Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0257330 | XP_003596613.1 | 98.261 | 230 | 3 | 1 | 1 | 229 | 1 | 230 | 1.66e-163 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0257330 | sp|Q9FH37|ILR3_ARATH | 69.362 | 235 | 65 | 5 | 1 | 229 | 1 | 234 | 1.26e-106 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0257330 | B7FHX6 | 98.261 | 230 | 3 | 1 | 1 | 229 | 1 | 230 | 7.93e-164 | 461 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0257330 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043980 | Msa0257330 | -0.801667 | 8.081317e-49 | -8.615850e-47 |
| Msa0072420 | Msa0257330 | -0.819410 | 1.178441e-52 | -8.615850e-47 |
| Msa0204960 | Msa0257330 | -0.809131 | 2.202336e-50 | -8.615850e-47 |
| Msa0257330 | Msa0281530 | -0.816595 | 5.098980e-52 | -8.615850e-47 |
| Msa0257330 | Msa0285330 | -0.808539 | 2.947661e-50 | -8.615850e-47 |
| Msa0257330 | Msa0287410 | -0.807429 | 5.077719e-50 | -8.615850e-47 |
| Msa0257330 | Msa0296630 | 0.893056 | 8.966275e-75 | -8.615850e-47 |
| Msa0257330 | Msa0305410 | -0.807855 | 4.122736e-50 | -8.615850e-47 |
| Msa0257330 | Msa0317960 | -0.800133 | 1.662665e-48 | -8.615850e-47 |
| Msa0257330 | Msa0385500 | -0.801071 | 1.070247e-48 | -8.615850e-47 |
| Msa0257330 | Msa0398670 | -0.802108 | 6.560521e-49 | -8.615850e-47 |
| Msa0257330 | Msa0539410 | -0.838190 | 3.332645e-57 | -8.615850e-47 |
| Msa0257330 | Msa0542290 | -0.805886 | 1.074724e-49 | -8.615850e-47 |
| Msa0257330 | Msa0547160 | -0.800173 | 1.631579e-48 | -8.615850e-47 |
| Msa0257330 | Msa0624060 | -0.816632 | 5.003787e-52 | -8.615850e-47 |
| Msa0257330 | Msa0650050 | 0.803241 | 3.828758e-49 | -8.615850e-47 |
| Msa0257330 | Msa0676130 | -0.813563 | 2.403098e-51 | -8.615850e-47 |
| Msa0257330 | Msa0676180 | -0.816322 | 5.870399e-52 | -8.615850e-47 |
| Msa0257330 | Msa0677530 | -0.810908 | 9.122278e-51 | -8.615850e-47 |
| Msa0257330 | Msa0709400 | -0.804401 | 2.198546e-49 | -8.615850e-47 |
| Msa0257330 | Msa0741440 | -0.809717 | 1.647894e-50 | -8.615850e-47 |
| Msa0257330 | Msa0822500 | -0.805328 | 1.407480e-49 | -8.615850e-47 |
| Msa0257330 | Msa0831100 | -0.802254 | 6.121799e-49 | -8.615850e-47 |
| Msa0257330 | Msa0894400 | -0.803848 | 2.865324e-49 | -8.615850e-47 |
| Msa0257330 | Msa0936480 | -0.807734 | 4.374166e-50 | -8.615850e-47 |
| Msa0257330 | Msa0964310 | -0.806074 | 9.815098e-50 | -8.615850e-47 |
| Msa0257330 | Msa0980880 | -0.806956 | 6.395658e-50 | -8.615850e-47 |
| Msa0257330 | Msa1089460 | -0.804565 | 2.032339e-49 | -8.615850e-47 |
| Msa0257330 | Msa1109680 | -0.827135 | 1.848598e-54 | -8.615850e-47 |
| Msa0257330 | Msa1294820 | -0.842192 | 3.003865e-58 | -8.615850e-47 |
| Msa0257330 | Msa1305660 | -0.838287 | 3.145414e-57 | -8.615850e-47 |
| Msa0257330 | Msa1307180 | -0.802875 | 4.558751e-49 | -8.615850e-47 |
| Msa0257330 | Msa1315750 | -0.802779 | 4.771040e-49 | -8.615850e-47 |
| Msa0257330 | Msa1325410 | 0.810515 | 1.109518e-50 | -8.615850e-47 |
| Msa0257330 | Msa1370070 | 0.819112 | 1.378137e-52 | -8.615850e-47 |
| Msa0257330 | Msa1378410 | -0.812195 | 4.790826e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0257330 | MtrunA17_Chr2g0319301 | 98.261 | 230 | 3 | 1 | 1 | 229 | 1 | 230 | 1.53e-167 | 461 |
| Msa0257330 | MtrunA17_Chr4g0042041 | 78.151 | 238 | 42 | 4 | 1 | 229 | 1 | 237 | 1.02e-124 | 353 |
| Msa0257330 | MtrunA17_Chr2g0323031 | 50.195 | 257 | 84 | 8 | 9 | 229 | 12 | 260 | 5.45e-73 | 222 |
| Msa0257330 | MtrunA17_Chr1g0167821 | 51.705 | 176 | 81 | 1 | 54 | 229 | 75 | 246 | 2.39e-57 | 182 |
| Msa0257330 | MtrunA17_Chr4g0038511 | 51.515 | 99 | 47 | 1 | 69 | 167 | 6 | 103 | 3.93e-23 | 94.4 |
| Msa0257330 | MtrunA17_Chr1g0161461 | 36.806 | 144 | 78 | 3 | 32 | 167 | 36 | 174 | 1.66e-19 | 85.9 |
| Msa0257330 | MtrunA17_Chr4g0060591 | 33.898 | 118 | 74 | 2 | 51 | 168 | 13 | 126 | 1.96e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0257330 | AT5G54680.1 | 69.362 | 235 | 65 | 5 | 1 | 229 | 1 | 234 | 1.28e-107 | 310 |
| Msa0257330 | AT1G51070.1 | 62.343 | 239 | 67 | 6 | 1 | 229 | 1 | 226 | 4.44e-95 | 278 |
| Msa0257330 | AT1G51070.2 | 65.829 | 199 | 57 | 4 | 36 | 229 | 100 | 292 | 2.00e-84 | 253 |
| Msa0257330 | AT4G14410.2 | 51.531 | 196 | 78 | 6 | 37 | 229 | 96 | 277 | 1.18e-54 | 176 |
| Msa0257330 | AT4G14410.3 | 51.531 | 196 | 78 | 6 | 37 | 229 | 96 | 277 | 1.18e-54 | 176 |
| Msa0257330 | AT4G14410.1 | 51.531 | 196 | 78 | 6 | 37 | 229 | 102 | 283 | 1.59e-54 | 176 |
| Msa0257330 | AT3G23210.2 | 52.261 | 199 | 87 | 5 | 35 | 229 | 97 | 291 | 2.27e-54 | 176 |
| Msa0257330 | AT3G23210.1 | 52.261 | 199 | 87 | 5 | 35 | 229 | 126 | 320 | 5.70e-54 | 176 |
| Msa0257330 | AT3G19860.1 | 49.020 | 102 | 51 | 1 | 66 | 167 | 2 | 102 | 3.48e-22 | 92.4 |
| Msa0257330 | AT3G19860.3 | 49.020 | 102 | 51 | 1 | 66 | 167 | 33 | 133 | 6.03e-22 | 92.4 |
| Msa0257330 | AT3G19860.2 | 49.020 | 102 | 51 | 1 | 66 | 167 | 55 | 155 | 6.84e-22 | 92.4 |
| Msa0257330 | AT4G36060.4 | 38.235 | 136 | 73 | 5 | 69 | 199 | 26 | 155 | 1.13e-18 | 82.8 |
| Msa0257330 | AT4G36060.2 | 39.098 | 133 | 76 | 4 | 69 | 199 | 26 | 155 | 1.86e-18 | 82.0 |
| Msa0257330 | AT4G36060.3 | 38.235 | 136 | 73 | 5 | 69 | 199 | 44 | 173 | 3.10e-18 | 81.6 |
| Msa0257330 | AT4G36060.1 | 38.971 | 136 | 72 | 5 | 69 | 199 | 44 | 173 | 4.23e-18 | 81.3 |
| Msa0257330 | AT3G47640.1 | 30.128 | 156 | 93 | 4 | 73 | 216 | 31 | 182 | 7.02e-12 | 63.5 |
| Msa0257330 | AT3G47640.3 | 30.128 | 156 | 93 | 4 | 73 | 216 | 31 | 182 | 7.02e-12 | 63.5 |
| Msa0257330 | AT3G47640.2 | 30.128 | 156 | 93 | 4 | 73 | 216 | 31 | 182 | 7.02e-12 | 63.5 |
Find 95 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGAAGATTAAAGAGTTAA+AGG | 0.125284 | 2_2:+53069601 | Msa0257330:CDS |
| AATTTGAGTCTTTCAACTTT+TGG | 0.207928 | 2_2:-53069568 | None:intergenic |
| AAATTGTACGGTGCCAATTT+AGG | 0.247251 | 2_2:-53070030 | None:intergenic |
| TGAAAGGCATTAACTTGTTT+GGG | 0.247330 | 2_2:-53069920 | None:intergenic |
| ATGAAAGGCATTAACTTGTT+TGG | 0.257284 | 2_2:-53069921 | None:intergenic |
| CGTCCACCAGTTGCCTAAAT+TGG | 0.258424 | 2_2:+53070017 | Msa0257330:exon |
| ATTGATAGGTTTGTTGAATT+AGG | 0.284956 | 2_2:+53069452 | Msa0257330:intron |
| CCAGCTTTAATATTTGTTGC+TGG | 0.304825 | 2_2:+53070226 | Msa0257330:three_prime_UTR |
| GGGAAAATTCAACCCAACTA+TGG | 0.314333 | 2_2:+53067995 | Msa0257330:exon |
| TAAAAGTTAATAAGCTTGTT+TGG | 0.333347 | 2_2:+53070193 | Msa0257330:three_prime_UTR |
| AGGAGGGTGTGTCAAGAAAC+TGG | 0.351738 | 2_2:-53069862 | None:intergenic |
| ATGTGCTCCTTCCAGCTCTA+AGG | 0.373277 | 2_2:+53069296 | Msa0257330:CDS |
| ATTGAAGAAACTTGTTTGTT+TGG | 0.373340 | 2_2:-53067863 | None:intergenic |
| AAGTTGAAAGACTCAAATTC+TGG | 0.381671 | 2_2:+53069572 | Msa0257330:CDS |
| GCATTAACTTGTTTGGGGCT+TGG | 0.383016 | 2_2:-53069914 | None:intergenic |
| CTCTGCTCCTAGTATTGAAA+TGG | 0.383024 | 2_2:+53068912 | Msa0257330:intron |
| GCAAATGCAGCAGGGATTGC+AGG | 0.388118 | 2_2:-53069882 | None:intergenic |
| AAGGAGCCATCGACAGAAAC+AGG | 0.397378 | 2_2:-53068071 | None:intergenic |
| CCGAATGGTGACACAGTTGC+GGG | 0.410732 | 2_2:+53069538 | Msa0257330:CDS |
| TACATAAAGAAACTTTCATT+AGG | 0.433731 | 2_2:-53070374 | None:intergenic |
| TGTTGAATTAGGCTCCATCT+TGG | 0.436518 | 2_2:+53069463 | Msa0257330:CDS |
| TAAGGCTGAGAAGGAGAAGT+TGG | 0.437128 | 2_2:+53069809 | Msa0257330:CDS |
| GAAGGAGAAGTTGGAGCAGC+AGG | 0.442475 | 2_2:+53069818 | Msa0257330:CDS |
| ACGGTGCCAATTTAGGCAAC+TGG | 0.444930 | 2_2:-53070023 | None:intergenic |
| ATGCCTTTCATGAGTTATCC+AGG | 0.449494 | 2_2:+53069933 | Msa0257330:CDS |
| AGTACAGTAACATGTTACTT+TGG | 0.451758 | 2_2:+53070253 | Msa0257330:three_prime_UTR |
| ATACATAGTAAATAACTAGA+AGG | 0.454516 | 2_2:-53070107 | None:intergenic |
| AGGAAAGAGTGCATGGGTAA+AGG | 0.455942 | 2_2:-53070087 | None:intergenic |
| AATTGCCACATGGCAACTCC+TGG | 0.456430 | 2_2:-53069951 | None:intergenic |
| CCCGCAACTGTGTCACCATT+CGG | 0.471915 | 2_2:-53069538 | None:intergenic |
| TGATGAGAAGCAGAGGCTTA+AGG | 0.477872 | 2_2:+53069791 | Msa0257330:CDS |
| AAATCTCATTTCTTCACCGC+CGG | 0.486690 | 2_2:+53067954 | Msa0257330:five_prime_UTR |
| TTTCCCCGGAAAACACCAAT+TGG | 0.488899 | 2_2:+53068018 | Msa0257330:CDS |
| GAGAGAAGTTGCGGAGGGAT+AGG | 0.490114 | 2_2:+53069325 | Msa0257330:CDS |
| CCTTGATGAGCAAATGCAGC+AGG | 0.490383 | 2_2:-53069891 | None:intergenic |
| AGTTACCTCTTCTTCGAACC+AGG | 0.496718 | 2_2:-53068973 | None:intergenic |
| CCAGCAACAAATATTAAAGC+TGG | 0.496886 | 2_2:-53070226 | None:intergenic |
| TTCTTGTTGCAGAGGTAGAT+CGG | 0.503971 | 2_2:+53069269 | Msa0257330:intron |
| TCCGAATGGTGACACAGTTG+CGG | 0.503977 | 2_2:+53069537 | Msa0257330:CDS |
| TTAGGCTCCATCTTGGAGCC+TGG | 0.505934 | 2_2:+53069470 | Msa0257330:CDS |
| TGTGAGGTATCCACGGCGGC+TGG | 0.507559 | 2_2:-53069981 | None:intergenic |
| AACTAGAAGGAAAGAGTGCA+TGG | 0.509132 | 2_2:-53070094 | None:intergenic |
| GAAATTCCTGTTTCTGTCGA+TGG | 0.514909 | 2_2:+53068065 | Msa0257330:CDS |
| CAGGAATTTCATCAATCAAA+GGG | 0.518186 | 2_2:-53068052 | None:intergenic |
| GCCATTGGAGAGTTGAGGTG+GGG | 0.518653 | 2_2:-53068108 | None:intergenic |
| TTTCCGGGGAAACCATAGTT+GGG | 0.520904 | 2_2:-53068007 | None:intergenic |
| AGGGTAATCGAAAAGCCAAT+TGG | 0.523695 | 2_2:-53068033 | None:intergenic |
| CGCCATTGGAGAGTTGAGGT+GGG | 0.524275 | 2_2:-53068109 | None:intergenic |
| ACAGGAATTTCATCAATCAA+AGG | 0.524589 | 2_2:-53068053 | None:intergenic |
| GCTCCATCTTGGAGCCTGGA+AGG | 0.524851 | 2_2:+53069474 | Msa0257330:CDS |
| CTCTCGACATGCCTTAGAGC+TGG | 0.527575 | 2_2:-53069307 | None:intergenic |
| CAACCCAACTATGGTTTCCC+CGG | 0.528497 | 2_2:+53068004 | Msa0257330:exon |
| GCAGAGGCTTAAGGCTGAGA+AGG | 0.531438 | 2_2:+53069800 | Msa0257330:CDS |
| CCTGCTGCATTTGCTCATCA+AGG | 0.536277 | 2_2:+53069891 | Msa0257330:CDS |
| AATCTCATTTCTTCACCGCC+GGG | 0.536866 | 2_2:+53067955 | Msa0257330:five_prime_UTR |
| CACCTCAACTCTCCAATGGC+GGG | 0.541239 | 2_2:+53068111 | Msa0257330:CDS |
| GAGGTATCCACGGCGGCTGG+TGG | 0.543817 | 2_2:-53069978 | None:intergenic |
| CAAAATCAGATACCCGCCAT+TGG | 0.557526 | 2_2:-53068123 | None:intergenic |
| GTGTGTCAAGAAACTGGGTT+GGG | 0.557971 | 2_2:-53069856 | None:intergenic |
| TAAGCCTCTGCTTCTCATCA+CGG | 0.559176 | 2_2:-53069788 | None:intergenic |
| AAGAACCTGGTTCGAAGAAG+AGG | 0.561194 | 2_2:+53068968 | Msa0257330:CDS |
| CCGCCATTGGAGAGTTGAGG+TGG | 0.568621 | 2_2:-53068110 | None:intergenic |
| GAAAGGCATTAACTTGTTTG+GGG | 0.569345 | 2_2:-53069919 | None:intergenic |
| CCATTGGAGAGTTGAGGTGG+GGG | 0.574009 | 2_2:-53068107 | None:intergenic |
| AGGCCTTCCAGGCTCCAAGA+TGG | 0.582599 | 2_2:-53069477 | None:intergenic |
| AATGGATGATAGCTCTCTAG+TGG | 0.589069 | 2_2:+53068930 | Msa0257330:CDS |
| CGACATGCCTTAGAGCTGGA+AGG | 0.592843 | 2_2:-53069303 | None:intergenic |
| CCACCTCAACTCTCCAATGG+CGG | 0.595417 | 2_2:+53068110 | Msa0257330:CDS |
| ATTCATGCCACCAGCCGCCG+TGG | 0.596384 | 2_2:+53069971 | Msa0257330:CDS |
| AGGCATGTCGAGAGAAGTTG+CGG | 0.604709 | 2_2:+53069316 | Msa0257330:CDS |
| ATGATCTTGTGAGGTATCCA+CGG | 0.609314 | 2_2:-53069988 | None:intergenic |
| ACTCCTGGATAACTCATGAA+AGG | 0.613176 | 2_2:-53069936 | None:intergenic |
| TCTGATGGTATCAAAGAACC+TGG | 0.613566 | 2_2:+53068955 | Msa0257330:CDS |
| TACCCGCCATTGGAGAGTTG+AGG | 0.621755 | 2_2:-53068113 | None:intergenic |
| AACTCCGTGATGAGAAGCAG+AGG | 0.627738 | 2_2:+53069784 | Msa0257330:CDS |
| GGTGTGTCAAGAAACTGGGT+TGG | 0.631646 | 2_2:-53069857 | None:intergenic |
| AGCTCTCTAGTGGATTCTGA+TGG | 0.634077 | 2_2:+53068940 | Msa0257330:CDS |
| CAATTTAGGCAACTGGTGGA+CGG | 0.634684 | 2_2:-53070016 | None:intergenic |
| ATGGCTCCTTCGCCTTCACG+TGG | 0.638692 | 2_2:+53068084 | Msa0257330:CDS |
| CTTGATGAGCAAATGCAGCA+GGG | 0.642514 | 2_2:-53069890 | None:intergenic |
| GTGCCAATTTAGGCAACTGG+TGG | 0.644295 | 2_2:-53070020 | None:intergenic |
| AATGCAGCAGGGATTGCAGG+AGG | 0.644570 | 2_2:-53069879 | None:intergenic |
| ACTAGAAGGAAAGAGTGCAT+GGG | 0.648845 | 2_2:-53070093 | None:intergenic |
| ATGCAGCAGGGATTGCAGGA+GGG | 0.653807 | 2_2:-53069878 | None:intergenic |
| CATGTCGAGAGAAGTTGCGG+AGG | 0.656044 | 2_2:+53069319 | Msa0257330:CDS |
| ATGTCGAGAGAAGTTGCGGA+GGG | 0.659997 | 2_2:+53069320 | Msa0257330:CDS |
| TCTGATTGATGCTGTCCGAA+TGG | 0.662212 | 2_2:+53069523 | Msa0257330:CDS |
| TGGTGGCATGAATTGCCACA+TGG | 0.684045 | 2_2:-53069961 | None:intergenic |
| AAGGCCTCCTAAAACAGACA+AGG | 0.687344 | 2_2:+53069493 | Msa0257330:CDS |
| GGAGGGTGTGTCAAGAAACT+GGG | 0.689856 | 2_2:-53069861 | None:intergenic |
| GCCTCCTAAAACAGACAAGG+CGG | 0.693132 | 2_2:+53069496 | Msa0257330:CDS |
| ACGGAGTACATGATCTTGTG+AGG | 0.697745 | 2_2:-53069997 | None:intergenic |
| CGAATGGTGACACAGTTGCG+GGG | 0.732614 | 2_2:+53069539 | Msa0257330:CDS |
| GTTATCCAGGAGTTGCCATG+TGG | 0.743485 | 2_2:+53069946 | Msa0257330:CDS |
| ATCTTGTGAGGTATCCACGG+CGG | 0.745646 | 2_2:-53069985 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAAATACAAAAATAT+GGG | - | chr2_2:53069254-53069273 | None:intergenic | 10.0% |
| !!! | TCTTTTAATGGTAATAAAAT+GGG | - | chr2_2:53067772-53067791 | None:intergenic | 15.0% |
| !!! | TTCTTTTAATGGTAATAAAA+TGG | - | chr2_2:53067773-53067792 | None:intergenic | 15.0% |
| !!! | AAAGTTTGAATTTTTTAACA+TGG | + | chr2_2:53068219-53068238 | Msa0257330:intron | 15.0% |
| !!! | AAGTTTGAATTTTTTAACAT+GGG | + | chr2_2:53068220-53068239 | Msa0257330:intron | 15.0% |
| !! | ACTTAGTAAATTAATACTAT+GGG | - | chr2_2:53068874-53068893 | None:intergenic | 15.0% |
| !! | AACTTAGTAAATTAATACTA+TGG | - | chr2_2:53068875-53068894 | None:intergenic | 15.0% |
| !! | CAAGAAAAAATACAAAAATA+TGG | - | chr2_2:53069255-53069274 | None:intergenic | 15.0% |
| !!! | AAATGAAATGATTTAGAATA+TGG | - | chr2_2:53069674-53069693 | None:intergenic | 15.0% |
| !! | AGTTAAAGTATAAAAATGAA+GGG | - | chr2_2:53069697-53069716 | None:intergenic | 15.0% |
| !!! | TTTTAGTCAATATTTTTCAA+CGG | - | chr2_2:53070350-53070369 | None:intergenic | 15.0% |
| !! | CACTTCATTTGAAAAAAAAA+TGG | + | chr2_2:53067897-53067916 | Msa0257330:five_prime_UTR | 20.0% |
| !! | AAACCCTAAATTAAGAAAAT+GGG | - | chr2_2:53068149-53068168 | None:intergenic | 20.0% |
| !!! | TACAAGTGTAATTTTTGAAT+TGG | + | chr2_2:53068397-53068416 | Msa0257330:intron | 20.0% |
| !! | CAGTTAAAGTATAAAAATGA+AGG | - | chr2_2:53069698-53069717 | None:intergenic | 20.0% |
| !! | ATACATAGTAAATAACTAGA+AGG | - | chr2_2:53070110-53070129 | None:intergenic | 20.0% |
| !!! | TAAAAGTTAATAAGCTTGTT+TGG | + | chr2_2:53070193-53070212 | Msa0257330:three_prime_UTR | 20.0% |
| !! | TACATAAAGAAACTTTCATT+AGG | - | chr2_2:53070377-53070396 | None:intergenic | 20.0% |
| ! | AAAATAAAAACCACGTTTGA+GGG | - | chr2_2:53067837-53067856 | None:intergenic | 25.0% |
| ! | AAAAATAAAAACCACGTTTG+AGG | - | chr2_2:53067838-53067857 | None:intergenic | 25.0% |
| !! | ATTGAAGAAACTTGTTTGTT+TGG | - | chr2_2:53067866-53067885 | None:intergenic | 25.0% |
| !! | TTTGCCCATTTTCTTAATTT+AGG | + | chr2_2:53068142-53068161 | Msa0257330:intron | 25.0% |
| !! | TTGCCCATTTTCTTAATTTA+GGG | + | chr2_2:53068143-53068162 | Msa0257330:intron | 25.0% |
| ! | GAAACCCTAAATTAAGAAAA+TGG | - | chr2_2:53068150-53068169 | None:intergenic | 25.0% |
| ! | AGCAACAAATTTGAAAAAAG+GGG | - | chr2_2:53068182-53068201 | None:intergenic | 25.0% |
| ! | CAGCAACAAATTTGAAAAAA+GGG | - | chr2_2:53068183-53068202 | None:intergenic | 25.0% |
| ! | TCAGCAACAAATTTGAAAAA+AGG | - | chr2_2:53068184-53068203 | None:intergenic | 25.0% |
| ! | TTAATTCTCACAAATTGTTG+TGG | + | chr2_2:53068289-53068308 | Msa0257330:intron | 25.0% |
| ! | AATTGATATGTGTTAAACAC+TGG | + | chr2_2:53068601-53068620 | Msa0257330:intron | 25.0% |
| ! | GTAAATTAATACTATGGGAT+GGG | - | chr2_2:53068869-53068888 | None:intergenic | 25.0% |
| ! | AGTAAATTAATACTATGGGA+TGG | - | chr2_2:53068870-53068889 | None:intergenic | 25.0% |
| ! | CTTGTTTAATGAGAAATGAA+AGG | - | chr2_2:53069010-53069029 | None:intergenic | 25.0% |
| ! | GTAATATAATTGAGGCAAAT+TGG | + | chr2_2:53069110-53069129 | Msa0257330:intron | 25.0% |
| ! | TCTTATAGTATACAAGCAAT+AGG | - | chr2_2:53069222-53069241 | None:intergenic | 25.0% |
| ! | ATAATAAAAGGCAAGATAGT+GGG | - | chr2_2:53069368-53069387 | None:intergenic | 25.0% |
| ! | AATAATAAAAGGCAAGATAG+TGG | - | chr2_2:53069369-53069388 | None:intergenic | 25.0% |
| ! | CTAATATGATTGACATTGAT+AGG | + | chr2_2:53069438-53069457 | Msa0257330:intron | 25.0% |
| !!! | ATTGATAGGTTTGTTGAATT+AGG | + | chr2_2:53069452-53069471 | Msa0257330:intron | 25.0% |
| !! | ATTTGAGTCTTTCAACTTTT+GGG | - | chr2_2:53069570-53069589 | None:intergenic | 25.0% |
| !! | AATTTGAGTCTTTCAACTTT+TGG | - | chr2_2:53069571-53069590 | None:intergenic | 25.0% |
| ! | AGAGAAGATTAAAGAGTTAA+AGG | + | chr2_2:53069601-53069620 | Msa0257330:CDS | 25.0% |
| ! | AGATTAAAGAGTTAAAGGTA+AGG | + | chr2_2:53069606-53069625 | Msa0257330:intron | 25.0% |
| ! | AAATTGCTCAAAATCAATTG+AGG | - | chr2_2:53069632-53069651 | None:intergenic | 25.0% |
| !! | TGATTTTGAGCAATTTTCTT+TGG | + | chr2_2:53069636-53069655 | Msa0257330:intron | 25.0% |
| !! | GATTTTGAGCAATTTTCTTT+GGG | + | chr2_2:53069637-53069656 | Msa0257330:intron | 25.0% |
| !!! | ATTTTTTTGGGATTCCATTA+TGG | + | chr2_2:53070049-53070068 | Msa0257330:three_prime_UTR | 25.0% |
| CAGGAATTTCATCAATCAAA+GGG | - | chr2_2:53068055-53068074 | None:intergenic | 30.0% | |
| ACAGGAATTTCATCAATCAA+AGG | - | chr2_2:53068056-53068075 | None:intergenic | 30.0% | |
| ! | CAAATTGTTGTGGTTTTCAT+TGG | + | chr2_2:53068299-53068318 | Msa0257330:intron | 30.0% |
| ! | TTAGTGATGTTTTGTGTACT+TGG | + | chr2_2:53068332-53068351 | Msa0257330:intron | 30.0% |
| ! | TAGTGATGTTTTGTGTACTT+GGG | + | chr2_2:53068333-53068352 | Msa0257330:intron | 30.0% |
| TTTGTAGTAGAACTTGAACT+AGG | + | chr2_2:53068367-53068386 | Msa0257330:intron | 30.0% | |
| !! | CCTAGTTTTCCATAATACAA+GGG | - | chr2_2:53068699-53068718 | None:intergenic | 30.0% |
| !! | TCCTAGTTTTCCATAATACA+AGG | - | chr2_2:53068700-53068719 | None:intergenic | 30.0% |
| AAGGAATTGCAACAGTAATT+GGG | - | chr2_2:53068784-53068803 | None:intergenic | 30.0% | |
| AAAGGAATTGCAACAGTAAT+TGG | - | chr2_2:53068785-53068804 | None:intergenic | 30.0% | |
| ! | ATTCCTTTACCTTGGATTTT+AGG | + | chr2_2:53068797-53068816 | Msa0257330:intron | 30.0% |
| AAACCTAAAATCCAAGGTAA+AGG | - | chr2_2:53068803-53068822 | None:intergenic | 30.0% | |
| !!! | TTACCTTGGATTTTAGGTTT+TGG | + | chr2_2:53068803-53068822 | Msa0257330:intron | 30.0% |
| AAACCAAAACCTAAAATCCA+AGG | - | chr2_2:53068809-53068828 | None:intergenic | 30.0% | |
| CTATCATCCATTTCAATACT+AGG | - | chr2_2:53068922-53068941 | None:intergenic | 30.0% | |
| !! | GCTTTGAGGTAATATAATTG+AGG | + | chr2_2:53069102-53069121 | Msa0257330:intron | 30.0% |
| GCAAATTGGCAATTTAACAA+TGG | + | chr2_2:53069124-53069143 | Msa0257330:intron | 30.0% | |
| ! | TTTTTATTGATGCCACTGAA+CGG | - | chr2_2:53069184-53069203 | None:intergenic | 30.0% |
| !!! | TGTATTTTTTCTTGTTGCAG+AGG | + | chr2_2:53069261-53069280 | Msa0257330:intron | 30.0% |
| TAATAAAAGGCAAGATAGTG+GGG | - | chr2_2:53069367-53069386 | None:intergenic | 30.0% | |
| AAGAGGAGAGGAATAATAAA+AGG | - | chr2_2:53069380-53069399 | None:intergenic | 30.0% | |
| AAGTTGAAAGACTCAAATTC+TGG | + | chr2_2:53069572-53069591 | Msa0257330:CDS | 30.0% | |
| !! | AATTTTCTTTGGGAGATAGA+AGG | + | chr2_2:53069647-53069666 | Msa0257330:intron | 30.0% |
| TTGAATTCTATCTACTATGC+AGG | + | chr2_2:53069749-53069768 | Msa0257330:intron | 30.0% | |
| !! | TGAAAGGCATTAACTTGTTT+GGG | - | chr2_2:53069923-53069942 | None:intergenic | 30.0% |
| !! | ATGAAAGGCATTAACTTGTT+TGG | - | chr2_2:53069924-53069943 | None:intergenic | 30.0% |
| GGAATCCCAAAAAAATTGTA+CGG | - | chr2_2:53070045-53070064 | None:intergenic | 30.0% | |
| ! | ATACAACTTTTAGGCCATAA+TGG | - | chr2_2:53070066-53070085 | None:intergenic | 30.0% |
| ! | GGTAAAGGAATACAACTTTT+AGG | - | chr2_2:53070075-53070094 | None:intergenic | 30.0% |
| ! | AGTACAGTAACATGTTACTT+TGG | + | chr2_2:53070253-53070272 | Msa0257330:three_prime_UTR | 30.0% |
| ! | AAAATTGTGAATTTTCCCGG+CGG | - | chr2_2:53067973-53067992 | None:intergenic | 35.0% |
| ! | CGGAAAATTGTGAATTTTCC+CGG | - | chr2_2:53067976-53067995 | None:intergenic | 35.0% |
| ! | CGGGAAAATTCACAATTTTC+CGG | + | chr2_2:53067974-53067993 | Msa0257330:five_prime_UTR | 35.0% |
| ! | GGGAAAATTCACAATTTTCC+GGG | + | chr2_2:53067975-53067994 | Msa0257330:five_prime_UTR | 35.0% |
| !!! | ATAGTTGGGTTGAATTTTCC+CGG | - | chr2_2:53067996-53068015 | None:intergenic | 35.0% |
| !! | AAAAGCCAATTGGTGTTTTC+CGG | - | chr2_2:53068026-53068045 | None:intergenic | 35.0% |
| ! | AGTGATGTTTTGTGTACTTG+GGG | + | chr2_2:53068334-53068353 | Msa0257330:intron | 35.0% |
| TAGTAGAACTTGAACTAGGT+TGG | + | chr2_2:53068371-53068390 | Msa0257330:intron | 35.0% | |
| TGTTCTTGAATCTTCTGTTC+TGG | + | chr2_2:53068430-53068449 | Msa0257330:intron | 35.0% | |
| CCCTTGTATTATGGAAAACT+AGG | + | chr2_2:53068696-53068715 | Msa0257330:intron | 35.0% | |
| AGGAATTGCAACAGTAATTG+GGG | - | chr2_2:53068783-53068802 | None:intergenic | 35.0% | |
| TCAACTAACTTACAGCTTTG+AGG | + | chr2_2:53069088-53069107 | Msa0257330:intron | 35.0% | |
| TGAAGATAATTAGCGATAGC+AGG | + | chr2_2:53069156-53069175 | Msa0257330:intron | 35.0% | |
| ACAAGCAATAGGATTTGTCA+GGG | - | chr2_2:53069211-53069230 | None:intergenic | 35.0% | |
| TACAAGCAATAGGATTTGTC+AGG | - | chr2_2:53069212-53069231 | None:intergenic | 35.0% | |
| TTATTCCTCTCCTCTTTACT+CGG | + | chr2_2:53069384-53069403 | Msa0257330:intron | 35.0% | |
| !! | GAAAGGCATTAACTTGTTTG+GGG | - | chr2_2:53069922-53069941 | None:intergenic | 35.0% |
| ! | AAATTGTACGGTGCCAATTT+AGG | - | chr2_2:53070033-53070052 | None:intergenic | 35.0% |
| !!! | TTGGCACCGTACAATTTTTT+TGG | + | chr2_2:53070036-53070055 | Msa0257330:three_prime_UTR | 35.0% |
| !!! | TGGCACCGTACAATTTTTTT+GGG | + | chr2_2:53070037-53070056 | Msa0257330:three_prime_UTR | 35.0% |
| CCAGCAACAAATATTAAAGC+TGG | - | chr2_2:53070229-53070248 | None:intergenic | 35.0% | |
| ! | CCAGCTTTAATATTTGTTGC+TGG | + | chr2_2:53070226-53070245 | Msa0257330:three_prime_UTR | 35.0% |
| GAGGGTAGAGAAAAAAAGAG+TGG | - | chr2_2:53067819-53067838 | None:intergenic | 40.0% | |
| ! | TTTTTCTCTACCCTCAAACG+TGG | + | chr2_2:53067824-53067843 | Msa0257330:five_prime_UTR | 40.0% |
| AAATCTCATTTCTTCACCGC+CGG | + | chr2_2:53067954-53067973 | Msa0257330:five_prime_UTR | 40.0% | |
| GGGAAAATTCAACCCAACTA+TGG | + | chr2_2:53067995-53068014 | Msa0257330:exon | 40.0% | |
| !! | AAAGCCAATTGGTGTTTTCC+GGG | - | chr2_2:53068025-53068044 | None:intergenic | 40.0% |
| AGGGTAATCGAAAAGCCAAT+TGG | - | chr2_2:53068036-53068055 | None:intergenic | 40.0% | |
| !! | GAAATTCCTGTTTCTGTCGA+TGG | + | chr2_2:53068065-53068084 | Msa0257330:CDS | 40.0% |
| ! | TGAATCTTCTGTTCTGGACA+TGG | + | chr2_2:53068436-53068455 | Msa0257330:intron | 40.0% |
| CGTCAACAGCTATTGAAACA+AGG | - | chr2_2:53068483-53068502 | None:intergenic | 40.0% | |
| AACCTGCATCCCTTGTATTA+TGG | + | chr2_2:53068687-53068706 | Msa0257330:intron | 40.0% | |
| TTCCATAATACAAGGGATGC+AGG | - | chr2_2:53068692-53068711 | None:intergenic | 40.0% | |
| CTGTTGCAATTCCTTTACCT+TGG | + | chr2_2:53068789-53068808 | Msa0257330:intron | 40.0% | |
| ! | CTCTGCTCCTAGTATTGAAA+TGG | + | chr2_2:53068912-53068931 | Msa0257330:intron | 40.0% |
| AATGGATGATAGCTCTCTAG+TGG | + | chr2_2:53068930-53068949 | Msa0257330:CDS | 40.0% | |
| TCTGATGGTATCAAAGAACC+TGG | + | chr2_2:53068955-53068974 | Msa0257330:CDS | 40.0% | |
| TTCTTGTTGCAGAGGTAGAT+CGG | + | chr2_2:53069269-53069288 | Msa0257330:intron | 40.0% | |
| TGGGTGTAGACTGTGTATTT+GGG | + | chr2_2:53069407-53069426 | Msa0257330:intron | 40.0% | |
| TGTTGAATTAGGCTCCATCT+TGG | + | chr2_2:53069463-53069482 | Msa0257330:CDS | 40.0% | |
| ATGCCTTTCATGAGTTATCC+AGG | + | chr2_2:53069933-53069952 | Msa0257330:CDS | 40.0% | |
| ACTCCTGGATAACTCATGAA+AGG | - | chr2_2:53069939-53069958 | None:intergenic | 40.0% | |
| ! | ATGATCTTGTGAGGTATCCA+CGG | - | chr2_2:53069991-53070010 | None:intergenic | 40.0% |
| ! | ACTAGAAGGAAAGAGTGCAT+GGG | - | chr2_2:53070096-53070115 | None:intergenic | 40.0% |
| ! | AACTAGAAGGAAAGAGTGCA+TGG | - | chr2_2:53070097-53070116 | None:intergenic | 40.0% |
| AATCTCATTTCTTCACCGCC+GGG | + | chr2_2:53067955-53067974 | Msa0257330:five_prime_UTR | 45.0% | |
| TTTCCGGGGAAACCATAGTT+GGG | - | chr2_2:53068010-53068029 | None:intergenic | 45.0% | |
| ! | TTTTCCGGGGAAACCATAGT+TGG | - | chr2_2:53068011-53068030 | None:intergenic | 45.0% |
| TTTCCCCGGAAAACACCAAT+TGG | + | chr2_2:53068018-53068037 | Msa0257330:CDS | 45.0% | |
| !! | AAGCCAATTGGTGTTTTCCG+GGG | - | chr2_2:53068024-53068043 | None:intergenic | 45.0% |
| CAAAATCAGATACCCGCCAT+TGG | - | chr2_2:53068126-53068145 | None:intergenic | 45.0% | |
| ! | ATCTTCTGTTCTGGACATGG+CGG | + | chr2_2:53068439-53068458 | Msa0257330:intron | 45.0% |
| TCTTGTGTTCGCGTATGTGT+CGG | - | chr2_2:53068511-53068530 | None:intergenic | 45.0% | |
| ACATACGCGAACACAAGACA+CGG | + | chr2_2:53068513-53068532 | Msa0257330:intron | 45.0% | |
| ATGACACAGCATGTCAGTGT+TGG | + | chr2_2:53068577-53068596 | Msa0257330:intron | 45.0% | |
| TGACACAGCATGTCAGTGTT+GGG | + | chr2_2:53068578-53068597 | Msa0257330:intron | 45.0% | |
| ! | CTGAAGTGTCAGTGCTACAT+AGG | + | chr2_2:53068637-53068656 | Msa0257330:intron | 45.0% |
| CAATTTGCACGAGCAGCTTA+AGG | - | chr2_2:53068665-53068684 | None:intergenic | 45.0% | |
| !! | AGCTCTCTAGTGGATTCTGA+TGG | + | chr2_2:53068940-53068959 | Msa0257330:CDS | 45.0% |
| ! | AAGAACCTGGTTCGAAGAAG+AGG | + | chr2_2:53068968-53068987 | Msa0257330:CDS | 45.0% |
| AGTTACCTCTTCTTCGAACC+AGG | - | chr2_2:53068976-53068995 | None:intergenic | 45.0% | |
| GTGGGTGTAGACTGTGTATT+TGG | + | chr2_2:53069406-53069425 | Msa0257330:intron | 45.0% | |
| GGGTGTAGACTGTGTATTTG+GGG | + | chr2_2:53069408-53069427 | Msa0257330:intron | 45.0% | |
| AAGGCCTCCTAAAACAGACA+AGG | + | chr2_2:53069493-53069512 | Msa0257330:CDS | 45.0% | |
| ! | ATTGCCGCCTTGTCTGTTTT+AGG | - | chr2_2:53069503-53069522 | None:intergenic | 45.0% |
| TCTGATTGATGCTGTCCGAA+TGG | + | chr2_2:53069523-53069542 | Msa0257330:CDS | 45.0% | |
| TAAGCCTCTGCTTCTCATCA+CGG | - | chr2_2:53069791-53069810 | None:intergenic | 45.0% | |
| TGATGAGAAGCAGAGGCTTA+AGG | + | chr2_2:53069791-53069810 | Msa0257330:CDS | 45.0% | |
| TAAGGCTGAGAAGGAGAAGT+TGG | + | chr2_2:53069809-53069828 | Msa0257330:CDS | 45.0% | |
| GTGTGTCAAGAAACTGGGTT+GGG | - | chr2_2:53069859-53069878 | None:intergenic | 45.0% | |
| CTTGATGAGCAAATGCAGCA+GGG | - | chr2_2:53069893-53069912 | None:intergenic | 45.0% | |
| !! | GCATTAACTTGTTTGGGGCT+TGG | - | chr2_2:53069917-53069936 | None:intergenic | 45.0% |
| ACGGAGTACATGATCTTGTG+AGG | - | chr2_2:53070000-53070019 | None:intergenic | 45.0% | |
| CAATTTAGGCAACTGGTGGA+CGG | - | chr2_2:53070019-53070038 | None:intergenic | 45.0% | |
| ! | AGGAAAGAGTGCATGGGTAA+AGG | - | chr2_2:53070090-53070109 | None:intergenic | 45.0% |
| !!! | TTTTTAATAATTTCTTTTAA+TGG | - | chr2_2:53067784-53067803 | None:intergenic | 5.0% |
| CAACCCAACTATGGTTTCCC+CGG | + | chr2_2:53068004-53068023 | Msa0257330:exon | 50.0% | |
| AAGGAGCCATCGACAGAAAC+AGG | - | chr2_2:53068074-53068093 | None:intergenic | 50.0% | |
| ! | TCTTCTGTTCTGGACATGGC+GGG | + | chr2_2:53068440-53068459 | Msa0257330:intron | 50.0% |
| ATGTGCTCCTTCCAGCTCTA+AGG | + | chr2_2:53069296-53069315 | Msa0257330:CDS | 50.0% | |
| AGGCATGTCGAGAGAAGTTG+CGG | + | chr2_2:53069316-53069335 | Msa0257330:CDS | 50.0% | |
| ATGTCGAGAGAAGTTGCGGA+GGG | + | chr2_2:53069320-53069339 | Msa0257330:CDS | 50.0% | |
| TTCCTCTCCTCTTTACTCGG+TGG | + | chr2_2:53069387-53069406 | Msa0257330:intron | 50.0% | |
| TCCTCTCCTCTTTACTCGGT+GGG | + | chr2_2:53069388-53069407 | Msa0257330:intron | 50.0% | |
| TCTACACCCACCGAGTAAAG+AGG | - | chr2_2:53069397-53069416 | None:intergenic | 50.0% | |
| !!! | TCTGTTTTAGGAGGCCTTCC+AGG | - | chr2_2:53069491-53069510 | None:intergenic | 50.0% |
| GCCTCCTAAAACAGACAAGG+CGG | + | chr2_2:53069496-53069515 | Msa0257330:CDS | 50.0% | |
| TCCGAATGGTGACACAGTTG+CGG | + | chr2_2:53069537-53069556 | Msa0257330:CDS | 50.0% | |
| AACTCCGTGATGAGAAGCAG+AGG | + | chr2_2:53069784-53069803 | Msa0257330:CDS | 50.0% | |
| GGTGTGTCAAGAAACTGGGT+TGG | - | chr2_2:53069860-53069879 | None:intergenic | 50.0% | |
| ! | GGAGGGTGTGTCAAGAAACT+GGG | - | chr2_2:53069864-53069883 | None:intergenic | 50.0% |
| ! | AGGAGGGTGTGTCAAGAAAC+TGG | - | chr2_2:53069865-53069884 | None:intergenic | 50.0% |
| CCTTGATGAGCAAATGCAGC+AGG | - | chr2_2:53069894-53069913 | None:intergenic | 50.0% | |
| CCTGCTGCATTTGCTCATCA+AGG | + | chr2_2:53069891-53069910 | Msa0257330:CDS | 50.0% | |
| GTTATCCAGGAGTTGCCATG+TGG | + | chr2_2:53069946-53069965 | Msa0257330:CDS | 50.0% | |
| AATTGCCACATGGCAACTCC+TGG | - | chr2_2:53069954-53069973 | None:intergenic | 50.0% | |
| TGGTGGCATGAATTGCCACA+TGG | - | chr2_2:53069964-53069983 | None:intergenic | 50.0% | |
| ! | ATCTTGTGAGGTATCCACGG+CGG | - | chr2_2:53069988-53070007 | None:intergenic | 50.0% |
| CGTCCACCAGTTGCCTAAAT+TGG | + | chr2_2:53070017-53070036 | Msa0257330:exon | 50.0% | |
| GTGCCAATTTAGGCAACTGG+TGG | - | chr2_2:53070023-53070042 | None:intergenic | 50.0% | |
| ! | ACGGTGCCAATTTAGGCAAC+TGG | - | chr2_2:53070026-53070045 | None:intergenic | 50.0% |
| CCATTGGAGAGTTGAGGTGG+GGG | - | chr2_2:53068110-53068129 | None:intergenic | 55.0% | |
| GCCATTGGAGAGTTGAGGTG+GGG | - | chr2_2:53068111-53068130 | None:intergenic | 55.0% | |
| CGCCATTGGAGAGTTGAGGT+GGG | - | chr2_2:53068112-53068131 | None:intergenic | 55.0% | |
| CCACCTCAACTCTCCAATGG+CGG | + | chr2_2:53068110-53068129 | Msa0257330:CDS | 55.0% | |
| CACCTCAACTCTCCAATGGC+GGG | + | chr2_2:53068111-53068130 | Msa0257330:CDS | 55.0% | |
| TACCCGCCATTGGAGAGTTG+AGG | - | chr2_2:53068116-53068135 | None:intergenic | 55.0% | |
| CGACATGCCTTAGAGCTGGA+AGG | - | chr2_2:53069306-53069325 | None:intergenic | 55.0% | |
| CTCTCGACATGCCTTAGAGC+TGG | - | chr2_2:53069310-53069329 | None:intergenic | 55.0% | |
| CATGTCGAGAGAAGTTGCGG+AGG | + | chr2_2:53069319-53069338 | Msa0257330:CDS | 55.0% | |
| GAGAGAAGTTGCGGAGGGAT+AGG | + | chr2_2:53069325-53069344 | Msa0257330:CDS | 55.0% | |
| ACCCACCGAGTAAAGAGGAG+AGG | - | chr2_2:53069392-53069411 | None:intergenic | 55.0% | |
| TTAGGCTCCATCTTGGAGCC+TGG | + | chr2_2:53069470-53069489 | Msa0257330:CDS | 55.0% | |
| !! | GCCGCCTTGTCTGTTTTAGG+AGG | - | chr2_2:53069500-53069519 | None:intergenic | 55.0% |
| CCCGCAACTGTGTCACCATT+CGG | - | chr2_2:53069541-53069560 | None:intergenic | 55.0% | |
| CCGAATGGTGACACAGTTGC+GGG | + | chr2_2:53069538-53069557 | Msa0257330:CDS | 55.0% | |
| CGAATGGTGACACAGTTGCG+GGG | + | chr2_2:53069539-53069558 | Msa0257330:CDS | 55.0% | |
| GCAGAGGCTTAAGGCTGAGA+AGG | + | chr2_2:53069800-53069819 | Msa0257330:CDS | 55.0% | |
| GAAGGAGAAGTTGGAGCAGC+AGG | + | chr2_2:53069818-53069837 | Msa0257330:CDS | 55.0% | |
| ATGCAGCAGGGATTGCAGGA+GGG | - | chr2_2:53069881-53069900 | None:intergenic | 55.0% | |
| AATGCAGCAGGGATTGCAGG+AGG | - | chr2_2:53069882-53069901 | None:intergenic | 55.0% | |
| GCAAATGCAGCAGGGATTGC+AGG | - | chr2_2:53069885-53069904 | None:intergenic | 55.0% | |
| ATGGCTCCTTCGCCTTCACG+TGG | + | chr2_2:53068084-53068103 | Msa0257330:CDS | 60.0% | |
| CCCCCACCTCAACTCTCCAA+TGG | + | chr2_2:53068107-53068126 | Msa0257330:CDS | 60.0% | |
| CCGCCATTGGAGAGTTGAGG+TGG | - | chr2_2:53068113-53068132 | None:intergenic | 60.0% | |
| CGATAGCAGGCTCCGTTCAG+TGG | + | chr2_2:53069169-53069188 | Msa0257330:intron | 60.0% | |
| GCTCCATCTTGGAGCCTGGA+AGG | + | chr2_2:53069474-53069493 | Msa0257330:CDS | 60.0% | |
| AGGCCTTCCAGGCTCCAAGA+TGG | - | chr2_2:53069480-53069499 | None:intergenic | 60.0% | |
| TTGAGGTGGGGGCCACGTGA+AGG | - | chr2_2:53068099-53068118 | None:intergenic | 65.0% | |
| ATTCATGCCACCAGCCGCCG+TGG | + | chr2_2:53069971-53069990 | Msa0257330:CDS | 65.0% | |
| ! | TGTGAGGTATCCACGGCGGC+TGG | - | chr2_2:53069984-53070003 | None:intergenic | 65.0% |
| TGGGGGCCACGTGAAGGCGA+AGG | - | chr2_2:53068093-53068112 | None:intergenic | 70.0% | |
| ! | GAGGTATCCACGGCGGCTGG+TGG | - | chr2_2:53069981-53070000 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 53067742 | 53070409 | 53067742 | ID=Msa0257330;Name=Msa0257330 |
| chr2_2 | mRNA | 53067742 | 53070409 | 53067742 | ID=Msa0257330-mRNA-1;Parent=Msa0257330;Name=Msa0257330-mRNA-1;_AED=0.02;_eAED=0.02;_QI=272|1|1|1|1|1|5|375|229 |
| chr2_2 | exon | 53067742 | 53068132 | 53067742 | ID=Msa0257330-mRNA-1:exon:15877;Parent=Msa0257330-mRNA-1 |
| chr2_2 | exon | 53068924 | 53068989 | 53068924 | ID=Msa0257330-mRNA-1:exon:15878;Parent=Msa0257330-mRNA-1 |
| chr2_2 | exon | 53069281 | 53069358 | 53069281 | ID=Msa0257330-mRNA-1:exon:15879;Parent=Msa0257330-mRNA-1 |
| chr2_2 | exon | 53069460 | 53069622 | 53069460 | ID=Msa0257330-mRNA-1:exon:15880;Parent=Msa0257330-mRNA-1 |
| chr2_2 | exon | 53069771 | 53070409 | 53069771 | ID=Msa0257330-mRNA-1:exon:15881;Parent=Msa0257330-mRNA-1 |
| chr2_2 | five_prime_UTR | 53067742 | 53068013 | 53067742 | ID=Msa0257330-mRNA-1:five_prime_utr;Parent=Msa0257330-mRNA-1 |
| chr2_2 | CDS | 53068014 | 53068132 | 53068014 | ID=Msa0257330-mRNA-1:cds;Parent=Msa0257330-mRNA-1 |
| chr2_2 | CDS | 53068924 | 53068989 | 53068924 | ID=Msa0257330-mRNA-1:cds;Parent=Msa0257330-mRNA-1 |
| chr2_2 | CDS | 53069281 | 53069358 | 53069281 | ID=Msa0257330-mRNA-1:cds;Parent=Msa0257330-mRNA-1 |
| chr2_2 | CDS | 53069460 | 53069622 | 53069460 | ID=Msa0257330-mRNA-1:cds;Parent=Msa0257330-mRNA-1 |
| chr2_2 | CDS | 53069771 | 53070034 | 53069771 | ID=Msa0257330-mRNA-1:cds;Parent=Msa0257330-mRNA-1 |
| chr2_2 | three_prime_UTR | 53070035 | 53070409 | 53070035 | ID=Msa0257330-mRNA-1:three_prime_utr;Parent=Msa0257330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
