AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0650050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0650050 MtrunA17_Chr4g0042041 98.312 237 4 0 1 237 1 237 2.58e-175 481
Msa0650050 MtrunA17_Chr2g0319301 77.824 239 42 5 1 237 1 230 6.53e-125 353
Msa0650050 MtrunA17_Chr2g0323031 49.805 257 93 6 9 237 12 260 1.25e-74 227
Msa0650050 MtrunA17_Chr1g0167821 44.800 250 110 6 5 237 8 246 4.70e-61 192
Msa0650050 MtrunA17_Chr4g0038511 51.515 99 47 1 76 174 6 103 2.63e-23 95.1
Msa0650050 MtrunA17_Chr1g0161461 36.913 149 78 4 35 174 33 174 1.68e-19 85.9
Msa0650050 MtrunA17_Chr4g0060591 31.852 135 74 3 56 182 17 141 3.12e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0650050 AT5G54680.1 72.385 239 59 3 1 237 1 234 2.97e-119 339
Msa0650050 AT1G51070.1 60.166 241 77 4 1 237 1 226 2.97e-96 281
Msa0650050 AT1G51070.2 67.010 194 55 2 48 237 104 292 1.15e-86 259
Msa0650050 AT3G23210.2 54.348 184 71 5 59 237 116 291 3.99e-55 178
Msa0650050 AT3G23210.1 54.348 184 71 5 59 237 145 320 8.06e-55 178
Msa0650050 AT4G14410.2 52.459 183 76 4 57 237 104 277 8.30e-55 177
Msa0650050 AT4G14410.3 52.459 183 76 4 57 237 104 277 8.30e-55 177
Msa0650050 AT4G14410.1 52.459 183 76 4 57 237 110 283 1.01e-54 177
Msa0650050 AT3G19860.1 35.393 178 80 4 76 224 5 176 4.16e-23 95.1
Msa0650050 AT3G19860.2 35.165 182 83 4 76 228 58 233 8.94e-23 95.1
Msa0650050 AT3G19860.3 35.393 178 80 4 76 224 36 207 9.91e-23 94.7
Msa0650050 AT4G36060.4 36.054 147 84 4 65 207 15 155 9.16e-19 83.2
Msa0650050 AT4G36060.2 36.054 147 84 4 65 207 15 155 1.25e-18 82.8
Msa0650050 AT4G36060.3 36.054 147 84 4 65 207 33 173 2.12e-18 82.4
Msa0650050 AT4G36060.1 36.667 150 82 4 65 210 33 173 2.80e-18 82.0

Find 151 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTGGCATCTTTCAACTTT+TGG 0.148107 4_3:+56803909 None:intergenic
AGAAAAGATTAAAGAGTTAA+AGG 0.172284 4_3:-56803876 Msa0650050:intron
AAAGTTGGTAAGTTTATAAA+AGG 0.192749 4_3:-56807011 Msa0650050:five_prime_UTR
GCTGGCTCTGTGCAATTCTT+TGG 0.196795 4_3:-56803416 Msa0650050:three_prime_UTR
TAATTAATTAATGTATAAAA+TGG 0.226417 4_3:+56806830 None:intergenic
CAGTGGCTTCCGTTTGTATT+TGG 0.227327 4_3:-56803318 Msa0650050:three_prime_UTR
GATACAATCTTGAGCTAAAA+TGG 0.237105 4_3:+56803389 None:intergenic
ATTAATGTATAAAATGGTTC+TGG 0.241509 4_3:+56806836 None:intergenic
GAATACTTCTGAATTTATTC+TGG 0.257512 4_3:-56803290 Msa0650050:three_prime_UTR
AACTCCTGGATAACTAATAA+AGG 0.263274 4_3:+56803514 None:intergenic
CTGGCTCTGTGCAATTCTTT+GGG 0.297116 4_3:-56803415 Msa0650050:three_prime_UTR
GATGGCAGCCTTGTCGGTTT+TGG 0.311125 4_3:+56803976 None:intergenic
TTGTTAGTATGTATTCTAAC+TGG 0.331198 4_3:-56803344 Msa0650050:three_prime_UTR
CCAATTTGTTGCCATGGGCT+TGG 0.333737 4_3:+56803540 None:intergenic
GAGAATAGAAAGAATGAGAT+TGG 0.335091 4_3:+56806912 None:intergenic
ATTATTTAAGTATTTCATTC+AGG 0.338216 4_3:+56802921 None:intergenic
CCAAGCCCATGGCAACAAAT+TGG 0.353392 4_3:-56803540 Msa0650050:CDS
AGAAAAGAAAAGAAAAGAAA+AGG 0.355227 4_3:+56806863 None:intergenic
TCGGTTGCACGAATGAGAAT+TGG 0.358451 4_3:+56806703 None:intergenic
AAATACTTAAATAATACATT+TGG 0.366035 4_3:-56802913 Msa0650050:three_prime_UTR
CAACTTCTCCCGACATGCTT+TGG 0.380918 4_3:+56804139 None:intergenic
TTCCTTCCTCCGCCTTCACC+TGG 0.380977 4_3:-56806530 Msa0650050:CDS
ACCACAGTGCTCATGGTGCT+TGG 0.383975 4_3:-56802969 Msa0650050:three_prime_UTR
GAAAAGAAAAGAAAAGAAAA+GGG 0.388463 4_3:+56806864 None:intergenic
CATATGGTATGTTGTTGATA+TGG 0.388909 4_3:-56803025 Msa0650050:three_prime_UTR
TCAACCTTGCTTCCAATGTC+AGG 0.389116 4_3:-56806491 Msa0650050:intron
TCCGAATGGTGACACAGTTA+AGG 0.403203 4_3:-56803940 Msa0650050:CDS
TGAGAAGAAAGGAGCGAAGA+AGG 0.407623 4_3:+56806730 None:intergenic
GCTGAAATTGATGGCTCGTT+AGG 0.408473 4_3:-56804907 Msa0650050:CDS
CTGAGTGGGCCAGGTGAAGG+CGG 0.415799 4_3:+56806521 None:intergenic
GTACCCTTTATTAGTTATCC+AGG 0.420242 4_3:-56803518 Msa0650050:CDS
CTGAAATTGATGGCTCGTTA+GGG 0.421366 4_3:-56804906 Msa0650050:CDS
GGGCTGAGTGGGCCAGGTGA+AGG 0.425472 4_3:+56806518 None:intergenic
CAAGGCAGAGAAAGAGAAGT+TGG 0.426792 4_3:-56803645 Msa0650050:CDS
TGCCGCAGGGAGTGCGGTGG+CGG 0.429047 4_3:+56803577 None:intergenic
CGGTTGCACGAATGAGAATT+GGG 0.429378 4_3:+56806704 None:intergenic
TTTCCCGGGAAAACACGAAT+TGG 0.429457 4_3:-56806608 Msa0650050:CDS
ACGAATTGGATTAACGATTA+CGG 0.430120 4_3:-56806594 Msa0650050:CDS
GCTGCTAGTGCTGAAATTGA+TGG 0.434631 4_3:-56804916 Msa0650050:intron
CGTCCTCCAGTTGCCTAAGC+TGG 0.434808 4_3:-56803434 Msa0650050:exon
TACTAGCTCCAAAGCATGTC+GGG 0.441749 4_3:-56804147 Msa0650050:CDS
TTAATGTATAAAATGGTTCT+GGG 0.444036 4_3:+56806837 None:intergenic
CCACAGTGCTCATGGTGCTT+GGG 0.445056 4_3:-56802968 Msa0650050:three_prime_UTR
CCCTTAACTGTGTCACCATT+CGG 0.446843 4_3:+56803939 None:intergenic
TCTCGGTACATATCTGAATT+CGG 0.450958 4_3:+56803065 None:intergenic
TAGGGTACGAAATGGTTTCC+CGG 0.451050 4_3:-56806623 Msa0650050:exon
CCGAATGGTGACACAGTTAA+GGG 0.454973 4_3:-56803939 Msa0650050:CDS
AATTGCCACATTGCAACTCC+TGG 0.456516 4_3:+56803500 None:intergenic
CTAACAAAGCAAGAAGGTAT+TGG 0.457115 4_3:+56803360 None:intergenic
AATCAGGATGGCAGCCTTGT+CGG 0.459158 4_3:+56803970 None:intergenic
ACTCCTGGATAACTAATAAA+GGG 0.460680 4_3:+56803515 None:intergenic
CCATTCGGACAGCATCAATC+AGG 0.463542 4_3:+56803954 None:intergenic
CTACCACAAATCAACTGTTT+CGG 0.463884 4_3:+56806975 None:intergenic
CCACCGAAACAGTTGATTTG+TGG 0.464136 4_3:-56806978 Msa0650050:five_prime_UTR
AGGAAGAGCGAAGGTTGAAT+CGG 0.467851 4_3:+56806548 None:intergenic
TCGTACCCTAGCTACCTTCC+CGG 0.469224 4_3:+56806636 None:intergenic
AAGTTGGTAAGTTTATAAAA+GGG 0.469931 4_3:-56807010 Msa0650050:five_prime_UTR
ACAGAGCCAGCTTAGGCAAC+TGG 0.474028 4_3:+56803428 None:intergenic
ATTCGGTTCGTGTGAGTACA+AGG 0.477260 4_3:+56803082 None:intergenic
TCTGACAGTCTCAAAGAGTC+TGG 0.477676 4_3:-56804880 Msa0650050:CDS
TATTGAACTAGGCTCCATCT+TGG 0.477914 4_3:-56804014 Msa0650050:CDS
CCTTGTGCAGCAAATGCCGC+AGG 0.484770 4_3:+56803563 None:intergenic
CTAGGCTCCATCTTGGAGCC+TGG 0.485022 4_3:-56804007 Msa0650050:CDS
AGAATAGAAAGAATGAGATT+GGG 0.485836 4_3:+56806913 None:intergenic
CAAATACAAACGGAAGCCAC+TGG 0.486092 4_3:+56803319 None:intergenic
GACATTGGAAGCAAGGTTGA+AGG 0.488201 4_3:+56806494 None:intergenic
TACAAATGTTTAAACAATCA+AGG 0.489822 4_3:-56803157 Msa0650050:three_prime_UTR
GGCCAGGTGAAGGCGGAGGA+AGG 0.490836 4_3:+56806528 None:intergenic
AGGGTACCAATTTGTTGCCA+TGG 0.491389 4_3:+56803534 None:intergenic
AGCAAGAAGGTATTGGTGAT+AGG 0.493895 4_3:+56803367 None:intergenic
GGGTACCAATTTGTTGCCAT+GGG 0.498672 4_3:+56803535 None:intergenic
TTCGCTGTCACGCGCCGGGA+AGG 0.500884 4_3:-56806650 Msa0650050:five_prime_UTR
GCGAAGGTTGAATCGGGAAC+GGG 0.501622 4_3:+56806555 None:intergenic
CACGCGCCGGGAAGGTAGCT+AGG 0.504584 4_3:-56806642 Msa0650050:five_prime_UTR
GCGATTCGCTGTCACGCGCC+GGG 0.505948 4_3:-56806654 Msa0650050:five_prime_UTR
AACAATCAAGGAATGAAAAG+TGG 0.506211 4_3:-56803145 Msa0650050:three_prime_UTR
GAAAAGAAAAGAAAAGGGTG+GGG 0.506703 4_3:+56806869 None:intergenic
GATATTAAACCTCCACGCTC+TGG 0.514052 4_3:-56802992 Msa0650050:three_prime_UTR
GCAGGGAGTGCGGTGGCGGT+AGG 0.514410 4_3:+56803581 None:intergenic
ACATTGGAAGCAAGGTTGAA+GGG 0.515771 4_3:+56806495 None:intergenic
AAGAAAAGAAAAGAAAAGGG+TGG 0.516770 4_3:+56806867 None:intergenic
GTGTGGTGTTGAAGTACATA+TGG 0.517533 4_3:-56803041 Msa0650050:three_prime_UTR
AGCGATTCGCTGTCACGCGC+CGG 0.521107 4_3:-56806655 Msa0650050:five_prime_UTR
AGAAAAGAAAAGAAAAGGGT+GGG 0.522591 4_3:+56806868 None:intergenic
CTTAAATAATACATTTGGAT+CGG 0.522952 4_3:-56802908 Msa0650050:three_prime_UTR
GCTCCATCTTGGAGCCTGGA+AGG 0.524851 4_3:-56804003 Msa0650050:CDS
TGGATCGGACGTTGCACCAA+GGG 0.529854 4_3:-56802893 Msa0650050:three_prime_UTR
ATTGTTAGGTTTATTGAACT+AGG 0.530194 4_3:-56804025 Msa0650050:intron
GCTCTGGACCACAGTGCTCA+TGG 0.532824 4_3:-56802976 Msa0650050:three_prime_UTR
ATTCATAAGCCAAATACAAA+CGG 0.533567 4_3:+56803309 None:intergenic
GGAAGAGCGAAGGTTGAATC+GGG 0.533818 4_3:+56806549 None:intergenic
CCTGCGGCATTTGCTGCACA+AGG 0.540694 4_3:-56803563 Msa0650050:CDS
AAGTAAAGGCACTATAAAGT+TGG 0.542959 4_3:-56807026 Msa0650050:five_prime_UTR
ATTTATGCCACCTGCTGCAG+TGG 0.547258 4_3:-56803480 Msa0650050:CDS
TGTGAGGTATCCACTGCAGC+AGG 0.547849 4_3:+56803470 None:intergenic
AAGGTAGCTAGGGTACGAAA+TGG 0.548343 4_3:-56806631 Msa0650050:exon
ATCAAGGAATGAAAAGTGGA+AGG 0.551396 4_3:-56803141 Msa0650050:three_prime_UTR
AGGGTACGAAATGGTTTCCC+GGG 0.553844 4_3:-56806622 Msa0650050:exon
AGCAAATGCCGCAGGGAGTG+CGG 0.555070 4_3:+56803571 None:intergenic
AAAGTTGAAAGATGCCAACT+CGG 0.556876 4_3:-56803906 Msa0650050:CDS
GGCGGAGGAAGGAAGAGCGA+AGG 0.557011 4_3:+56806539 None:intergenic
TACTTCAACACCACACATCT+CGG 0.557939 4_3:+56803048 None:intergenic
AGTGGGCCAGGTGAAGGCGG+AGG 0.558235 4_3:+56806524 None:intergenic
CTACTAGCTCCAAAGCATGT+CGG 0.561189 4_3:-56804148 Msa0650050:CDS
GAATTGGGAATTGAGAAGAA+AGG 0.565106 4_3:+56806719 None:intergenic
CATTGGAAGCAAGGTTGAAG+GGG 0.566545 4_3:+56806496 None:intergenic
GAATTGCACAGAGCCAGCTT+AGG 0.566848 4_3:+56803421 None:intergenic
GTGGCGGTAGGCAAGAAACT+AGG 0.572355 4_3:+56803593 None:intergenic
AGGCCTTCCAGGCTCCAAGA+TGG 0.576941 4_3:+56804000 None:intergenic
GCTGCACAAGGCCAAGCCCA+TGG 0.577267 4_3:-56803551 Msa0650050:CDS
CCACAAATCAACTGTTTCGG+TGG 0.581810 4_3:+56806978 None:intergenic
AGCGAAGGTTGAATCGGGAA+CGG 0.583174 4_3:+56806554 None:intergenic
AAGAGTCTGGTTCAAAGAAG+AGG 0.585185 4_3:-56804867 Msa0650050:intron
AAGCAGACTCAATTGACCCT+TGG 0.588041 4_3:+56802877 None:intergenic
GAGCACTGTGGTCCAGAGCG+TGG 0.589753 4_3:+56802980 None:intergenic
AAAAGAAAAGAAAAGGGTGG+GGG 0.590639 4_3:+56806870 None:intergenic
TGCTGCAGTGGATACCTCAC+AGG 0.591418 4_3:-56803468 Msa0650050:CDS
ATTGGAAGCAAGGTTGAAGG+GGG 0.596778 4_3:+56806497 None:intergenic
TTTAAGTATTTCATTCAGGT+AGG 0.597087 4_3:+56802925 None:intergenic
AAGTTGAAAGATGCCAACTC+GGG 0.605070 4_3:-56803905 Msa0650050:CDS
CAGACCTGACATTGGAAGCA+AGG 0.608712 4_3:+56806487 None:intergenic
AAATACAAACGGAAGCCACT+GGG 0.608993 4_3:+56803320 None:intergenic
TACATACTAACAAAGCAAGA+AGG 0.610881 4_3:+56803354 None:intergenic
CTTGTGCAGCAAATGCCGCA+GGG 0.618158 4_3:+56803564 None:intergenic
AATGAGTACAGACCTGACAT+TGG 0.621004 4_3:+56806479 None:intergenic
ACGCGCCGGGAAGGTAGCTA+GGG 0.621763 4_3:-56806641 Msa0650050:five_prime_UTR
TGAAATTGATGGCTCGTTAG+GGG 0.622534 4_3:-56804905 Msa0650050:CDS
AGTTTATAAAAGGGTAAACA+AGG 0.623952 4_3:-56807001 Msa0650050:five_prime_UTR
TCAAGGAATGAAAAGTGGAA+GGG 0.625572 4_3:-56803140 Msa0650050:three_prime_UTR
CCTGATTGATGCTGTCCGAA+TGG 0.625819 4_3:-56803954 Msa0650050:CDS
AAATGCCGCAGGGAGTGCGG+TGG 0.628969 4_3:+56803574 None:intergenic
TACCGCCACCGCACTCCCTG+CGG 0.632065 4_3:-56803579 Msa0650050:CDS
AAGGCCTGCCAAAACCGACA+AGG 0.632388 4_3:-56803984 Msa0650050:CDS
TGACGAGAAACAGAGGCTCA+AGG 0.635039 4_3:-56803663 Msa0650050:CDS
CGAATGGTGACACAGTTAAG+GGG 0.650749 4_3:-56803938 Msa0650050:CDS
GAGGTATCCACTGCAGCAGG+TGG 0.651341 4_3:+56803473 None:intergenic
AACTTCGTGACGAGAAACAG+AGG 0.668282 4_3:-56803670 Msa0650050:CDS
CACTGTGGTCCAGAGCGTGG+AGG 0.668517 4_3:+56802983 None:intergenic
TCGGACAGCATCAATCAGGA+TGG 0.668544 4_3:+56803958 None:intergenic
TTGGATCGGACGTTGCACCA+AGG 0.671315 4_3:-56802894 Msa0650050:three_prime_UTR
TTCGGTTCGTGTGAGTACAA+GGG 0.674407 4_3:+56803083 None:intergenic
GTGCTTGGGTCACTATTGTG+AGG 0.676661 4_3:-56802954 Msa0650050:three_prime_UTR
GTTATCCAGGAGTTGCAATG+TGG 0.686227 4_3:-56803505 Msa0650050:CDS
AGGCAAACGATAATCTAGTG+AGG 0.695421 4_3:-56803224 Msa0650050:three_prime_UTR
GAGCCAGCTTAGGCAACTGG+AGG 0.695906 4_3:+56803431 None:intergenic
GCGGTAGGCAAGAAACTAGG+TGG 0.707300 4_3:+56803596 None:intergenic
TGTATTCTAACTGGACCCAG+TGG 0.707527 4_3:-56803335 Msa0650050:three_prime_UTR
TTGGAAGCAAGGTTGAAGGG+GGG 0.709273 4_3:+56806498 None:intergenic
CAGATATGTACCGAGATGTG+TGG 0.730683 4_3:-56803058 Msa0650050:three_prime_UTR
ACGAAGTACATGATCCTGTG+AGG 0.733239 4_3:+56803454 None:intergenic
CCCAAGCACCATGAGCACTG+TGG 0.763050 4_3:+56802968 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATGAAAATTATTTCAA+TGG - chr4_3:56803911-56803930 Msa0650050:CDS 10.0%
!! TTTAAGAAATAAAAATTGAA+GGG + chr4_3:56806158-56806177 None:intergenic 10.0%
!!! TTTTAAGAAATAAAAATTGA+AGG + chr4_3:56806159-56806178 None:intergenic 10.0%
!! AAATACTTAAATAATACATT+TGG - chr4_3:56807015-56807034 Msa0650050:five_prime_UTR 10.0%
!! ATAAATCTCAAATTATCATA+GGG + chr4_3:56803605-56803624 None:intergenic 15.0%
!! TATAAATCTCAAATTATCAT+AGG + chr4_3:56803606-56803625 None:intergenic 15.0%
!!! ATCATTACTCTTATTTAAAA+TGG + chr4_3:56804361-56804380 None:intergenic 15.0%
!! AATAAGAAATGAGAAAAATA+AGG + chr4_3:56804420-56804439 None:intergenic 15.0%
!!! TTATTTTTCTCATTTCTTAT+TGG - chr4_3:56804419-56804438 Msa0650050:intron 15.0%
!!! TATTTTTCTTTACCTAAAAA+AGG - chr4_3:56805155-56805174 Msa0650050:intron 15.0%
!! GTATTAAAAAACAAATTTCT+AGG - chr4_3:56806223-56806242 Msa0650050:intron 15.0%
!! ATTATTTAAGTATTTCATTC+AGG + chr4_3:56807010-56807029 None:intergenic 15.0%
!!! AAAGTTGGTAAGTTTATAAA+AGG - chr4_3:56802917-56802936 Msa0650050:three_prime_UTR 20.0%
!!! AAGTTGGTAAGTTTATAAAA+GGG - chr4_3:56802918-56802937 Msa0650050:three_prime_UTR 20.0%
!! GAAAAGAAAAGAAAAGAAAA+GGG + chr4_3:56803067-56803086 None:intergenic 20.0%
!! AGAAAAGAAAAGAAAAGAAA+AGG + chr4_3:56803068-56803087 None:intergenic 20.0%
!! TTAATGTATAAAATGGTTCT+GGG + chr4_3:56803094-56803113 None:intergenic 20.0%
!! ATTAATGTATAAAATGGTTC+TGG + chr4_3:56803095-56803114 None:intergenic 20.0%
!! TAAAACCCTAATTATGAAAA+GGG + chr4_3:56803480-56803499 None:intergenic 20.0%
!! TTAAAACCCTAATTATGAAA+AGG + chr4_3:56803481-56803500 None:intergenic 20.0%
!!! TTTCATAATTAGGGTTTTAA+TGG - chr4_3:56803481-56803500 Msa0650050:CDS 20.0%
!!! ATTTTTTGTTTCTTACTTCA+TGG - chr4_3:56803543-56803562 Msa0650050:CDS 20.0%
!!! TTTTTTGTTTCTTACTTCAT+GGG - chr4_3:56803544-56803563 Msa0650050:CDS 20.0%
!!! TGTTTTCATAACAGTTATAT+AGG + chr4_3:56803832-56803851 None:intergenic 20.0%
!! AAAATTATTTCAATGGAAGT+TGG - chr4_3:56803918-56803937 Msa0650050:CDS 20.0%
!! TAGGTAAAACTATTTAGAAA+AGG + chr4_3:56804096-56804115 None:intergenic 20.0%
!!! AAATAGTTTTACCTAAAACT+TGG - chr4_3:56804101-56804120 Msa0650050:intron 20.0%
!! ATTTGCATTATGGTATTTAT+AGG - chr4_3:56804910-56804929 Msa0650050:CDS 20.0%
!!! AATTGTTTAGTTCAATGAAA+GGG + chr4_3:56805110-56805129 None:intergenic 20.0%
!!! AAATTGTTTAGTTCAATGAA+AGG + chr4_3:56805111-56805130 None:intergenic 20.0%
!! AGAATAAAGATAACATGTAT+AGG - chr4_3:56805194-56805213 Msa0650050:intron 20.0%
!! CAAGTAAAACAAAACATATT+GGG + chr4_3:56805268-56805287 None:intergenic 20.0%
!! ACAAGTAAAACAAAACATAT+TGG + chr4_3:56805269-56805288 None:intergenic 20.0%
!! AATCATTATTGTAGTATACA+TGG + chr4_3:56805352-56805371 None:intergenic 20.0%
!! ATGTATACTACAATAATGAT+TGG - chr4_3:56805351-56805370 Msa0650050:intron 20.0%
!! AATTGCACTAATAATTAAGT+TGG + chr4_3:56805492-56805511 None:intergenic 20.0%
!! AAACTACAAGGAAAAATTAA+TGG + chr4_3:56805586-56805605 None:intergenic 20.0%
!!! TTTTTCCTTGTAGTTTTTTT+AGG - chr4_3:56805590-56805609 Msa0650050:intron 20.0%
!! CTAACAATGTTCATTATATT+AGG + chr4_3:56805891-56805910 None:intergenic 20.0%
!! CTAATATAATGAACATTGTT+AGG - chr4_3:56805889-56805908 Msa0650050:intron 20.0%
!! AGAAAAGATTAAAGAGTTAA+AGG - chr4_3:56806052-56806071 Msa0650050:intron 20.0%
!!! CGATAATTTTTTCTTGTTTT+TGG - chr4_3:56806731-56806750 Msa0650050:five_prime_UTR 20.0%
!! TACAAATGTTTAAACAATCA+AGG - chr4_3:56806771-56806790 Msa0650050:five_prime_UTR 20.0%
!! CTTAAATAATACATTTGGAT+CGG - chr4_3:56807020-56807039 Msa0650050:five_prime_UTR 20.0%
! AGTTTATAAAAGGGTAAACA+AGG - chr4_3:56802927-56802946 Msa0650050:three_prime_UTR 25.0%
! AGAATAGAAAGAATGAGATT+GGG + chr4_3:56803018-56803037 None:intergenic 25.0%
!!! TGATTTTGATTTTGAGAATG+AGG + chr4_3:56803252-56803271 None:intergenic 25.0%
! AAAACCCTAATTATGAAAAG+GGG + chr4_3:56803479-56803498 None:intergenic 25.0%
! AAATAATCAAACCATGCAAA+TGG + chr4_3:56803726-56803745 None:intergenic 25.0%
! TACAAGTAAGTTTCAACAAT+AGG + chr4_3:56803959-56803978 None:intergenic 25.0%
! TGATGCTTAGAATCTTTAAT+CGG - chr4_3:56804005-56804024 Msa0650050:CDS 25.0%
! AATAGAGGATATTTGAATTC+AGG - chr4_3:56804040-56804059 Msa0650050:intron 25.0%
! ATAGAGGATATTTGAATTCA+GGG - chr4_3:56804041-56804060 Msa0650050:intron 25.0%
!! TTAGAAAAGGTTTTTCTTGA+TGG + chr4_3:56804083-56804102 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr4_3:56804432-56804451 Msa0650050:intron 25.0%
!! CAAATATACAAGTTTTGCAA+AGG + chr4_3:56804610-56804629 None:intergenic 25.0%
! AAACTTGTATATTTGTGATG+AGG - chr4_3:56804615-56804634 Msa0650050:intron 25.0%
! ACTACACTACTAAAAAATCT+GGG + chr4_3:56804700-56804719 None:intergenic 25.0%
! TATCCTCTTGATATAAAACA+TGG + chr4_3:56804877-56804896 None:intergenic 25.0%
!! ATGTTTTATATCAAGAGGAT+AGG - chr4_3:56804876-56804895 Msa0650050:CDS 25.0%
!! TGTTTTATATCAAGAGGATA+GGG - chr4_3:56804877-56804896 Msa0650050:CDS 25.0%
! GATTAGAACAATTTGCATTA+TGG - chr4_3:56804900-56804919 Msa0650050:CDS 25.0%
! TGACATGTAAATTCATATAG+AGG + chr4_3:56804942-56804961 None:intergenic 25.0%
! ATCTCCTAAAGATTTAAACA+GGG + chr4_3:56805305-56805324 None:intergenic 25.0%
! AATCTCCTAAAGATTTAAAC+AGG + chr4_3:56805306-56805325 None:intergenic 25.0%
! TAGTATACATGGAAAGAAAA+CGG + chr4_3:56805341-56805360 None:intergenic 25.0%
! ATTGTTAGGTTTATTGAACT+AGG - chr4_3:56805903-56805922 Msa0650050:intron 25.0%
! GTGAAGTCTCAATTTATATT+CGG - chr4_3:56806074-56806093 Msa0650050:intron 25.0%
! TGAAGTCTCAATTTATATTC+GGG - chr4_3:56806075-56806094 Msa0650050:intron 25.0%
! TTTCTTTGTAAATTTGCATG+TGG - chr4_3:56806102-56806121 Msa0650050:intron 25.0%
!! TGAGTTTTTCATTCAACAAT+AGG + chr4_3:56806194-56806213 None:intergenic 25.0%
! TTGTTAGTATGTATTCTAAC+TGG - chr4_3:56806584-56806603 Msa0650050:CDS 25.0%
! ATTCATAAGCCAAATACAAA+CGG + chr4_3:56806622-56806641 None:intergenic 25.0%
! GAATACTTCTGAATTTATTC+TGG - chr4_3:56806638-56806657 Msa0650050:five_prime_UTR 25.0%
! TTTAAGTATTTCATTCAGGT+AGG + chr4_3:56807006-56807025 None:intergenic 25.0%
!! AAGTAAAGGCACTATAAAGT+TGG - chr4_3:56802902-56802921 Msa0650050:three_prime_UTR 30.0%
GAGAATAGAAAGAATGAGAT+TGG + chr4_3:56803019-56803038 None:intergenic 30.0%
AGAAAAGAAAAGAAAAGGGT+GGG + chr4_3:56803063-56803082 None:intergenic 30.0%
AAGAAAAGAAAAGAAAAGGG+TGG + chr4_3:56803064-56803083 None:intergenic 30.0%
!! TTGATTTTGAGAATGAGGTT+CGG + chr4_3:56803247-56803266 None:intergenic 30.0%
ACGAATTGGATTAACGATTA+CGG - chr4_3:56803334-56803353 Msa0650050:three_prime_UTR 30.0%
AAACCCTAATTATGAAAAGG+GGG + chr4_3:56803478-56803497 None:intergenic 30.0%
!!! CTAAGTTCTCTACTAGTTTT+AGG - chr4_3:56803699-56803718 Msa0650050:intron 30.0%
AGAATCTTTAATCGGAAAAG+CGG - chr4_3:56804013-56804032 Msa0650050:CDS 30.0%
TATAGATCATCTGATCCATT+GGG + chr4_3:56804139-56804158 None:intergenic 30.0%
ATATAGATCATCTGATCCAT+TGG + chr4_3:56804140-56804159 None:intergenic 30.0%
CTATCTCACTAGATAGAATT+GGG + chr4_3:56804166-56804185 None:intergenic 30.0%
CAATTCTATCTAGTGAGATA+GGG - chr4_3:56804165-56804184 Msa0650050:CDS 30.0%
AATTCTATCTAGTGAGATAG+GGG - chr4_3:56804166-56804185 Msa0650050:CDS 30.0%
!!! GTTCCTTGACAATGTTTTTT+AGG - chr4_3:56804302-56804321 Msa0650050:intron 30.0%
AAAACAATGGAGAGAGAAAA+AGG - chr4_3:56804445-56804464 Msa0650050:intron 30.0%
!!! AACCACTTTTTGACAACTTT+TGG + chr4_3:56804517-56804536 None:intergenic 30.0%
TTGCACAAACAAAACAAACT+AGG + chr4_3:56804641-56804660 None:intergenic 30.0%
!!! AGTTTGTTTTGTTTGTGCAA+TGG - chr4_3:56804641-56804660 Msa0650050:intron 30.0%
CACTACACTACTAAAAAATC+TGG + chr4_3:56804701-56804720 None:intergenic 30.0%
!!! CAGATTTTTTAGTAGTGTAG+TGG - chr4_3:56804699-56804718 Msa0650050:intron 30.0%
! GTTTTATATCAAGAGGATAG+GGG - chr4_3:56804878-56804897 Msa0650050:CDS 30.0%
TACTCCCTGTTTAAATCTTT+AGG - chr4_3:56805298-56805317 Msa0650050:intron 30.0%
ACTCCAGAAATCATATCATA+GGG - chr4_3:56805695-56805714 Msa0650050:intron 30.0%
TCTTGTTAATTTCTTGTTGC+AGG - chr4_3:56805735-56805754 Msa0650050:intron 30.0%
CTTGTTAATTTCTTGTTGCA+GGG - chr4_3:56805736-56805755 Msa0650050:intron 30.0%
ACTCCTGGATAACTAATAAA+GGG + chr4_3:56806416-56806435 None:intergenic 30.0%
AACTCCTGGATAACTAATAA+AGG + chr4_3:56806417-56806436 None:intergenic 30.0%
GATACAATCTTGAGCTAAAA+TGG + chr4_3:56806542-56806561 None:intergenic 30.0%
TACATACTAACAAAGCAAGA+AGG + chr4_3:56806577-56806596 None:intergenic 30.0%
AACAATCAAGGAATGAAAAG+TGG - chr4_3:56806783-56806802 Msa0650050:five_prime_UTR 30.0%
!!! GGGTGTTTTTGTTTTAAACT+TGG - chr4_3:56806808-56806827 Msa0650050:five_prime_UTR 30.0%
CATATGGTATGTTGTTGATA+TGG - chr4_3:56806903-56806922 Msa0650050:five_prime_UTR 30.0%
CTACCACAAATCAACTGTTT+CGG + chr4_3:56802956-56802975 None:intergenic 35.0%
AAAAGAAAAGAAAAGGGTGG+GGG + chr4_3:56803061-56803080 None:intergenic 35.0%
GAAAAGAAAAGAAAAGGGTG+GGG + chr4_3:56803062-56803081 None:intergenic 35.0%
GAATTGGGAATTGAGAAGAA+AGG + chr4_3:56803212-56803231 None:intergenic 35.0%
! TAATCCAATTCGTGTTTTCC+CGG + chr4_3:56803327-56803346 None:intergenic 35.0%
AACCCTAATTATGAAAAGGG+GGG + chr4_3:56803477-56803496 None:intergenic 35.0%
CTAGTAGAGAACTTAGTGTT+AGG + chr4_3:56803695-56803714 None:intergenic 35.0%
!!! TAGTTTTAGGTCCATTTGCA+TGG - chr4_3:56803712-56803731 Msa0650050:intron 35.0%
AGAAAGAATGTTGAGGTGAA+TGG - chr4_3:56803871-56803890 Msa0650050:intron 35.0%
GAAAGAATGTTGAGGTGAAT+GGG - chr4_3:56803872-56803891 Msa0650050:intron 35.0%
GATATTTGAATTCAGGGTAG+AGG - chr4_3:56804047-56804066 Msa0650050:intron 35.0%
CTAAAACTTGGTTTCTGCTA+GGG - chr4_3:56804113-56804132 Msa0650050:intron 35.0%
CCTATCTCACTAGATAGAAT+TGG + chr4_3:56804167-56804186 None:intergenic 35.0%
CCAATTCTATCTAGTGAGAT+AGG - chr4_3:56804164-56804183 Msa0650050:CDS 35.0%
! TCCAACAATGCAATTTTCCA+TGG - chr4_3:56804204-56804223 Msa0650050:intron 35.0%
TCCATGGAAAATTGCATTGT+TGG + chr4_3:56804208-56804227 None:intergenic 35.0%
! AACAATGCAATTTTCCATGG+AGG - chr4_3:56804207-56804226 Msa0650050:intron 35.0%
!!! CCTTGACAATGTTTTTTAGG+CGG - chr4_3:56804305-56804324 Msa0650050:intron 35.0%
!!! CTTGACAATGTTTTTTAGGC+GGG - chr4_3:56804306-56804325 Msa0650050:intron 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG - chr4_3:56804512-56804531 Msa0650050:intron 35.0%
TGGAGTAGAAAATGAATTGC+TGG - chr4_3:56804661-56804680 Msa0650050:intron 35.0%
TAGTAGTGTAGTGGTTTGAA+TGG - chr4_3:56804708-56804727 Msa0650050:intron 35.0%
TACCCATGTTATGAGGAATT+GGG + chr4_3:56804824-56804843 None:intergenic 35.0%
ACAAATGTACCCATGTTATG+AGG + chr4_3:56804831-56804850 None:intergenic 35.0%
TCATAACATGGGTACATTTG+TGG - chr4_3:56804830-56804849 Msa0650050:intron 35.0%
! GCACCATGTTTTATATCAAG+AGG - chr4_3:56804871-56804890 Msa0650050:CDS 35.0%
! GTTTAGTTCAATGAAAGGGA+AGG + chr4_3:56805106-56805125 None:intergenic 35.0%
GATTGGAGACTGAGATTAAA+AGG - chr4_3:56805368-56805387 Msa0650050:intron 35.0%
ACTAGACATCTGTTAGTTGA+AGG + chr4_3:56805457-56805476 None:intergenic 35.0%
AATCAAGATGACAAGTCCTA+AGG - chr4_3:56805531-56805550 Msa0650050:intron 35.0%
! GTTGGCCTAAAAAAACTACA+AGG + chr4_3:56805598-56805617 None:intergenic 35.0%
!!! GTTTTTTTAGGCCAACTTTC+CGG - chr4_3:56805602-56805621 Msa0650050:intron 35.0%
AGTAGTCAATGCTACAAGAT+GGG + chr4_3:56805639-56805658 None:intergenic 35.0%
TATTCAAACCCCAAAATGAC+TGG - chr4_3:56805668-56805687 Msa0650050:intron 35.0%
CACTCCAGAAATCATATCAT+AGG - chr4_3:56805694-56805713 Msa0650050:intron 35.0%
CTCCAGAAATCATATCATAG+GGG - chr4_3:56805696-56805715 Msa0650050:intron 35.0%
TCCAGAAATCATATCATAGG+GGG - chr4_3:56805697-56805716 Msa0650050:intron 35.0%
ATATGGACACAAAAGCAACA+AGG + chr4_3:56805852-56805871 None:intergenic 35.0%
! GTTGGCATCTTTCAACTTTT+GGG + chr4_3:56806021-56806040 None:intergenic 35.0%
! AGTTGGCATCTTTCAACTTT+TGG + chr4_3:56806022-56806041 None:intergenic 35.0%
AAAGTTGAAAGATGCCAACT+CGG - chr4_3:56806022-56806041 Msa0650050:intron 35.0%
GTACCCTTTATTAGTTATCC+AGG - chr4_3:56806410-56806429 Msa0650050:intron 35.0%
! CTAACAAAGCAAGAAGGTAT+TGG + chr4_3:56806571-56806590 None:intergenic 35.0%
!! GTTTCGTATCAGTTTTAGTG+AGG - chr4_3:56806684-56806703 Msa0650050:five_prime_UTR 35.0%
!!! CTTGTTTTTGGCTTGCAAAA+CGG - chr4_3:56806743-56806762 Msa0650050:five_prime_UTR 35.0%
!!! TTGTTTTTGGCTTGCAAAAC+GGG - chr4_3:56806744-56806763 Msa0650050:five_prime_UTR 35.0%
ATCAAGGAATGAAAAGTGGA+AGG - chr4_3:56806787-56806806 Msa0650050:five_prime_UTR 35.0%
TCAAGGAATGAAAAGTGGAA+GGG - chr4_3:56806788-56806807 Msa0650050:five_prime_UTR 35.0%
TCTCGGTACATATCTGAATT+CGG + chr4_3:56806866-56806885 None:intergenic 35.0%
AGCGAAGAAGGTGAAAAAGA+GGG + chr4_3:56803189-56803208 None:intergenic 40.0%
! AATCCAATTCGTGTTTTCCC+GGG + chr4_3:56803326-56803345 None:intergenic 40.0%
ACATTGGAAGCAAGGTTGAA+GGG + chr4_3:56803436-56803455 None:intergenic 40.0%
AATGAGTACAGACCTGACAT+TGG + chr4_3:56803452-56803471 None:intergenic 40.0%
! TTCCCCCCCTTTTCATAATT+AGG - chr4_3:56803471-56803490 Msa0650050:CDS 40.0%
! TCCCCCCCTTTTCATAATTA+GGG - chr4_3:56803472-56803491 Msa0650050:CDS 40.0%
ACCCTAATTATGAAAAGGGG+GGG + chr4_3:56803476-56803495 None:intergenic 40.0%
! ATAGTCCTCGATTTGTCTCA+TGG - chr4_3:56803748-56803767 Msa0650050:intron 40.0%
GCGAACAAGAAAGAATGTTG+AGG - chr4_3:56803864-56803883 Msa0650050:intron 40.0%
TTGAATTCAGGGTAGAGGAA+AGG - chr4_3:56804052-56804071 Msa0650050:intron 40.0%
! CCTAGCAGAAACCAAGTTTT+AGG + chr4_3:56804115-56804134 None:intergenic 40.0%
CCTAAAACTTGGTTTCTGCT+AGG - chr4_3:56804112-56804131 Msa0650050:intron 40.0%
TGTTGACATGTGAATGGGAA+AGG - chr4_3:56804243-56804262 Msa0650050:intron 40.0%
CCGCCTAAAAAACATTGTCA+AGG + chr4_3:56804308-56804327 None:intergenic 40.0%
GTTGAGTATGGGAAACTTAG+TGG - chr4_3:56804330-56804349 Msa0650050:intron 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG - chr4_3:56804455-56804474 Msa0650050:intron 40.0%
TAGTGTAGTGGTTTGAATGG+AGG - chr4_3:56804711-56804730 Msa0650050:intron 40.0%
TTCCCCAATTCCTCATAACA+TGG - chr4_3:56804818-56804837 Msa0650050:intron 40.0%
TCCCCAATTCCTCATAACAT+GGG - chr4_3:56804819-56804838 Msa0650050:intron 40.0%
ACCCATGTTATGAGGAATTG+GGG + chr4_3:56804823-56804842 None:intergenic 40.0%
GTACCCATGTTATGAGGAAT+TGG + chr4_3:56804825-56804844 None:intergenic 40.0%
AACATGGGTACATTTGTGGT+TGG - chr4_3:56804834-56804853 Msa0650050:intron 40.0%
! CTGAAATTGATGGCTCGTTA+GGG - chr4_3:56805022-56805041 Msa0650050:intron 40.0%
! TGAAATTGATGGCTCGTTAG+GGG - chr4_3:56805023-56805042 Msa0650050:intron 40.0%
! AAGAGTCTGGTTCAAAGAAG+AGG - chr4_3:56805061-56805080 Msa0650050:intron 40.0%
TAGTTCAATGAAAGGGAAGG+AGG + chr4_3:56805103-56805122 None:intergenic 40.0%
!!! CACACGCTGATTCCTTTTTT+AGG + chr4_3:56805170-56805189 None:intergenic 40.0%
GATTTAAACAGGGAGTAGCT+AGG + chr4_3:56805295-56805314 None:intergenic 40.0%
CTGAGATTAAAAGGCAGTGT+TGG - chr4_3:56805377-56805396 Msa0650050:intron 40.0%
GATAACATATGCAACGCCTT+AGG + chr4_3:56805550-56805569 None:intergenic 40.0%
GAAAGATAATGCCGGAAAGT+TGG + chr4_3:56805616-56805635 None:intergenic 40.0%
AAGATGGGGAAAGATAATGC+CGG + chr4_3:56805624-56805643 None:intergenic 40.0%
GTAGTCAATGCTACAAGATG+GGG + chr4_3:56805638-56805657 None:intergenic 40.0%
CAGTAGTCAATGCTACAAGA+TGG + chr4_3:56805640-56805659 None:intergenic 40.0%
!! GAGTGAATCCAGTCATTTTG+GGG + chr4_3:56805679-56805698 None:intergenic 40.0%
!! GGAGTGAATCCAGTCATTTT+GGG + chr4_3:56805680-56805699 None:intergenic 40.0%
! TGGAGTGAATCCAGTCATTT+TGG + chr4_3:56805681-56805700 None:intergenic 40.0%
TCCCCCTATGATATGATTTC+TGG + chr4_3:56805701-56805720 None:intergenic 40.0%
TTTGTGTCCATATGTAGCTC+TGG - chr4_3:56805859-56805878 Msa0650050:intron 40.0%
TATTGAACTAGGCTCCATCT+TGG - chr4_3:56805914-56805933 Msa0650050:intron 40.0%
AAGTTGAAAGATGCCAACTC+GGG - chr4_3:56806023-56806042 Msa0650050:intron 40.0%
!! AGCAAGAAGGTATTGGTGAT+AGG + chr4_3:56806564-56806583 None:intergenic 40.0%
AAATACAAACGGAAGCCACT+GGG + chr4_3:56806611-56806630 None:intergenic 40.0%
AGGCAAACGATAATCTAGTG+AGG - chr4_3:56806704-56806723 Msa0650050:five_prime_UTR 40.0%
!!! TGTTTTTGGCTTGCAAAACG+GGG - chr4_3:56806745-56806764 Msa0650050:five_prime_UTR 40.0%
TACTTCAACACCACACATCT+CGG + chr4_3:56806883-56806902 None:intergenic 40.0%
! GTGTGGTGTTGAAGTACATA+TGG - chr4_3:56806887-56806906 Msa0650050:five_prime_UTR 40.0%
CCACAAATCAACTGTTTCGG+TGG + chr4_3:56802953-56802972 None:intergenic 45.0%
!! CCACCGAAACAGTTGATTTG+TGG - chr4_3:56802950-56802969 Msa0650050:three_prime_UTR 45.0%
GCGAAGAAGGTGAAAAAGAG+GGG + chr4_3:56803188-56803207 None:intergenic 45.0%
GAGCGAAGAAGGTGAAAAAG+AGG + chr4_3:56803190-56803209 None:intergenic 45.0%
TGAGAAGAAAGGAGCGAAGA+AGG + chr4_3:56803201-56803220 None:intergenic 45.0%
CGGTTGCACGAATGAGAATT+GGG + chr4_3:56803227-56803246 None:intergenic 45.0%
TCGGTTGCACGAATGAGAAT+TGG + chr4_3:56803228-56803247 None:intergenic 45.0%
AAGGTAGCTAGGGTACGAAA+TGG - chr4_3:56803297-56803316 Msa0650050:three_prime_UTR 45.0%
TAGGGTACGAAATGGTTTCC+CGG - chr4_3:56803305-56803324 Msa0650050:three_prime_UTR 45.0%
TTTCCCGGGAAAACACGAAT+TGG - chr4_3:56803320-56803339 Msa0650050:three_prime_UTR 45.0%
AGGAAGAGCGAAGGTTGAAT+CGG + chr4_3:56803383-56803402 None:intergenic 45.0%
ATTGGAAGCAAGGTTGAAGG+GGG + chr4_3:56803434-56803453 None:intergenic 45.0%
CATTGGAAGCAAGGTTGAAG+GGG + chr4_3:56803435-56803454 None:intergenic 45.0%
GACATTGGAAGCAAGGTTGA+AGG + chr4_3:56803437-56803456 None:intergenic 45.0%
TCAACCTTGCTTCCAATGTC+AGG - chr4_3:56803437-56803456 Msa0650050:exon 45.0%
CTCGTGCTAGATGGATGAAA+TGG - chr4_3:56803772-56803791 Msa0650050:intron 45.0%
AGAATGTTGAGGTGAATGGG+TGG - chr4_3:56803875-56803894 Msa0650050:intron 45.0%
! TTCAATGGAAGTTGGTCTGC+AGG - chr4_3:56803926-56803945 Msa0650050:CDS 45.0%
CGGAAAAGCGGATCAAATAG+AGG - chr4_3:56804025-56804044 Msa0650050:intron 45.0%
! TGCAATTTTCCATGGAGGCA+TGG - chr4_3:56804212-56804231 Msa0650050:intron 45.0%
!! GCAATTTTCCATGGAGGCAT+GGG - chr4_3:56804213-56804232 Msa0650050:intron 45.0%
!! TGCTGGTGTTGACATGTGAA+TGG - chr4_3:56804237-56804256 Msa0650050:intron 45.0%
!! GCTGGTGTTGACATGTGAAT+GGG - chr4_3:56804238-56804257 Msa0650050:intron 45.0%
! TTTTAGGCGGGAGTTGAGTA+TGG - chr4_3:56804318-56804337 Msa0650050:intron 45.0%
TTTAGGCGGGAGTTGAGTAT+GGG - chr4_3:56804319-56804338 Msa0650050:intron 45.0%
! GCTGCTAGTGCTGAAATTGA+TGG - chr4_3:56805012-56805031 Msa0650050:intron 45.0%
! GCTGAAATTGATGGCTCGTT+AGG - chr4_3:56805021-56805040 Msa0650050:intron 45.0%
TCTGACAGTCTCAAAGAGTC+TGG - chr4_3:56805048-56805067 Msa0650050:intron 45.0%
TCCTATTTGTATCGCTGGCA+AGG + chr4_3:56805424-56805443 None:intergenic 45.0%
AGTGCTCCTATTTGTATCGC+TGG + chr4_3:56805429-56805448 None:intergenic 45.0%
CTACTAGCTCCAAAGCATGT+CGG - chr4_3:56805780-56805799 Msa0650050:intron 45.0%
TACTAGCTCCAAAGCATGTC+GGG - chr4_3:56805781-56805800 Msa0650050:intron 45.0%
GTACACACCAGAGCTACATA+TGG + chr4_3:56805869-56805888 None:intergenic 45.0%
TCCGAATGGTGACACAGTTA+AGG - chr4_3:56805988-56806007 Msa0650050:intron 45.0%
CCCTTAACTGTGTCACCATT+CGG + chr4_3:56805992-56806011 None:intergenic 45.0%
CCGAATGGTGACACAGTTAA+GGG - chr4_3:56805989-56806008 Msa0650050:intron 45.0%
CGAATGGTGACACAGTTAAG+GGG - chr4_3:56805990-56806009 Msa0650050:intron 45.0%
! CTTTTCTTGAAGACCCGAGT+TGG + chr4_3:56806039-56806058 None:intergenic 45.0%
AACTTCGTGACGAGAAACAG+AGG - chr4_3:56806258-56806277 Msa0650050:intron 45.0%
CAAGGCAGAGAAAGAGAAGT+TGG - chr4_3:56806283-56806302 Msa0650050:intron 45.0%
!! GGGTACCAATTTGTTGCCAT+GGG + chr4_3:56806396-56806415 None:intergenic 45.0%
!! AGGGTACCAATTTGTTGCCA+TGG + chr4_3:56806397-56806416 None:intergenic 45.0%
GTTATCCAGGAGTTGCAATG+TGG - chr4_3:56806423-56806442 Msa0650050:intron 45.0%
AATTGCCACATTGCAACTCC+TGG + chr4_3:56806431-56806450 None:intergenic 45.0%
ACGAAGTACATGATCCTGTG+AGG + chr4_3:56806477-56806496 None:intergenic 45.0%
!! CTGGCTCTGTGCAATTCTTT+GGG - chr4_3:56806513-56806532 Msa0650050:CDS 45.0%
TGTATTCTAACTGGACCCAG+TGG - chr4_3:56806593-56806612 Msa0650050:CDS 45.0%
CAAATACAAACGGAAGCCAC+TGG + chr4_3:56806612-56806631 None:intergenic 45.0%
CAGTGGCTTCCGTTTGTATT+TGG - chr4_3:56806610-56806629 Msa0650050:CDS 45.0%
! TTCGGTTCGTGTGAGTACAA+GGG + chr4_3:56806848-56806867 None:intergenic 45.0%
! ATTCGGTTCGTGTGAGTACA+AGG + chr4_3:56806849-56806868 None:intergenic 45.0%
CAGATATGTACCGAGATGTG+TGG - chr4_3:56806870-56806889 Msa0650050:five_prime_UTR 45.0%
GATATTAAACCTCCACGCTC+TGG - chr4_3:56806936-56806955 Msa0650050:five_prime_UTR 45.0%
!! TAATTAATTAATGTATAAAA+TGG + chr4_3:56803101-56803120 None:intergenic 5.0%
GGGGGAATCTGTGTTTGTGT+GGG + chr4_3:56803043-56803062 None:intergenic 50.0%
TGGGGGAATCTGTGTTTGTG+TGG + chr4_3:56803044-56803063 None:intergenic 50.0%
AGGGTACGAAATGGTTTCCC+GGG - chr4_3:56803306-56803325 Msa0650050:three_prime_UTR 50.0%
AGCGAAGGTTGAATCGGGAA+CGG + chr4_3:56803377-56803396 None:intergenic 50.0%
GGAAGAGCGAAGGTTGAATC+GGG + chr4_3:56803382-56803401 None:intergenic 50.0%
TTGGAAGCAAGGTTGAAGGG+GGG + chr4_3:56803433-56803452 None:intergenic 50.0%
CAGACCTGACATTGGAAGCA+AGG + chr4_3:56803444-56803463 None:intergenic 50.0%
CGAGTCCATGAGACAAATCG+AGG + chr4_3:56803756-56803775 None:intergenic 50.0%
TCTCATGGACTCGTGCTAGA+TGG - chr4_3:56803763-56803782 Msa0650050:intron 50.0%
ATTGGGGAACATGCTACAGC+TGG + chr4_3:56804807-56804826 None:intergenic 50.0%
GCCTTGCCAGCGATACAAAT+AGG - chr4_3:56805420-56805439 Msa0650050:intron 50.0%
CAACTTCTCCCGACATGCTT+TGG + chr4_3:56805792-56805811 None:intergenic 50.0%
! AATCAGGATGGCAGCCTTGT+CGG + chr4_3:56805961-56805980 None:intergenic 50.0%
TCGGACAGCATCAATCAGGA+TGG + chr4_3:56805973-56805992 None:intergenic 50.0%
CCATTCGGACAGCATCAATC+AGG + chr4_3:56805977-56805996 None:intergenic 50.0%
CCTGATTGATGCTGTCCGAA+TGG - chr4_3:56805974-56805993 Msa0650050:intron 50.0%
TGACGAGAAACAGAGGCTCA+AGG - chr4_3:56806265-56806284 Msa0650050:intron 50.0%
!! CCAATTTGTTGCCATGGGCT+TGG + chr4_3:56806391-56806410 None:intergenic 50.0%
CCAAGCCCATGGCAACAAAT+TGG - chr4_3:56806388-56806407 Msa0650050:intron 50.0%
ATTTATGCCACCTGCTGCAG+TGG - chr4_3:56806448-56806467 Msa0650050:intron 50.0%
GAATTGCACAGAGCCAGCTT+AGG + chr4_3:56806510-56806529 None:intergenic 50.0%
!! GCTGGCTCTGTGCAATTCTT+TGG - chr4_3:56806512-56806531 Msa0650050:CDS 50.0%
GTGCTTGGGTCACTATTGTG+AGG - chr4_3:56806974-56806993 Msa0650050:five_prime_UTR 50.0%
TCGTACCCTAGCTACCTTCC+CGG + chr4_3:56803295-56803314 None:intergenic 55.0%
GCGAAGGTTGAATCGGGAAC+GGG + chr4_3:56803376-56803395 None:intergenic 55.0%
TGGTTTCTGCTAGGGCCCAA+TGG - chr4_3:56804121-56804140 Msa0650050:CDS 55.0%
AAGGCCTGCCAAAACCGACA+AGG - chr4_3:56805944-56805963 Msa0650050:intron 55.0%
!!! GATGGCAGCCTTGTCGGTTT+TGG + chr4_3:56805955-56805974 None:intergenic 55.0%
GCGGTAGGCAAGAAACTAGG+TGG + chr4_3:56806335-56806354 None:intergenic 55.0%
GTGGCGGTAGGCAAGAAACT+AGG + chr4_3:56806338-56806357 None:intergenic 55.0%
CTTGTGCAGCAAATGCCGCA+GGG + chr4_3:56806367-56806386 None:intergenic 55.0%
! TGTGAGGTATCCACTGCAGC+AGG + chr4_3:56806461-56806480 None:intergenic 55.0%
TGCTGCAGTGGATACCTCAC+AGG - chr4_3:56806460-56806479 Msa0650050:intron 55.0%
ACAGAGCCAGCTTAGGCAAC+TGG + chr4_3:56806503-56806522 None:intergenic 55.0%
ACCACAGTGCTCATGGTGCT+TGG - chr4_3:56806959-56806978 Msa0650050:five_prime_UTR 55.0%
CCACAGTGCTCATGGTGCTT+GGG - chr4_3:56806960-56806979 Msa0650050:five_prime_UTR 55.0%
TTGGATCGGACGTTGCACCA+AGG - chr4_3:56807034-56807053 Msa0650050:five_prime_UTR 55.0%
TGGATCGGACGTTGCACCAA+GGG - chr4_3:56807035-56807054 Msa0650050:five_prime_UTR 55.0%
TTCCTTCCTCCGCCTTCACC+TGG - chr4_3:56803398-56803417 Msa0650050:three_prime_UTR 60.0%
AGGTTGAAGGGGGGCTGAGT+GGG + chr4_3:56803424-56803443 None:intergenic 60.0%
AAGGTTGAAGGGGGGCTGAG+TGG + chr4_3:56803425-56803444 None:intergenic 60.0%
CTAGGCTCCATCTTGGAGCC+TGG - chr4_3:56805921-56805940 Msa0650050:intron 60.0%
GCTCCATCTTGGAGCCTGGA+AGG - chr4_3:56805925-56805944 Msa0650050:intron 60.0%
AGGCCTTCCAGGCTCCAAGA+TGG + chr4_3:56805931-56805950 None:intergenic 60.0%
!! TCGGTTTTGGCAGGCCTTCC+AGG + chr4_3:56805942-56805961 None:intergenic 60.0%
!!! GCAGCCTTGTCGGTTTTGGC+AGG + chr4_3:56805951-56805970 None:intergenic 60.0%
AGCAAATGCCGCAGGGAGTG+CGG + chr4_3:56806360-56806379 None:intergenic 60.0%
CCTTGTGCAGCAAATGCCGC+AGG + chr4_3:56806368-56806387 None:intergenic 60.0%
! CCTGCGGCATTTGCTGCACA+AGG - chr4_3:56806365-56806384 Msa0650050:intron 60.0%
! GAGGTATCCACTGCAGCAGG+TGG + chr4_3:56806458-56806477 None:intergenic 60.0%
CGTCCTCCAGTTGCCTAAGC+TGG - chr4_3:56806494-56806513 Msa0650050:CDS 60.0%
GAGCCAGCTTAGGCAACTGG+AGG + chr4_3:56806500-56806519 None:intergenic 60.0%
! GCTCTGGACCACAGTGCTCA+TGG - chr4_3:56806952-56806971 Msa0650050:five_prime_UTR 60.0%
! CCCAAGCACCATGAGCACTG+TGG + chr4_3:56806963-56806982 None:intergenic 60.0%
AGCGATTCGCTGTCACGCGC+CGG - chr4_3:56803273-56803292 Msa0650050:three_prime_UTR 65.0%
ACGCGCCGGGAAGGTAGCTA+GGG - chr4_3:56803287-56803306 Msa0650050:three_prime_UTR 65.0%
GGCGGAGGAAGGAAGAGCGA+AGG + chr4_3:56803392-56803411 None:intergenic 65.0%
CTGAGTGGGCCAGGTGAAGG+CGG + chr4_3:56803410-56803429 None:intergenic 65.0%
! TCCATGGAGGCATGGGCTGC+TGG - chr4_3:56804220-56804239 Msa0650050:intron 65.0%
ACCAGCAGCCCATGCCTCCA+TGG + chr4_3:56804224-56804243 None:intergenic 65.0%
! AAATGCCGCAGGGAGTGCGG+TGG + chr4_3:56806357-56806376 None:intergenic 65.0%
GCTGCACAAGGCCAAGCCCA+TGG - chr4_3:56806377-56806396 Msa0650050:intron 65.0%
CACTGTGGTCCAGAGCGTGG+AGG + chr4_3:56806948-56806967 None:intergenic 65.0%
! GAGCACTGTGGTCCAGAGCG+TGG + chr4_3:56806951-56806970 None:intergenic 65.0%
GCGATTCGCTGTCACGCGCC+GGG - chr4_3:56803274-56803293 Msa0650050:three_prime_UTR 70.0%
TTCGCTGTCACGCGCCGGGA+AGG - chr4_3:56803278-56803297 Msa0650050:three_prime_UTR 70.0%
CACGCGCCGGGAAGGTAGCT+AGG - chr4_3:56803286-56803305 Msa0650050:three_prime_UTR 70.0%
GGCCAGGTGAAGGCGGAGGA+AGG + chr4_3:56803403-56803422 None:intergenic 70.0%
AGTGGGCCAGGTGAAGGCGG+AGG + chr4_3:56803407-56803426 None:intergenic 70.0%
GGGCTGAGTGGGCCAGGTGA+AGG + chr4_3:56803413-56803432 None:intergenic 70.0%
TACCGCCACCGCACTCCCTG+CGG - chr4_3:56806349-56806368 Msa0650050:intron 70.0%
GAAGGGGGGCTGAGTGGGCC+AGG + chr4_3:56803419-56803438 None:intergenic 75.0%
! GCAGGGAGTGCGGTGGCGGT+AGG + chr4_3:56806350-56806369 None:intergenic 75.0%
! TGCCGCAGGGAGTGCGGTGG+CGG + chr4_3:56806354-56806373 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 56802889 56807061 56802889 ID=Msa0650050;Name=Msa0650050
chr4_3 mRNA 56802889 56807061 56802889 ID=Msa0650050-mRNA-1;Parent=Msa0650050;Name=Msa0650050-mRNA-1;_AED=0.21;_eAED=0.21;_QI=427|1|1|1|1|1|5|550|237
chr4_3 exon 56802889 56803705 56802889 ID=Msa0650050-mRNA-1:exon:14913;Parent=Msa0650050-mRNA-1
chr4_3 exon 56803877 56804039 56803877 ID=Msa0650050-mRNA-1:exon:14912;Parent=Msa0650050-mRNA-1
chr4_3 exon 56804116 56804193 56804116 ID=Msa0650050-mRNA-1:exon:14911;Parent=Msa0650050-mRNA-1
chr4_3 exon 56804868 56804930 56804868 ID=Msa0650050-mRNA-1:exon:14910;Parent=Msa0650050-mRNA-1
chr4_3 exon 56806492 56807061 56806492 ID=Msa0650050-mRNA-1:exon:14909;Parent=Msa0650050-mRNA-1
chr4_3 five_prime_UTR 56806635 56807061 56806635 ID=Msa0650050-mRNA-1:five_prime_utr;Parent=Msa0650050-mRNA-1
chr4_3 CDS 56806492 56806634 56806492 ID=Msa0650050-mRNA-1:cds;Parent=Msa0650050-mRNA-1
chr4_3 CDS 56804868 56804930 56804868 ID=Msa0650050-mRNA-1:cds;Parent=Msa0650050-mRNA-1
chr4_3 CDS 56804116 56804193 56804116 ID=Msa0650050-mRNA-1:cds;Parent=Msa0650050-mRNA-1
chr4_3 CDS 56803877 56804039 56803877 ID=Msa0650050-mRNA-1:cds;Parent=Msa0650050-mRNA-1
chr4_3 CDS 56803439 56803705 56803439 ID=Msa0650050-mRNA-1:cds;Parent=Msa0650050-mRNA-1
chr4_3 three_prime_UTR 56802889 56803438 56802889 ID=Msa0650050-mRNA-1:three_prime_utr;Parent=Msa0650050-mRNA-1
Gene Sequence

>Msa0650050

ATGGTTTCCCGGGAAAACACGAATTGGATTAACGATTACGGTTTCTATGATGATATTCCCGTTCCCGATTCAACCTTCGCTCTTCCTTCCTCCGCCTTCACCTGGCCCACTCAGCCCCCCTTCAACCTTGCTTCCAATGTCAGTGCTGAAATTGATGGCTCGTTAGGGGATTCTGACAGTCTCAAAGAGTCTGGTTCAAAGAAGAGGGTTAGATCTGAGTCATGTGCTGCTACTAGCTCCAAAGCATGTCGGGAGAAGTTGCGTAGAGATAGACTTAACGACAAGTTTATTGAACTAGGCTCCATCTTGGAGCCTGGAAGGCCTGCCAAAACCGACAAGGCTGCCATCCTGATTGATGCTGTCCGAATGGTGACACAGTTAAGGGGTGAAGCCCAAAAGTTGAAAGATGCCAACTCGGGTCTTCAAGAAAAGATTAAAGAGTTAAAGGTTGAGAAGAATGAACTTCGTGACGAGAAACAGAGGCTCAAGGCAGAGAAAGAGAAGTTGGAGCAGCAGCTGAAATCAATGAATGCACCACCTAGTTTCTTGCCTACCGCCACCGCACTCCCTGCGGCATTTGCTGCACAAGGCCAAGCCCATGGCAACAAATTGGTACCCTTTATTAGTTATCCAGGAGTTGCAATGTGGCAATTTATGCCACCTGCTGCAGTGGATACCTCACAGGATCATGTACTTCGTCCTCCAGTTGCCTAA
Protein sequence

>Msa0650050

MVSRENTNWINDYGFYDDIPVPDSTFALPSSAFTWPTQPPFNLASNVSAEIDGSLGDSDSLKESGSKKRVRSESCAATSSKACREKLRRDRLNDKFIELGSILEPGRPAKTDKAAILIDAVRMVTQLRGEAQKLKDANSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQLKSMNAPPSFLPTATALPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA*