CCGAGTTAGTTGGTATATCG+AGG | - | chr2_2:4977258-4977277 | None:intergenic | 45.0% |
| !! | GTAGCTCAGTTGGTAAGTTG+GGG | - | chr2_2:4977378-4977397 | None:intergenic | 45.0% |
| !! | GGTAGCTCAGTTGGTAAGTT+GGG | - | chr2_2:4977379-4977398 | None:intergenic | 45.0% |
| !! | AGGTAGCTCAGTTGGTAAGT+TGG | - | chr2_2:4977380-4977399 | None:intergenic | 45.0% |
| GAAAGTGAGTGTTCTTGAGG+AGG | + | chr2_2:4977557-4977576 | Msa0232720:CDS | 45.0% | |
| TGGCAATTTGCAGATGGATG+TGG | + | chr2_2:4978248-4978267 | Msa0232720:intron | 45.0% | |
| TGACAGTGAAGGATCTTGTG+AGG | + | chr2_2:4978280-4978299 | Msa0232720:CDS | 45.0% | |
| GGTCTTTCGTTTCCGGTAGA+CGG | - | chr2_2:4976581-4976600 | None:intergenic | 50.0% | |
| GTCTACCGGAAACGAAAGAC+CGG | + | chr2_2:4976580-4976599 | Msa0232720:CDS | 50.0% | |
| GGACACACCATCTCAGACTT+AGG | - | chr2_2:4976743-4976762 | None:intergenic | 50.0% | |
| ! | ATGATCACATCGTAGCGGAG+AGG | + | chr2_2:4976900-4976919 | Msa0232720:CDS | 50.0% |
| CAGACAGAGCGATGAATCGT+TGG | - | chr2_2:4976946-4976965 | None:intergenic | 50.0% | |
| ! | GTAAGTTGGGGTCAGCTACA+TGG | - | chr2_2:4977366-4977385 | None:intergenic | 50.0% |
| TACCAACTGAGCTACCTGCT+TGG | + | chr2_2:4977383-4977402 | Msa0232720:intron | 50.0% | |
| TTCCAAGCAGGTAGCTCAGT+TGG | - | chr2_2:4977388-4977407 | None:intergenic | 50.0% | |
| TGCATGGAGACTCCGTCTAC+CGG | + | chr2_2:4976566-4976585 | Msa0232720:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 4975825 | 4978542 | 4975825 | ID=Msa0232720;Name=Msa0232720 |
| chr2_2 | mRNA | 4975825 | 4978542 | 4975825 | ID=Msa0232720-mRNA-1;Parent=Msa0232720;Name=Msa0232720-mRNA-1;_AED=0.02;_eAED=0.02;_QI=179|1|0.8|1|0.75|0.6|5|207|353 |
| chr2_2 | exon | 4975825 | 4976002 | 4975825 | ID=Msa0232720-mRNA-1:exon:2120;Parent=Msa0232720-mRNA-1 |
| chr2_2 | exon | 4976128 | 4976176 | 4976128 | ID=Msa0232720-mRNA-1:exon:2121;Parent=Msa0232720-mRNA-1 |
| chr2_2 | exon | 4976422 | 4976988 | 4976422 | ID=Msa0232720-mRNA-1:exon:2122;Parent=Msa0232720-mRNA-1 |
| chr2_2 | exon | 4977501 | 4977872 | 4977501 | ID=Msa0232720-mRNA-1:exon:2123;Parent=Msa0232720-mRNA-1 |
| chr2_2 | exon | 4978261 | 4978542 | 4978261 | ID=Msa0232720-mRNA-1:exon:2124;Parent=Msa0232720-mRNA-1 |
| chr2_2 | five_prime_UTR | 4975825 | 4976002 | 4975825 | ID=Msa0232720-mRNA-1:five_prime_utr;Parent=Msa0232720-mRNA-1 |
| chr2_2 | five_prime_UTR | 4976128 | 4976128 | 4976128 | ID=Msa0232720-mRNA-1:five_prime_utr;Parent=Msa0232720-mRNA-1 |
| chr2_2 | CDS | 4976129 | 4976176 | 4976129 | ID=Msa0232720-mRNA-1:cds;Parent=Msa0232720-mRNA-1 |
| chr2_2 | CDS | 4976422 | 4976988 | 4976422 | ID=Msa0232720-mRNA-1:cds;Parent=Msa0232720-mRNA-1 |
| chr2_2 | CDS | 4977501 | 4977872 | 4977501 | ID=Msa0232720-mRNA-1:cds;Parent=Msa0232720-mRNA-1 |
| chr2_2 | CDS | 4978261 | 4978335 | 4978261 | ID=Msa0232720-mRNA-1:cds;Parent=Msa0232720-mRNA-1 |
| chr2_2 | three_prime_UTR | 4978336 | 4978542 | 4978336 | ID=Msa0232720-mRNA-1:three_prime_utr;Parent=Msa0232720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
