AlfalfaGEDB | Msa0296630

M. sativa cultivar zhongmu-4 / Msa0296630

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0296630	XP_003596613.1	98.696	230	2	1	1	229	1	230	3.78e-164	462

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0296630	sp\|Q9FH37\|ILR3_ARATH	69.787	235	64	5	1	229	1	234	2.23e-107	311

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0296630	B7FHX6	98.696	230	2	1	1	229	1	230	1.80e-164	462

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TFs/TRs:

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Gene ID	Type	Classification
Msa0296630	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0024930	Msa0296630	-0.832622	8.510586e-56	-8.615850e-47
Msa0072420	Msa0296630	-0.831975	1.230864e-55	-8.615850e-47
Msa0120880	Msa0296630	-0.812382	4.360405e-51	-8.615850e-47
Msa0125450	Msa0296630	-0.803462	3.446704e-49	-8.615850e-47
Msa0149440	Msa0296630	-0.814648	1.384119e-51	-8.615850e-47
Msa0177960	Msa0296630	-0.825417	4.742495e-54	-8.615850e-47
Msa0202490	Msa0296630	-0.835028	2.130141e-56	-8.615850e-47
Msa0204960	Msa0296630	-0.816490	5.384925e-52	-8.615850e-47
Msa0217670	Msa0296630	-0.805836	1.101393e-49	-8.615850e-47
Msa0232790	Msa0296630	-0.805551	1.263879e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0296630	MtrunA17_Chr2g0319301	98.696	230	2	1	1	229	1	230	3.47e-168	462
Msa0296630	MtrunA17_Chr4g0042041	78.571	238	41	4	1	229	1	237	2.13e-125	354
Msa0296630	MtrunA17_Chr2g0323031	50.195	257	84	8	9	229	12	260	9.91e-73	222
Msa0296630	MtrunA17_Chr1g0167821	52.273	176	80	1	54	229	75	246	4.86e-58	184
Msa0296630	MtrunA17_Chr4g0038511	51.515	99	47	1	69	167	6	103	3.85e-23	94.4
Msa0296630	MtrunA17_Chr1g0161461	36.806	144	78	3	32	167	36	174	1.55e-19	85.9
Msa0296630	MtrunA17_Chr4g0060591	33.898	118	74	2	51	168	13	126	2.12e-13	67.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0296630	AT5G54680.1	69.787	235	64	5	1	229	1	234	2.27e-108	311
Msa0296630	AT1G51070.1	62.343	239	67	6	1	229	1	226	6.23e-95	277
Msa0296630	AT1G51070.2	65.829	199	57	4	36	229	100	292	3.20e-84	252
Msa0296630	AT4G14410.2	52.041	196	77	6	37	229	96	277	2.87e-55	178
Msa0296630	AT4G14410.3	52.041	196	77	6	37	229	96	277	2.87e-55	178
Msa0296630	AT4G14410.1	52.041	196	77	6	37	229	102	283	3.25e-55	178
Msa0296630	AT3G23210.2	52.261	199	87	5	35	229	97	291	5.16e-55	178
Msa0296630	AT3G23210.1	52.261	199	87	5	35	229	126	320	1.42e-54	177
Msa0296630	AT3G19860.1	45.299	117	59	2	66	178	2	117	1.27e-22	93.6
Msa0296630	AT3G19860.3	45.299	117	59	2	66	178	33	148	2.31e-22	93.6

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Find 98 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAAAACCACGTTTGA+GGG	0.462810	2_3:-50035865	None:intergenic
AAATCTCATTTCTTCACCGC+CGG	0.486690	2_3:+50035991	Msa0296630:five_prime_UTR
AACTAAAAGGAAAGAGTGTA+TGG	0.377933	2_3:-50038152	None:intergenic
AACTCCGTGATGAGAAGCAG+AGG	0.627738	2_3:+50037842	Msa0296630:CDS
AAGAACCTGGTTCGAAGAAG+AGG	0.561194	2_3:+50036999	Msa0296630:CDS
AAGGAGCCATCGACAGAAAC+AGG	0.397378	2_3:-50036108	None:intergenic
AAGGCCTCCTAAAACAGACA+AGG	0.687344	2_3:+50037527	Msa0296630:CDS
AAGTTGAAAGACTCAAATTC+AGG	0.412450	2_3:+50037606	Msa0296630:CDS
AATCTCATTTCTTCACCGCC+GGG	0.536866	2_3:+50035992	Msa0296630:five_prime_UTR
AATGCAGCAGGGATTGCAGG+AGG	0.644570	2_3:-50037937	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGAAAACCACGTTTGA+GGG	-	chr2_3:50035868-50035887	None:intergenic	30.0%
AAAAATGAAAACCACGTTTG+AGG	-	chr2_3:50035869-50035888	None:intergenic	30.0%
CAGGAATTTCATCAATCAAA+GGG	-	chr2_3:50036092-50036111	None:intergenic	30.0%
ACAGGAATTTCATCAATCAA+AGG	-	chr2_3:50036093-50036112	None:intergenic	30.0%
TTTGTAGTAGAACTTGAACT+AGG	+	chr2_3:50036384-50036403	Msa0296630:intron	30.0%
AAGGAATTGCAACAGTAATT+GGG	-	chr2_3:50036815-50036834	None:intergenic	30.0%
AAAGGAATTGCAACAGTAAT+TGG	-	chr2_3:50036816-50036835	None:intergenic	30.0%
AAACCTAAAATCCAAGGTAA+AGG	-	chr2_3:50036834-50036853	None:intergenic	30.0%
AAACCAAAACCTAAAATCCA+AGG	-	chr2_3:50036840-50036859	None:intergenic	30.0%
CTATCATCCATTTCAATACT+AGG	-	chr2_3:50036953-50036972	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	50035773	50038472	50035773	ID=Msa0296630;Name=Msa0296630
chr2_3	mRNA	50035773	50038472	50035773	ID=Msa0296630-mRNA-1;Parent=Msa0296630;Name=Msa0296630-mRNA-1;_AED=0.03;_eAED=0.03;_QI=278\|1\|1\|1\|1\|1\|5\|380\|229
chr2_3	exon	50035773	50036169	50035773	ID=Msa0296630-mRNA-1:exon:15691;Parent=Msa0296630-mRNA-1
chr2_3	exon	50036955	50037020	50036955	ID=Msa0296630-mRNA-1:exon:15692;Parent=Msa0296630-mRNA-1
chr2_3	exon	50037309	50037386	50037309	ID=Msa0296630-mRNA-1:exon:15693;Parent=Msa0296630-mRNA-1
chr2_3	exon	50037494	50037656	50037494	ID=Msa0296630-mRNA-1:exon:15694;Parent=Msa0296630-mRNA-1
chr2_3	exon	50037829	50038472	50037829	ID=Msa0296630-mRNA-1:exon:15695;Parent=Msa0296630-mRNA-1
chr2_3	five_prime_UTR	50035773	50036050	50035773	ID=Msa0296630-mRNA-1:five_prime_utr;Parent=Msa0296630-mRNA-1
chr2_3	CDS	50036051	50036169	50036051	ID=Msa0296630-mRNA-1:cds;Parent=Msa0296630-mRNA-1
chr2_3	CDS	50036955	50037020	50036955	ID=Msa0296630-mRNA-1:cds;Parent=Msa0296630-mRNA-1
chr2_3	CDS	50037309	50037386	50037309	ID=Msa0296630-mRNA-1:cds;Parent=Msa0296630-mRNA-1
chr2_3	CDS	50037494	50037656	50037494	ID=Msa0296630-mRNA-1:cds;Parent=Msa0296630-mRNA-1
chr2_3	CDS	50037829	50038092	50037829	ID=Msa0296630-mRNA-1:cds;Parent=Msa0296630-mRNA-1
chr2_3	three_prime_UTR	50038093	50038472	50038093	ID=Msa0296630-mRNA-1:three_prime_utr;Parent=Msa0296630-mRNA-1

Gene Sequence

>Msa0296630

ATGGTTTCCCCGGAAAACACCAATTGGCTTTTCGATTACCCTTTGATTGATGAAATTCCTGTTTCTGTCGATGGCTCCTTCGCCTTCACGTGGCCCCCACCTCAACTCTCCAATGGCGGTATTGAAATGGATGATAGCTCTCTAGTGGATTCTGATGGTATCAAAGAACCTGGTTCGAAGAAGAGAGGTAGATCGGATTCATGTGCTCCTTCCAGCTCTAAGGCATGTCGAGAGAAGTTGCGGAGGGATAGGCTGAACGACAAGTTTGTTGAATTAGGCTCCATCTTGGAGCCTGGAAGGCCTCCTAAAACAGACAAGGCGGCAATTCTGATTGATGCTGTCCGAATGGTGACACAGTTGCGGGGTGAAGCCCAAAAGTTGAAAGACTCAAATTCAGGTCTTCAAGAGAAGATTAAAGAGTTAAAGGTTGAGAAGAATGAACTCCGTGATGAGAAGCAGAGGCTTAAGGCCGAGAAGGAGAAGTTGGAGCAGCAGGTGAAATCAATGAACACCCAACCCAGTTTCTTGACACACCCTCCTGCAATCCCTGCTGCATTTGCTCATCAAGGCCAAGCCCCAAACAAGTTAATGCCTTTCATGAGTTATCCAGGAGTTGCCATGTGGCAATTCATGCCACCAGCCGCCGTGGATACCTCACAAGATCATGTACTCCGTCCACCAGTTGCCTAA

Protein sequence

>Msa0296630

MVSPENTNWLFDYPLIDEIPVSVDGSFAFTWPPPQLSNGGIEMDDSSLVDSDGIKEPGSKKRGRSDSCAPSSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRGEAQKLKDSNSGLQEKIKELKVEKNELRDEKQRLKAEKEKLEQQVKSMNTQPSFLTHPPAIPAAFAHQGQAPNKLMPFMSYPGVAMWQFMPPAAVDTSQDHVLRPPVA*