AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1297310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1297310 MtrunA17_Chr4g0054421 98.524 271 3 1 1 270 1 271 0.0 550
Msa1297310 MtrunA17_Chr5g0400781 63.860 285 73 8 1 270 1 270 1.00e-102 300
Msa1297310 MtrunA17_Chr1g0175651 62.963 189 48 4 68 255 116 283 2.86e-72 223
Msa1297310 MtrunA17_Chr2g0308611 76.119 134 31 1 108 240 180 313 1.41e-67 213
Msa1297310 MtrunA17_Chr7g0258831 76.984 126 27 1 115 240 150 273 8.49e-66 207
Msa1297310 MtrunA17_Chr5g0399491 68.293 164 42 4 79 240 95 250 2.27e-65 206
Msa1297310 MtrunA17_Chr1g0151971 45.847 301 114 9 5 270 2 288 6.10e-65 204
Msa1297310 MtrunA17_Chr4g0055851 66.667 162 41 2 80 240 85 234 7.91e-65 204
Msa1297310 MtrunA17_Chr8g0335131 82.456 114 19 1 126 238 145 258 6.04e-62 197
Msa1297310 MtrunA17_Chr3g0135331 54.124 194 64 6 90 268 117 300 5.65e-50 166
Msa1297310 MtrunA17_Chr4g0044091 63.866 119 37 1 126 238 64 182 8.02e-49 160
Msa1297310 MtrunA17_Chr2g0299031 44.211 190 93 4 54 239 15 195 1.08e-39 137
Msa1297310 MtrunA17_Chr4g0071411 59.649 114 42 2 129 238 90 203 3.06e-35 125
Msa1297310 MtrunA17_Chr5g0416391 47.664 107 54 1 114 218 62 168 3.38e-21 90.5
Msa1297310 MtrunA17_Chr7g0265521 42.991 107 61 0 108 214 44 150 1.33e-20 87.8
Msa1297310 MtrunA17_Chr3g0119291 35.417 192 112 5 80 261 12 201 2.78e-20 87.4
Msa1297310 MtrunA17_Chr8g0362151 42.735 117 64 1 102 218 55 168 8.95e-20 86.7
Msa1297310 MtrunA17_Chr7g0217111 46.602 103 51 1 118 216 71 173 4.08e-19 84.3
Msa1297310 MtrunA17_Chr6g0450991 50.000 88 44 0 127 214 67 154 5.83e-19 84.3
Msa1297310 MtrunA17_Chr4g0060031 45.455 99 54 0 116 214 84 182 1.99e-17 80.9
Msa1297310 MtrunA17_Chr8g0381741 47.170 106 47 2 118 214 43 148 2.59e-17 80.1
Msa1297310 MtrunA17_Chr3g0123691 37.975 158 85 5 119 265 52 207 2.86e-17 79.7
Msa1297310 MtrunA17_Chr1g0179581 48.193 83 43 0 127 209 28 110 3.12e-17 75.5
Msa1297310 MtrunA17_Chr6g0453021 45.192 104 49 2 118 213 86 189 6.64e-17 78.6
Msa1297310 MtrunA17_Chr5g0415941 40.000 135 65 3 87 213 54 180 7.56e-17 79.0
Msa1297310 MtrunA17_Chr8g0362751 46.809 94 43 1 127 213 89 182 5.92e-16 75.9
Msa1297310 MtrunA17_Chr5g0403701 43.689 103 53 1 119 221 45 142 8.47e-13 65.9
Msa1297310 MtrunA17_Chr5g0403691 42.857 105 58 1 119 221 45 149 9.16e-13 65.9
Msa1297310 MtrunA17_Chr3g0127511 43.011 93 46 1 130 215 41 133 2.62e-12 65.1
Msa1297310 MtrunA17_Chr8g0346251 42.683 82 47 0 131 212 45 126 1.85e-11 62.8
Msa1297310 MtrunA17_Chr5g0410711 35.849 106 68 0 118 223 83 188 3.85e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1297310 AT4G37790.1 61.806 288 82 9 1 270 1 278 2.61e-91 271
Msa1297310 AT2G22800.1 58.163 294 79 11 1 270 1 274 2.63e-83 251
Msa1297310 AT5G06710.1 61.376 189 56 4 76 254 136 317 4.99e-70 219
Msa1297310 AT5G47370.1 57.789 199 74 4 72 264 70 264 1.75e-66 208
Msa1297310 AT3G60390.1 60.656 183 57 6 69 238 94 274 1.22e-62 199
Msa1297310 AT4G17460.1 60.221 181 64 5 68 241 71 250 4.76e-62 197
Msa1297310 AT4G16780.1 75.194 129 30 2 112 239 115 242 2.00e-61 196
Msa1297310 AT2G44910.1 79.130 115 23 1 126 239 162 276 7.21e-59 190
Msa1297310 AT2G01430.1 54.676 139 56 2 106 239 113 249 2.42e-44 151
Msa1297310 AT1G70920.2 52.941 136 57 1 114 249 26 154 1.03e-40 139
Msa1297310 AT1G70920.1 56.349 126 48 1 114 239 56 174 1.19e-40 140
Msa1297310 AT5G06710.4 59.292 113 29 4 76 178 136 241 5.02e-30 114
Msa1297310 AT2G01430.2 50.526 95 40 2 106 195 113 205 1.12e-22 93.2
Msa1297310 AT1G69780.1 46.465 99 53 0 116 214 74 172 7.54e-20 87.4
Msa1297310 AT1G26960.1 41.964 112 65 0 119 230 63 174 2.21e-19 85.1
Msa1297310 AT5G03790.1 35.374 147 79 2 127 257 77 223 3.75e-18 81.6
Msa1297310 AT5G65310.1 45.000 100 48 1 122 214 67 166 1.60e-16 78.2
Msa1297310 AT3G01470.1 45.161 93 44 1 127 212 68 160 1.81e-16 77.4
Msa1297310 AT5G65310.2 45.000 100 48 1 122 214 49 148 1.98e-16 77.8
Msa1297310 AT2G18550.1 44.000 100 56 0 114 213 48 147 8.11e-16 74.7
Msa1297310 AT5G03790.2 47.253 91 48 0 127 217 77 167 9.71e-16 73.9
Msa1297310 AT5G15150.1 42.478 113 56 3 113 216 96 208 1.32e-15 75.9
Msa1297310 AT4G36740.2 44.681 94 52 0 120 213 49 142 2.40e-15 73.6
Msa1297310 AT4G36740.1 44.681 94 52 0 120 213 48 141 2.44e-15 73.6
Msa1297310 AT4G40060.1 44.330 97 47 1 125 214 57 153 2.55e-15 74.7
Msa1297310 AT3G01220.1 43.269 104 53 2 119 216 77 180 2.91e-15 74.3
Msa1297310 AT1G27045.4 46.875 96 44 1 127 215 68 163 4.78e-15 73.2
Msa1297310 AT1G27045.1 40.909 132 62 3 127 250 68 191 5.93e-15 72.4
Msa1297310 AT1G27045.2 57.576 66 28 0 127 192 17 82 8.87e-15 70.9
Msa1297310 AT1G27045.5 57.576 66 28 0 127 192 25 90 9.67e-15 71.2
Msa1297310 AT1G27045.3 57.576 66 28 0 127 192 25 90 9.67e-15 71.2
Msa1297310 AT2G36610.1 40.816 98 50 1 126 215 70 167 3.41e-14 69.7
Msa1297310 AT2G22430.1 43.750 96 50 1 125 216 60 155 7.56e-14 70.5
Msa1297310 AT2G46680.1 43.011 93 49 1 130 218 35 127 1.56e-13 68.9
Msa1297310 AT2G46680.2 41.111 90 53 0 130 219 35 124 1.57e-13 68.9
Msa1297310 AT5G06710.2 51.163 86 25 4 76 151 136 214 4.12e-12 64.7
Msa1297310 AT5G06710.3 51.163 86 25 4 76 151 136 214 4.12e-12 64.7
Msa1297310 AT3G61890.1 38.947 95 44 1 130 210 33 127 2.74e-11 62.4
Msa1297310 AT5G66700.1 44.872 78 43 0 115 192 59 136 6.59e-11 61.2
Msa1297310 AT1G79840.1 43.373 83 46 1 126 207 102 184 9.84e-11 62.4

Find 74 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAGAGAAATTGCTCTTAT+TGG 0.187884 8_3:-57404328 None:intergenic
CTAGGTGGTGGTGGTGTTAA+TGG 0.243245 8_3:+57404297 Msa1297310:CDS
TCAGGCCTTCAACTTATTCT+AGG 0.257483 8_3:+57403111 Msa1297310:CDS
ATGTTTCACAACATTTCTTT+AGG 0.284664 8_3:-57404152 None:intergenic
GGTACCTGGCTCTACGGTTC+TGG 0.298360 8_3:-57403691 None:intergenic
AGAGAGAGAGATTGGTAATA+AGG 0.313031 8_3:-57403043 None:intergenic
TTATGATTACTTGAGGAATA+AGG 0.345806 8_3:-57403192 None:intergenic
AAGCATAGCAGATTGATCTT+TGG 0.351274 8_3:-57403472 None:intergenic
GGATGGTGGTGTGTCTTGTT+TGG 0.360529 8_3:-57403151 None:intergenic
TCTCTCTTGAGTTATCTTGA+TGG 0.382425 8_3:+57403059 Msa1297310:exon
CTCTCTTGAGTTATCTTGAT+GGG 0.399406 8_3:+57403060 Msa1297310:exon
TGTGAACTATGAAAGGGTTA+AGG 0.429954 8_3:+57404490 Msa1297310:three_prime_UTR
ATAACTCAAGAGAGAGAGAT+TGG 0.433571 8_3:-57403051 None:intergenic
TGTTAGCAGTGAATTAGAAA+TGG 0.445208 8_3:+57403362 Msa1297310:CDS
CACATGAAGGACACATAGTA+AGG 0.448920 8_3:-57404269 None:intergenic
AAGAGAAGAGAAGAAAGGTA+AGG 0.451793 8_3:-57402995 None:intergenic
AGGCTTTGTAACGTTGTTGT+TGG 0.454137 8_3:-57403172 None:intergenic
AATTTACAAACATAGAATAT+AGG 0.457840 8_3:-57404585 None:intergenic
GTGAACTATGAAAGGGTTAA+GGG 0.460344 8_3:+57404491 Msa1297310:three_prime_UTR
AAACATTAACAGAAGAGAAT+AGG 0.467293 8_3:+57404169 Msa1297310:CDS
AAGAAAGGTAAGGGAAGAGT+GGG 0.469487 8_3:-57402985 None:intergenic
GCTGAACCATCTTTAACGTT+GGG 0.469771 8_3:+57403225 Msa1297310:CDS
AAAGGAGGTGCAAGAATTGA+AGG 0.482533 8_3:+57404200 Msa1297310:CDS
AGCTGAACCATCTTTAACGT+TGG 0.482898 8_3:+57403224 Msa1297310:CDS
CTAAGCCTAGAATAAGTTGA+AGG 0.488952 8_3:-57403116 None:intergenic
GAAGAAAGGTAAGGGAAGAG+TGG 0.493787 8_3:-57402986 None:intergenic
TTGTTTCATCTTTCTCTAGT+GGG 0.496061 8_3:+57403319 Msa1297310:CDS
AAATGTATGTGAACTATGAA+AGG 0.497564 8_3:+57404483 Msa1297310:three_prime_UTR
TTCTTCATAGTAACTCTTGG+TGG 0.498912 8_3:-57403253 None:intergenic
AGGTGTTAGATTTAACTCTC+TGG 0.498987 8_3:-57403648 None:intergenic
TTCATCTTTCTCTAGTGGGA+GGG 0.505690 8_3:+57403323 Msa1297310:CDS
CACCTCGACAAGTTGAGGTC+TGG 0.514656 8_3:+57403666 Msa1297310:CDS
GTAAGGGTAGCTGCTGGCAT+AGG 0.516800 8_3:-57404252 None:intergenic
GTTGTTTCATCTTTCTCTAG+TGG 0.516924 8_3:+57403318 Msa1297310:CDS
AGGTTCTTCATAGTAACTCT+TGG 0.520099 8_3:-57403256 None:intergenic
AAGGGAAGAGAAGAGAAGAA+AGG 0.520574 8_3:-57403000 None:intergenic
GGTTCCAGAACCGTAGAGCC+AGG 0.526669 8_3:+57403687 Msa1297310:CDS
AATGTATGTGAACTATGAAA+GGG 0.527889 8_3:+57404484 Msa1297310:three_prime_UTR
TTTCATCTTTCTCTAGTGGG+AGG 0.528407 8_3:+57403322 Msa1297310:CDS
AGAGAAGAGAAGAAAGGTAA+GGG 0.528734 8_3:-57402994 None:intergenic
GTGAAGGGGTTGTAAAAGTG+AGG 0.536068 8_3:-57404351 None:intergenic
TTTGTAACGTTGTTGTTGGA+TGG 0.545023 8_3:-57403168 None:intergenic
GATAAACCCAACGTTAAAGA+TGG 0.545369 8_3:-57403231 None:intergenic
TGTTTAGGTACCTGGCTCTA+CGG 0.545452 8_3:-57403697 None:intergenic
AGAGAATAGGAGGCTACAAA+AGG 0.550932 8_3:+57404182 Msa1297310:CDS
GTAAACATGGATCTATATGA+AGG 0.551801 8_3:+57404614 Msa1297310:three_prime_UTR
AGAAATGGAAACGACGGAGA+TGG 0.553541 8_3:+57403377 Msa1297310:CDS
TGCTGGCATAGGCATATACA+AGG 0.554332 8_3:-57404241 None:intergenic
AAAGCTGAAGCAAACAGAAG+TGG 0.566126 8_3:+57404119 Msa1297310:CDS
GTAAATTACTATAGTAAACA+TGG 0.567162 8_3:+57404601 Msa1297310:three_prime_UTR
TGTGAGAGACTAGGTGGTGG+TGG 0.571619 8_3:+57404288 Msa1297310:CDS
TCTAACACCTCGACAAGTTG+AGG 0.578186 8_3:+57403661 Msa1297310:CDS
CATTAACAGAAGAGAATAGG+AGG 0.587793 8_3:+57404172 Msa1297310:CDS
ATAGTTGTTATGATTACTTG+AGG 0.592747 8_3:-57403199 None:intergenic
AAGACGGTGCCACTGCAGCT+AGG 0.595899 8_3:+57403433 Msa1297310:CDS
CCACCTAGTCTCTCACATGA+AGG 0.597382 8_3:-57404282 None:intergenic
AAGCTTCTTCCTAGCTGCAG+TGG 0.601402 8_3:-57403442 None:intergenic
CACATAGTAAGGGTAGCTGC+TGG 0.601478 8_3:-57404258 None:intergenic
CAAGATGCTAGTAACAACTC+AGG 0.601537 8_3:+57403093 Msa1297310:CDS
GTAACGTTGTTGTTGGATGG+TGG 0.602624 8_3:-57403165 None:intergenic
GAATAGGAGGCTACAAAAGG+AGG 0.603538 8_3:+57404185 Msa1297310:CDS
GGTGGTGGTGGTGTTAATGG+TGG 0.605462 8_3:+57404300 Msa1297310:CDS
TGCTGCTGAAGAATTTGTGA+AGG 0.622725 8_3:-57404367 None:intergenic
AACCAGACCTCAACTTGTCG+AGG 0.626268 8_3:-57403668 None:intergenic
TGAATTAGAAATGGAAACGA+CGG 0.634393 8_3:+57403371 Msa1297310:CDS
GCTGCTGAAGAATTTGTGAA+GGG 0.658168 8_3:-57404366 None:intergenic
ACATGAAGGACACATAGTAA+GGG 0.658983 8_3:-57404268 None:intergenic
CCTTCATGTGAGAGACTAGG+TGG 0.665742 8_3:+57404282 Msa1297310:CDS
GATGAAACAACGCTGTGATG+AGG 0.669037 8_3:-57403306 None:intergenic
TCATGTGAGAGACTAGGTGG+TGG 0.669612 8_3:+57404285 Msa1297310:CDS
ATCAGCGACGAAGATGAAGA+CGG 0.679700 8_3:+57403417 Msa1297310:CDS
TGTCCTTCATGTGAGAGACT+AGG 0.681664 8_3:+57404279 Msa1297310:CDS
CTGCTGAAGAATTTGTGAAG+GGG 0.685286 8_3:-57404365 None:intergenic
GCTGGCATAGGCATATACAA+GGG 0.757470 8_3:-57404240 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTTGATAAATAAATG+AGG - chr8_3:57403594-57403613 None:intergenic 10.0%
!! TTATGTATATATTTATGTTT+AGG - chr8_3:57403715-57403734 None:intergenic 10.0%
!!! TGTTATATTAACATTATTTT+TGG + chr8_3:57404072-57404091 Msa1297310:intron 10.0%
!! AAAAATTTGATAAATAAATG+AGG - chr8_3:57403594-57403613 None:intergenic 10.0%
!! TTATGTATATATTTATGTTT+AGG - chr8_3:57403715-57403734 None:intergenic 10.0%
!!! TGTTATATTAACATTATTTT+TGG + chr8_3:57404072-57404091 Msa1297310:intron 10.0%
!!! TATTTATCAAATTTTTGTGA+TGG + chr8_3:57403598-57403617 Msa1297310:intron 15.0%
!! AATTAAATTAAACTCAACTA+TGG + chr8_3:57403755-57403774 Msa1297310:intron 15.0%
!! TATTATCTTCAGATTAATTA+AGG + chr8_3:57403898-57403917 Msa1297310:intron 15.0%
!! ATTATCTTCAGATTAATTAA+GGG + chr8_3:57403899-57403918 Msa1297310:intron 15.0%
!! GTACACATATTATAAATTAT+GGG + chr8_3:57404025-57404044 Msa1297310:intron 15.0%
!!! TATTAACATTATTTTTGGTT+TGG + chr8_3:57404077-57404096 Msa1297310:intron 15.0%
!! AATTTACAAACATAGAATAT+AGG - chr8_3:57404588-57404607 None:intergenic 15.0%
!!! TATTTATCAAATTTTTGTGA+TGG + chr8_3:57403598-57403617 Msa1297310:intron 15.0%
!! AATTAAATTAAACTCAACTA+TGG + chr8_3:57403755-57403774 Msa1297310:intron 15.0%
!! TATTATCTTCAGATTAATTA+AGG + chr8_3:57403898-57403917 Msa1297310:intron 15.0%
!! ATTATCTTCAGATTAATTAA+GGG + chr8_3:57403899-57403918 Msa1297310:intron 15.0%
!! GTACACATATTATAAATTAT+GGG + chr8_3:57404025-57404044 Msa1297310:intron 15.0%
!!! TATTAACATTATTTTTGGTT+TGG + chr8_3:57404077-57404096 Msa1297310:intron 15.0%
!! AATTTACAAACATAGAATAT+AGG - chr8_3:57404588-57404607 None:intergenic 15.0%
!! ATCTGAAGATAATATTTCAT+TGG - chr8_3:57403892-57403911 None:intergenic 20.0%
!! ATTTCAATTCAACTTATTCT+GGG - chr8_3:57403975-57403994 None:intergenic 20.0%
!! TATTTCAATTCAACTTATTC+TGG - chr8_3:57403976-57403995 None:intergenic 20.0%
!! CGTACACATATTATAAATTA+TGG + chr8_3:57404024-57404043 Msa1297310:intron 20.0%
!!! ATTATTTTTGGTTTGGATTT+TGG + chr8_3:57404084-57404103 Msa1297310:intron 20.0%
!!! TTATTTTTGGTTTGGATTTT+GGG + chr8_3:57404085-57404104 Msa1297310:intron 20.0%
!!! TTTGTATTTTTTTGGTTGAA+GGG + chr8_3:57404460-57404479 Msa1297310:three_prime_UTR 20.0%
!! GTAAATTACTATAGTAAACA+TGG + chr8_3:57404601-57404620 Msa1297310:three_prime_UTR 20.0%
!! ATCTGAAGATAATATTTCAT+TGG - chr8_3:57403892-57403911 None:intergenic 20.0%
!! ATTTCAATTCAACTTATTCT+GGG - chr8_3:57403975-57403994 None:intergenic 20.0%
!! TATTTCAATTCAACTTATTC+TGG - chr8_3:57403976-57403995 None:intergenic 20.0%
!! CGTACACATATTATAAATTA+TGG + chr8_3:57404024-57404043 Msa1297310:intron 20.0%
!!! ATTATTTTTGGTTTGGATTT+TGG + chr8_3:57404084-57404103 Msa1297310:intron 20.0%
!!! TTATTTTTGGTTTGGATTTT+GGG + chr8_3:57404085-57404104 Msa1297310:intron 20.0%
!!! TTTGTATTTTTTTGGTTGAA+GGG + chr8_3:57404460-57404479 Msa1297310:three_prime_UTR 20.0%
!! GTAAATTACTATAGTAAACA+TGG + chr8_3:57404601-57404620 Msa1297310:three_prime_UTR 20.0%
!!! TTTTTGTTTTGTGAAAGGAA+GGG - chr8_3:57403021-57403040 None:intergenic 25.0%
! TTATGATTACTTGAGGAATA+AGG - chr8_3:57403195-57403214 None:intergenic 25.0%
! ATAGTTGTTATGATTACTTG+AGG - chr8_3:57403202-57403221 None:intergenic 25.0%
! GAGATTATGATTATGATTAC+AGG - chr8_3:57403531-57403550 None:intergenic 25.0%
! TATATTTATGTTTAGGTACC+TGG - chr8_3:57403708-57403727 None:intergenic 25.0%
!!! TCAACTATGGTTTTAAATTG+CGG + chr8_3:57403768-57403787 Msa1297310:intron 25.0%
! GGTGATATATGATATTTATG+TGG - chr8_3:57403927-57403946 None:intergenic 25.0%
! CCATTTACAATAGTATGTAT+GGG - chr8_3:57403948-57403967 None:intergenic 25.0%
! TCCATTTACAATAGTATGTA+TGG - chr8_3:57403949-57403968 None:intergenic 25.0%
! TACATACTATTGTAAATGGA+TGG + chr8_3:57403949-57403968 Msa1297310:intron 25.0%
! ATGTTTCACAACATTTCTTT+AGG - chr8_3:57404155-57404174 None:intergenic 25.0%
! AAACATTAACAGAAGAGAAT+AGG + chr8_3:57404169-57404188 Msa1297310:CDS 25.0%
! AAAAAATACAAAGGTTGTGT+GGG - chr8_3:57404452-57404471 None:intergenic 25.0%
! AAAAAAATACAAAGGTTGTG+TGG - chr8_3:57404453-57404472 None:intergenic 25.0%
!!! ACACAACCTTTGTATTTTTT+TGG + chr8_3:57404452-57404471 Msa1297310:three_prime_UTR 25.0%
! CTTCAACCAAAAAAATACAA+AGG - chr8_3:57404461-57404480 None:intergenic 25.0%
!!! CTTTGTATTTTTTTGGTTGA+AGG + chr8_3:57404459-57404478 Msa1297310:three_prime_UTR 25.0%
! AAATGTATGTGAACTATGAA+AGG + chr8_3:57404483-57404502 Msa1297310:three_prime_UTR 25.0%
! AATGTATGTGAACTATGAAA+GGG + chr8_3:57404484-57404503 Msa1297310:three_prime_UTR 25.0%
!!! TCAATTGTTCATTTTTGTTG+TGG + chr8_3:57404655-57404674 Msa1297310:three_prime_UTR 25.0%
!!! CAATTGTTCATTTTTGTTGT+GGG + chr8_3:57404656-57404675 Msa1297310:three_prime_UTR 25.0%
!!! TTTTTGTTTTGTGAAAGGAA+GGG - chr8_3:57403021-57403040 None:intergenic 25.0%
! TTATGATTACTTGAGGAATA+AGG - chr8_3:57403195-57403214 None:intergenic 25.0%
! ATAGTTGTTATGATTACTTG+AGG - chr8_3:57403202-57403221 None:intergenic 25.0%
! GAGATTATGATTATGATTAC+AGG - chr8_3:57403531-57403550 None:intergenic 25.0%
! TATATTTATGTTTAGGTACC+TGG - chr8_3:57403708-57403727 None:intergenic 25.0%
!!! TCAACTATGGTTTTAAATTG+CGG + chr8_3:57403768-57403787 Msa1297310:intron 25.0%
! GGTGATATATGATATTTATG+TGG - chr8_3:57403927-57403946 None:intergenic 25.0%
! CCATTTACAATAGTATGTAT+GGG - chr8_3:57403948-57403967 None:intergenic 25.0%
! TCCATTTACAATAGTATGTA+TGG - chr8_3:57403949-57403968 None:intergenic 25.0%
! TACATACTATTGTAAATGGA+TGG + chr8_3:57403949-57403968 Msa1297310:intron 25.0%
! ATGTTTCACAACATTTCTTT+AGG - chr8_3:57404155-57404174 None:intergenic 25.0%
! AAACATTAACAGAAGAGAAT+AGG + chr8_3:57404169-57404188 Msa1297310:CDS 25.0%
! AAAAAATACAAAGGTTGTGT+GGG - chr8_3:57404452-57404471 None:intergenic 25.0%
! AAAAAAATACAAAGGTTGTG+TGG - chr8_3:57404453-57404472 None:intergenic 25.0%
!!! ACACAACCTTTGTATTTTTT+TGG + chr8_3:57404452-57404471 Msa1297310:three_prime_UTR 25.0%
! CTTCAACCAAAAAAATACAA+AGG - chr8_3:57404461-57404480 None:intergenic 25.0%
!!! CTTTGTATTTTTTTGGTTGA+AGG + chr8_3:57404459-57404478 Msa1297310:three_prime_UTR 25.0%
! AAATGTATGTGAACTATGAA+AGG + chr8_3:57404483-57404502 Msa1297310:three_prime_UTR 25.0%
! AATGTATGTGAACTATGAAA+GGG + chr8_3:57404484-57404503 Msa1297310:three_prime_UTR 25.0%
!!! TCAATTGTTCATTTTTGTTG+TGG + chr8_3:57404655-57404674 Msa1297310:three_prime_UTR 25.0%
!!! GTTTTTGTTTTGTGAAAGGA+AGG - chr8_3:57403022-57403041 None:intergenic 30.0%
!!! AGGTGTTTTTGTTTTGTGAA+AGG - chr8_3:57403026-57403045 None:intergenic 30.0%
GTTTGTGTAGAAAAATCAAG+AGG - chr8_3:57403279-57403298 None:intergenic 30.0%
TTGTTTCATCTTTCTCTAGT+GGG + chr8_3:57403319-57403338 Msa1297310:CDS 30.0%
TGTTAGCAGTGAATTAGAAA+TGG + chr8_3:57403362-57403381 Msa1297310:CDS 30.0%
TGAATTAGAAATGGAAACGA+CGG + chr8_3:57403371-57403390 Msa1297310:CDS 30.0%
ACTTATATTGCAGTACACAA+CGG - chr8_3:57403862-57403881 None:intergenic 30.0%
CCCATACATACTATTGTAAA+TGG + chr8_3:57403945-57403964 Msa1297310:intron 30.0%
CTTAGAGAAATTGCTCTTAT+TGG - chr8_3:57404331-57404350 None:intergenic 30.0%
GTAAACATGGATCTATATGA+AGG + chr8_3:57404614-57404633 Msa1297310:three_prime_UTR 30.0%
!!! GTTTTTGTTTTGTGAAAGGA+AGG - chr8_3:57403022-57403041 None:intergenic 30.0%
!!! AGGTGTTTTTGTTTTGTGAA+AGG - chr8_3:57403026-57403045 None:intergenic 30.0%
GTTTGTGTAGAAAAATCAAG+AGG - chr8_3:57403279-57403298 None:intergenic 30.0%
TTGTTTCATCTTTCTCTAGT+GGG + chr8_3:57403319-57403338 Msa1297310:CDS 30.0%
TGTTAGCAGTGAATTAGAAA+TGG + chr8_3:57403362-57403381 Msa1297310:CDS 30.0%
TGAATTAGAAATGGAAACGA+CGG + chr8_3:57403371-57403390 Msa1297310:CDS 30.0%
ACTTATATTGCAGTACACAA+CGG - chr8_3:57403862-57403881 None:intergenic 30.0%
CCCATACATACTATTGTAAA+TGG + chr8_3:57403945-57403964 Msa1297310:intron 30.0%
CTTAGAGAAATTGCTCTTAT+TGG - chr8_3:57404331-57404350 None:intergenic 30.0%
GTAAACATGGATCTATATGA+AGG + chr8_3:57404614-57404633 Msa1297310:three_prime_UTR 30.0%
AGAGAAGAGAAGAAAGGTAA+GGG - chr8_3:57402997-57403016 None:intergenic 35.0%
AAGAGAAGAGAAGAAAGGTA+AGG - chr8_3:57402998-57403017 None:intergenic 35.0%
! AGAGAGAGAGATTGGTAATA+AGG - chr8_3:57403046-57403065 None:intergenic 35.0%
ATAACTCAAGAGAGAGAGAT+TGG - chr8_3:57403054-57403073 None:intergenic 35.0%
TCTCTCTTGAGTTATCTTGA+TGG + chr8_3:57403059-57403078 Msa1297310:exon 35.0%
CTCTCTTGAGTTATCTTGAT+GGG + chr8_3:57403060-57403079 Msa1297310:exon 35.0%
! CTAAGCCTAGAATAAGTTGA+AGG - chr8_3:57403119-57403138 None:intergenic 35.0%
! TTTGTAACGTTGTTGTTGGA+TGG - chr8_3:57403171-57403190 None:intergenic 35.0%
GATAAACCCAACGTTAAAGA+TGG - chr8_3:57403234-57403253 None:intergenic 35.0%
TTCTTCATAGTAACTCTTGG+TGG - chr8_3:57403256-57403275 None:intergenic 35.0%
AGGTTCTTCATAGTAACTCT+TGG - chr8_3:57403259-57403278 None:intergenic 35.0%
! GTTGTTTCATCTTTCTCTAG+TGG + chr8_3:57403318-57403337 Msa1297310:CDS 35.0%
AAGCATAGCAGATTGATCTT+TGG - chr8_3:57403475-57403494 None:intergenic 35.0%
AGGTGTTAGATTTAACTCTC+TGG - chr8_3:57403651-57403670 None:intergenic 35.0%
! TAAATTGCGGTTGCAGTTTT+TGG + chr8_3:57403781-57403800 Msa1297310:intron 35.0%
CATTAACAGAAGAGAATAGG+AGG + chr8_3:57404172-57404191 Msa1297310:CDS 35.0%
ACATGAAGGACACATAGTAA+GGG - chr8_3:57404271-57404290 None:intergenic 35.0%
TGTGAACTATGAAAGGGTTA+AGG + chr8_3:57404490-57404509 Msa1297310:three_prime_UTR 35.0%
GTGAACTATGAAAGGGTTAA+GGG + chr8_3:57404491-57404510 Msa1297310:three_prime_UTR 35.0%
AGAGAAGAGAAGAAAGGTAA+GGG - chr8_3:57402997-57403016 None:intergenic 35.0%
AAGAGAAGAGAAGAAAGGTA+AGG - chr8_3:57402998-57403017 None:intergenic 35.0%
! AGAGAGAGAGATTGGTAATA+AGG - chr8_3:57403046-57403065 None:intergenic 35.0%
ATAACTCAAGAGAGAGAGAT+TGG - chr8_3:57403054-57403073 None:intergenic 35.0%
TCTCTCTTGAGTTATCTTGA+TGG + chr8_3:57403059-57403078 Msa1297310:exon 35.0%
CTCTCTTGAGTTATCTTGAT+GGG + chr8_3:57403060-57403079 Msa1297310:exon 35.0%
! CTAAGCCTAGAATAAGTTGA+AGG - chr8_3:57403119-57403138 None:intergenic 35.0%
! TTTGTAACGTTGTTGTTGGA+TGG - chr8_3:57403171-57403190 None:intergenic 35.0%
GATAAACCCAACGTTAAAGA+TGG - chr8_3:57403234-57403253 None:intergenic 35.0%
TTCTTCATAGTAACTCTTGG+TGG - chr8_3:57403256-57403275 None:intergenic 35.0%
AGGTTCTTCATAGTAACTCT+TGG - chr8_3:57403259-57403278 None:intergenic 35.0%
! GTTGTTTCATCTTTCTCTAG+TGG + chr8_3:57403318-57403337 Msa1297310:CDS 35.0%
AAGCATAGCAGATTGATCTT+TGG - chr8_3:57403475-57403494 None:intergenic 35.0%
AGGTGTTAGATTTAACTCTC+TGG - chr8_3:57403651-57403670 None:intergenic 35.0%
! TAAATTGCGGTTGCAGTTTT+TGG + chr8_3:57403781-57403800 Msa1297310:intron 35.0%
CATTAACAGAAGAGAATAGG+AGG + chr8_3:57404172-57404191 Msa1297310:CDS 35.0%
ACATGAAGGACACATAGTAA+GGG - chr8_3:57404271-57404290 None:intergenic 35.0%
TGTGAACTATGAAAGGGTTA+AGG + chr8_3:57404490-57404509 Msa1297310:three_prime_UTR 35.0%
GTGAACTATGAAAGGGTTAA+GGG + chr8_3:57404491-57404510 Msa1297310:three_prime_UTR 35.0%
AAGGGAAGAGAAGAGAAGAA+AGG - chr8_3:57403003-57403022 None:intergenic 40.0%
CAAGATGCTAGTAACAACTC+AGG + chr8_3:57403093-57403112 Msa1297310:CDS 40.0%
TCAGGCCTTCAACTTATTCT+AGG + chr8_3:57403111-57403130 Msa1297310:CDS 40.0%
! AGGCTTTGTAACGTTGTTGT+TGG - chr8_3:57403175-57403194 None:intergenic 40.0%
AGCTGAACCATCTTTAACGT+TGG + chr8_3:57403224-57403243 Msa1297310:CDS 40.0%
GCTGAACCATCTTTAACGTT+GGG + chr8_3:57403225-57403244 Msa1297310:CDS 40.0%
TTTCATCTTTCTCTAGTGGG+AGG + chr8_3:57403322-57403341 Msa1297310:CDS 40.0%
TTCATCTTTCTCTAGTGGGA+GGG + chr8_3:57403323-57403342 Msa1297310:CDS 40.0%
AAAGCTGAAGCAAACAGAAG+TGG + chr8_3:57404119-57404138 Msa1297310:CDS 40.0%
AGAGAATAGGAGGCTACAAA+AGG + chr8_3:57404182-57404201 Msa1297310:CDS 40.0%
! AAAGGAGGTGCAAGAATTGA+AGG + chr8_3:57404200-57404219 Msa1297310:CDS 40.0%
CACATGAAGGACACATAGTA+AGG - chr8_3:57404272-57404291 None:intergenic 40.0%
CTGCTGAAGAATTTGTGAAG+GGG - chr8_3:57404368-57404387 None:intergenic 40.0%
GCTGCTGAAGAATTTGTGAA+GGG - chr8_3:57404369-57404388 None:intergenic 40.0%
TGCTGCTGAAGAATTTGTGA+AGG - chr8_3:57404370-57404389 None:intergenic 40.0%
AAGGGAAGAGAAGAGAAGAA+AGG - chr8_3:57403003-57403022 None:intergenic 40.0%
CAAGATGCTAGTAACAACTC+AGG + chr8_3:57403093-57403112 Msa1297310:CDS 40.0%
TCAGGCCTTCAACTTATTCT+AGG + chr8_3:57403111-57403130 Msa1297310:CDS 40.0%
! AGGCTTTGTAACGTTGTTGT+TGG - chr8_3:57403175-57403194 None:intergenic 40.0%
AGCTGAACCATCTTTAACGT+TGG + chr8_3:57403224-57403243 Msa1297310:CDS 40.0%
GCTGAACCATCTTTAACGTT+GGG + chr8_3:57403225-57403244 Msa1297310:CDS 40.0%
TTTCATCTTTCTCTAGTGGG+AGG + chr8_3:57403322-57403341 Msa1297310:CDS 40.0%
TTCATCTTTCTCTAGTGGGA+GGG + chr8_3:57403323-57403342 Msa1297310:CDS 40.0%
AAAGCTGAAGCAAACAGAAG+TGG + chr8_3:57404119-57404138 Msa1297310:CDS 40.0%
AGAGAATAGGAGGCTACAAA+AGG + chr8_3:57404182-57404201 Msa1297310:CDS 40.0%
! AAAGGAGGTGCAAGAATTGA+AGG + chr8_3:57404200-57404219 Msa1297310:CDS 40.0%
CACATGAAGGACACATAGTA+AGG - chr8_3:57404272-57404291 None:intergenic 40.0%
CTGCTGAAGAATTTGTGAAG+GGG - chr8_3:57404368-57404387 None:intergenic 40.0%
GCTGCTGAAGAATTTGTGAA+GGG - chr8_3:57404369-57404388 None:intergenic 40.0%
TGCTGCTGAAGAATTTGTGA+AGG - chr8_3:57404370-57404389 None:intergenic 40.0%
GAAGAAAGGTAAGGGAAGAG+TGG - chr8_3:57402989-57403008 None:intergenic 45.0%
! GTAACGTTGTTGTTGGATGG+TGG - chr8_3:57403168-57403187 None:intergenic 45.0%
GATGAAACAACGCTGTGATG+AGG - chr8_3:57403309-57403328 None:intergenic 45.0%
AGAAATGGAAACGACGGAGA+TGG + chr8_3:57403377-57403396 Msa1297310:CDS 45.0%
ATCAGCGACGAAGATGAAGA+CGG + chr8_3:57403417-57403436 Msa1297310:CDS 45.0%
TCTAACACCTCGACAAGTTG+AGG + chr8_3:57403661-57403680 Msa1297310:CDS 45.0%
!! TGTTTAGGTACCTGGCTCTA+CGG - chr8_3:57403700-57403719 None:intergenic 45.0%
!! ATTGCGGTTGCAGTTTTTGG+TGG + chr8_3:57403784-57403803 Msa1297310:intron 45.0%
! GCAGTACACAACGGTTTTTG+AGG - chr8_3:57403853-57403872 None:intergenic 45.0%
GAATAGGAGGCTACAAAAGG+AGG + chr8_3:57404185-57404204 Msa1297310:CDS 45.0%
GCTGGCATAGGCATATACAA+GGG - chr8_3:57404243-57404262 None:intergenic 45.0%
TGCTGGCATAGGCATATACA+AGG - chr8_3:57404244-57404263 None:intergenic 45.0%
TGTCCTTCATGTGAGAGACT+AGG + chr8_3:57404279-57404298 Msa1297310:CDS 45.0%
GTGAAGGGGTTGTAAAAGTG+AGG - chr8_3:57404354-57404373 None:intergenic 45.0%
GAAGAAAGGTAAGGGAAGAG+TGG - chr8_3:57402989-57403008 None:intergenic 45.0%
! GTAACGTTGTTGTTGGATGG+TGG - chr8_3:57403168-57403187 None:intergenic 45.0%
GATGAAACAACGCTGTGATG+AGG - chr8_3:57403309-57403328 None:intergenic 45.0%
AGAAATGGAAACGACGGAGA+TGG + chr8_3:57403377-57403396 Msa1297310:CDS 45.0%
ATCAGCGACGAAGATGAAGA+CGG + chr8_3:57403417-57403436 Msa1297310:CDS 45.0%
TCTAACACCTCGACAAGTTG+AGG + chr8_3:57403661-57403680 Msa1297310:CDS 45.0%
!! TGTTTAGGTACCTGGCTCTA+CGG - chr8_3:57403700-57403719 None:intergenic 45.0%
!! ATTGCGGTTGCAGTTTTTGG+TGG + chr8_3:57403784-57403803 Msa1297310:intron 45.0%
! GCAGTACACAACGGTTTTTG+AGG - chr8_3:57403853-57403872 None:intergenic 45.0%
GAATAGGAGGCTACAAAAGG+AGG + chr8_3:57404185-57404204 Msa1297310:CDS 45.0%
GCTGGCATAGGCATATACAA+GGG - chr8_3:57404243-57404262 None:intergenic 45.0%
TGCTGGCATAGGCATATACA+AGG - chr8_3:57404244-57404263 None:intergenic 45.0%
TGTCCTTCATGTGAGAGACT+AGG + chr8_3:57404279-57404298 Msa1297310:CDS 45.0%
GTGAAGGGGTTGTAAAAGTG+AGG - chr8_3:57404354-57404373 None:intergenic 45.0%
! GGATGGTGGTGTGTCTTGTT+TGG - chr8_3:57403154-57403173 None:intergenic 50.0%
AAGCTTCTTCCTAGCTGCAG+TGG - chr8_3:57403445-57403464 None:intergenic 50.0%
AACCAGACCTCAACTTGTCG+AGG - chr8_3:57403671-57403690 None:intergenic 50.0%
CACATAGTAAGGGTAGCTGC+TGG - chr8_3:57404261-57404280 None:intergenic 50.0%
CCACCTAGTCTCTCACATGA+AGG - chr8_3:57404285-57404304 None:intergenic 50.0%
CCTTCATGTGAGAGACTAGG+TGG + chr8_3:57404282-57404301 Msa1297310:CDS 50.0%
TCATGTGAGAGACTAGGTGG+TGG + chr8_3:57404285-57404304 Msa1297310:CDS 50.0%
!! CTAGGTGGTGGTGGTGTTAA+TGG + chr8_3:57404297-57404316 Msa1297310:CDS 50.0%
! GGATGGTGGTGTGTCTTGTT+TGG - chr8_3:57403154-57403173 None:intergenic 50.0%
AAGCTTCTTCCTAGCTGCAG+TGG - chr8_3:57403445-57403464 None:intergenic 50.0%
AACCAGACCTCAACTTGTCG+AGG - chr8_3:57403671-57403690 None:intergenic 50.0%
CACATAGTAAGGGTAGCTGC+TGG - chr8_3:57404261-57404280 None:intergenic 50.0%
CCACCTAGTCTCTCACATGA+AGG - chr8_3:57404285-57404304 None:intergenic 50.0%
CCTTCATGTGAGAGACTAGG+TGG + chr8_3:57404282-57404301 Msa1297310:CDS 50.0%
TCATGTGAGAGACTAGGTGG+TGG + chr8_3:57404285-57404304 Msa1297310:CDS 50.0%
!! CTAGGTGGTGGTGGTGTTAA+TGG + chr8_3:57404297-57404316 Msa1297310:CDS 50.0%
! CACCTCGACAAGTTGAGGTC+TGG + chr8_3:57403666-57403685 Msa1297310:CDS 55.0%
GTAAGGGTAGCTGCTGGCAT+AGG - chr8_3:57404255-57404274 None:intergenic 55.0%
! TGTGAGAGACTAGGTGGTGG+TGG + chr8_3:57404288-57404307 Msa1297310:CDS 55.0%
!! GGTGGTGGTGGTGTTAATGG+TGG + chr8_3:57404300-57404319 Msa1297310:CDS 55.0%
! CACCTCGACAAGTTGAGGTC+TGG + chr8_3:57403666-57403685 Msa1297310:CDS 55.0%
GTAAGGGTAGCTGCTGGCAT+AGG - chr8_3:57404255-57404274 None:intergenic 55.0%
! TGTGAGAGACTAGGTGGTGG+TGG + chr8_3:57404288-57404307 Msa1297310:CDS 55.0%
!! GGTGGTGGTGGTGTTAATGG+TGG + chr8_3:57404300-57404319 Msa1297310:CDS 55.0%
!! AAGACGGTGCCACTGCAGCT+AGG + chr8_3:57403433-57403452 Msa1297310:CDS 60.0%
GGTTCCAGAACCGTAGAGCC+AGG + chr8_3:57403687-57403706 Msa1297310:CDS 60.0%
!! GGTACCTGGCTCTACGGTTC+TGG - chr8_3:57403694-57403713 None:intergenic 60.0%
!! AAGACGGTGCCACTGCAGCT+AGG + chr8_3:57403433-57403452 Msa1297310:CDS 60.0%
GGTTCCAGAACCGTAGAGCC+AGG + chr8_3:57403687-57403706 Msa1297310:CDS 60.0%
!! GGTACCTGGCTCTACGGTTC+TGG - chr8_3:57403694-57403713 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 57402986 57404678 57402986 ID=Msa1297310;Name=Msa1297310
chr8_3 mRNA 57402986 57404678 57402986 ID=Msa1297310-mRNA-1;Parent=Msa1297310;Name=Msa1297310-mRNA-1;_AED=0.07;_eAED=0.07;_QI=92|1|1|1|1|1|3|283|270
chr8_3 exon 57402986 57403530 57402986 ID=Msa1297310-mRNA-1:exon:16483;Parent=Msa1297310-mRNA-1
chr8_3 exon 57403629 57403708 57403629 ID=Msa1297310-mRNA-1:exon:16484;Parent=Msa1297310-mRNA-1
chr8_3 exon 57404116 57404678 57404116 ID=Msa1297310-mRNA-1:exon:16485;Parent=Msa1297310-mRNA-1
chr8_3 five_prime_UTR 57402986 57403077 57402986 ID=Msa1297310-mRNA-1:five_prime_utr;Parent=Msa1297310-mRNA-1
chr8_3 CDS 57403078 57403530 57403078 ID=Msa1297310-mRNA-1:cds;Parent=Msa1297310-mRNA-1
chr8_3 CDS 57403629 57403708 57403629 ID=Msa1297310-mRNA-1:cds;Parent=Msa1297310-mRNA-1
chr8_3 CDS 57404116 57404395 57404116 ID=Msa1297310-mRNA-1:cds;Parent=Msa1297310-mRNA-1
chr8_3 three_prime_UTR 57404396 57404678 57404396 ID=Msa1297310-mRNA-1:three_prime_utr;Parent=Msa1297310-mRNA-1
Gene Sequence

>Msa1297310

ATGGGTCTTAATAATCAAGATGCTAGTAACAACTCAGGCCTTCAACTTATTCTAGGCTTAGCTCTTACTCTTACCAAACAAGACACACCACCATCCAACAACAACGTTACAAAGCCTTATTCCTCAAGTAATCATAACAACTATGAAGCTGAACCATCTTTAACGTTGGGTTTATCCACCAAGAGTTACTATGAAGAACCTCTTGATTTTTCTACACAAACAAACTCACCTCATCACAGCGTTGTTTCATCTTTCTCTAGTGGGAGGGTGAAGAGAGAAAGAGATGTTAGCAGTGAATTAGAAATGGAAACGACGGAGATGGAGAGAGTTTCTTCGAGAATCAGCGACGAAGATGAAGACGGTGCCACTGCAGCTAGGAAGAAGCTTAGACTTACCAAAGATCAATCTGCTATGCTTGAAGAAAGTTTCAAAGAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTAGCCAGAGAGTTAAATCTAACACCTCGACAAGTTGAGGTCTGGTTCCAGAACCGTAGAGCCAGAACAAAGCTGAAGCAAACAGAAGTGGATTGTGAGTTCCTAAAGAAATGTTGTGAAACATTAACAGAAGAGAATAGGAGGCTACAAAAGGAGGTGCAAGAATTGAAGGCACTAAAACTAGCACAACCCTTGTATATGCCTATGCCAGCAGCTACCCTTACTATGTGTCCTTCATGTGAGAGACTAGGTGGTGGTGGTGTTAATGGTGGTTCTTCCAATAAGAGCAATTTCTCTAAGCCTCACTTTTACAACCCCTTCACAAATTCTTCAGCAGCATGTTGA

Protein sequence

>Msa1297310

MGLNNQDASNNSGLQLILGLALTLTKQDTPPSNNNVTKPYSSSNHNNYEAEPSLTLGLSTKSYYEEPLDFSTQTNSPHHSVVSSFSSGRVKRERDVSSELEMETTEMERVSSRISDEDEDGATAARKKLRLTKDQSAMLEESFKEHSTLNPKQKQALARELNLTPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTEENRRLQKEVQELKALKLAQPLYMPMPAATLTMCPSCERLGGGGVNGGSSNKSNFSKPHFYNPFTNSSAAC*