AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1398120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1398120 MtrunA17_Chr5g0397831 98.729 236 3 0 1 236 1 236 9.14e-173 474
Msa1398120 MtrunA17_Chr8g0386341 55.508 236 92 3 3 236 24 248 3.96e-91 268
Msa1398120 MtrunA17_Chr5g0397821 57.477 214 82 1 23 236 21 225 4.43e-89 263
Msa1398120 MtrunA17_Chr5g0428801 39.147 258 127 7 1 236 1 250 5.90e-55 178
Msa1398120 MtrunA17_Chr3g0142781 42.570 249 114 8 9 236 9 249 8.38e-53 173
Msa1398120 MtrunA17_Chr1g0156711 41.200 250 118 8 8 235 3 245 4.50e-51 169
Msa1398120 MtrunA17_Chr5g0424221 42.460 252 115 9 1 235 1 239 9.40e-51 166
Msa1398120 MtrunA17_Chr8g0352471 40.392 255 125 9 1 236 1 247 2.06e-50 167
Msa1398120 MtrunA17_Chr8g0371771 41.525 236 119 8 11 235 16 243 5.33e-50 165
Msa1398120 MtrunA17_Chr8g0351851 39.600 250 121 9 3 235 1 237 3.52e-49 161
Msa1398120 MtrunA17_Chr8g0357311 38.911 257 126 9 1 236 1 247 7.51e-49 161
Msa1398120 MtrunA17_Chr5g0405611 40.586 239 121 10 9 236 80 308 3.83e-48 162
Msa1398120 MtrunA17_Chr8g0371781 42.324 241 107 8 19 235 21 253 3.84e-48 160
Msa1398120 MtrunA17_Chr8g0392961 39.921 253 124 8 2 236 3 245 5.79e-48 158
Msa1398120 MtrunA17_Chr1g0154591 41.558 231 110 7 23 236 10 232 3.26e-47 156
Msa1398120 MtrunA17_Chr5g0405581 38.610 259 128 9 1 236 1 251 5.36e-47 157
Msa1398120 MtrunA17_Chr6g0482741 38.340 253 123 10 4 236 1 240 7.28e-47 155
Msa1398120 MtrunA17_Chr3g0141341 39.827 231 114 8 23 236 9 231 1.92e-46 154
Msa1398120 MtrunA17_Chr7g0239131 36.694 248 132 8 6 236 3 242 3.40e-46 154
Msa1398120 MtrunA17_Chr3g0112091 36.885 244 128 9 11 236 2 237 6.02e-46 153
Msa1398120 MtrunA17_Chr4g0037331 38.956 249 128 10 1 235 1 239 1.04e-45 155
Msa1398120 MtrunA17_Chr4g0037351 38.710 248 122 9 11 236 9 248 1.22e-45 154
Msa1398120 MtrunA17_Chr8g0386351 46.914 162 79 3 1 161 43 198 1.47e-45 151
Msa1398120 MtrunA17_Chr2g0312181 37.200 250 132 7 5 236 1 243 2.20e-44 149
Msa1398120 MtrunA17_Chr1g0180161 37.719 228 116 8 27 236 23 242 5.10e-43 146
Msa1398120 MtrunA17_Chr2g0311561 38.136 236 119 9 20 236 5 232 1.77e-42 145
Msa1398120 MtrunA17_Chr2g0311521 40.984 244 111 11 15 236 15 247 2.54e-41 150
Msa1398120 MtrunA17_Chr1g0180121 37.008 254 130 10 1 236 1 242 4.68e-41 140
Msa1398120 MtrunA17_Chr7g0265011 34.252 254 140 9 1 236 43 287 8.07e-41 141
Msa1398120 MtrunA17_Chr1g0180231 35.857 251 134 9 4 236 1 242 2.68e-39 136
Msa1398120 MtrunA17_Chr1g0179871 35.857 251 134 9 4 236 1 242 2.68e-39 136
Msa1398120 MtrunA17_Chr1g0179851 37.719 228 116 8 27 236 20 239 3.97e-39 135
Msa1398120 MtrunA17_Chr1g0179891 36.752 234 122 8 21 236 12 237 4.33e-39 135
Msa1398120 MtrunA17_Chr1g0180221 34.902 255 139 9 1 236 36 282 3.75e-38 134
Msa1398120 MtrunA17_Chr4g0031221 33.471 242 134 8 14 235 17 251 2.28e-37 131
Msa1398120 MtrunA17_Chr2g0311551 40.506 237 112 10 20 236 17 244 2.33e-37 138
Msa1398120 MtrunA17_Chr6g0452331 34.231 260 139 11 1 236 1 252 3.79e-36 128
Msa1398120 MtrunA17_Chr2g0311531 40.000 215 108 8 25 236 26 222 3.49e-35 125
Msa1398120 MtrunA17_Chr2g0311501 39.247 186 92 9 64 236 5 182 2.92e-27 103
Msa1398120 MtrunA17_Chr1g0179911 29.084 251 144 9 3 236 5 238 2.80e-26 102
Msa1398120 MtrunA17_Chr5g0406771 37.037 162 82 6 28 169 15 176 1.48e-23 93.2
Msa1398120 MtrunA17_Chr2g0309611 27.149 221 136 8 30 234 38 249 1.51e-17 79.0
Msa1398120 MtrunA17_Chr1g0180181 42.045 88 39 2 155 236 18 99 2.59e-15 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1398120 AT4G11650.1 57.456 228 87 2 9 236 6 223 1.44e-95 280
Msa1398120 AT1G75050.1 42.105 247 118 7 7 236 5 243 1.01e-53 173
Msa1398120 AT1G75040.1 42.623 244 117 7 7 236 5 239 2.94e-53 172
Msa1398120 AT1G75800.1 42.169 249 113 8 11 236 8 248 4.33e-53 174
Msa1398120 AT1G75030.1 40.486 247 122 7 7 236 5 243 7.05e-53 171
Msa1398120 AT4G38670.3 39.370 254 125 9 5 236 1 247 1.18e-50 166
Msa1398120 AT4G38670.1 39.370 254 125 9 5 236 1 247 1.18e-50 166
Msa1398120 AT1G19320.1 39.764 254 126 8 1 235 1 246 8.28e-50 163
Msa1398120 AT2G17860.1 41.897 253 115 9 8 236 5 249 9.46e-50 163
Msa1398120 AT1G77700.2 41.841 239 116 8 9 235 44 271 1.18e-49 165
Msa1398120 AT1G77700.3 41.841 239 116 8 9 235 44 271 1.65e-49 165
Msa1398120 AT4G36010.1 44.444 234 97 9 28 236 25 250 1.14e-48 162
Msa1398120 AT4G36010.2 44.444 234 97 9 28 236 25 250 1.14e-48 162
Msa1398120 AT4G38660.1 39.184 245 126 9 6 236 10 245 2.45e-48 162
Msa1398120 AT4G38670.2 40.756 238 113 8 20 236 1 231 7.41e-48 159
Msa1398120 AT1G77700.1 42.478 226 107 8 22 235 85 299 8.59e-48 161
Msa1398120 AT1G20030.1 40.260 231 109 7 28 236 5 228 1.19e-47 159
Msa1398120 AT4G38660.2 42.601 223 105 9 28 236 10 223 1.21e-47 160
Msa1398120 AT1G20030.2 40.260 231 109 7 28 236 22 245 1.49e-47 159
Msa1398120 AT5G24620.1 37.698 252 124 9 9 236 9 251 6.51e-46 158
Msa1398120 AT5G38280.1 37.097 248 127 7 11 236 10 250 9.23e-46 161
Msa1398120 AT5G24620.4 37.698 252 124 9 9 236 64 306 9.52e-46 159
Msa1398120 AT5G24620.3 37.698 252 124 9 9 236 85 327 1.01e-45 159
Msa1398120 AT5G38280.2 37.097 248 127 7 11 236 10 250 1.15e-45 161
Msa1398120 AT1G73620.1 38.362 232 115 8 23 236 39 260 1.04e-42 145
Msa1398120 AT1G18250.2 37.931 232 118 7 22 236 18 240 1.88e-42 144
Msa1398120 AT1G18250.1 38.095 231 117 7 23 236 18 239 1.89e-42 144
Msa1398120 AT4G24180.5 34.601 263 126 11 4 236 5 251 4.56e-42 144
Msa1398120 AT4G24180.6 35.827 254 118 10 12 236 19 256 9.37e-42 143
Msa1398120 AT4G24180.2 34.601 263 126 11 4 236 5 251 1.19e-41 144
Msa1398120 AT4G24180.1 35.827 254 118 10 12 236 19 256 2.52e-41 143
Msa1398120 AT5G02140.2 36.000 250 133 10 5 236 1 241 1.17e-40 140
Msa1398120 AT5G02140.1 36.000 250 133 10 5 236 1 241 1.33e-40 141
Msa1398120 AT4G24180.4 33.198 247 120 10 4 220 5 236 5.18e-36 130
Msa1398120 AT4G24180.3 34.454 238 112 9 12 220 19 241 7.80e-36 129
Msa1398120 AT5G40020.1 33.921 227 124 8 28 236 30 248 1.16e-34 124
Msa1398120 AT2G28790.1 31.373 255 145 8 4 235 1 248 5.80e-33 120
Msa1398120 AT1G70250.1 33.778 225 129 6 28 236 147 367 6.96e-33 126
Msa1398120 AT2G28790.2 31.373 255 145 8 4 235 26 273 8.80e-33 120
Msa1398120 AT4G36000.2 44.521 146 70 5 94 236 1 138 3.50e-32 117
Msa1398120 AT4G36000.1 44.521 146 70 5 94 236 1 138 3.50e-32 117
Msa1398120 AT4G18253.1 31.967 244 135 9 11 236 8 238 3.29e-29 110
Msa1398120 AT4G18250.1 34.545 220 123 7 30 236 61 272 3.50e-24 100
Msa1398120 AT5G24620.2 38.583 127 57 4 124 236 15 134 6.62e-18 81.3
Msa1398120 AT2G24810.1 25.926 243 121 8 1 235 1 192 2.67e-14 69.3

Find 63 sgRNAs with CRISPR-Local

Find 65 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTATTCTAAGTTCTTTA+AGG 0.109038 tig0022240:-100788 Msa1398120:CDS
GTGCTGGTTGCATCATCTTT+AGG 0.231896 tig0022240:+100739 None:intergenic
TGCTGGTTGCATCATCTTTA+GGG 0.281050 tig0022240:+100740 None:intergenic
GTACAAGTAACGCAAGAATC+TGG 0.345424 tig0022240:-101191 Msa1398120:CDS
AATTGTACTGCCGATATTAA+CGG 0.362766 tig0022240:-100946 Msa1398120:CDS
TCCTGCTTGTGCTGCAGCTA+TGG 0.386772 tig0022240:+101323 None:intergenic
AATTGCACTTTCGACAATTC+AGG 0.390196 tig0022240:-101159 Msa1398120:CDS
TGCTGCAGCTATGGATGTTA+TGG 0.396488 tig0022240:+101332 None:intergenic
CATCCACCTGGTACCTTAAG+TGG 0.408658 tig0022240:+100910 None:intergenic
AAGAACTTAGAATAAGTTGT+TGG 0.409578 tig0022240:+100793 None:intergenic
GCAAATTCCATGATTGTGTT+TGG 0.415246 tig0022240:+101072 None:intergenic
TTAGGGTAACTATAAGCATA+AGG 0.421618 tig0022240:+100757 None:intergenic
ACACTAGAGTGTCAAACAAT+AGG 0.437709 tig0022240:-101102 Msa1398120:CDS
TGAATTGTCGAAAGTGCAAT+TGG 0.451662 tig0022240:+101161 None:intergenic
TTGAGTTTCATGCCACCGCC+GGG 0.462414 tig0022240:+101249 None:intergenic
GCCACCGCCGGGGAAGGCTG+CGG 0.464024 tig0022240:+101260 None:intergenic
GTTGAGTTTCATGCCACCGC+CGG 0.464550 tig0022240:+101248 None:intergenic
GCCGCAGCCTTCCCCGGCGG+TGG 0.465884 tig0022240:-101261 Msa1398120:CDS
ACTTTCGACAATTCAGGTCT+CGG 0.467109 tig0022240:-101153 Msa1398120:CDS
ATTCTAAGTTCTTTAAGGAT+AGG 0.468720 tig0022240:-100783 Msa1398120:CDS
TTTCATGCCACCGCCGGGGA+AGG 0.472855 tig0022240:+101254 None:intergenic
AGGACACTCTCCGTTAATAT+CGG 0.474742 tig0022240:+100936 None:intergenic
ACAAATGCAACTACACCGTA+TGG 0.475606 tig0022240:-101284 Msa1398120:CDS
TCTTGCGTTACTTGTACCAT+TGG 0.482280 tig0022240:+101197 None:intergenic
TACAAGTAACGCAAGAATCT+GGG 0.482336 tig0022240:-101190 Msa1398120:CDS
AACTCAACACAGGTGAATCA+TGG 0.485867 tig0022240:-101233 Msa1398120:CDS
GGGGAAGGCTGCGGCCCATA+CGG 0.488521 tig0022240:+101269 None:intergenic
GCGAAACATCATAGAAATCA+AGG 0.493251 tig0022240:+101031 None:intergenic
TACACCACCAAACACAATCA+TGG 0.514809 tig0022240:-101079 Msa1398120:CDS
TATGATGTTTCGCTTGTACA+AGG 0.516071 tig0022240:-101021 Msa1398120:CDS
AACCAGCACATTCTCTTGTA+CGG 0.516261 tig0022240:-100725 Msa1398120:CDS
GTATGGGCCGCAGCCTTCCC+CGG 0.524947 tig0022240:-101267 Msa1398120:CDS
ACCACACGTGGCAGAGGCAT+TGG 0.525682 tig0022240:+100816 None:intergenic
GGTCTCGGAAAGTGTCAAAC+CGG 0.530011 tig0022240:-101138 Msa1398120:CDS
TAGTGTTCCGTTACAATCAC+CGG 0.530720 tig0022240:+101119 None:intergenic
AATATCGGCAGTACAATTAA+CGG 0.535596 tig0022240:+100951 None:intergenic
ACCAGCACATTCTCTTGTAC+GGG 0.539521 tig0022240:-100724 Msa1398120:CDS
AATTCCATGATTGTGTTTGG+TGG 0.543379 tig0022240:+101075 None:intergenic
TAGGGTAACTATAAGCATAA+GGG 0.543431 tig0022240:+100758 None:intergenic
AGAGTGTCCTACTCCACTTA+AGG 0.543641 tig0022240:-100923 Msa1398120:CDS
CTATGAGAAGGAAGATTGAG+AGG 0.547342 tig0022240:+101355 None:intergenic
TCCATAGCTGCAGCACAAGC+AGG 0.551144 tig0022240:-101324 Msa1398120:CDS
CCTACTCCACTTAAGGTACC+AGG 0.555994 tig0022240:-100916 Msa1398120:CDS
TGTTGGACCACACGTGGCAG+AGG 0.556682 tig0022240:+100810 None:intergenic
GTTGTATCAAACGTAGTACA+AGG 0.567408 tig0022240:+100880 None:intergenic
ACCAATGCCTCTGCCACGTG+TGG 0.578890 tig0022240:-100817 Msa1398120:CDS
CCTGGTACCTTAAGTGGAGT+AGG 0.586418 tig0022240:+100916 None:intergenic
AAACCGTCTTTAAATTCCTG+TGG 0.591625 tig0022240:-100976 Msa1398120:CDS
TCCCGTACAAGAGAATGTGC+TGG 0.600307 tig0022240:+100723 None:intergenic
CAAGGATTGTTACATCCACC+TGG 0.601793 tig0022240:+100898 None:intergenic
CAAATGCAACTACACCGTAT+GGG 0.615897 tig0022240:-101283 Msa1398120:CDS
TGTCAAACCGGTGATTGTAA+CGG 0.616265 tig0022240:-101126 Msa1398120:CDS
AGTACAATTAACGGTACCAC+AGG 0.617025 tig0022240:+100960 None:intergenic
GTACCACAGGAATTTAAAGA+CGG 0.626605 tig0022240:+100973 None:intergenic
TGGAACATGAACATAACCAA+TGG 0.633971 tig0022240:-101213 Msa1398120:CDS
TGGATGTTATGGCTATGAGA+AGG 0.634571 tig0022240:+101343 None:intergenic
AGCACATTCTCTTGTACGGG+AGG 0.640577 tig0022240:-100721 Msa1398120:CDS
ATAAGTTGTTGGACCACACG+TGG 0.652976 tig0022240:+100804 None:intergenic
ACAAGTAACGCAAGAATCTG+GGG 0.665144 tig0022240:-101189 Msa1398120:CDS
TGAGTTTCATGCCACCGCCG+GGG 0.679603 tig0022240:+101250 None:intergenic
TGGGCCGCAGCCTTCCCCGG+CGG 0.703292 tig0022240:-101264 Msa1398120:CDS
GGTGGCATGAAACTCAACAC+AGG 0.727771 tig0022240:-101243 Msa1398120:CDS
ACTCCACTTAAGGTACCAGG+TGG 0.750912 tig0022240:-100913 Msa1398120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTTATTCTAAGTTCTTTA+AGG - tig0022240:101280-101299 Msa1398120:CDS 20.0%
! AAGAACTTAGAATAAGTTGT+TGG + tig0022240:101278-101297 None:intergenic 25.0%
!! ATTCTAAGTTCTTTAAGGAT+AGG - tig0022240:101285-101304 Msa1398120:CDS 25.0%
!! AAAGACGGTTTTAACAGAAT+TGG + tig0022240:101083-101102 None:intergenic 30.0%
AATATCGGCAGTACAATTAA+CGG + tig0022240:101120-101139 None:intergenic 30.0%
AATTGTACTGCCGATATTAA+CGG - tig0022240:101122-101141 Msa1398120:CDS 30.0%
TAGGGTAACTATAAGCATAA+GGG + tig0022240:101313-101332 None:intergenic 30.0%
TTAGGGTAACTATAAGCATA+AGG + tig0022240:101314-101333 None:intergenic 30.0%
!! GAGGTTTGTTTTCATGATGA+TGG + tig0022240:100697-100716 None:intergenic 35.0%
TGGAACATGAACATAACCAA+TGG - tig0022240:100855-100874 Msa1398120:CDS 35.0%
TACAAGTAACGCAAGAATCT+GGG - tig0022240:100878-100897 Msa1398120:CDS 35.0%
! TGAATTGTCGAAAGTGCAAT+TGG + tig0022240:100910-100929 None:intergenic 35.0%
AATTGCACTTTCGACAATTC+AGG - tig0022240:100909-100928 Msa1398120:CDS 35.0%
! ACACTAGAGTGTCAAACAAT+AGG - tig0022240:100966-100985 Msa1398120:CDS 35.0%
AATTCCATGATTGTGTTTGG+TGG + tig0022240:100996-101015 None:intergenic 35.0%
GCAAATTCCATGATTGTGTT+TGG + tig0022240:100999-101018 None:intergenic 35.0%
GCGAAACATCATAGAAATCA+AGG + tig0022240:101040-101059 None:intergenic 35.0%
TATGATGTTTCGCTTGTACA+AGG - tig0022240:101047-101066 Msa1398120:CDS 35.0%
AAACCGTCTTTAAATTCCTG+TGG - tig0022240:101092-101111 Msa1398120:CDS 35.0%
GTACCACAGGAATTTAAAGA+CGG + tig0022240:101098-101117 None:intergenic 35.0%
GTTGTATCAAACGTAGTACA+AGG + tig0022240:101191-101210 None:intergenic 35.0%
CTATGAGAAGGAAGATTGAG+AGG + tig0022240:100716-100735 None:intergenic 40.0%
TGGATGTTATGGCTATGAGA+AGG + tig0022240:100728-100747 None:intergenic 40.0%
ACAAATGCAACTACACCGTA+TGG - tig0022240:100784-100803 Msa1398120:CDS 40.0%
CAAATGCAACTACACCGTAT+GGG - tig0022240:100785-100804 Msa1398120:CDS 40.0%
AACTCAACACAGGTGAATCA+TGG - tig0022240:100835-100854 Msa1398120:CDS 40.0%
TCTTGCGTTACTTGTACCAT+TGG + tig0022240:100874-100893 None:intergenic 40.0%
GTACAAGTAACGCAAGAATC+TGG - tig0022240:100877-100896 Msa1398120:CDS 40.0%
ACAAGTAACGCAAGAATCTG+GGG - tig0022240:100879-100898 Msa1398120:CDS 40.0%
ACTTTCGACAATTCAGGTCT+CGG - tig0022240:100915-100934 Msa1398120:CDS 40.0%
TGTCAAACCGGTGATTGTAA+CGG - tig0022240:100942-100961 Msa1398120:CDS 40.0%
TAGTGTTCCGTTACAATCAC+CGG + tig0022240:100952-100971 None:intergenic 40.0%
TACACCACCAAACACAATCA+TGG - tig0022240:100989-101008 Msa1398120:CDS 40.0%
AGTACAATTAACGGTACCAC+AGG + tig0022240:101111-101130 None:intergenic 40.0%
AGGACACTCTCCGTTAATAT+CGG + tig0022240:101135-101154 None:intergenic 40.0%
! TGCTGGTTGCATCATCTTTA+GGG + tig0022240:101331-101350 None:intergenic 40.0%
AACCAGCACATTCTCTTGTA+CGG - tig0022240:101343-101362 Msa1398120:CDS 40.0%
TGCTGCAGCTATGGATGTTA+TGG + tig0022240:100739-100758 None:intergenic 45.0%
! AGAGTGTCCTACTCCACTTA+AGG - tig0022240:101145-101164 Msa1398120:CDS 45.0%
CAAGGATTGTTACATCCACC+TGG + tig0022240:101173-101192 None:intergenic 45.0%
ATAAGTTGTTGGACCACACG+TGG + tig0022240:101267-101286 None:intergenic 45.0%
!! GTGCTGGTTGCATCATCTTT+AGG + tig0022240:101332-101351 None:intergenic 45.0%
ACCAGCACATTCTCTTGTAC+GGG - tig0022240:101344-101363 Msa1398120:CDS 45.0%
GGTGGCATGAAACTCAACAC+AGG - tig0022240:100825-100844 Msa1398120:CDS 50.0%
!! GGTCTCGGAAAGTGTCAAAC+CGG - tig0022240:100930-100949 Msa1398120:CDS 50.0%
CCTGGTACCTTAAGTGGAGT+AGG + tig0022240:101155-101174 None:intergenic 50.0%
! CCTACTCCACTTAAGGTACC+AGG - tig0022240:101152-101171 Msa1398120:CDS 50.0%
! ACTCCACTTAAGGTACCAGG+TGG - tig0022240:101155-101174 Msa1398120:CDS 50.0%
CATCCACCTGGTACCTTAAG+TGG + tig0022240:101161-101180 None:intergenic 50.0%
TCCCGTACAAGAGAATGTGC+TGG + tig0022240:101348-101367 None:intergenic 50.0%
AGCACATTCTCTTGTACGGG+AGG - tig0022240:101347-101366 Msa1398120:CDS 50.0%
TCCATAGCTGCAGCACAAGC+AGG - tig0022240:100744-100763 Msa1398120:CDS 55.0%
TCCTGCTTGTGCTGCAGCTA+TGG + tig0022240:100748-100767 None:intergenic 55.0%
TTGAGTTTCATGCCACCGCC+GGG + tig0022240:100822-100841 None:intergenic 55.0%
GTTGAGTTTCATGCCACCGC+CGG + tig0022240:100823-100842 None:intergenic 55.0%
TGAGTTTCATGCCACCGCCG+GGG + tig0022240:100821-100840 None:intergenic 60.0%
ACCAATGCCTCTGCCACGTG+TGG - tig0022240:101251-101270 Msa1398120:CDS 60.0%
! ACCACACGTGGCAGAGGCAT+TGG + tig0022240:101255-101274 None:intergenic 60.0%
TGTTGGACCACACGTGGCAG+AGG + tig0022240:101261-101280 None:intergenic 60.0%
TTTCATGCCACCGCCGGGGA+AGG + tig0022240:100817-100836 None:intergenic 65.0%
GGGGAAGGCTGCGGCCCATA+CGG + tig0022240:100802-100821 None:intergenic 70.0%
GTATGGGCCGCAGCCTTCCC+CGG - tig0022240:100801-100820 Msa1398120:CDS 70.0%
! TGGGCCGCAGCCTTCCCCGG+CGG - tig0022240:100804-100823 Msa1398120:CDS 80.0%
! GCCACCGCCGGGGAAGGCTG+CGG + tig0022240:100811-100830 None:intergenic 80.0%
! GCCGCAGCCTTCCCCGGCGG+TGG - tig0022240:100807-100826 Msa1398120:CDS 85.0%
Chromosome Type Strat End Strand Name
tig0022240 gene 100690 101400 100690 ID=Msa1398120;Name=Msa1398120
tig0022240 mRNA 100690 101400 100690 ID=Msa1398120-mRNA-1;Parent=Msa1398120;Name=Msa1398120-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|-1|0|1|-1|1|1|0|236
tig0022240 exon 100690 101400 100690 ID=Msa1398120-mRNA-1:exon:16440;Parent=Msa1398120-mRNA-1
tig0022240 CDS 100690 101400 100690 ID=Msa1398120-mRNA-1:cds;Parent=Msa1398120-mRNA-1
Gene Sequence

>Msa1398120

ATGGCCATCATCATGAAAACAAACCTCTCAATCTTCCTTCTCATAGCCATAACATCCATAGCTGCAGCACAAGCAGGAAGATTCAATATCACAAACAAATGCAACTACACCGTATGGGCCGCAGCCTTCCCCGGCGGTGGCATGAAACTCAACACAGGTGAATCATGGAACATGAACATAACCAATGGTACAAGTAACGCAAGAATCTGGGGTCGAACCAATTGCACTTTCGACAATTCAGGTCTCGGAAAGTGTCAAACCGGTGATTGTAACGGAACACTAGAGTGTCAAACAATAGGTACACCACCAAACACAATCATGGAATTTGCTTTGAACATGTACAACGACCTTGATTTCTATGATGTTTCGCTTGTACAAGGTTTCAATATTCCAATTCTGTTAAAACCGTCTTTAAATTCCTGTGGTACCGTTAATTGTACTGCCGATATTAACGGAGAGTGTCCTACTCCACTTAAGGTACCAGGTGGATGTAACAATCCTTGTACTACGTTTGATACAACTGAATATTGTTGCAACTCTGATTCTGCTAGATCTGCAGCTACCAATGCCTCTGCCACGTGTGGTCCAACAACTTATTCTAAGTTCTTTAAGGATAGGTGCCCTTATGCTTATAGTTACCCTAAAGATGATGCAACCAGCACATTCTCTTGTACGGGAGGAACAACTTATGATGTTGTCTTTTGTCCTTAA

Protein sequence

>Msa1398120

MAIIMKTNLSIFLLIAITSIAAAQAGRFNITNKCNYTVWAAAFPGGGMKLNTGESWNMNITNGTSNARIWGRTNCTFDNSGLGKCQTGDCNGTLECQTIGTPPNTIMEFALNMYNDLDFYDVSLVQGFNIPILLKPSLNSCGTVNCTADINGECPTPLKVPGGCNNPCTTFDTTEYCCNSDSARSAATNASATCGPTTYSKFFKDRCPYAYSYPKDDATSTFSCTGGTTYDVVFCP*