Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829830 | XP_003593344.3 | 95.184 | 353 | 17 | 0 | 1 | 353 | 1 | 353 | 0.0 | 697 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829830 | sp|Q9T072|BH025_ARATH | 56.757 | 185 | 72 | 4 | 173 | 353 | 148 | 328 | 1.00e-58 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829830 | A0A396J145 | 95.184 | 353 | 17 | 0 | 1 | 353 | 1 | 353 | 0.0 | 697 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0829830 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007990 | Msa0829830 | 0.802779 | 4.770551e-49 | -8.615850e-47 |
| Msa0042550 | Msa0829830 | 0.832536 | 8.936657e-56 | -8.615850e-47 |
| Msa0092410 | Msa0829830 | 0.819853 | 9.339503e-53 | -8.615850e-47 |
| Msa0622170 | Msa0829830 | -0.803227 | 3.854609e-49 | -8.615850e-47 |
| Msa0667740 | Msa0829830 | 0.835025 | 2.133837e-56 | -8.615850e-47 |
| Msa0689780 | Msa0829830 | 0.814045 | 1.881162e-51 | -8.615850e-47 |
| Msa0708310 | Msa0829830 | 0.832250 | 1.052136e-55 | -8.615850e-47 |
| Msa0763920 | Msa0829830 | 0.803178 | 3.946579e-49 | -8.615850e-47 |
| Msa0817460 | Msa0829830 | 0.816793 | 4.605053e-52 | -8.615850e-47 |
| Msa0828240 | Msa0829830 | 0.810531 | 1.100682e-50 | -8.615850e-47 |
| Msa0829830 | Msa0831850 | 0.807548 | 4.790984e-50 | -8.615850e-47 |
| Msa0829830 | Msa0844110 | 0.810026 | 1.414607e-50 | -8.615850e-47 |
| Msa0829830 | Msa0868160 | 0.800949 | 1.133903e-48 | -8.615850e-47 |
| Msa0829830 | Msa0894710 | 0.802434 | 5.621665e-49 | -8.615850e-47 |
| Msa0829830 | Msa0902830 | 0.805597 | 1.236169e-49 | -8.615850e-47 |
| Msa0829830 | Msa0935770 | 0.809429 | 1.900423e-50 | -8.615850e-47 |
| Msa0829830 | Msa0936390 | 0.821427 | 4.061509e-53 | -8.615850e-47 |
| Msa0829830 | Msa0939110 | 0.802003 | 6.894697e-49 | -8.615850e-47 |
| Msa0829830 | Msa0960390 | 0.822879 | 1.870172e-53 | -8.615850e-47 |
| Msa0829830 | Msa0972810 | 0.812484 | 4.142087e-51 | -8.615850e-47 |
| Msa0829830 | Msa0994910 | 0.820598 | 6.301517e-53 | -8.615850e-47 |
| Msa0829830 | Msa1022820 | 0.812146 | 4.909416e-51 | -8.615850e-47 |
| Msa0829830 | Msa1039710 | -0.808111 | 3.635444e-50 | -8.615850e-47 |
| Msa0829830 | Msa1080960 | 0.809486 | 1.847363e-50 | -8.615850e-47 |
| Msa0829830 | Msa1107190 | 0.803539 | 3.321856e-49 | -8.615850e-47 |
| Msa0829830 | Msa1182250 | 0.801007 | 1.103330e-48 | -8.615850e-47 |
| Msa0829830 | Msa1185110 | 0.800832 | 1.197768e-48 | -8.615850e-47 |
| Msa0829830 | Msa1270730 | 0.804007 | 2.655558e-49 | -8.615850e-47 |
| Msa0829830 | Msa1291830 | 0.805451 | 1.326422e-49 | -8.615850e-47 |
| Msa0829830 | Msa1297310 | 0.810855 | 9.366029e-51 | -8.615850e-47 |
| Msa0829830 | Msa1304890 | -0.805373 | 1.377352e-49 | -8.615850e-47 |
| Msa0829830 | Msa1332050 | 0.812368 | 4.390743e-51 | -8.615850e-47 |
| Msa0829830 | Msa1335230 | 0.814381 | 1.586286e-51 | -8.615850e-47 |
| Msa0829830 | Msa1338400 | 0.820380 | 7.072527e-53 | -8.615850e-47 |
| Msa0829830 | Msa1343250 | 0.892268 | 1.856292e-74 | -8.615850e-47 |
| Msa0829830 | Msa1352540 | -0.805938 | 1.048135e-49 | -8.615850e-47 |
| Msa0829830 | Msa1353890 | 0.831256 | 1.850824e-55 | -8.615850e-47 |
| Msa0829830 | Msa1372150 | 0.835798 | 1.360396e-56 | -8.615850e-47 |
| Msa0829830 | Msa1378040 | 0.818737 | 1.676828e-52 | -8.615850e-47 |
| Msa0829830 | Msa1385020 | 0.808871 | 2.503438e-50 | -8.615850e-47 |
| Msa0829830 | Msa1408340 | 0.807958 | 3.918710e-50 | -8.615850e-47 |
| Msa0829830 | Msa1420270 | 0.823799 | 1.140385e-53 | -8.615850e-47 |
| Msa0829830 | Msa1423820 | 0.805490 | 1.301549e-49 | -8.615850e-47 |
| Msa0829830 | Msa1424630 | 0.841268 | 5.265842e-58 | -8.615850e-47 |
| Msa0829830 | Msa1430550 | 0.829716 | 4.405264e-55 | -8.615850e-47 |
| Msa0829830 | Msa1446180 | -0.805713 | 1.168829e-49 | -8.615850e-47 |
| Msa0829830 | Msa1457160 | 0.824022 | 1.010975e-53 | -8.615850e-47 |
| Msa0829830 | Msa1458100 | -0.804499 | 2.097437e-49 | -8.615850e-47 |
| Msa0829830 | Msa1462360 | 0.829806 | 4.188882e-55 | -8.615850e-47 |
| Msa0142280 | Msa0829830 | 0.804853 | 1.769219e-49 | -8.615850e-47 |
| Msa0149300 | Msa0829830 | 0.802055 | 6.725668e-49 | -8.615850e-47 |
| Msa0152560 | Msa0829830 | 0.814292 | 1.659851e-51 | -8.615850e-47 |
| Msa0178510 | Msa0829830 | 0.827844 | 1.249576e-54 | -8.615850e-47 |
| Msa0187830 | Msa0829830 | 0.849651 | 2.819265e-60 | -8.615850e-47 |
| Msa0189610 | Msa0829830 | 0.804549 | 2.048189e-49 | -8.615850e-47 |
| Msa0190530 | Msa0829830 | 0.903734 | 2.552637e-79 | -8.615850e-47 |
| Msa0201570 | Msa0829830 | 0.835298 | 1.819987e-56 | -8.615850e-47 |
| Msa0222980 | Msa0829830 | 0.802825 | 4.668290e-49 | -8.615850e-47 |
| Msa0225220 | Msa0829830 | 0.813661 | 2.286147e-51 | -8.615850e-47 |
| Msa0227340 | Msa0829830 | 0.811015 | 8.647182e-51 | -8.615850e-47 |
| Msa0229590 | Msa0829830 | 0.801579 | 8.423883e-49 | -8.615850e-47 |
| Msa0232720 | Msa0829830 | 0.935248 | 1.143269e-96 | -8.615850e-47 |
| Msa0389910 | Msa0829830 | 0.813056 | 3.105492e-51 | -8.615850e-47 |
| Msa0393620 | Msa0829830 | 0.800990 | 1.111890e-48 | -8.615850e-47 |
| Msa0394140 | Msa0829830 | 0.808786 | 2.609651e-50 | -8.615850e-47 |
| Msa0394470 | Msa0829830 | 0.803171 | 3.958363e-49 | -8.615850e-47 |
| Msa0410580 | Msa0829830 | 0.812682 | 3.749869e-51 | -8.615850e-47 |
| Msa0414140 | Msa0829830 | 0.802955 | 4.387918e-49 | -8.615850e-47 |
| Msa0243480 | Msa0829830 | 0.803632 | 3.177321e-49 | -8.615850e-47 |
| Msa0264830 | Msa0829830 | 0.822569 | 2.208637e-53 | -8.615850e-47 |
| Msa0269560 | Msa0829830 | 0.816688 | 4.859756e-52 | -8.615850e-47 |
| Msa0282720 | Msa0829830 | 0.809520 | 1.817330e-50 | -8.615850e-47 |
| Msa0302870 | Msa0829830 | 0.813035 | 3.137927e-51 | -8.615850e-47 |
| Msa0308460 | Msa0829830 | 0.834733 | 2.526579e-56 | -8.615850e-47 |
| Msa0311610 | Msa0829830 | 0.819375 | 1.200228e-52 | -8.615850e-47 |
| Msa0319290 | Msa0829830 | 0.800639 | 1.311700e-48 | -8.615850e-47 |
| Msa0321080 | Msa0829830 | 0.826157 | 3.163774e-54 | -8.615850e-47 |
| Msa0322680 | Msa0829830 | 0.819599 | 1.067386e-52 | -8.615850e-47 |
| Msa0340340 | Msa0829830 | 0.826353 | 2.842617e-54 | -8.615850e-47 |
| Msa0349700 | Msa0829830 | 0.817769 | 2.777653e-52 | -8.615850e-47 |
| Msa0485490 | Msa0829830 | 0.813251 | 2.813660e-51 | -8.615850e-47 |
| Msa0506860 | Msa0829830 | 0.800873 | 1.174816e-48 | -8.615850e-47 |
| Msa0516700 | Msa0829830 | 0.808570 | 2.902691e-50 | -8.615850e-47 |
| Msa0526070 | Msa0829830 | -0.809199 | 2.129508e-50 | -8.615850e-47 |
| Msa0559500 | Msa0829830 | 0.801528 | 8.628704e-49 | -8.615850e-47 |
| Msa0574600 | Msa0829830 | 0.814051 | 1.875366e-51 | -8.615850e-47 |
| Msa0579660 | Msa0829830 | 0.809301 | 2.025119e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829830 | MtrunA17_Chr2g0280161 | 95.184 | 353 | 17 | 0 | 1 | 353 | 1 | 353 | 0.0 | 697 |
| Msa0829830 | MtrunA17_Chr4g0049331 | 55.301 | 349 | 112 | 10 | 7 | 353 | 4 | 310 | 1.34e-114 | 335 |
| Msa0829830 | MtrunA17_Chr4g0054561 | 40.230 | 348 | 172 | 14 | 5 | 345 | 2 | 320 | 3.64e-59 | 194 |
| Msa0829830 | MtrunA17_Chr4g0054551 | 40.230 | 348 | 172 | 14 | 5 | 345 | 2 | 320 | 2.64e-58 | 191 |
| Msa0829830 | MtrunA17_Chr5g0400661 | 44.358 | 257 | 115 | 6 | 106 | 346 | 86 | 330 | 2.04e-57 | 189 |
| Msa0829830 | MtrunA17_Chr5g0400621 | 52.632 | 190 | 87 | 2 | 166 | 353 | 144 | 332 | 5.06e-55 | 183 |
| Msa0829830 | MtrunA17_Chr4g0054581 | 45.089 | 224 | 106 | 6 | 138 | 353 | 163 | 377 | 2.66e-49 | 169 |
| Msa0829830 | MtrunA17_Chr5g0400671 | 34.104 | 346 | 200 | 10 | 5 | 348 | 2 | 321 | 5.12e-49 | 167 |
| Msa0829830 | MtrunA17_Chr6g0468491 | 46.667 | 195 | 99 | 4 | 161 | 353 | 121 | 312 | 2.66e-48 | 165 |
| Msa0829830 | MtrunA17_Chr8g0336681 | 42.081 | 221 | 116 | 4 | 134 | 346 | 115 | 331 | 2.69e-48 | 166 |
| Msa0829830 | MtrunA17_Chr4g0054571 | 54.749 | 179 | 69 | 4 | 177 | 346 | 150 | 325 | 3.89e-48 | 165 |
| Msa0829830 | MtrunA17_Chr2g0333621 | 50.847 | 177 | 81 | 2 | 173 | 346 | 134 | 307 | 2.17e-46 | 160 |
| Msa0829830 | MtrunA17_Chr2g0307131 | 43.842 | 203 | 107 | 3 | 151 | 353 | 159 | 354 | 4.35e-46 | 160 |
| Msa0829830 | MtrunA17_Chr2g0307141 | 46.524 | 187 | 83 | 4 | 175 | 353 | 181 | 358 | 9.69e-45 | 157 |
| Msa0829830 | MtrunA17_Chr7g0225901 | 45.304 | 181 | 95 | 2 | 151 | 331 | 65 | 241 | 3.45e-43 | 150 |
| Msa0829830 | MtrunA17_Chr4g0033391 | 43.548 | 186 | 99 | 2 | 168 | 353 | 140 | 319 | 4.99e-43 | 152 |
| Msa0829830 | MtrunA17_Chr4g0054621 | 39.904 | 208 | 107 | 3 | 156 | 353 | 141 | 340 | 1.30e-41 | 148 |
| Msa0829830 | MtrunA17_Chr4g0002801 | 45.161 | 186 | 93 | 3 | 168 | 346 | 143 | 326 | 1.38e-39 | 142 |
| Msa0829830 | MtrunA17_Chr4g0002781 | 46.067 | 178 | 90 | 2 | 173 | 346 | 170 | 345 | 1.69e-39 | 143 |
| Msa0829830 | MtrunA17_Chr2g0333641 | 46.927 | 179 | 92 | 2 | 173 | 351 | 133 | 308 | 1.70e-39 | 142 |
| Msa0829830 | MtrunA17_Chr4g0033291 | 41.627 | 209 | 111 | 3 | 151 | 352 | 122 | 326 | 5.23e-39 | 141 |
| Msa0829830 | MtrunA17_Chr2g0333611 | 42.697 | 178 | 89 | 5 | 174 | 346 | 42 | 211 | 8.72e-39 | 137 |
| Msa0829830 | MtrunA17_Chr5g0400641 | 46.452 | 155 | 82 | 1 | 180 | 334 | 1 | 154 | 1.51e-38 | 135 |
| Msa0829830 | MtrunA17_Chr4g0033281 | 40.952 | 210 | 112 | 3 | 151 | 353 | 120 | 324 | 1.29e-37 | 137 |
| Msa0829830 | MtrunA17_Chr2g0333541 | 43.094 | 181 | 100 | 2 | 168 | 346 | 85 | 264 | 6.97e-36 | 131 |
| Msa0829830 | MtrunA17_Chr6g0468461 | 41.765 | 170 | 84 | 2 | 161 | 330 | 157 | 311 | 8.73e-33 | 125 |
| Msa0829830 | MtrunA17_Chr7g0249811 | 41.860 | 172 | 90 | 1 | 175 | 346 | 163 | 324 | 4.61e-31 | 120 |
| Msa0829830 | MtrunA17_Chr7g0233441 | 38.816 | 152 | 82 | 2 | 200 | 351 | 57 | 197 | 1.11e-25 | 102 |
| Msa0829830 | MtrunA17_Chr4g0002831 | 35.260 | 173 | 99 | 4 | 180 | 351 | 45 | 205 | 3.30e-24 | 98.6 |
| Msa0829830 | MtrunA17_Chr4g0002851 | 37.500 | 152 | 76 | 2 | 200 | 351 | 65 | 197 | 1.89e-23 | 96.3 |
| Msa0829830 | MtrunA17_Chr1g0185621 | 34.395 | 157 | 93 | 3 | 177 | 324 | 475 | 630 | 5.60e-20 | 91.3 |
| Msa0829830 | MtrunA17_Chr7g0275821 | 31.618 | 136 | 84 | 2 | 177 | 312 | 252 | 378 | 2.61e-16 | 79.7 |
| Msa0829830 | MtrunA17_Chr8g0366751 | 33.143 | 175 | 106 | 3 | 150 | 313 | 434 | 608 | 1.29e-15 | 78.2 |
| Msa0829830 | MtrunA17_Chr5g0411341 | 31.333 | 150 | 87 | 3 | 177 | 313 | 493 | 639 | 4.37e-15 | 76.6 |
| Msa0829830 | MtrunA17_Chr8g0346161 | 32.168 | 143 | 85 | 3 | 177 | 313 | 291 | 427 | 8.60e-15 | 75.1 |
| Msa0829830 | MtrunA17_Chr3g0131691 | 29.032 | 155 | 101 | 2 | 179 | 324 | 300 | 454 | 9.68e-15 | 75.1 |
| Msa0829830 | MtrunA17_Chr7g0260841 | 54.386 | 57 | 26 | 0 | 177 | 233 | 355 | 411 | 6.72e-14 | 72.8 |
| Msa0829830 | MtrunA17_Chr8g0346151 | 27.711 | 166 | 99 | 3 | 177 | 330 | 279 | 435 | 1.38e-13 | 71.6 |
| Msa0829830 | MtrunA17_Chr7g0252041 | 28.302 | 159 | 99 | 3 | 179 | 324 | 288 | 444 | 2.43e-13 | 70.9 |
| Msa0829830 | MtrunA17_Chr8g0365711 | 25.843 | 178 | 110 | 5 | 166 | 327 | 227 | 398 | 1.09e-11 | 65.5 |
| Msa0829830 | MtrunA17_Chr8g0386921 | 25.962 | 208 | 121 | 5 | 174 | 352 | 403 | 606 | 4.82e-11 | 63.9 |
| Msa0829830 | MtrunA17_Chr1g0211081 | 38.710 | 93 | 53 | 2 | 168 | 257 | 309 | 400 | 5.08e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829830 | AT4G37850.2 | 56.757 | 185 | 72 | 4 | 173 | 353 | 148 | 328 | 1.02e-59 | 196 |
| Msa0829830 | AT4G37850.1 | 56.757 | 185 | 72 | 4 | 173 | 353 | 148 | 328 | 1.02e-59 | 196 |
| Msa0829830 | AT2G22760.1 | 49.153 | 177 | 87 | 3 | 175 | 348 | 117 | 293 | 1.13e-48 | 166 |
| Msa0829830 | AT2G22770.1 | 46.809 | 188 | 86 | 2 | 177 | 350 | 132 | 319 | 7.28e-45 | 156 |
| Msa0829830 | AT2G22750.2 | 50.811 | 185 | 84 | 3 | 173 | 352 | 122 | 304 | 3.47e-43 | 152 |
| Msa0829830 | AT2G22750.5 | 50.811 | 185 | 84 | 3 | 173 | 352 | 146 | 328 | 7.33e-43 | 151 |
| Msa0829830 | AT2G22750.3 | 50.811 | 185 | 84 | 3 | 173 | 352 | 150 | 332 | 7.56e-43 | 152 |
| Msa0829830 | AT2G22750.1 | 50.811 | 185 | 83 | 4 | 173 | 352 | 122 | 303 | 7.29e-42 | 148 |
| Msa0829830 | AT2G22760.2 | 47.468 | 158 | 81 | 2 | 175 | 330 | 117 | 274 | 1.33e-41 | 147 |
| Msa0829830 | AT2G22750.4 | 50.811 | 185 | 83 | 4 | 173 | 352 | 150 | 331 | 1.67e-41 | 148 |
| Msa0829830 | AT1G32640.1 | 36.025 | 161 | 87 | 4 | 165 | 313 | 432 | 588 | 1.20e-18 | 87.8 |
| Msa0829830 | AT5G46760.1 | 34.783 | 161 | 101 | 2 | 177 | 334 | 415 | 574 | 3.95e-17 | 83.2 |
| Msa0829830 | AT2G46510.1 | 59.649 | 57 | 23 | 0 | 177 | 233 | 395 | 451 | 1.22e-16 | 81.6 |
| Msa0829830 | AT4G16430.1 | 37.143 | 140 | 70 | 5 | 118 | 241 | 247 | 384 | 3.34e-16 | 80.1 |
| Msa0829830 | AT1G01260.1 | 52.174 | 69 | 32 | 1 | 168 | 235 | 423 | 491 | 8.74e-16 | 79.0 |
| Msa0829830 | AT1G01260.2 | 52.174 | 69 | 32 | 1 | 168 | 235 | 423 | 491 | 8.74e-16 | 79.0 |
| Msa0829830 | AT1G01260.3 | 52.174 | 69 | 32 | 1 | 168 | 235 | 423 | 491 | 8.74e-16 | 79.0 |
| Msa0829830 | AT4G17880.1 | 31.013 | 158 | 107 | 2 | 177 | 334 | 416 | 571 | 1.38e-15 | 78.2 |
| Msa0829830 | AT1G12860.2 | 30.921 | 152 | 100 | 3 | 178 | 324 | 268 | 419 | 2.09e-14 | 74.3 |
| Msa0829830 | AT1G12860.1 | 31.126 | 151 | 99 | 3 | 179 | 324 | 269 | 419 | 2.38e-14 | 74.3 |
| Msa0829830 | AT3G26744.6 | 30.128 | 156 | 100 | 3 | 178 | 324 | 308 | 463 | 2.72e-13 | 71.2 |
| Msa0829830 | AT3G26744.1 | 30.128 | 156 | 100 | 3 | 178 | 324 | 308 | 463 | 3.08e-13 | 70.9 |
| Msa0829830 | AT3G26744.4 | 30.128 | 156 | 100 | 3 | 178 | 324 | 308 | 463 | 3.08e-13 | 70.9 |
| Msa0829830 | AT3G26744.2 | 30.128 | 156 | 100 | 3 | 178 | 324 | 308 | 463 | 3.08e-13 | 70.9 |
| Msa0829830 | AT5G57150.3 | 30.000 | 170 | 97 | 5 | 173 | 327 | 51 | 213 | 1.04e-12 | 67.0 |
| Msa0829830 | AT5G57150.2 | 30.000 | 170 | 97 | 5 | 173 | 327 | 51 | 213 | 1.23e-12 | 67.0 |
| Msa0829830 | AT5G57150.5 | 30.000 | 170 | 97 | 5 | 173 | 327 | 50 | 212 | 1.33e-12 | 67.0 |
| Msa0829830 | AT4G09820.1 | 31.343 | 134 | 65 | 3 | 178 | 308 | 364 | 473 | 1.48e-12 | 68.9 |
| Msa0829830 | AT5G57150.4 | 30.000 | 170 | 97 | 5 | 173 | 327 | 51 | 213 | 1.70e-12 | 67.4 |
| Msa0829830 | AT2G16910.1 | 28.049 | 164 | 89 | 4 | 179 | 317 | 316 | 475 | 2.07e-12 | 68.6 |
| Msa0829830 | AT5G57150.1 | 30.000 | 170 | 97 | 5 | 173 | 327 | 50 | 212 | 2.23e-12 | 66.6 |
| Msa0829830 | AT5G41315.3 | 28.824 | 170 | 99 | 3 | 160 | 307 | 429 | 598 | 2.30e-12 | 68.6 |
| Msa0829830 | AT5G41315.1 | 28.824 | 170 | 99 | 3 | 160 | 307 | 424 | 593 | 2.46e-12 | 68.6 |
| Msa0829830 | AT5G41315.2 | 28.824 | 170 | 99 | 3 | 160 | 307 | 432 | 601 | 2.50e-12 | 68.6 |
| Msa0829830 | AT3G61950.6 | 30.496 | 141 | 87 | 3 | 177 | 311 | 128 | 263 | 4.77e-12 | 66.2 |
| Msa0829830 | AT4G00870.1 | 46.875 | 64 | 34 | 0 | 178 | 241 | 250 | 313 | 5.93e-12 | 67.0 |
| Msa0829830 | AT3G61950.3 | 30.496 | 141 | 87 | 3 | 177 | 311 | 179 | 314 | 8.88e-12 | 65.9 |
| Msa0829830 | AT3G61950.2 | 30.496 | 141 | 87 | 3 | 177 | 311 | 128 | 263 | 9.61e-12 | 65.5 |
| Msa0829830 | AT3G61950.1 | 30.496 | 141 | 87 | 3 | 177 | 311 | 179 | 314 | 1.80e-11 | 65.1 |
| Msa0829830 | AT1G63650.3 | 27.564 | 156 | 96 | 3 | 169 | 307 | 397 | 552 | 1.91e-11 | 65.9 |
| Msa0829830 | AT1G63650.1 | 27.564 | 156 | 96 | 3 | 169 | 307 | 397 | 552 | 1.91e-11 | 65.9 |
| Msa0829830 | AT1G63650.2 | 27.564 | 156 | 96 | 3 | 169 | 307 | 397 | 552 | 1.91e-11 | 65.9 |
| Msa0829830 | AT4G29930.6 | 27.778 | 180 | 107 | 6 | 178 | 349 | 55 | 219 | 2.06e-11 | 63.5 |
| Msa0829830 | AT4G29930.2 | 28.161 | 174 | 111 | 4 | 178 | 349 | 55 | 216 | 3.19e-11 | 62.8 |
| Msa0829830 | AT4G29930.1 | 25.773 | 194 | 119 | 3 | 178 | 349 | 55 | 245 | 5.56e-11 | 62.8 |
Find 67 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAATCTTGCTTCAATTTC+AGG | 0.082646 | 5_4:-2834703 | None:intergenic |
| AATATATATCTTACCATTTC+AGG | 0.177016 | 5_4:-2832740 | None:intergenic |
| AACTTAACTGCTTCTGCTTT+TGG | 0.208058 | 5_4:+2833060 | Msa0829830:CDS |
| AGCAGAAGCAGTTAAGTTAT+TGG | 0.221213 | 5_4:-2833055 | None:intergenic |
| ATGGACAAAGCTTCTGTTCT+TGG | 0.230457 | 5_4:+2834508 | Msa0829830:CDS |
| AATAGCAGTTCCTTGACTTT+TGG | 0.241912 | 5_4:+2834823 | Msa0829830:CDS |
| TTTCACCGGTCTTTCGTTTC+CGG | 0.252447 | 5_4:-2833157 | None:intergenic |
| GTTGTTGAAGTTTGGATTAT+TGG | 0.283921 | 5_4:-2833109 | None:intergenic |
| ATCACTCAAGGTAACTTGTT+TGG | 0.298879 | 5_4:+2833372 | Msa0829830:CDS |
| TTAGTCCTTGATTCAAATAT+AGG | 0.299898 | 5_4:+2832399 | Msa0829830:five_prime_UTR |
| AGAAGAGTTGTATTATTATA+TGG | 0.309218 | 5_4:-2832466 | None:intergenic |
| ATGATTTCTGCAGGGGATAA+TGG | 0.322117 | 5_4:+2832981 | Msa0829830:intron |
| TTTGATACCTTCTTTAGGTT+TGG | 0.325711 | 5_4:-2833546 | None:intergenic |
| CACGGGTTTGGATGTGATAT+TGG | 0.327233 | 5_4:-2832442 | None:intergenic |
| CATTATTTGATACCTTCTTT+AGG | 0.327577 | 5_4:-2833551 | None:intergenic |
| TCACTCAAGGTAACTTGTTT+GGG | 0.334384 | 5_4:+2833373 | Msa0829830:CDS |
| TTAAAGTGATGGAGAAAGTT+AGG | 0.337641 | 5_4:-2833009 | None:intergenic |
| CTGTTCTTGGAGAAGCTATA+AGG | 0.338206 | 5_4:+2834521 | Msa0829830:CDS |
| TTATTATATGGTCACGGGTT+TGG | 0.338571 | 5_4:-2832454 | None:intergenic |
| TATTGGTATCAATAGAGTTT+AGG | 0.363520 | 5_4:-2833038 | None:intergenic |
| CATAAAATTTAACTTCTTTG+TGG | 0.376553 | 5_4:-2835376 | None:intergenic |
| TATCAGAGGGTTACCTGAAA+TGG | 0.381568 | 5_4:+2832727 | Msa0829830:CDS |
| AATAATCATGTTTGCATGGC+GGG | 0.428743 | 5_4:+2835409 | Msa0829830:three_prime_UTR |
| TTCCAGGATGAGTTCTCATA+TGG | 0.444780 | 5_4:+2832694 | Msa0829830:intron |
| TAAAATTACCTGAGCAATGA+TGG | 0.451657 | 5_4:-2834866 | None:intergenic |
| TTGAATTACACAAATCAGTT+GGG | 0.457187 | 5_4:+2833279 | Msa0829830:CDS |
| TCAAACAATGTAGTCTTATG+AGG | 0.459967 | 5_4:-2834738 | None:intergenic |
| TATAAGGTACTTAAAGCAAA+TGG | 0.467859 | 5_4:+2834537 | Msa0829830:CDS |
| GAGCAATGATGGTTATATCA+AGG | 0.480152 | 5_4:-2834855 | None:intergenic |
| TTAGGTGATTATTAAAGTGA+TGG | 0.488258 | 5_4:-2833020 | None:intergenic |
| TTTGAATTACACAAATCAGT+TGG | 0.490344 | 5_4:+2833278 | Msa0829830:CDS |
| AGAAGCCTATATTTGAATCA+AGG | 0.494417 | 5_4:-2832404 | None:intergenic |
| TTATTTCTTAACTGTTTCAC+CGG | 0.499185 | 5_4:-2833171 | None:intergenic |
| GTTGTATTATTATATGGTCA+CGG | 0.499650 | 5_4:-2832460 | None:intergenic |
| AACAGTTAAGAAATAACAGC+TGG | 0.500916 | 5_4:+2833178 | Msa0829830:CDS |
| TGATATAACCATCATTGCTC+AGG | 0.502657 | 5_4:+2834858 | Msa0829830:CDS |
| GGACACACCATCTCAGACTT+AGG | 0.503073 | 5_4:-2833312 | None:intergenic |
| AGAGAAAGTGAGTGTTCTTG+AGG | 0.506732 | 5_4:+2834561 | Msa0829830:CDS |
| CTTGAACAGCTTTAAAGACA+TGG | 0.514024 | 5_4:-2833404 | None:intergenic |
| TTGTATTATTATATGGTCAC+GGG | 0.518868 | 5_4:-2832459 | None:intergenic |
| TCATATTGTGTATCTGATGT+TGG | 0.522543 | 5_4:-2833219 | None:intergenic |
| GGTCTTTCGTTTCCGGTAGA+CGG | 0.530949 | 5_4:-2833150 | None:intergenic |
| TGGCAATTTGCAGATGGATG+TGG | 0.531836 | 5_4:+2835255 | Msa0829830:intron |
| TGCATGGAGACTCCGTCTAC+CGG | 0.552215 | 5_4:+2833138 | Msa0829830:CDS |
| TCTTGTTCCAAACCTAAAGA+AGG | 0.556354 | 5_4:+2833539 | Msa0829830:CDS |
| CTACATTGTTTGAAGAGTCA+AGG | 0.557167 | 5_4:+2834748 | Msa0829830:CDS |
| AAGTAATAATCATGTTTGCA+TGG | 0.557909 | 5_4:+2835405 | Msa0829830:three_prime_UTR |
| TGTCTTTAAAGCTGTTCAAG+AGG | 0.569037 | 5_4:+2833407 | Msa0829830:CDS |
| TGTGTAATTCAAATCAGCAA+AGG | 0.572771 | 5_4:-2833268 | None:intergenic |
| GCAAACATGTTGATCACTCA+AGG | 0.574022 | 5_4:+2833360 | Msa0829830:CDS |
| AGCAATGATGGTTATATCAA+GGG | 0.578216 | 5_4:-2834854 | None:intergenic |
| CTTCAACAACAAAACATGCA+TGG | 0.578541 | 5_4:+2833122 | Msa0829830:CDS |
| CAGACAGAGCGATGAATCGT+TGG | 0.578725 | 5_4:-2833515 | None:intergenic |
| TGGAGATTTCATCTATCAGA+GGG | 0.587975 | 5_4:+2832714 | Msa0829830:CDS |
| GAAAGTGAGTGTTCTTGAGG+AGG | 0.588414 | 5_4:+2834564 | Msa0829830:CDS |
| ATTGAAGCCTAAGTCTGAGA+TGG | 0.590244 | 5_4:+2833305 | Msa0829830:CDS |
| ATGGAGATTTCATCTATCAG+AGG | 0.606668 | 5_4:+2832713 | Msa0829830:CDS |
| GGTGAAATTCCCAAAAGTCA+AGG | 0.621239 | 5_4:-2834833 | None:intergenic |
| TAGTGAACAAAACAAAACTC+AGG | 0.634428 | 5_4:+2832518 | Msa0829830:five_prime_UTR |
| TATTGTGTATCTGATGTTGG+AGG | 0.636554 | 5_4:-2833216 | None:intergenic |
| GTCTACCGGAAACGAAAGAC+CGG | 0.653717 | 5_4:+2833152 | Msa0829830:CDS |
| ATTTCTGCAGGGGATAATGG+AGG | 0.671540 | 5_4:+2832984 | Msa0829830:intron |
| TAATAATCATGTTTGCATGG+CGG | 0.685380 | 5_4:+2835408 | Msa0829830:three_prime_UTR |
| ATGATCACATCGTAGCGGAG+AGG | 0.690331 | 5_4:+2833472 | Msa0829830:CDS |
| TGACAGTGAAGGATCTTGTG+AGG | 0.718300 | 5_4:+2835287 | Msa0829830:CDS |
| AGCTCATGATCACATCGTAG+CGG | 0.723921 | 5_4:+2833467 | Msa0829830:CDS |
| TTGAAACAAATAATACACTG+AGG | 0.758144 | 5_4:+2832493 | Msa0829830:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTACTATTAATCATTAAT+CGG | - | chr5_4:2833794-2833813 | None:intergenic | 10.0% |
| !! | TAAAAAACATGTTTAATATT+TGG | - | chr5_4:2834128-2834147 | None:intergenic | 10.0% |
| !!! | TTATTTTTAGTTAATTATCA+GGG | + | chr5_4:2834199-2834218 | Msa0829830:intron | 10.0% |
| !! | TATTGAATAATGTTATATGA+TGG | - | chr5_4:2832591-2832610 | None:intergenic | 15.0% |
| !!! | AAAAGTATATATTTCATCTT+AGG | + | chr5_4:2833603-2833622 | Msa0829830:intron | 15.0% |
| !!! | GTAATATTTCAATTTTGATT+AGG | + | chr5_4:2833667-2833686 | Msa0829830:intron | 15.0% |
| !! | TTTGATTAGGATAAATATTA+AGG | + | chr5_4:2833680-2833699 | Msa0829830:intron | 15.0% |
| !! | TTGATTAGGATAAATATTAA+GGG | + | chr5_4:2833681-2833700 | Msa0829830:intron | 15.0% |
| !! | TTAATATTTGGAAAATTCTA+TGG | - | chr5_4:2834116-2834135 | None:intergenic | 15.0% |
| !!! | GTTATTTTTAGTTAATTATC+AGG | + | chr5_4:2834198-2834217 | Msa0829830:intron | 15.0% |
| !!! | CTTTTTTAATAGTTTATCTT+AGG | - | chr5_4:2834324-2834343 | None:intergenic | 15.0% |
| !! | TTAACATTAGATATACATAT+AGG | + | chr5_4:2834458-2834477 | Msa0829830:intron | 15.0% |
| !!! | TCCTAATTTTATATGAATAT+TGG | + | chr5_4:2835225-2835244 | Msa0829830:intron | 15.0% |
| !! | TCCAATATTCATATAAAATT+AGG | - | chr5_4:2835229-2835248 | None:intergenic | 15.0% |
| !! | AGAAGAGTTGTATTATTATA+TGG | - | chr5_4:2832469-2832488 | None:intergenic | 20.0% |
| !! | AATATATATCTTACCATTTC+AGG | - | chr5_4:2832743-2832762 | None:intergenic | 20.0% |
| !!! | AGTCTAAATTGATTCAATTT+TGG | - | chr5_4:2832789-2832808 | None:intergenic | 20.0% |
| !! | AAATGGTTCAAAAATAAAGT+AGG | - | chr5_4:2832858-2832877 | None:intergenic | 20.0% |
| !! | TTGATTCAAAATATGGTATT+TGG | + | chr5_4:2832886-2832905 | Msa0829830:intron | 20.0% |
| !!! | TATATACTTTTGACAATATG+AGG | - | chr5_4:2833594-2833613 | None:intergenic | 20.0% |
| !! | AATTGTGTATCAAGTATTAT+TGG | + | chr5_4:2834176-2834195 | Msa0829830:intron | 20.0% |
| !! | ATTCATATAAAATTAGGACT+TGG | - | chr5_4:2835223-2835242 | None:intergenic | 20.0% |
| !! | ATATGAATATTGGAATTGTT+TGG | + | chr5_4:2835235-2835254 | Msa0829830:intron | 20.0% |
| !!! | CATAAAATTTAACTTCTTTG+TGG | - | chr5_4:2835379-2835398 | None:intergenic | 20.0% |
| !!! | TTTTTAGTCATATTTTTGCA+TGG | + | chr5_4:2835496-2835515 | Msa0829830:three_prime_UTR | 20.0% |
| ! | TTAGTCCTTGATTCAAATAT+AGG | + | chr5_4:2832399-2832418 | Msa0829830:five_prime_UTR | 25.0% |
| ! | TTGTATTATTATATGGTCAC+GGG | - | chr5_4:2832462-2832481 | None:intergenic | 25.0% |
| ! | GTTGTATTATTATATGGTCA+CGG | - | chr5_4:2832463-2832482 | None:intergenic | 25.0% |
| ! | TTGAAACAAATAATACACTG+AGG | + | chr5_4:2832493-2832512 | Msa0829830:five_prime_UTR | 25.0% |
| !! | TTTTTGTAAACACCTATTCT+TGG | + | chr5_4:2832762-2832781 | Msa0829830:intron | 25.0% |
| ! | TTGAATCAACATGTGTTAAA+TGG | - | chr5_4:2832875-2832894 | None:intergenic | 25.0% |
| !!! | ACACATGTTGATTCAAAATA+TGG | + | chr5_4:2832879-2832898 | Msa0829830:intron | 25.0% |
| !! | TAATGTTTTATGATTTCTGC+AGG | + | chr5_4:2832972-2832991 | Msa0829830:intron | 25.0% |
| !! | AATGTTTTATGATTTCTGCA+GGG | + | chr5_4:2832973-2832992 | Msa0829830:intron | 25.0% |
| ! | TTAGGTGATTATTAAAGTGA+TGG | - | chr5_4:2833023-2833042 | None:intergenic | 25.0% |
| ! | TATTGGTATCAATAGAGTTT+AGG | - | chr5_4:2833041-2833060 | None:intergenic | 25.0% |
| !! | TTATTTCTTAACTGTTTCAC+CGG | - | chr5_4:2833174-2833193 | None:intergenic | 25.0% |
| ! | TTTGAATTACACAAATCAGT+TGG | + | chr5_4:2833278-2833297 | Msa0829830:CDS | 25.0% |
| ! | TTGAATTACACAAATCAGTT+GGG | + | chr5_4:2833279-2833298 | Msa0829830:CDS | 25.0% |
| ! | CATTATTTGATACCTTCTTT+AGG | - | chr5_4:2833554-2833573 | None:intergenic | 25.0% |
| !! | TACATGTACTATTTTATCGT+TGG | + | chr5_4:2833844-2833863 | Msa0829830:intron | 25.0% |
| ! | TCTTAAGTGTTACACTTTAT+GGG | + | chr5_4:2833909-2833928 | Msa0829830:intron | 25.0% |
| !! | TATAAGGTACTTAAAGCAAA+TGG | + | chr5_4:2834537-2834556 | Msa0829830:CDS | 25.0% |
| !!! | GATTGATTGTTATTTGTTGA+CGG | - | chr5_4:2835108-2835127 | None:intergenic | 25.0% |
| ! | AAGTAATAATCATGTTTGCA+TGG | + | chr5_4:2835405-2835424 | Msa0829830:three_prime_UTR | 25.0% |
| AGAAGCCTATATTTGAATCA+AGG | - | chr5_4:2832407-2832426 | None:intergenic | 30.0% | |
| TAGTGAACAAAACAAAACTC+AGG | + | chr5_4:2832518-2832537 | Msa0829830:five_prime_UTR | 30.0% | |
| TTTCTTCTAATTTCTCTTCC+AGG | + | chr5_4:2832678-2832697 | Msa0829830:intron | 30.0% | |
| !! | TTCAATTTTGGTCCAAGAAT+AGG | - | chr5_4:2832777-2832796 | None:intergenic | 30.0% |
| !!! | ATCTAGCTTCTGAAATTTTG+TGG | + | chr5_4:2832927-2832946 | Msa0829830:intron | 30.0% |
| ! | ATGTTTTATGATTTCTGCAG+GGG | + | chr5_4:2832974-2832993 | Msa0829830:intron | 30.0% |
| ! | TTAAAGTGATGGAGAAAGTT+AGG | - | chr5_4:2833012-2833031 | None:intergenic | 30.0% |
| GTTGTTGAAGTTTGGATTAT+TGG | - | chr5_4:2833112-2833131 | None:intergenic | 30.0% | |
| !!! | CATGTTTTGTTGTTGAAGTT+TGG | - | chr5_4:2833120-2833139 | None:intergenic | 30.0% |
| AACAGTTAAGAAATAACAGC+TGG | + | chr5_4:2833178-2833197 | Msa0829830:CDS | 30.0% | |
| TCATATTGTGTATCTGATGT+TGG | - | chr5_4:2833222-2833241 | None:intergenic | 30.0% | |
| TGTGTAATTCAAATCAGCAA+AGG | - | chr5_4:2833271-2833290 | None:intergenic | 30.0% | |
| !!! | GTACTAGTGTTATCGATTTT+CGG | - | chr5_4:2833336-2833355 | None:intergenic | 30.0% |
| ! | TGAGCTTGAGAGATTTTATT+AGG | - | chr5_4:2833453-2833472 | None:intergenic | 30.0% |
| ! | TTTGATACCTTCTTTAGGTT+TGG | - | chr5_4:2833549-2833568 | None:intergenic | 30.0% |
| ! | ATGTTTTATAGTTCCTCGTA+AGG | - | chr5_4:2833630-2833649 | None:intergenic | 30.0% |
| AACATCGTGATATCTTTGTT+AGG | + | chr5_4:2833645-2833664 | Msa0829830:intron | 30.0% | |
| AAATATTAAGGGAGCTTCTA+TGG | + | chr5_4:2833692-2833711 | Msa0829830:intron | 30.0% | |
| GTCTTAAGTGTTACACTTTA+TGG | + | chr5_4:2833908-2833927 | Msa0829830:intron | 30.0% | |
| CTTAAGTGTTACACTTTATG+GGG | + | chr5_4:2833910-2833929 | Msa0829830:intron | 30.0% | |
| TGTTACACTTAAAACAAGGT+AGG | + | chr5_4:2833933-2833952 | Msa0829830:intron | 30.0% | |
| ! | GATGAATTGATGACACTATA+TGG | + | chr5_4:2833989-2834008 | Msa0829830:intron | 30.0% |
| !!! | AGTCATGAGAATGACTTTTT+TGG | - | chr5_4:2834090-2834109 | None:intergenic | 30.0% |
| !!! | CATGTTTTTTATGACAAACC+AGG | + | chr5_4:2834137-2834156 | Msa0829830:intron | 30.0% |
| ! | TTTTACATACTCATGATTCC+TGG | - | chr5_4:2834158-2834177 | None:intergenic | 30.0% |
| !! | CTAAAGAAATTTTAGCCAAG+AGG | - | chr5_4:2834238-2834257 | None:intergenic | 30.0% |
| ACAAAAAAGGAAGAAAACTG+TGG | + | chr5_4:2834588-2834607 | Msa0829830:CDS | 30.0% | |
| CAAAATCTTGCTTCAATTTC+AGG | - | chr5_4:2834706-2834725 | None:intergenic | 30.0% | |
| !! | TCAAACAATGTAGTCTTATG+AGG | - | chr5_4:2834741-2834760 | None:intergenic | 30.0% |
| AGCAATGATGGTTATATCAA+GGG | - | chr5_4:2834857-2834876 | None:intergenic | 30.0% | |
| TAAAATTACCTGAGCAATGA+TGG | - | chr5_4:2834869-2834888 | None:intergenic | 30.0% | |
| TAATAATCATGTTTGCATGG+CGG | + | chr5_4:2835408-2835427 | Msa0829830:three_prime_UTR | 30.0% | |
| TTATTATATGGTCACGGGTT+TGG | - | chr5_4:2832457-2832476 | None:intergenic | 35.0% | |
| ATGGAGATTTCATCTATCAG+AGG | + | chr5_4:2832713-2832732 | Msa0829830:CDS | 35.0% | |
| TGGAGATTTCATCTATCAGA+GGG | + | chr5_4:2832714-2832733 | Msa0829830:CDS | 35.0% | |
| !! | TCTGAAATTTTGTGGTAGCT+AGG | + | chr5_4:2832935-2832954 | Msa0829830:intron | 35.0% |
| AGCAGAAGCAGTTAAGTTAT+TGG | - | chr5_4:2833058-2833077 | None:intergenic | 35.0% | |
| ! | AACTTAACTGCTTCTGCTTT+TGG | + | chr5_4:2833060-2833079 | Msa0829830:CDS | 35.0% |
| CTTCAACAACAAAACATGCA+TGG | + | chr5_4:2833122-2833141 | Msa0829830:CDS | 35.0% | |
| TATTGTGTATCTGATGTTGG+AGG | - | chr5_4:2833219-2833238 | None:intergenic | 35.0% | |
| !! | ATCACTCAAGGTAACTTGTT+TGG | + | chr5_4:2833372-2833391 | Msa0829830:CDS | 35.0% |
| !! | TCACTCAAGGTAACTTGTTT+GGG | + | chr5_4:2833373-2833392 | Msa0829830:CDS | 35.0% |
| !! | CTTGAACAGCTTTAAAGACA+TGG | - | chr5_4:2833407-2833426 | None:intergenic | 35.0% |
| !! | TGTCTTTAAAGCTGTTCAAG+AGG | + | chr5_4:2833407-2833426 | Msa0829830:CDS | 35.0% |
| TCTTGTTCCAAACCTAAAGA+AGG | + | chr5_4:2833539-2833558 | Msa0829830:CDS | 35.0% | |
| !!! | AGTCAGGAAACTGACTTTTT+TGG | + | chr5_4:2833718-2833737 | Msa0829830:intron | 35.0% |
| TAGTAATGCTTGCAACATCT+TGG | + | chr5_4:2833818-2833837 | Msa0829830:intron | 35.0% | |
| ATGCCACTATACAAATAGTG+AGG | + | chr5_4:2834024-2834043 | Msa0829830:intron | 35.0% | |
| ACACCTCACTATTTGTATAG+TGG | - | chr5_4:2834030-2834049 | None:intergenic | 35.0% | |
| ! | TTCAGTTTTCTGCATACAGA+TGG | + | chr5_4:2834489-2834508 | Msa0829830:intron | 35.0% |
| TTCTTGAGGAGGAACAAAAA+AGG | + | chr5_4:2834575-2834594 | Msa0829830:CDS | 35.0% | |
| CTACATTGTTTGAAGAGTCA+AGG | + | chr5_4:2834748-2834767 | Msa0829830:CDS | 35.0% | |
| ! | AATAGCAGTTCCTTGACTTT+TGG | + | chr5_4:2834823-2834842 | Msa0829830:CDS | 35.0% |
| ! | ATAGCAGTTCCTTGACTTTT+GGG | + | chr5_4:2834824-2834843 | Msa0829830:CDS | 35.0% |
| GAGCAATGATGGTTATATCA+AGG | - | chr5_4:2834858-2834877 | None:intergenic | 35.0% | |
| TGATATAACCATCATTGCTC+AGG | + | chr5_4:2834858-2834877 | Msa0829830:CDS | 35.0% | |
| ATTGTTTGGCAATTTGCAGA+TGG | + | chr5_4:2835249-2835268 | Msa0829830:intron | 35.0% | |
| AATAATCATGTTTGCATGGC+GGG | + | chr5_4:2835409-2835428 | Msa0829830:three_prime_UTR | 35.0% | |
| !!! | CCTTGAGAGCAAACATTTTT+TGG | - | chr5_4:2835458-2835477 | None:intergenic | 35.0% |
| CCAAAAAATGTTTGCTCTCA+AGG | + | chr5_4:2835455-2835474 | Msa0829830:three_prime_UTR | 35.0% | |
| ! | TCAAGGTTCATTTTGCAGAA+GGG | + | chr5_4:2835472-2835491 | Msa0829830:three_prime_UTR | 35.0% |
| TTCCAGGATGAGTTCTCATA+TGG | + | chr5_4:2832694-2832713 | Msa0829830:intron | 40.0% | |
| TATCAGAGGGTTACCTGAAA+TGG | + | chr5_4:2832727-2832746 | Msa0829830:CDS | 40.0% | |
| ATGATTTCTGCAGGGGATAA+TGG | + | chr5_4:2832981-2833000 | Msa0829830:intron | 40.0% | |
| ATTGAAGCCTAAGTCTGAGA+TGG | + | chr5_4:2833305-2833324 | Msa0829830:CDS | 40.0% | |
| GCAAACATGTTGATCACTCA+AGG | + | chr5_4:2833360-2833379 | Msa0829830:CDS | 40.0% | |
| TTTCATCTTAGGTCCTTACG+AGG | + | chr5_4:2833614-2833633 | Msa0829830:intron | 40.0% | |
| ! | GGGGTGTTACACTTAAAACA+AGG | + | chr5_4:2833929-2833948 | Msa0829830:intron | 40.0% |
| ! | CGAGTTAGTTGGTATATCGA+GGG | - | chr5_4:2834264-2834283 | None:intergenic | 40.0% |
| CCTCGATATACCAACTAACT+CGG | + | chr5_4:2834262-2834281 | Msa0829830:intron | 40.0% | |
| ATACCAACTAACTCGGATAG+AGG | + | chr5_4:2834269-2834288 | Msa0829830:intron | 40.0% | |
| TTTCCTCTATCCGAGTTAGT+TGG | - | chr5_4:2834275-2834294 | None:intergenic | 40.0% | |
| CAAATGTCATCTTTCCAAGC+AGG | - | chr5_4:2834407-2834426 | None:intergenic | 40.0% | |
| ATGGACAAAGCTTCTGTTCT+TGG | + | chr5_4:2834508-2834527 | Msa0829830:CDS | 40.0% | |
| CTGTTCTTGGAGAAGCTATA+AGG | + | chr5_4:2834521-2834540 | Msa0829830:CDS | 40.0% | |
| AGAGAAAGTGAGTGTTCTTG+AGG | + | chr5_4:2834561-2834580 | Msa0829830:CDS | 40.0% | |
| GGTGAAATTCCCAAAAGTCA+AGG | - | chr5_4:2834836-2834855 | None:intergenic | 40.0% | |
| ! | GGAATTTTGCATGACAGTGA+AGG | + | chr5_4:2835276-2835295 | Msa0829830:CDS | 40.0% |
| ! | CTCAAGGTTCATTTTGCAGA+AGG | + | chr5_4:2835471-2835490 | Msa0829830:three_prime_UTR | 40.0% |
| CACGGGTTTGGATGTGATAT+TGG | - | chr5_4:2832445-2832464 | None:intergenic | 45.0% | |
| CTCCATATGAGAACTCATCC+TGG | - | chr5_4:2832699-2832718 | None:intergenic | 45.0% | |
| ! | ATTTCTGCAGGGGATAATGG+AGG | + | chr5_4:2832984-2833003 | Msa0829830:intron | 45.0% |
| TTTCACCGGTCTTTCGTTTC+CGG | - | chr5_4:2833160-2833179 | None:intergenic | 45.0% | |
| AGCTCATGATCACATCGTAG+CGG | + | chr5_4:2833467-2833486 | Msa0829830:CDS | 45.0% | |
| GGTTTGAACTCTAGACCTCT+TGG | + | chr5_4:2834220-2834239 | Msa0829830:intron | 45.0% | |
| ! | CCGAGTTAGTTGGTATATCG+AGG | - | chr5_4:2834265-2834284 | None:intergenic | 45.0% |
| ! | GTAAGTTGGGGTCAACTACA+TGG | - | chr5_4:2834373-2834392 | None:intergenic | 45.0% |
| !! | GTAGCTCAGTTGGTAAGTTG+GGG | - | chr5_4:2834385-2834404 | None:intergenic | 45.0% |
| !! | GGTAGCTCAGTTGGTAAGTT+GGG | - | chr5_4:2834386-2834405 | None:intergenic | 45.0% |
| !! | AGGTAGCTCAGTTGGTAAGT+TGG | - | chr5_4:2834387-2834406 | None:intergenic | 45.0% |
| GAAAGTGAGTGTTCTTGAGG+AGG | + | chr5_4:2834564-2834583 | Msa0829830:CDS | 45.0% | |
| TGGCAATTTGCAGATGGATG+TGG | + | chr5_4:2835255-2835274 | Msa0829830:intron | 45.0% | |
| TGACAGTGAAGGATCTTGTG+AGG | + | chr5_4:2835287-2835306 | Msa0829830:CDS | 45.0% | |
| GGTCTTTCGTTTCCGGTAGA+CGG | - | chr5_4:2833153-2833172 | None:intergenic | 50.0% | |
| GTCTACCGGAAACGAAAGAC+CGG | + | chr5_4:2833152-2833171 | Msa0829830:CDS | 50.0% | |
| GGACACACCATCTCAGACTT+AGG | - | chr5_4:2833315-2833334 | None:intergenic | 50.0% | |
| ! | ATGATCACATCGTAGCGGAG+AGG | + | chr5_4:2833472-2833491 | Msa0829830:CDS | 50.0% |
| CAGACAGAGCGATGAATCGT+TGG | - | chr5_4:2833518-2833537 | None:intergenic | 50.0% | |
| TACCAACTGAGCTACCTGCT+TGG | + | chr5_4:2834390-2834409 | Msa0829830:intron | 50.0% | |
| TTCCAAGCAGGTAGCTCAGT+TGG | - | chr5_4:2834395-2834414 | None:intergenic | 50.0% | |
| TGCATGGAGACTCCGTCTAC+CGG | + | chr5_4:2833138-2833157 | Msa0829830:CDS | 55.0% | |
| GGAGCTTCTATGGTGCAGTC+AGG | + | chr5_4:2833702-2833721 | Msa0829830:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 2832397 | 2835549 | 2832397 | ID=Msa0829830;Name=Msa0829830 |
| chr5_4 | mRNA | 2832397 | 2835549 | 2832397 | ID=Msa0829830-mRNA-1;Parent=Msa0829830;Name=Msa0829830-mRNA-1;_AED=0.04;_eAED=0.04;_QI=179|1|0.8|1|0.75|0.8|5|207|353 |
| chr5_4 | exon | 2832397 | 2832574 | 2832397 | ID=Msa0829830-mRNA-1:exon:965;Parent=Msa0829830-mRNA-1 |
| chr5_4 | exon | 2832700 | 2832748 | 2832700 | ID=Msa0829830-mRNA-1:exon:966;Parent=Msa0829830-mRNA-1 |
| chr5_4 | exon | 2832994 | 2833560 | 2832994 | ID=Msa0829830-mRNA-1:exon:967;Parent=Msa0829830-mRNA-1 |
| chr5_4 | exon | 2834508 | 2834879 | 2834508 | ID=Msa0829830-mRNA-1:exon:968;Parent=Msa0829830-mRNA-1 |
| chr5_4 | exon | 2835268 | 2835549 | 2835268 | ID=Msa0829830-mRNA-1:exon:969;Parent=Msa0829830-mRNA-1 |
| chr5_4 | five_prime_UTR | 2832397 | 2832574 | 2832397 | ID=Msa0829830-mRNA-1:five_prime_utr;Parent=Msa0829830-mRNA-1 |
| chr5_4 | five_prime_UTR | 2832700 | 2832700 | 2832700 | ID=Msa0829830-mRNA-1:five_prime_utr;Parent=Msa0829830-mRNA-1 |
| chr5_4 | CDS | 2832701 | 2832748 | 2832701 | ID=Msa0829830-mRNA-1:cds;Parent=Msa0829830-mRNA-1 |
| chr5_4 | CDS | 2832994 | 2833560 | 2832994 | ID=Msa0829830-mRNA-1:cds;Parent=Msa0829830-mRNA-1 |
| chr5_4 | CDS | 2834508 | 2834879 | 2834508 | ID=Msa0829830-mRNA-1:cds;Parent=Msa0829830-mRNA-1 |
| chr5_4 | CDS | 2835268 | 2835342 | 2835268 | ID=Msa0829830-mRNA-1:cds;Parent=Msa0829830-mRNA-1 |
| chr5_4 | three_prime_UTR | 2835343 | 2835549 | 2835343 | ID=Msa0829830-mRNA-1:three_prime_utr;Parent=Msa0829830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
