Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296630 | XP_003596613.1 | 98.696 | 230 | 2 | 1 | 1 | 229 | 1 | 230 | 3.78e-164 | 462 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296630 | sp|Q9FH37|ILR3_ARATH | 69.787 | 235 | 64 | 5 | 1 | 229 | 1 | 234 | 2.23e-107 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296630 | B7FHX6 | 98.696 | 230 | 2 | 1 | 1 | 229 | 1 | 230 | 1.80e-164 | 462 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0296630 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024930 | Msa0296630 | -0.832622 | 8.510586e-56 | -8.615850e-47 |
| Msa0072420 | Msa0296630 | -0.831975 | 1.230864e-55 | -8.615850e-47 |
| Msa0120880 | Msa0296630 | -0.812382 | 4.360405e-51 | -8.615850e-47 |
| Msa0125450 | Msa0296630 | -0.803462 | 3.446704e-49 | -8.615850e-47 |
| Msa0149440 | Msa0296630 | -0.814648 | 1.384119e-51 | -8.615850e-47 |
| Msa0177960 | Msa0296630 | -0.825417 | 4.742495e-54 | -8.615850e-47 |
| Msa0202490 | Msa0296630 | -0.835028 | 2.130141e-56 | -8.615850e-47 |
| Msa0204960 | Msa0296630 | -0.816490 | 5.384925e-52 | -8.615850e-47 |
| Msa0217670 | Msa0296630 | -0.805836 | 1.101393e-49 | -8.615850e-47 |
| Msa0232790 | Msa0296630 | -0.805551 | 1.263879e-49 | -8.615850e-47 |
| Msa0244980 | Msa0296630 | -0.807144 | 5.833250e-50 | -8.615850e-47 |
| Msa0245580 | Msa0296630 | -0.839355 | 1.665144e-57 | -8.615850e-47 |
| Msa0249580 | Msa0296630 | -0.803635 | 3.172780e-49 | -8.615850e-47 |
| Msa0257330 | Msa0296630 | 0.893056 | 8.966275e-75 | -8.615850e-47 |
| Msa0257490 | Msa0296630 | -0.828970 | 6.687198e-55 | -8.615850e-47 |
| Msa0272300 | Msa0296630 | -0.801469 | 8.872039e-49 | -8.615850e-47 |
| Msa0275360 | Msa0296630 | -0.800945 | 1.135927e-48 | -8.615850e-47 |
| Msa0281530 | Msa0296630 | -0.843811 | 1.113709e-58 | -8.615850e-47 |
| Msa0284180 | Msa0296630 | -0.828244 | 1.001247e-54 | -8.615850e-47 |
| Msa0296630 | Msa0296790 | -0.820539 | 6.503502e-53 | -8.615850e-47 |
| Msa0296630 | Msa0319640 | -0.816881 | 4.399162e-52 | -8.615850e-47 |
| Msa0296630 | Msa0320590 | -0.818875 | 1.560025e-52 | -8.615850e-47 |
| Msa0296630 | Msa0322240 | -0.802307 | 5.970206e-49 | -8.615850e-47 |
| Msa0296630 | Msa0343500 | -0.806816 | 6.846191e-50 | -8.615850e-47 |
| Msa0296630 | Msa0377820 | -0.847369 | 1.208039e-59 | -8.615850e-47 |
| Msa0296630 | Msa0385500 | -0.850984 | 1.192532e-60 | -8.615850e-47 |
| Msa0296630 | Msa0426580 | -0.821822 | 3.291047e-53 | -8.615850e-47 |
| Msa0296630 | Msa0462600 | -0.832604 | 8.596732e-56 | -8.615850e-47 |
| Msa0296630 | Msa0463850 | -0.804650 | 1.951160e-49 | -8.615850e-47 |
| Msa0296630 | Msa0472930 | -0.842143 | 3.094770e-58 | -8.615850e-47 |
| Msa0296630 | Msa0517590 | -0.806448 | 8.186320e-50 | -8.615850e-47 |
| Msa0296630 | Msa0539410 | -0.823591 | 1.275708e-53 | -8.615850e-47 |
| Msa0296630 | Msa0549450 | -0.807869 | 4.094865e-50 | -8.615850e-47 |
| Msa0296630 | Msa0581110 | -0.822485 | 2.310497e-53 | -8.615850e-47 |
| Msa0296630 | Msa0588260 | -0.807458 | 5.005465e-50 | -8.615850e-47 |
| Msa0296630 | Msa0595170 | -0.834768 | 2.475698e-56 | -8.615850e-47 |
| Msa0296630 | Msa0610550 | -0.809424 | 1.905290e-50 | -8.615850e-47 |
| Msa0296630 | Msa0634890 | -0.814133 | 1.799092e-51 | -8.615850e-47 |
| Msa0296630 | Msa0665100 | -0.803512 | 3.365416e-49 | -8.615850e-47 |
| Msa0296630 | Msa0689440 | -0.818647 | 1.757486e-52 | -8.615850e-47 |
| Msa0296630 | Msa0693210 | -0.801971 | 7.001011e-49 | -8.615850e-47 |
| Msa0296630 | Msa0752700 | -0.818166 | 2.258882e-52 | -8.615850e-47 |
| Msa0296630 | Msa0794970 | -0.822333 | 2.505014e-53 | -8.615850e-47 |
| Msa0296630 | Msa0828590 | -0.817792 | 2.744214e-52 | -8.615850e-47 |
| Msa0296630 | Msa0831100 | -0.835488 | 1.629410e-56 | -8.615850e-47 |
| Msa0296630 | Msa0936480 | -0.804681 | 1.922419e-49 | -8.615850e-47 |
| Msa0296630 | Msa0944200 | -0.805418 | 1.348037e-49 | -8.615850e-47 |
| Msa0296630 | Msa0958000 | -0.833005 | 6.836874e-56 | -8.615850e-47 |
| Msa0296630 | Msa0980540 | -0.820464 | 6.763982e-53 | -8.615850e-47 |
| Msa0296630 | Msa0997430 | -0.802612 | 5.166297e-49 | -8.615850e-47 |
| Msa0296630 | Msa1021520 | -0.810966 | 8.863664e-51 | -8.615850e-47 |
| Msa0296630 | Msa1109780 | 0.809435 | 1.894648e-50 | -8.615850e-47 |
| Msa0296630 | Msa1126830 | -0.823519 | 1.326276e-53 | -8.615850e-47 |
| Msa0296630 | Msa1128280 | -0.804236 | 2.379590e-49 | -8.615850e-47 |
| Msa0296630 | Msa1158640 | 0.800570 | 1.354628e-48 | -8.615850e-47 |
| Msa0296630 | Msa1165270 | -0.806367 | 8.513014e-50 | -8.615850e-47 |
| Msa0296630 | Msa1165780 | -0.822655 | 2.109468e-53 | -8.615850e-47 |
| Msa0296630 | Msa1228040 | -0.805091 | 1.577674e-49 | -8.615850e-47 |
| Msa0296630 | Msa1258030 | 0.807571 | 4.735769e-50 | -8.615850e-47 |
| Msa0296630 | Msa1315890 | -0.812632 | 3.845358e-51 | -8.615850e-47 |
| Msa0296630 | Msa1365800 | -0.808955 | 2.401157e-50 | -8.615850e-47 |
| Msa0296630 | Msa1368530 | -0.809380 | 1.947473e-50 | -8.615850e-47 |
| Msa0296630 | Msa1411970 | -0.813032 | 3.142116e-51 | -8.615850e-47 |
| Msa0296630 | Msa1454680 | -0.822485 | 2.310497e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296630 | MtrunA17_Chr2g0319301 | 98.696 | 230 | 2 | 1 | 1 | 229 | 1 | 230 | 3.47e-168 | 462 |
| Msa0296630 | MtrunA17_Chr4g0042041 | 78.571 | 238 | 41 | 4 | 1 | 229 | 1 | 237 | 2.13e-125 | 354 |
| Msa0296630 | MtrunA17_Chr2g0323031 | 50.195 | 257 | 84 | 8 | 9 | 229 | 12 | 260 | 9.91e-73 | 222 |
| Msa0296630 | MtrunA17_Chr1g0167821 | 52.273 | 176 | 80 | 1 | 54 | 229 | 75 | 246 | 4.86e-58 | 184 |
| Msa0296630 | MtrunA17_Chr4g0038511 | 51.515 | 99 | 47 | 1 | 69 | 167 | 6 | 103 | 3.85e-23 | 94.4 |
| Msa0296630 | MtrunA17_Chr1g0161461 | 36.806 | 144 | 78 | 3 | 32 | 167 | 36 | 174 | 1.55e-19 | 85.9 |
| Msa0296630 | MtrunA17_Chr4g0060591 | 33.898 | 118 | 74 | 2 | 51 | 168 | 13 | 126 | 2.12e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0296630 | AT5G54680.1 | 69.787 | 235 | 64 | 5 | 1 | 229 | 1 | 234 | 2.27e-108 | 311 |
| Msa0296630 | AT1G51070.1 | 62.343 | 239 | 67 | 6 | 1 | 229 | 1 | 226 | 6.23e-95 | 277 |
| Msa0296630 | AT1G51070.2 | 65.829 | 199 | 57 | 4 | 36 | 229 | 100 | 292 | 3.20e-84 | 252 |
| Msa0296630 | AT4G14410.2 | 52.041 | 196 | 77 | 6 | 37 | 229 | 96 | 277 | 2.87e-55 | 178 |
| Msa0296630 | AT4G14410.3 | 52.041 | 196 | 77 | 6 | 37 | 229 | 96 | 277 | 2.87e-55 | 178 |
| Msa0296630 | AT4G14410.1 | 52.041 | 196 | 77 | 6 | 37 | 229 | 102 | 283 | 3.25e-55 | 178 |
| Msa0296630 | AT3G23210.2 | 52.261 | 199 | 87 | 5 | 35 | 229 | 97 | 291 | 5.16e-55 | 178 |
| Msa0296630 | AT3G23210.1 | 52.261 | 199 | 87 | 5 | 35 | 229 | 126 | 320 | 1.42e-54 | 177 |
| Msa0296630 | AT3G19860.1 | 45.299 | 117 | 59 | 2 | 66 | 178 | 2 | 117 | 1.27e-22 | 93.6 |
| Msa0296630 | AT3G19860.3 | 45.299 | 117 | 59 | 2 | 66 | 178 | 33 | 148 | 2.31e-22 | 93.6 |
| Msa0296630 | AT3G19860.2 | 45.299 | 117 | 59 | 2 | 66 | 178 | 55 | 170 | 2.45e-22 | 93.6 |
| Msa0296630 | AT4G36060.4 | 38.971 | 136 | 72 | 5 | 69 | 199 | 26 | 155 | 1.35e-18 | 82.4 |
| Msa0296630 | AT4G36060.2 | 39.706 | 136 | 71 | 5 | 69 | 199 | 26 | 155 | 2.37e-18 | 81.6 |
| Msa0296630 | AT4G36060.3 | 38.971 | 136 | 72 | 5 | 69 | 199 | 44 | 173 | 4.51e-18 | 81.3 |
| Msa0296630 | AT4G36060.1 | 39.706 | 136 | 71 | 5 | 69 | 199 | 44 | 173 | 4.88e-18 | 81.3 |
| Msa0296630 | AT3G47640.1 | 30.128 | 156 | 93 | 4 | 73 | 216 | 31 | 182 | 5.02e-12 | 63.9 |
| Msa0296630 | AT3G47640.3 | 30.128 | 156 | 93 | 4 | 73 | 216 | 31 | 182 | 5.02e-12 | 63.9 |
| Msa0296630 | AT3G47640.2 | 30.128 | 156 | 93 | 4 | 73 | 216 | 31 | 182 | 5.02e-12 | 63.9 |
Find 98 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTGAGTCTTTCAACTTT+TGG | 0.132451 | 2_3:-50037602 | None:intergenic |
| AGAGAAGATTAAAGAGTTAA+AGG | 0.137655 | 2_3:+50037635 | Msa0296630:CDS |
| TGAAAGGCATTAACTTGTTT+GGG | 0.247330 | 2_3:-50037978 | None:intergenic |
| ATGAAAGGCATTAACTTGTT+TGG | 0.257284 | 2_3:-50037979 | None:intergenic |
| AATTGTACGGTTGCGAATTT+AGG | 0.270777 | 2_3:-50038088 | None:intergenic |
| ATGGATAGGTTTGTTGAATT+AGG | 0.284956 | 2_3:+50037486 | Msa0296630:intron |
| GGGAAAATTCAACCCAACTA+TGG | 0.314333 | 2_3:+50036032 | Msa0296630:exon |
| CCGGCTTTAATATTTGTTGC+TGG | 0.318492 | 2_3:+50038284 | Msa0296630:three_prime_UTR |
| CTTGTTTGGCTGTCTTCTTC+CGG | 0.325700 | 2_3:+50038265 | Msa0296630:three_prime_UTR |
| TAAAAGTTAATAAGCTTGTT+TGG | 0.333347 | 2_3:+50038251 | Msa0296630:three_prime_UTR |
| ATACATAGTAAATAACTAAA+AGG | 0.343916 | 2_3:-50038165 | None:intergenic |
| AGGAGGGTGTGTCAAGAAAC+TGG | 0.351738 | 2_3:-50037920 | None:intergenic |
| ATGTGCTCCTTCCAGCTCTA+AGG | 0.373277 | 2_3:+50037324 | Msa0296630:CDS |
| CTGCTCCAACTTCTCCTTCT+CGG | 0.376719 | 2_3:-50037872 | None:intergenic |
| AACTAAAAGGAAAGAGTGTA+TGG | 0.377933 | 2_3:-50038152 | None:intergenic |
| GCATTAACTTGTTTGGGGCT+TGG | 0.383016 | 2_3:-50037972 | None:intergenic |
| CTCTGCTCCTAGTATTGAAA+TGG | 0.383024 | 2_3:+50036943 | Msa0296630:intron |
| GCAAATGCAGCAGGGATTGC+AGG | 0.388118 | 2_3:-50037940 | None:intergenic |
| AAGGAGCCATCGACAGAAAC+AGG | 0.397378 | 2_3:-50036108 | None:intergenic |
| CCGAATGGTGACACAGTTGC+GGG | 0.410732 | 2_3:+50037572 | Msa0296630:CDS |
| AAGTTGAAAGACTCAAATTC+AGG | 0.412450 | 2_3:+50037606 | Msa0296630:CDS |
| TGAAGAAGGACTTGTTTGTT+TGG | 0.426217 | 2_3:-50035894 | None:intergenic |
| CGGTTGCGAATTTAGGCAAC+TGG | 0.430606 | 2_3:-50038081 | None:intergenic |
| TACATAAAGAAACTTTCATT+AGG | 0.433731 | 2_3:-50038437 | None:intergenic |
| TGTTGAATTAGGCTCCATCT+TGG | 0.436518 | 2_3:+50037497 | Msa0296630:CDS |
| GAAGGAGAAGTTGGAGCAGC+AGG | 0.440680 | 2_3:+50037876 | Msa0296630:CDS |
| ATGCCTTTCATGAGTTATCC+AGG | 0.449494 | 2_3:+50037991 | Msa0296630:CDS |
| AATTGCCACATGGCAACTCC+TGG | 0.456430 | 2_3:-50038009 | None:intergenic |
| AAAATGAAAACCACGTTTGA+GGG | 0.462810 | 2_3:-50035865 | None:intergenic |
| TAAGGCCGAGAAGGAGAAGT+TGG | 0.463445 | 2_3:+50037867 | Msa0296630:CDS |
| CCCGCAACTGTGTCACCATT+CGG | 0.471915 | 2_3:-50037572 | None:intergenic |
| TGATGAGAAGCAGAGGCTTA+AGG | 0.479058 | 2_3:+50037849 | Msa0296630:CDS |
| AAATCTCATTTCTTCACCGC+CGG | 0.486690 | 2_3:+50035991 | Msa0296630:five_prime_UTR |
| TTTCCCCGGAAAACACCAAT+TGG | 0.488899 | 2_3:+50036055 | Msa0296630:CDS |
| GAGAGAAGTTGCGGAGGGAT+AGG | 0.490114 | 2_3:+50037353 | Msa0296630:CDS |
| CCTTGATGAGCAAATGCAGC+AGG | 0.490383 | 2_3:-50037949 | None:intergenic |
| AGTTACCTCTTCTTCGAACC+AGG | 0.496718 | 2_3:-50037004 | None:intergenic |
| TTCTTGTTGCAGAGGTAGAT+CGG | 0.503971 | 2_3:+50037297 | Msa0296630:intron |
| TCCGAATGGTGACACAGTTG+CGG | 0.503977 | 2_3:+50037571 | Msa0296630:CDS |
| TTAGGCTCCATCTTGGAGCC+TGG | 0.505934 | 2_3:+50037504 | Msa0296630:CDS |
| TGTGAGGTATCCACGGCGGC+TGG | 0.507559 | 2_3:-50038039 | None:intergenic |
| AGGAAAGAGTGTATGGGTAA+AGG | 0.511785 | 2_3:-50038145 | None:intergenic |
| GAAATTCCTGTTTCTGTCGA+TGG | 0.514909 | 2_3:+50036102 | Msa0296630:CDS |
| CAGGAATTTCATCAATCAAA+GGG | 0.518186 | 2_3:-50036089 | None:intergenic |
| GCCATTGGAGAGTTGAGGTG+GGG | 0.518653 | 2_3:-50036145 | None:intergenic |
| TTTCCGGGGAAACCATAGTT+GGG | 0.520904 | 2_3:-50036044 | None:intergenic |
| AGGGTAATCGAAAAGCCAAT+TGG | 0.523695 | 2_3:-50036070 | None:intergenic |
| CGCCATTGGAGAGTTGAGGT+GGG | 0.524275 | 2_3:-50036146 | None:intergenic |
| ACAGGAATTTCATCAATCAA+AGG | 0.524589 | 2_3:-50036090 | None:intergenic |
| GCTCCATCTTGGAGCCTGGA+AGG | 0.524851 | 2_3:+50037508 | Msa0296630:CDS |
| CTCTCGACATGCCTTAGAGC+TGG | 0.527575 | 2_3:-50037335 | None:intergenic |
| CAACCCAACTATGGTTTCCC+CGG | 0.528497 | 2_3:+50036041 | Msa0296630:exon |
| CCTGCTGCATTTGCTCATCA+AGG | 0.536277 | 2_3:+50037949 | Msa0296630:CDS |
| AATCTCATTTCTTCACCGCC+GGG | 0.536866 | 2_3:+50035992 | Msa0296630:five_prime_UTR |
| CACCTCAACTCTCCAATGGC+GGG | 0.541239 | 2_3:+50036148 | Msa0296630:CDS |
| GAGGTATCCACGGCGGCTGG+TGG | 0.543817 | 2_3:-50038036 | None:intergenic |
| GAGAGAGCGATGATTGAAGA+AGG | 0.545592 | 2_3:-50035908 | None:intergenic |
| CAAAATCAGATACCCGCCAT+TGG | 0.547933 | 2_3:-50036160 | None:intergenic |
| GCAGAGGCTTAAGGCCGAGA+AGG | 0.554322 | 2_3:+50037858 | Msa0296630:CDS |
| GTGTGTCAAGAAACTGGGTT+GGG | 0.557971 | 2_3:-50037914 | None:intergenic |
| TAAGCCTCTGCTTCTCATCA+CGG | 0.559176 | 2_3:-50037846 | None:intergenic |
| AAGAACCTGGTTCGAAGAAG+AGG | 0.561194 | 2_3:+50036999 | Msa0296630:CDS |
| CCAGCAACAAATATTAAAGC+CGG | 0.561728 | 2_3:-50038284 | None:intergenic |
| CCGCCATTGGAGAGTTGAGG+TGG | 0.568621 | 2_3:-50036147 | None:intergenic |
| GAAAGGCATTAACTTGTTTG+GGG | 0.569345 | 2_3:-50037977 | None:intergenic |
| CCATTGGAGAGTTGAGGTGG+GGG | 0.574009 | 2_3:-50036144 | None:intergenic |
| AGTACAGTAACATGTTACCT+TGG | 0.582067 | 2_3:+50038311 | Msa0296630:three_prime_UTR |
| AGGCCTTCCAGGCTCCAAGA+TGG | 0.582599 | 2_3:-50037511 | None:intergenic |
| AATGGATGATAGCTCTCTAG+TGG | 0.589069 | 2_3:+50036961 | Msa0296630:CDS |
| CGACATGCCTTAGAGCTGGA+AGG | 0.592843 | 2_3:-50037331 | None:intergenic |
| CCACCTCAACTCTCCAATGG+CGG | 0.595417 | 2_3:+50036147 | Msa0296630:CDS |
| ATTCATGCCACCAGCCGCCG+TGG | 0.596384 | 2_3:+50038029 | Msa0296630:CDS |
| AGGCATGTCGAGAGAAGTTG+CGG | 0.604709 | 2_3:+50037344 | Msa0296630:CDS |
| ATGATCTTGTGAGGTATCCA+CGG | 0.609314 | 2_3:-50038046 | None:intergenic |
| ACTCCTGGATAACTCATGAA+AGG | 0.613176 | 2_3:-50037994 | None:intergenic |
| TCTGATGGTATCAAAGAACC+TGG | 0.613566 | 2_3:+50036986 | Msa0296630:CDS |
| TTGCGAATTTAGGCAACTGG+TGG | 0.616090 | 2_3:-50038078 | None:intergenic |
| GAATTTAGGCAACTGGTGGA+CGG | 0.619427 | 2_3:-50038074 | None:intergenic |
| ACTAAAAGGAAAGAGTGTAT+GGG | 0.620179 | 2_3:-50038151 | None:intergenic |
| TACCCGCCATTGGAGAGTTG+AGG | 0.621755 | 2_3:-50036150 | None:intergenic |
| AACTCCGTGATGAGAAGCAG+AGG | 0.627738 | 2_3:+50037842 | Msa0296630:CDS |
| GGTGTGTCAAGAAACTGGGT+TGG | 0.631646 | 2_3:-50037915 | None:intergenic |
| AGCTCTCTAGTGGATTCTGA+TGG | 0.634077 | 2_3:+50036971 | Msa0296630:CDS |
| ATGGCTCCTTCGCCTTCACG+TGG | 0.638692 | 2_3:+50036121 | Msa0296630:CDS |
| CTTGATGAGCAAATGCAGCA+GGG | 0.642514 | 2_3:-50037948 | None:intergenic |
| AATGCAGCAGGGATTGCAGG+AGG | 0.644570 | 2_3:-50037937 | None:intergenic |
| ATGCAGCAGGGATTGCAGGA+GGG | 0.653807 | 2_3:-50037936 | None:intergenic |
| CATGTCGAGAGAAGTTGCGG+AGG | 0.656044 | 2_3:+50037347 | Msa0296630:CDS |
| ATGTCGAGAGAAGTTGCGGA+GGG | 0.659997 | 2_3:+50037348 | Msa0296630:CDS |
| TCTGATTGATGCTGTCCGAA+TGG | 0.662212 | 2_3:+50037557 | Msa0296630:CDS |
| TGGTGGCATGAATTGCCACA+TGG | 0.684045 | 2_3:-50038019 | None:intergenic |
| AAGGCCTCCTAAAACAGACA+AGG | 0.687344 | 2_3:+50037527 | Msa0296630:CDS |
| GGAGGGTGTGTCAAGAAACT+GGG | 0.689856 | 2_3:-50037919 | None:intergenic |
| GCCTCCTAAAACAGACAAGG+CGG | 0.693132 | 2_3:+50037530 | Msa0296630:CDS |
| ACGGAGTACATGATCTTGTG+AGG | 0.697745 | 2_3:-50038055 | None:intergenic |
| CGAATGGTGACACAGTTGCG+GGG | 0.732614 | 2_3:+50037573 | Msa0296630:CDS |
| GTTATCCAGGAGTTGCCATG+TGG | 0.743485 | 2_3:+50038004 | Msa0296630:CDS |
| ATCTTGTGAGGTATCCACGG+CGG | 0.745646 | 2_3:-50038043 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATTTGATAAAAAAAAAAA+TGG | + | chr2_3:50035934-50035953 | Msa0296630:five_prime_UTR | 10.0% |
| !! | AAGAAAAAATACAAAAATAT+GGG | - | chr2_3:50037282-50037301 | None:intergenic | 10.0% |
| !!! | TCTTTTTATGGTAATAAAAT+GGG | - | chr2_3:50035803-50035822 | None:intergenic | 15.0% |
| !!! | TTCTTTTTATGGTAATAAAA+TGG | - | chr2_3:50035804-50035823 | None:intergenic | 15.0% |
| !!! | AAAGTTTGAATTTTTAAACT+TGG | + | chr2_3:50036257-50036276 | Msa0296630:intron | 15.0% |
| !!! | AAGTTTGAATTTTTAAACTT+GGG | + | chr2_3:50036258-50036277 | Msa0296630:intron | 15.0% |
| !! | ACTTAGTAAATTAATACTAT+GGG | - | chr2_3:50036905-50036924 | None:intergenic | 15.0% |
| !! | AACTTAGTAAATTAATACTA+TGG | - | chr2_3:50036906-50036925 | None:intergenic | 15.0% |
| !! | CAAGAAAAAATACAAAAATA+TGG | - | chr2_3:50037283-50037302 | None:intergenic | 15.0% |
| !!! | AAATGAAATGATTTAGAATA+TGG | - | chr2_3:50037708-50037727 | None:intergenic | 15.0% |
| !! | ATACATAGTAAATAACTAAA+AGG | - | chr2_3:50038168-50038187 | None:intergenic | 15.0% |
| !!! | CTTTTTATGGTAATAAAATG+GGG | - | chr2_3:50035802-50035821 | None:intergenic | 20.0% |
| !! | TATCCACAAATTTGAAAAAA+GGG | - | chr2_3:50036220-50036239 | None:intergenic | 20.0% |
| !! | TTATCCACAAATTTGAAAAA+AGG | - | chr2_3:50036221-50036240 | None:intergenic | 20.0% |
| !!! | GTAGTTTTTATAAATTGTTG+TGG | + | chr2_3:50036305-50036324 | Msa0296630:intron | 20.0% |
| !! | AAATCGCTATAAATAAATTG+AGG | - | chr2_3:50037666-50037685 | None:intergenic | 20.0% |
| !! | TCAATATTTAGCGTTATATA+AGG | - | chr2_3:50037794-50037813 | None:intergenic | 20.0% |
| !!! | TAAAAGTTAATAAGCTTGTT+TGG | + | chr2_3:50038251-50038270 | Msa0296630:three_prime_UTR | 20.0% |
| !! | TACATAAAGAAACTTTCATT+AGG | - | chr2_3:50038440-50038459 | None:intergenic | 20.0% |
| ! | AAACCCTAAATTAAGAAAAG+GGG | - | chr2_3:50036186-50036205 | None:intergenic | 25.0% |
| ! | GAAACCCTAAATTAAGAAAA+GGG | - | chr2_3:50036187-50036206 | None:intergenic | 25.0% |
| ! | TGAAACCCTAAATTAAGAAA+AGG | - | chr2_3:50036188-50036207 | None:intergenic | 25.0% |
| ! | ATCCACAAATTTGAAAAAAG+GGG | - | chr2_3:50036219-50036238 | None:intergenic | 25.0% |
| !! | AAATTGTTGTGGTTTTCATT+TGG | + | chr2_3:50036316-50036335 | Msa0296630:intron | 25.0% |
| !! | TGTTATGTTTTGTGTACTTA+TGG | + | chr2_3:50036351-50036370 | Msa0296630:intron | 25.0% |
| !! | GACAAGTGTAATTTTTGAAT+TGG | + | chr2_3:50036423-50036442 | Msa0296630:intron | 25.0% |
| ! | AATTGATATGTGTTAAACAC+TGG | + | chr2_3:50036632-50036651 | Msa0296630:intron | 25.0% |
| ! | GTAAATTAATACTATGGGAT+GGG | - | chr2_3:50036900-50036919 | None:intergenic | 25.0% |
| ! | AGTAAATTAATACTATGGGA+TGG | - | chr2_3:50036901-50036920 | None:intergenic | 25.0% |
| ! | CTTGTTTAATGAGAAATGAA+AGG | - | chr2_3:50037041-50037060 | None:intergenic | 25.0% |
| ! | GTAATATAATTGAGGCAAAT+TGG | + | chr2_3:50037141-50037160 | Msa0296630:intron | 25.0% |
| ! | TCTTATAGTATACAAGCAAT+AGG | - | chr2_3:50037252-50037271 | None:intergenic | 25.0% |
| ! | ATAATAAAAGGCAAGATAGT+GGG | - | chr2_3:50037396-50037415 | None:intergenic | 25.0% |
| ! | AATAATAAAAGGCAAGATAG+TGG | - | chr2_3:50037397-50037416 | None:intergenic | 25.0% |
| ! | TGTAACTAATATGATTGACA+TGG | + | chr2_3:50037467-50037486 | Msa0296630:intron | 25.0% |
| !! | ATTTGAGTCTTTCAACTTTT+GGG | - | chr2_3:50037604-50037623 | None:intergenic | 25.0% |
| !! | AATTTGAGTCTTTCAACTTT+TGG | - | chr2_3:50037605-50037624 | None:intergenic | 25.0% |
| ! | AGAGAAGATTAAAGAGTTAA+AGG | + | chr2_3:50037635-50037654 | Msa0296630:CDS | 25.0% |
| !! | GATTTTCTTTATGACATAGA+AGG | + | chr2_3:50037681-50037700 | Msa0296630:intron | 25.0% |
| !!! | AATTTTTTGGGATTCCATTA+TGG | + | chr2_3:50038107-50038126 | Msa0296630:three_prime_UTR | 25.0% |
| AAAATGAAAACCACGTTTGA+GGG | - | chr2_3:50035868-50035887 | None:intergenic | 30.0% | |
| AAAAATGAAAACCACGTTTG+AGG | - | chr2_3:50035869-50035888 | None:intergenic | 30.0% | |
| CAGGAATTTCATCAATCAAA+GGG | - | chr2_3:50036092-50036111 | None:intergenic | 30.0% | |
| ACAGGAATTTCATCAATCAA+AGG | - | chr2_3:50036093-50036112 | None:intergenic | 30.0% | |
| ! | TTTGCCCCTTTTCTTAATTT+AGG | + | chr2_3:50036179-50036198 | Msa0296630:intron | 30.0% |
| ! | TTGCCCCTTTTCTTAATTTA+GGG | + | chr2_3:50036180-50036199 | Msa0296630:intron | 30.0% |
| ! | GTTTTGTGTACTTATGGTTA+TGG | + | chr2_3:50036357-50036376 | Msa0296630:intron | 30.0% |
| TTTGTAGTAGAACTTGAACT+AGG | + | chr2_3:50036384-50036403 | Msa0296630:intron | 30.0% | |
| !! | CCTAGTTTTCCATAATACAA+GGG | - | chr2_3:50036730-50036749 | None:intergenic | 30.0% |
| !! | TCCTAGTTTTCCATAATACA+AGG | - | chr2_3:50036731-50036750 | None:intergenic | 30.0% |
| AAGGAATTGCAACAGTAATT+GGG | - | chr2_3:50036815-50036834 | None:intergenic | 30.0% | |
| AAAGGAATTGCAACAGTAAT+TGG | - | chr2_3:50036816-50036835 | None:intergenic | 30.0% | |
| ! | ATTCCTTTACCTTGGATTTT+AGG | + | chr2_3:50036828-50036847 | Msa0296630:intron | 30.0% |
| AAACCTAAAATCCAAGGTAA+AGG | - | chr2_3:50036834-50036853 | None:intergenic | 30.0% | |
| !!! | TTACCTTGGATTTTAGGTTT+TGG | + | chr2_3:50036834-50036853 | Msa0296630:intron | 30.0% |
| AAACCAAAACCTAAAATCCA+AGG | - | chr2_3:50036840-50036859 | None:intergenic | 30.0% | |
| CTATCATCCATTTCAATACT+AGG | - | chr2_3:50036953-50036972 | None:intergenic | 30.0% | |
| !! | GCTTTGAGGTAATATAATTG+AGG | + | chr2_3:50037133-50037152 | Msa0296630:intron | 30.0% |
| TGAATATAATTAGCGATAGC+AGG | + | chr2_3:50037186-50037205 | Msa0296630:intron | 30.0% | |
| ! | TTTTTATTGATGCCACTGAA+CGG | - | chr2_3:50037214-50037233 | None:intergenic | 30.0% |
| !!! | TGTATTTTTTCTTGTTGCAG+AGG | + | chr2_3:50037289-50037308 | Msa0296630:intron | 30.0% |
| TAATAAAAGGCAAGATAGTG+GGG | - | chr2_3:50037395-50037414 | None:intergenic | 30.0% | |
| AAGAGGAGAGGAATAATAAA+AGG | - | chr2_3:50037408-50037427 | None:intergenic | 30.0% | |
| TTATTCCTCTCCTCTTTATT+CGG | + | chr2_3:50037412-50037431 | Msa0296630:intron | 30.0% | |
| CTAATATGATTGACATGGAT+AGG | + | chr2_3:50037472-50037491 | Msa0296630:intron | 30.0% | |
| !! | ATGGATAGGTTTGTTGAATT+AGG | + | chr2_3:50037486-50037505 | Msa0296630:intron | 30.0% |
| AAGTTGAAAGACTCAAATTC+AGG | + | chr2_3:50037606-50037625 | Msa0296630:CDS | 30.0% | |
| AGATTAAAGAGTTAAAGGTG+AGG | + | chr2_3:50037640-50037659 | Msa0296630:intron | 30.0% | |
| ATATTGAATTCTGTCTACTC+AGG | + | chr2_3:50037807-50037826 | Msa0296630:intron | 30.0% | |
| !! | TGAAAGGCATTAACTTGTTT+GGG | - | chr2_3:50037981-50038000 | None:intergenic | 30.0% |
| !! | ATGAAAGGCATTAACTTGTT+TGG | - | chr2_3:50037982-50038001 | None:intergenic | 30.0% |
| TGGAATCCCAAAAAATTGTA+CGG | - | chr2_3:50038104-50038123 | None:intergenic | 30.0% | |
| ! | ATACAACTTTTAGGCCATAA+TGG | - | chr2_3:50038124-50038143 | None:intergenic | 30.0% |
| ! | GGTAAAGGAATACAACTTTT+AGG | - | chr2_3:50038133-50038152 | None:intergenic | 30.0% |
| ! | ACTAAAAGGAAAGAGTGTAT+GGG | - | chr2_3:50038154-50038173 | None:intergenic | 30.0% |
| ! | AACTAAAAGGAAAGAGTGTA+TGG | - | chr2_3:50038155-50038174 | None:intergenic | 30.0% |
| ! | AGTTTTTGTGAACTAAACCA+AGG | - | chr2_3:50038331-50038350 | None:intergenic | 30.0% |
| ! | TGAAGAAGGACTTGTTTGTT+TGG | - | chr2_3:50035897-50035916 | None:intergenic | 35.0% |
| ! | AAAATTGTGAATTTTCCCGG+CGG | - | chr2_3:50036010-50036029 | None:intergenic | 35.0% |
| ! | CGGAAAATTGTGAATTTTCC+CGG | - | chr2_3:50036013-50036032 | None:intergenic | 35.0% |
| ! | CGGGAAAATTCACAATTTTC+CGG | + | chr2_3:50036011-50036030 | Msa0296630:five_prime_UTR | 35.0% |
| ! | GGGAAAATTCACAATTTTCC+GGG | + | chr2_3:50036012-50036031 | Msa0296630:five_prime_UTR | 35.0% |
| !!! | ATAGTTGGGTTGAATTTTCC+CGG | - | chr2_3:50036033-50036052 | None:intergenic | 35.0% |
| !! | AAAAGCCAATTGGTGTTTTC+CGG | - | chr2_3:50036063-50036082 | None:intergenic | 35.0% |
| !!! | TGCCCCTTTTTTCAAATTTG+TGG | + | chr2_3:50036214-50036233 | Msa0296630:intron | 35.0% |
| TTGTGTACTTATGGTTATGG+TGG | + | chr2_3:50036360-50036379 | Msa0296630:intron | 35.0% | |
| TAGTAGAACTTGAACTAGGA+TGG | + | chr2_3:50036388-50036407 | Msa0296630:intron | 35.0% | |
| TGTTCTTGAATCTTCTGTTC+TGG | + | chr2_3:50036456-50036475 | Msa0296630:intron | 35.0% | |
| CCCTTGTATTATGGAAAACT+AGG | + | chr2_3:50036727-50036746 | Msa0296630:intron | 35.0% | |
| AGGAATTGCAACAGTAATTG+GGG | - | chr2_3:50036814-50036833 | None:intergenic | 35.0% | |
| TCAACTAACTTACAGCTTTG+AGG | + | chr2_3:50037119-50037138 | Msa0296630:intron | 35.0% | |
| GGCAAATTGGCAATTTAACA+TGG | + | chr2_3:50037154-50037173 | Msa0296630:intron | 35.0% | |
| ACAAGCAATAGGATTTGTCA+GGG | - | chr2_3:50037241-50037260 | None:intergenic | 35.0% | |
| TACAAGCAATAGGATTTGTC+AGG | - | chr2_3:50037242-50037261 | None:intergenic | 35.0% | |
| TTCTCTGTAGACTGTGTATT+TGG | + | chr2_3:50037440-50037459 | Msa0296630:intron | 35.0% | |
| TCTCTGTAGACTGTGTATTT+GGG | + | chr2_3:50037441-50037460 | Msa0296630:intron | 35.0% | |
| AGCGTTATATAAGGTCAATC+TGG | - | chr2_3:50037785-50037804 | None:intergenic | 35.0% | |
| !! | GAAAGGCATTAACTTGTTTG+GGG | - | chr2_3:50037980-50037999 | None:intergenic | 35.0% |
| AATTGTACGGTTGCGAATTT+AGG | - | chr2_3:50038091-50038110 | None:intergenic | 35.0% | |
| !!! | TTCGCAACCGTACAATTTTT+TGG | + | chr2_3:50038094-50038113 | Msa0296630:three_prime_UTR | 35.0% |
| !!! | TCGCAACCGTACAATTTTTT+GGG | + | chr2_3:50038095-50038114 | Msa0296630:three_prime_UTR | 35.0% |
| CCAGCAACAAATATTAAAGC+CGG | - | chr2_3:50038287-50038306 | None:intergenic | 35.0% | |
| AGTACAGTAACATGTTACCT+TGG | + | chr2_3:50038311-50038330 | Msa0296630:three_prime_UTR | 35.0% | |
| GAGGGTAGAGAAAAAAAGAG+CGG | - | chr2_3:50035850-50035869 | None:intergenic | 40.0% | |
| ! | TTTTTCTCTACCCTCAAACG+TGG | + | chr2_3:50035855-50035874 | Msa0296630:five_prime_UTR | 40.0% |
| AAATCTCATTTCTTCACCGC+CGG | + | chr2_3:50035991-50036010 | Msa0296630:five_prime_UTR | 40.0% | |
| GGGAAAATTCAACCCAACTA+TGG | + | chr2_3:50036032-50036051 | Msa0296630:exon | 40.0% | |
| !! | AAAGCCAATTGGTGTTTTCC+GGG | - | chr2_3:50036062-50036081 | None:intergenic | 40.0% |
| AGGGTAATCGAAAAGCCAAT+TGG | - | chr2_3:50036073-50036092 | None:intergenic | 40.0% | |
| !! | GAAATTCCTGTTTCTGTCGA+TGG | + | chr2_3:50036102-50036121 | Msa0296630:CDS | 40.0% |
| ! | ATCTTCTGTTCTGGATACGT+TGG | + | chr2_3:50036465-50036484 | Msa0296630:intron | 40.0% |
| ACATACACGAACACAAGACA+CGG | + | chr2_3:50036542-50036561 | Msa0296630:intron | 40.0% | |
| AACCTGCATCCCTTGTATTA+TGG | + | chr2_3:50036718-50036737 | Msa0296630:intron | 40.0% | |
| TTCCATAATACAAGGGATGC+AGG | - | chr2_3:50036723-50036742 | None:intergenic | 40.0% | |
| CTGTTGCAATTCCTTTACCT+TGG | + | chr2_3:50036820-50036839 | Msa0296630:intron | 40.0% | |
| ! | CTCTGCTCCTAGTATTGAAA+TGG | + | chr2_3:50036943-50036962 | Msa0296630:intron | 40.0% |
| AATGGATGATAGCTCTCTAG+TGG | + | chr2_3:50036961-50036980 | Msa0296630:CDS | 40.0% | |
| TCTGATGGTATCAAAGAACC+TGG | + | chr2_3:50036986-50037005 | Msa0296630:CDS | 40.0% | |
| TTCTTGTTGCAGAGGTAGAT+CGG | + | chr2_3:50037297-50037316 | Msa0296630:intron | 40.0% | |
| CTCTGTAGACTGTGTATTTG+GGG | + | chr2_3:50037442-50037461 | Msa0296630:intron | 40.0% | |
| TGTTGAATTAGGCTCCATCT+TGG | + | chr2_3:50037497-50037516 | Msa0296630:CDS | 40.0% | |
| !! | ACTGATACGACAAAGTACTG+CGG | - | chr2_3:50037752-50037771 | None:intergenic | 40.0% |
| ATGCCTTTCATGAGTTATCC+AGG | + | chr2_3:50037991-50038010 | Msa0296630:CDS | 40.0% | |
| ACTCCTGGATAACTCATGAA+AGG | - | chr2_3:50037997-50038016 | None:intergenic | 40.0% | |
| ! | ATGATCTTGTGAGGTATCCA+CGG | - | chr2_3:50038049-50038068 | None:intergenic | 40.0% |
| ! | AGGAAAGAGTGTATGGGTAA+AGG | - | chr2_3:50038148-50038167 | None:intergenic | 40.0% |
| ! | CCGGCTTTAATATTTGTTGC+TGG | + | chr2_3:50038284-50038303 | Msa0296630:three_prime_UTR | 40.0% |
| GAGAGAGCGATGATTGAAGA+AGG | - | chr2_3:50035911-50035930 | None:intergenic | 45.0% | |
| AATCTCATTTCTTCACCGCC+GGG | + | chr2_3:50035992-50036011 | Msa0296630:five_prime_UTR | 45.0% | |
| TTTCCGGGGAAACCATAGTT+GGG | - | chr2_3:50036047-50036066 | None:intergenic | 45.0% | |
| ! | TTTTCCGGGGAAACCATAGT+TGG | - | chr2_3:50036048-50036067 | None:intergenic | 45.0% |
| TTTCCCCGGAAAACACCAAT+TGG | + | chr2_3:50036055-50036074 | Msa0296630:CDS | 45.0% | |
| !! | AAGCCAATTGGTGTTTTCCG+GGG | - | chr2_3:50036061-50036080 | None:intergenic | 45.0% |
| CAAAATCAGATACCCGCCAT+TGG | - | chr2_3:50036163-50036182 | None:intergenic | 45.0% | |
| ! | TTCTGTTCTGGATACGTTGG+TGG | + | chr2_3:50036468-50036487 | Msa0296630:intron | 45.0% |
| ! | TCTGTTCTGGATACGTTGGT+GGG | + | chr2_3:50036469-50036488 | Msa0296630:intron | 45.0% |
| ACACAGCATGTGTCAGTGTT+GGG | + | chr2_3:50036609-50036628 | Msa0296630:intron | 45.0% | |
| ! | CTGAAGTGTCAGTGCTACAT+AGG | + | chr2_3:50036668-50036687 | Msa0296630:intron | 45.0% |
| CAATTTGCACGAGCAGCTTA+AGG | - | chr2_3:50036696-50036715 | None:intergenic | 45.0% | |
| !! | AGCTCTCTAGTGGATTCTGA+TGG | + | chr2_3:50036971-50036990 | Msa0296630:CDS | 45.0% |
| ! | AAGAACCTGGTTCGAAGAAG+AGG | + | chr2_3:50036999-50037018 | Msa0296630:CDS | 45.0% |
| AGTTACCTCTTCTTCGAACC+AGG | - | chr2_3:50037007-50037026 | None:intergenic | 45.0% | |
| TTCCTCTCCTCTTTATTCGG+TGG | + | chr2_3:50037415-50037434 | Msa0296630:intron | 45.0% | |
| TCCTCTCCTCTTTATTCGGT+GGG | + | chr2_3:50037416-50037435 | Msa0296630:intron | 45.0% | |
| GAGAAACCCACCGAATAAAG+AGG | - | chr2_3:50037425-50037444 | None:intergenic | 45.0% | |
| AAGGCCTCCTAAAACAGACA+AGG | + | chr2_3:50037527-50037546 | Msa0296630:CDS | 45.0% | |
| ! | ATTGCCGCCTTGTCTGTTTT+AGG | - | chr2_3:50037537-50037556 | None:intergenic | 45.0% |
| TCTGATTGATGCTGTCCGAA+TGG | + | chr2_3:50037557-50037576 | Msa0296630:CDS | 45.0% | |
| TAAGCCTCTGCTTCTCATCA+CGG | - | chr2_3:50037849-50037868 | None:intergenic | 45.0% | |
| TGATGAGAAGCAGAGGCTTA+AGG | + | chr2_3:50037849-50037868 | Msa0296630:CDS | 45.0% | |
| GTGTGTCAAGAAACTGGGTT+GGG | - | chr2_3:50037917-50037936 | None:intergenic | 45.0% | |
| CTTGATGAGCAAATGCAGCA+GGG | - | chr2_3:50037951-50037970 | None:intergenic | 45.0% | |
| !! | GCATTAACTTGTTTGGGGCT+TGG | - | chr2_3:50037975-50037994 | None:intergenic | 45.0% |
| ACGGAGTACATGATCTTGTG+AGG | - | chr2_3:50038058-50038077 | None:intergenic | 45.0% | |
| GAATTTAGGCAACTGGTGGA+CGG | - | chr2_3:50038077-50038096 | None:intergenic | 45.0% | |
| TTGCGAATTTAGGCAACTGG+TGG | - | chr2_3:50038081-50038100 | None:intergenic | 45.0% | |
| CTTGTTTGGCTGTCTTCTTC+CGG | + | chr2_3:50038265-50038284 | Msa0296630:three_prime_UTR | 45.0% | |
| !!! | TTTTTAATAATTTCTTTTTA+TGG | - | chr2_3:50035815-50035834 | None:intergenic | 5.0% |
| CAACCCAACTATGGTTTCCC+CGG | + | chr2_3:50036041-50036060 | Msa0296630:exon | 50.0% | |
| AAGGAGCCATCGACAGAAAC+AGG | - | chr2_3:50036111-50036130 | None:intergenic | 50.0% | |
| GACACAGCATGTGTCAGTGT+TGG | + | chr2_3:50036608-50036627 | Msa0296630:intron | 50.0% | |
| ATGTGCTCCTTCCAGCTCTA+AGG | + | chr2_3:50037324-50037343 | Msa0296630:CDS | 50.0% | |
| AGGCATGTCGAGAGAAGTTG+CGG | + | chr2_3:50037344-50037363 | Msa0296630:CDS | 50.0% | |
| ATGTCGAGAGAAGTTGCGGA+GGG | + | chr2_3:50037348-50037367 | Msa0296630:CDS | 50.0% | |
| ACCCACCGAATAAAGAGGAG+AGG | - | chr2_3:50037420-50037439 | None:intergenic | 50.0% | |
| !!! | TCTGTTTTAGGAGGCCTTCC+AGG | - | chr2_3:50037525-50037544 | None:intergenic | 50.0% |
| GCCTCCTAAAACAGACAAGG+CGG | + | chr2_3:50037530-50037549 | Msa0296630:CDS | 50.0% | |
| TCCGAATGGTGACACAGTTG+CGG | + | chr2_3:50037571-50037590 | Msa0296630:CDS | 50.0% | |
| AACTCCGTGATGAGAAGCAG+AGG | + | chr2_3:50037842-50037861 | Msa0296630:CDS | 50.0% | |
| TAAGGCCGAGAAGGAGAAGT+TGG | + | chr2_3:50037867-50037886 | Msa0296630:CDS | 50.0% | |
| CTGCTCCAACTTCTCCTTCT+CGG | - | chr2_3:50037875-50037894 | None:intergenic | 50.0% | |
| GGTGTGTCAAGAAACTGGGT+TGG | - | chr2_3:50037918-50037937 | None:intergenic | 50.0% | |
| ! | GGAGGGTGTGTCAAGAAACT+GGG | - | chr2_3:50037922-50037941 | None:intergenic | 50.0% |
| ! | AGGAGGGTGTGTCAAGAAAC+TGG | - | chr2_3:50037923-50037942 | None:intergenic | 50.0% |
| CCTTGATGAGCAAATGCAGC+AGG | - | chr2_3:50037952-50037971 | None:intergenic | 50.0% | |
| CCTGCTGCATTTGCTCATCA+AGG | + | chr2_3:50037949-50037968 | Msa0296630:CDS | 50.0% | |
| GTTATCCAGGAGTTGCCATG+TGG | + | chr2_3:50038004-50038023 | Msa0296630:CDS | 50.0% | |
| AATTGCCACATGGCAACTCC+TGG | - | chr2_3:50038012-50038031 | None:intergenic | 50.0% | |
| TGGTGGCATGAATTGCCACA+TGG | - | chr2_3:50038022-50038041 | None:intergenic | 50.0% | |
| ! | ATCTTGTGAGGTATCCACGG+CGG | - | chr2_3:50038046-50038065 | None:intergenic | 50.0% |
| CGGTTGCGAATTTAGGCAAC+TGG | - | chr2_3:50038084-50038103 | None:intergenic | 50.0% | |
| CCATTGGAGAGTTGAGGTGG+GGG | - | chr2_3:50036147-50036166 | None:intergenic | 55.0% | |
| GCCATTGGAGAGTTGAGGTG+GGG | - | chr2_3:50036148-50036167 | None:intergenic | 55.0% | |
| CGCCATTGGAGAGTTGAGGT+GGG | - | chr2_3:50036149-50036168 | None:intergenic | 55.0% | |
| CCACCTCAACTCTCCAATGG+CGG | + | chr2_3:50036147-50036166 | Msa0296630:CDS | 55.0% | |
| CACCTCAACTCTCCAATGGC+GGG | + | chr2_3:50036148-50036167 | Msa0296630:CDS | 55.0% | |
| TACCCGCCATTGGAGAGTTG+AGG | - | chr2_3:50036153-50036172 | None:intergenic | 55.0% | |
| CGACATGCCTTAGAGCTGGA+AGG | - | chr2_3:50037334-50037353 | None:intergenic | 55.0% | |
| CTCTCGACATGCCTTAGAGC+TGG | - | chr2_3:50037338-50037357 | None:intergenic | 55.0% | |
| CATGTCGAGAGAAGTTGCGG+AGG | + | chr2_3:50037347-50037366 | Msa0296630:CDS | 55.0% | |
| GAGAGAAGTTGCGGAGGGAT+AGG | + | chr2_3:50037353-50037372 | Msa0296630:CDS | 55.0% | |
| TTAGGCTCCATCTTGGAGCC+TGG | + | chr2_3:50037504-50037523 | Msa0296630:CDS | 55.0% | |
| !! | GCCGCCTTGTCTGTTTTAGG+AGG | - | chr2_3:50037534-50037553 | None:intergenic | 55.0% |
| CCCGCAACTGTGTCACCATT+CGG | - | chr2_3:50037575-50037594 | None:intergenic | 55.0% | |
| CCGAATGGTGACACAGTTGC+GGG | + | chr2_3:50037572-50037591 | Msa0296630:CDS | 55.0% | |
| CGAATGGTGACACAGTTGCG+GGG | + | chr2_3:50037573-50037592 | Msa0296630:CDS | 55.0% | |
| GAAGGAGAAGTTGGAGCAGC+AGG | + | chr2_3:50037876-50037895 | Msa0296630:CDS | 55.0% | |
| ATGCAGCAGGGATTGCAGGA+GGG | - | chr2_3:50037939-50037958 | None:intergenic | 55.0% | |
| AATGCAGCAGGGATTGCAGG+AGG | - | chr2_3:50037940-50037959 | None:intergenic | 55.0% | |
| GCAAATGCAGCAGGGATTGC+AGG | - | chr2_3:50037943-50037962 | None:intergenic | 55.0% | |
| ATGGCTCCTTCGCCTTCACG+TGG | + | chr2_3:50036121-50036140 | Msa0296630:CDS | 60.0% | |
| CCCCCACCTCAACTCTCCAA+TGG | + | chr2_3:50036144-50036163 | Msa0296630:CDS | 60.0% | |
| CCGCCATTGGAGAGTTGAGG+TGG | - | chr2_3:50036150-50036169 | None:intergenic | 60.0% | |
| CGATAGCAGGCTCCGTTCAG+TGG | + | chr2_3:50037199-50037218 | Msa0296630:intron | 60.0% | |
| GCTCCATCTTGGAGCCTGGA+AGG | + | chr2_3:50037508-50037527 | Msa0296630:CDS | 60.0% | |
| AGGCCTTCCAGGCTCCAAGA+TGG | - | chr2_3:50037514-50037533 | None:intergenic | 60.0% | |
| GCAGAGGCTTAAGGCCGAGA+AGG | + | chr2_3:50037858-50037877 | Msa0296630:CDS | 60.0% | |
| TTGAGGTGGGGGCCACGTGA+AGG | - | chr2_3:50036136-50036155 | None:intergenic | 65.0% | |
| ATTCATGCCACCAGCCGCCG+TGG | + | chr2_3:50038029-50038048 | Msa0296630:CDS | 65.0% | |
| ! | TGTGAGGTATCCACGGCGGC+TGG | - | chr2_3:50038042-50038061 | None:intergenic | 65.0% |
| TGGGGGCCACGTGAAGGCGA+AGG | - | chr2_3:50036130-50036149 | None:intergenic | 70.0% | |
| ! | GAGGTATCCACGGCGGCTGG+TGG | - | chr2_3:50038039-50038058 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 50035773 | 50038472 | 50035773 | ID=Msa0296630;Name=Msa0296630 |
| chr2_3 | mRNA | 50035773 | 50038472 | 50035773 | ID=Msa0296630-mRNA-1;Parent=Msa0296630;Name=Msa0296630-mRNA-1;_AED=0.03;_eAED=0.03;_QI=278|1|1|1|1|1|5|380|229 |
| chr2_3 | exon | 50035773 | 50036169 | 50035773 | ID=Msa0296630-mRNA-1:exon:15691;Parent=Msa0296630-mRNA-1 |
| chr2_3 | exon | 50036955 | 50037020 | 50036955 | ID=Msa0296630-mRNA-1:exon:15692;Parent=Msa0296630-mRNA-1 |
| chr2_3 | exon | 50037309 | 50037386 | 50037309 | ID=Msa0296630-mRNA-1:exon:15693;Parent=Msa0296630-mRNA-1 |
| chr2_3 | exon | 50037494 | 50037656 | 50037494 | ID=Msa0296630-mRNA-1:exon:15694;Parent=Msa0296630-mRNA-1 |
| chr2_3 | exon | 50037829 | 50038472 | 50037829 | ID=Msa0296630-mRNA-1:exon:15695;Parent=Msa0296630-mRNA-1 |
| chr2_3 | five_prime_UTR | 50035773 | 50036050 | 50035773 | ID=Msa0296630-mRNA-1:five_prime_utr;Parent=Msa0296630-mRNA-1 |
| chr2_3 | CDS | 50036051 | 50036169 | 50036051 | ID=Msa0296630-mRNA-1:cds;Parent=Msa0296630-mRNA-1 |
| chr2_3 | CDS | 50036955 | 50037020 | 50036955 | ID=Msa0296630-mRNA-1:cds;Parent=Msa0296630-mRNA-1 |
| chr2_3 | CDS | 50037309 | 50037386 | 50037309 | ID=Msa0296630-mRNA-1:cds;Parent=Msa0296630-mRNA-1 |
| chr2_3 | CDS | 50037494 | 50037656 | 50037494 | ID=Msa0296630-mRNA-1:cds;Parent=Msa0296630-mRNA-1 |
| chr2_3 | CDS | 50037829 | 50038092 | 50037829 | ID=Msa0296630-mRNA-1:cds;Parent=Msa0296630-mRNA-1 |
| chr2_3 | three_prime_UTR | 50038093 | 50038472 | 50038093 | ID=Msa0296630-mRNA-1:three_prime_utr;Parent=Msa0296630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
