AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0193950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0193950 MtrunA17_Chr2g0284321 95.045 222 3 2 1 220 1 216 8.00e-155 427
Msa0193950 MtrunA17_Chr8g0379461 53.769 199 63 7 11 197 46 227 5.20e-62 193
Msa0193950 MtrunA17_Chr2g0319961 51.980 202 80 6 7 194 47 245 1.49e-59 187
Msa0193950 MtrunA17_Chr7g0248691 60.440 91 30 1 9 99 134 218 2.55e-33 122
Msa0193950 MtrunA17_Chr8g0348311 50.000 126 49 3 4 121 129 248 9.38e-33 120
Msa0193950 MtrunA17_Chr2g0293481 50.769 130 48 3 11 124 239 368 1.39e-32 122
Msa0193950 MtrunA17_Chr7g0270051 52.252 111 48 3 9 116 24 132 6.04e-32 117
Msa0193950 MtrunA17_Chr8g0387501 76.562 64 15 0 36 99 130 193 1.59e-31 116
Msa0193950 MtrunA17_Chr5g0401821 54.945 91 40 1 4 94 169 258 1.33e-28 108
Msa0193950 MtrunA17_Chr1g0147881 54.762 84 37 1 11 94 239 321 9.87e-28 107
Msa0193950 MtrunA17_Chr4g0053281 55.172 87 37 2 9 94 240 325 2.06e-27 106
Msa0193950 MtrunA17_Chr1g0202461 72.308 65 18 0 35 99 261 325 2.14e-27 107
Msa0193950 MtrunA17_Chr4g0071521 56.471 85 36 1 9 93 220 303 2.98e-27 105
Msa0193950 MtrunA17_Chr1g0184691 55.294 85 37 1 12 96 271 354 2.98e-26 103
Msa0193950 MtrunA17_Chr7g0228941 64.407 59 21 0 34 92 51 109 4.67e-25 95.1
Msa0193950 MtrunA17_Chr3g0139021 51.163 86 41 1 11 96 291 375 4.67e-24 98.6
Msa0193950 MtrunA17_Chr2g0289181 59.677 62 25 0 34 95 13 74 3.83e-22 90.5
Msa0193950 MtrunA17_Chr3g0099641 58.065 62 26 0 35 96 251 312 2.65e-19 85.5
Msa0193950 MtrunA17_Chr7g0218081 42.017 119 50 4 11 116 375 487 6.52e-19 84.7
Msa0193950 MtrunA17_Chr7g0218081 43.182 88 47 3 31 118 224 308 1.45e-14 72.0
Msa0193950 MtrunA17_Chr7g0270831 56.452 62 27 0 35 96 216 277 7.42e-19 84.3
Msa0193950 MtrunA17_Chr4g0051881 56.667 60 25 1 36 95 179 237 8.47e-19 83.2
Msa0193950 MtrunA17_Chr5g0443131 55.000 60 26 1 36 95 158 216 1.10e-18 82.8
Msa0193950 MtrunA17_Chr2g0288871 56.452 62 27 0 35 96 305 366 1.16e-18 84.0
Msa0193950 MtrunA17_Chr2g0302391 55.738 61 27 0 36 96 212 272 1.40e-18 83.6
Msa0193950 MtrunA17_Chr3g0079691 39.474 114 64 4 32 142 277 388 1.62e-18 83.6
Msa0193950 MtrunA17_Chr3g0079691 41.053 95 46 3 36 121 496 589 1.06e-14 72.4
Msa0193950 MtrunA17_Chr7g0263531 53.846 78 30 3 36 113 362 433 4.45e-18 82.0
Msa0193950 MtrunA17_Chr7g0263531 49.206 63 30 2 33 95 187 247 2.20e-14 71.2
Msa0193950 MtrunA17_Chr2g0322391 54.839 62 28 0 35 96 349 410 5.87e-18 82.0
Msa0193950 MtrunA17_Chr5g0418191 47.500 80 40 2 36 114 321 399 8.05e-18 81.3
Msa0193950 MtrunA17_Chr5g0418191 32.520 123 80 3 33 155 149 268 2.07e-15 74.3
Msa0193950 MtrunA17_Chr5g0418781 54.688 64 27 2 36 98 125 187 8.27e-18 79.7
Msa0193950 MtrunA17_Chr4g0042831 47.561 82 40 2 36 115 279 359 8.41e-18 80.9
Msa0193950 MtrunA17_Chr4g0042831 35.246 122 68 3 7 126 125 237 1.06e-12 66.2
Msa0193950 MtrunA17_Chr4g0075201 51.613 62 30 0 35 96 267 328 6.91e-17 78.6
Msa0193950 MtrunA17_Chr4g0060271 52.459 61 29 0 35 95 255 315 7.08e-17 79.0
Msa0193950 MtrunA17_Chr4g0025051 52.459 61 29 0 35 95 335 395 7.77e-17 78.6
Msa0193950 MtrunA17_Chr4g0025061 50.000 64 32 0 32 95 357 420 9.95e-17 78.2
Msa0193950 MtrunA17_Chr5g0445311 50.794 63 30 1 36 98 365 426 1.22e-16 78.2
Msa0193950 MtrunA17_Chr5g0445311 32.168 143 94 3 36 178 201 340 1.18e-14 72.4
Msa0193950 MtrunA17_Chr1g0194481 48.333 60 30 1 36 95 159 217 1.99e-16 76.6
Msa0193950 MtrunA17_Chr3g0101131 50.000 64 31 1 36 99 416 478 2.21e-16 77.4
Msa0193950 MtrunA17_Chr4g0051181 52.459 61 29 0 35 95 243 303 3.23e-16 76.6
Msa0193950 MtrunA17_Chr1g0150281 49.123 57 29 0 36 92 141 197 3.33e-16 75.5
Msa0193950 MtrunA17_Chr5g0432161 52.381 63 29 1 36 98 422 483 6.42e-16 75.9
Msa0193950 MtrunA17_Chr5g0432161 48.333 60 29 2 36 95 245 302 1.73e-11 63.2
Msa0193950 MtrunA17_Chr3g0106491 43.158 95 51 2 14 106 342 435 6.49e-16 75.9
Msa0193950 MtrunA17_Chr3g0106491 40.909 110 59 5 36 143 199 304 2.96e-13 68.2
Msa0193950 MtrunA17_Chr7g0270191 51.667 60 28 1 36 95 146 204 8.81e-16 74.3
Msa0193950 MtrunA17_Chr7g0249301 55.000 60 25 2 36 95 63 120 9.74e-16 75.1
Msa0193950 MtrunA17_Chr7g0249301 50.794 63 30 1 36 98 293 354 7.93e-15 72.4
Msa0193950 MtrunA17_Chr7g0238921 40.000 105 56 3 36 134 125 228 1.36e-15 74.3
Msa0193950 MtrunA17_Chr4g0068541 48.333 60 30 1 36 95 209 267 1.43e-15 74.7
Msa0193950 MtrunA17_Chr7g0216891 53.448 58 27 0 35 92 219 276 1.50e-15 75.1
Msa0193950 MtrunA17_Chr1g0150271 46.667 60 32 0 36 95 102 161 2.71e-15 72.4
Msa0193950 MtrunA17_Chr3g0136961 43.056 72 41 0 36 107 139 210 2.88e-15 73.2
Msa0193950 MtrunA17_Chr7g0249311 48.052 77 34 2 36 112 393 463 3.67e-15 73.9
Msa0193950 MtrunA17_Chr7g0249311 48.611 72 34 3 24 95 169 237 9.64e-15 72.8
Msa0193950 MtrunA17_Chr6g0485431 51.613 62 28 2 35 95 154 214 3.86e-15 73.2
Msa0193950 MtrunA17_Chr4g0001361 42.857 70 40 0 27 96 154 223 4.81e-15 72.8
Msa0193950 MtrunA17_Chr7g0275531 46.479 71 32 2 36 100 119 189 1.63e-14 71.2
Msa0193950 MtrunA17_Chr4g0074001 47.619 63 32 1 36 98 360 421 3.08e-14 70.9
Msa0193950 MtrunA17_Chr2g0294231 46.667 60 31 1 36 95 204 262 3.36e-14 70.5
Msa0193950 MtrunA17_Chr2g0333851 45.000 60 33 0 36 95 170 229 4.05e-14 70.1
Msa0193950 MtrunA17_Chr8g0347251 30.827 133 83 3 9 134 110 240 4.97e-14 70.1
Msa0193950 MtrunA17_Chr3g0126391 50.000 60 28 1 33 90 131 190 5.52e-14 69.7
Msa0193950 MtrunA17_Chr3g0129321 48.333 60 30 1 36 95 119 177 6.40e-14 67.8
Msa0193950 MtrunA17_Chr8g0387981 31.724 145 86 4 9 146 106 244 8.69e-14 69.3
Msa0193950 MtrunA17_Chr4g0004911 49.206 63 31 1 36 98 337 398 1.01e-13 69.3
Msa0193950 MtrunA17_Chr5g0447701 50.000 60 29 1 36 95 253 311 1.09e-13 69.3
Msa0193950 MtrunA17_Chr5g0447701 48.333 60 29 2 36 95 93 150 5.55e-11 61.2
Msa0193950 MtrunA17_Chr1g0189391 55.932 59 24 2 36 93 98 155 1.22e-13 68.9
Msa0193950 MtrunA17_Chr1g0188941 38.298 94 48 2 4 97 29 112 1.29e-13 65.1
Msa0193950 MtrunA17_Chr1g0150801 49.123 57 28 1 36 92 103 158 2.52e-13 65.5
Msa0193950 MtrunA17_Chr7g0243891 47.619 63 32 1 36 98 375 436 4.08e-13 67.8
Msa0193950 MtrunA17_Chr7g0243891 45.588 68 33 3 36 103 217 280 6.11e-12 64.3
Msa0193950 MtrunA17_Chr4g0024391 45.312 64 35 0 32 95 226 289 6.09e-13 67.0
Msa0193950 MtrunA17_Chr5g0428351 34.127 126 72 4 36 152 184 307 6.91e-13 66.6
Msa0193950 MtrunA17_Chr8g0383351 46.552 58 30 1 36 93 161 217 1.20e-12 65.1
Msa0193950 MtrunA17_Chr3g0129361 46.552 58 30 1 36 93 145 201 1.57e-12 64.3
Msa0193950 MtrunA17_Chr8g0335811 48.276 58 29 1 36 93 155 211 1.88e-12 64.3
Msa0193950 MtrunA17_Chr8g0383251 45.000 60 32 1 36 95 109 167 2.13e-12 63.5
Msa0193950 MtrunA17_Chr7g0224801 44.068 59 32 1 36 94 94 151 5.27e-12 62.0
Msa0193950 MtrunA17_Chr7g0248721 47.368 57 28 2 36 92 142 196 3.03e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0193950 AT1G29280.1 48.214 224 94 7 4 208 38 258 1.97e-57 182
Msa0193950 AT3G58710.2 45.714 210 89 6 11 197 41 248 7.69e-49 161
Msa0193950 AT3G58710.1 45.455 209 89 6 12 197 43 249 2.88e-48 159
Msa0193950 AT2G34830.2 36.709 237 101 5 6 203 185 411 2.09e-33 124
Msa0193950 AT2G34830.1 36.709 237 101 5 6 203 176 402 2.66e-33 124
Msa0193950 AT4G01250.1 44.000 150 69 3 7 155 105 240 3.96e-32 118
Msa0193950 AT1G30650.1 61.290 93 32 1 11 99 189 281 3.45e-31 118
Msa0193950 AT5G52830.1 49.153 118 50 3 9 125 144 252 6.45e-30 114
Msa0193950 AT4G23550.1 48.837 129 55 4 16 143 126 244 6.75e-30 113
Msa0193950 AT2G23320.1 53.488 86 39 1 9 94 215 299 4.79e-29 110
Msa0193950 AT4G24240.1 56.977 86 36 1 9 94 256 340 8.55e-28 108
Msa0193950 AT5G45050.2 55.914 93 36 1 7 99 1129 1216 1.19e-26 107
Msa0193950 AT2G30590.1 54.762 84 37 1 9 92 288 370 1.19e-26 105
Msa0193950 AT5G45050.1 55.914 93 36 1 7 99 1157 1244 1.36e-26 107
Msa0193950 AT5G45050.4 55.914 93 36 1 7 99 1018 1105 1.54e-26 107
Msa0193950 AT4G31550.2 54.878 82 36 1 11 92 222 302 2.60e-26 103
Msa0193950 AT4G31550.1 54.321 81 36 1 12 92 224 303 1.13e-25 102
Msa0193950 AT3G04670.1 51.648 91 43 1 3 93 231 320 2.52e-25 101
Msa0193950 AT2G24570.1 54.321 81 36 1 12 92 221 300 4.31e-25 100
Msa0193950 AT5G28650.1 50.549 91 44 1 3 93 231 320 6.65e-25 100
Msa0193950 AT5G46350.1 51.220 82 39 1 36 117 184 264 1.83e-21 90.9
Msa0193950 AT2G04880.1 44.828 87 45 2 36 120 308 393 1.74e-19 86.7
Msa0193950 AT2G04880.2 44.828 87 45 2 36 120 284 369 1.80e-19 86.7
Msa0193950 AT4G04450.2 56.452 62 27 0 35 96 198 259 5.41e-19 85.1
Msa0193950 AT4G18170.1 56.667 60 25 1 36 95 173 231 5.91e-19 84.0
Msa0193950 AT4G04450.1 56.452 62 27 0 35 96 292 353 7.64e-19 84.7
Msa0193950 AT1G62300.1 54.839 62 28 0 35 96 312 373 1.30e-18 84.3
Msa0193950 AT4G22070.4 54.839 62 28 0 35 96 297 358 2.07e-18 83.6
Msa0193950 AT4G22070.3 54.839 62 28 0 35 96 297 358 2.07e-18 83.6
Msa0193950 AT4G22070.2 54.839 62 28 0 35 96 297 358 2.07e-18 83.6
Msa0193950 AT4G22070.1 54.839 62 28 0 35 96 297 358 2.07e-18 83.6
Msa0193950 AT1G29860.1 53.333 60 27 1 36 95 137 195 2.62e-18 81.6
Msa0193950 AT5G45260.1 45.455 99 43 4 17 113 1197 1286 2.63e-18 83.6
Msa0193950 AT4G01720.1 53.846 65 30 0 32 96 236 300 1.79e-17 80.9
Msa0193950 AT2G40740.1 42.857 98 48 2 1 90 133 230 2.27e-17 79.3
Msa0193950 AT2G40740.3 42.857 98 48 2 1 90 142 239 2.59e-17 79.3
Msa0193950 AT2G03340.1 42.574 101 43 3 11 98 379 477 6.50e-17 79.3
Msa0193950 AT2G03340.1 41.379 87 44 3 28 114 243 322 3.90e-14 71.2
Msa0193950 AT1G68150.1 53.333 60 28 0 36 95 236 295 1.55e-16 77.8
Msa0193950 AT4G31800.2 41.250 80 46 1 16 95 93 171 3.18e-16 75.5
Msa0193950 AT1G18860.1 52.459 61 29 0 35 95 239 299 3.70e-16 77.0
Msa0193950 AT4G31800.1 45.455 66 36 0 30 95 171 236 5.03e-16 75.9
Msa0193950 AT5G15130.1 50.820 61 30 0 35 95 227 287 5.14e-16 76.6
Msa0193950 AT5G15130.2 50.820 61 30 0 35 95 185 245 5.51e-16 76.6
Msa0193950 AT5G07100.2 49.206 63 31 1 36 98 142 203 8.62e-16 73.6
Msa0193950 AT5G07100.2 30.252 119 74 3 27 139 16 131 4.51e-11 60.8
Msa0193950 AT5G07100.4 49.206 63 31 1 36 98 142 203 8.62e-16 73.6
Msa0193950 AT5G07100.4 30.252 119 74 3 27 139 16 131 4.51e-11 60.8
Msa0193950 AT5G07100.5 49.206 63 31 1 36 98 142 203 8.62e-16 73.6
Msa0193950 AT5G07100.5 30.252 119 74 3 27 139 16 131 4.51e-11 60.8
Msa0193950 AT5G07100.3 49.206 63 31 1 36 98 142 203 8.62e-16 73.6
Msa0193950 AT5G07100.3 30.252 119 74 3 27 139 16 131 4.51e-11 60.8
Msa0193950 AT4G26440.1 43.902 82 43 3 33 114 176 254 9.48e-16 75.9
Msa0193950 AT4G26440.1 48.438 64 32 1 36 99 373 435 4.89e-14 70.9
Msa0193950 AT5G26170.1 50.000 58 28 1 36 93 114 170 9.59e-16 72.4
Msa0193950 AT1G13960.1 51.667 60 28 1 36 95 410 468 1.00e-15 75.9
Msa0193950 AT1G13960.1 38.384 99 58 3 10 108 204 299 1.54e-14 72.4
Msa0193950 AT1G13960.2 51.667 60 28 1 36 95 257 315 1.11e-15 75.1
Msa0193950 AT1G13960.2 44.872 78 40 3 31 108 72 146 1.93e-14 71.6
Msa0193950 AT2G25000.2 45.455 66 36 0 30 95 98 163 1.59e-15 73.2
Msa0193950 AT2G25000.4 45.455 66 36 0 30 95 98 163 1.59e-15 73.2
Msa0193950 AT4G30935.1 47.619 63 32 1 36 98 332 393 1.71e-15 75.1
Msa0193950 AT2G37260.3 43.678 87 48 1 8 94 242 327 2.06e-15 74.3
Msa0193950 AT2G37260.3 48.333 60 29 2 36 95 86 143 1.46e-11 63.2
Msa0193950 AT2G37260.2 43.678 87 48 1 8 94 240 325 2.18e-15 74.3
Msa0193950 AT2G37260.2 48.333 60 29 2 36 95 84 141 1.48e-11 63.2
Msa0193950 AT4G23810.1 32.847 137 86 2 6 140 129 261 2.49e-15 73.9
Msa0193950 AT2G47260.1 48.333 60 30 1 36 95 175 233 2.49e-15 73.9
Msa0193950 AT2G37260.1 43.678 87 48 1 8 94 322 407 2.64e-15 74.3
Msa0193950 AT2G37260.1 48.333 60 29 2 36 95 166 223 1.33e-11 63.5
Msa0193950 AT5G49520.1 50.000 60 29 1 36 95 222 280 2.79e-15 74.3
Msa0193950 AT5G07100.1 49.206 63 31 1 36 98 235 296 3.06e-15 73.6
Msa0193950 AT2G38470.1 50.794 63 30 1 36 98 363 424 3.08e-15 74.3
Msa0193950 AT2G38470.1 46.667 60 30 2 36 95 185 242 2.10e-11 63.2
Msa0193950 AT3G01080.2 51.667 60 28 1 36 95 345 403 3.21e-15 74.3
Msa0193950 AT3G01080.2 47.059 68 34 2 31 98 201 266 1.42e-13 69.3
Msa0193950 AT4G11070.2 40.426 94 52 2 8 97 82 175 3.39e-15 73.2
Msa0193950 AT2G25000.3 45.455 66 36 0 30 95 120 185 3.73e-15 72.4
Msa0193950 AT4G11070.1 40.426 94 52 2 8 97 114 207 3.97e-15 73.2
Msa0193950 AT3G01080.1 51.667 60 28 1 36 95 307 365 4.01e-15 73.9
Msa0193950 AT3G01080.1 47.059 68 34 2 31 98 163 228 1.49e-13 69.3
Msa0193950 AT4G26640.2 50.000 60 29 1 36 95 382 440 4.34e-15 73.9
Msa0193950 AT4G26640.2 45.161 62 32 2 36 97 212 271 6.01e-11 61.6
Msa0193950 AT4G26640.5 50.000 60 29 1 36 95 206 264 4.35e-15 73.6
Msa0193950 AT4G26640.5 45.161 62 32 2 36 97 36 95 5.66e-11 61.6
Msa0193950 AT4G26640.6 50.000 60 29 1 36 95 206 264 4.35e-15 73.6
Msa0193950 AT4G26640.6 45.161 62 32 2 36 97 36 95 5.66e-11 61.6
Msa0193950 AT4G26640.4 50.000 60 29 1 36 95 206 264 4.35e-15 73.6
Msa0193950 AT4G26640.4 45.161 62 32 2 36 97 36 95 5.66e-11 61.6
Msa0193950 AT4G26640.3 50.000 60 29 1 36 95 206 264 4.35e-15 73.6
Msa0193950 AT4G26640.3 45.161 62 32 2 36 97 36 95 5.66e-11 61.6
Msa0193950 AT2G25000.1 45.455 66 36 0 30 95 141 206 4.40e-15 72.4
Msa0193950 AT4G26640.1 50.000 60 29 1 36 95 310 368 4.66e-15 73.9
Msa0193950 AT4G26640.1 45.161 62 32 2 36 97 140 199 6.16e-11 61.6
Msa0193950 AT4G26640.7 50.000 60 29 1 36 95 342 400 4.76e-15 73.9
Msa0193950 AT4G26640.7 45.161 62 32 2 36 97 172 231 7.13e-11 61.6
Msa0193950 AT2G21900.1 41.860 86 43 2 16 95 84 168 5.17e-15 71.2
Msa0193950 AT3G62340.1 45.455 77 38 2 36 109 119 194 5.57e-15 72.4
Msa0193950 AT1G69810.1 50.000 62 30 1 35 95 203 264 6.74e-15 73.2
Msa0193950 AT1G80840.1 34.615 104 67 1 15 117 125 228 6.88e-15 72.4
Msa0193950 AT1G69310.4 49.153 59 29 1 36 94 148 205 7.38e-15 72.0
Msa0193950 AT1G69310.2 49.153 59 29 1 36 94 148 205 7.38e-15 72.0
Msa0193950 AT1G69310.1 49.153 59 29 1 36 94 148 205 7.38e-15 72.0
Msa0193950 AT1G69810.2 50.000 62 30 1 35 95 145 206 9.69e-15 72.4
Msa0193950 AT5G56270.1 49.206 63 31 1 36 98 488 549 4.67e-14 70.9
Msa0193950 AT5G56270.1 47.692 65 32 2 33 97 271 333 1.86e-13 69.3
Msa0193950 AT3G01970.1 46.774 62 32 1 36 97 66 126 1.33e-13 66.2
Msa0193950 AT3G01080.3 47.692 65 32 2 31 95 201 263 1.36e-13 68.9
Msa0193950 AT1G64000.1 49.123 57 28 1 36 92 115 170 2.70e-13 66.2
Msa0193950 AT1G55600.1 36.782 87 50 2 10 96 286 367 6.08e-13 67.8
Msa0193950 AT2G30250.1 48.333 60 30 1 36 95 329 387 6.36e-13 67.4
Msa0193950 AT5G41570.1 49.123 57 28 1 36 92 99 154 9.77e-13 64.7
Msa0193950 AT1G66560.1 52.542 59 26 1 34 90 102 160 1.02e-12 65.9
Msa0193950 AT2G46130.1 47.368 57 29 1 36 92 31 86 1.72e-12 62.4
Msa0193950 AT2G46400.1 40.000 80 45 2 28 104 97 176 1.78e-12 65.5
Msa0193950 AT2G44745.1 49.123 57 28 1 36 92 146 201 2.34e-12 64.3
Msa0193950 AT5G13080.1 44.068 59 32 1 36 94 68 125 2.62e-12 62.8
Msa0193950 AT1G80590.1 38.144 97 54 2 5 95 51 147 2.70e-12 64.3
Msa0193950 AT3G56400.1 35.802 81 48 2 12 90 99 177 5.96e-12 63.9
Msa0193950 AT5G43290.1 38.542 96 48 2 1 96 90 174 6.02e-12 63.9
Msa0193950 AT5G01900.1 40.244 82 46 2 12 90 86 167 1.17e-11 62.8
Msa0193950 AT5G24110.1 43.750 64 34 1 29 90 107 170 1.46e-11 63.2
Msa0193950 AT4G39410.1 46.552 58 30 1 36 93 224 280 2.41e-11 62.4
Msa0193950 AT1G66550.2 32.374 139 84 5 5 136 70 205 2.58e-11 61.6
Msa0193950 AT1G66550.1 37.383 107 60 4 34 136 107 210 9.21e-11 60.5

Find 98 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATTATCATTTGTTTATT+AGG 0.129965 2_1:-9794104 None:intergenic
TCATTATCATTTGTTTATTA+GGG 0.180992 2_1:-9794103 None:intergenic
GACCCTTAATCACTCTTAAA+AGG 0.221949 2_1:-9794290 None:intergenic
GGAGCTTTGTGGAGACTTAT+TGG 0.236522 2_1:-9794145 None:intergenic
CACTCTCTTCTTCTGCTAAA+AGG 0.248402 2_1:+9794418 Msa0193950:CDS
CATGAAATTAAGAACTTAAT+AGG 0.259309 2_1:-9795797 None:intergenic
ACCTCTTTCTATGCTTAATT+AGG 0.267112 2_1:+9794236 Msa0193950:five_prime_UTR
TCGGGTTCTTGTTCTTGTTC+TGG 0.268469 2_1:-9795293 None:intergenic
TCTTGTTCTTGTTCTGGTTC+AGG 0.273307 2_1:-9795287 None:intergenic
CTGGTGTTGCGGTAGTTTCT+TGG 0.299051 2_1:-9795227 None:intergenic
CGGAGTGTTCGACGGTGTTT+TGG 0.329073 2_1:+9795501 Msa0193950:CDS
CGGGTTTGTTGGGTTTAGTT+TGG 0.344993 2_1:+9795631 Msa0193950:three_prime_UTR
TGGATAAGGGGAACCTTTGA+TGG 0.364500 2_1:-9794771 None:intergenic
GTTTGATGCGGTGTTGTTGC+TGG 0.368100 2_1:-9795246 None:intergenic
TTGAAGAAGATTATAAAGAT+TGG 0.368130 2_1:-9794187 None:intergenic
GTCCCTTCCACATTCTTCAT+TGG 0.371466 2_1:-9794698 None:intergenic
TGCCGATCTCGGAGAGTTGC+CGG 0.372131 2_1:+9795481 Msa0193950:CDS
TGATGATCTTTCCATGTTAG+AGG 0.376413 2_1:-9794397 None:intergenic
TCATGGGCTTGGAGAAAGTA+TGG 0.382534 2_1:+9794740 Msa0193950:CDS
GAGAATGAATACCTTGGATA+AGG 0.400647 2_1:-9794785 None:intergenic
CACCGTCTGATTCATGGGCT+TGG 0.402885 2_1:+9794729 Msa0193950:CDS
CACTCCACCGTCTGATTCAT+GGG 0.406966 2_1:+9794724 Msa0193950:CDS
ACACTCCACCGTCTGATTCA+TGG 0.409389 2_1:+9794723 Msa0193950:CDS
AGAATGAATACCTTGGATAA+GGG 0.413010 2_1:-9794784 None:intergenic
TAGGCGAGGTATAAAGAAAA+GGG 0.417404 2_1:+9794664 Msa0193950:intron
CATAAGATGCGGTACTCAAC+CGG 0.417532 2_1:+9794074 None:intergenic
ATGTCGTTGTTTGCCGATCT+CGG 0.427384 2_1:+9795470 Msa0193950:CDS
AGGAGGATGGTTTGGAGATG+TGG 0.430346 2_1:+9795370 Msa0193950:CDS
ATTGCCACCGGTGATGAGTT+AGG 0.436783 2_1:+9795350 Msa0193950:CDS
CTCTAAAACTAGGAGCTTTG+TGG 0.442692 2_1:-9794156 None:intergenic
AGTGTCGATGTTGGGAGAAG+AGG 0.448754 2_1:+9795445 Msa0193950:CDS
ATAGGCGAGGTATAAAGAAA+AGG 0.449369 2_1:+9794663 Msa0193950:intron
AGGAGGAGTGGTGCCGGCGC+CGG 0.456828 2_1:+9795530 Msa0193950:CDS
GATGAGTTAGGAGGATGGTT+TGG 0.461275 2_1:+9795362 Msa0193950:CDS
GAGAAGGAAGTGTCGATGTT+GGG 0.468641 2_1:+9795437 Msa0193950:CDS
CAAGTGGATATATGCGCAGT+TGG 0.477016 2_1:+9795677 Msa0193950:three_prime_UTR
TTTCATGCTTGATTCATAGC+TGG 0.481465 2_1:+9795813 Msa0193950:three_prime_UTR
GTTGGAGTGTCCGATGTTCT+CGG 0.483924 2_1:+9795415 Msa0193950:CDS
TTGCGGTAGTTTCTTGGTGG+TGG 0.484307 2_1:-9795221 None:intergenic
GATATTCGTAAACGTTTCAT+CGG 0.485537 2_1:-9795312 None:intergenic
TTGTTTATTAGGGGAACGTC+CGG 0.502136 2_1:-9794093 None:intergenic
ATATTCGTAAACGTTTCATC+GGG 0.505400 2_1:-9795311 None:intergenic
ATCGGACACTCCAACACAGC+TGG 0.520943 2_1:-9795407 None:intergenic
TGGCACGGCGTGGTTGTGAT+CGG 0.521456 2_1:-9795201 None:intergenic
GTGTCCGATGTTCTCGGAGA+AGG 0.522529 2_1:+9795421 Msa0193950:CDS
TTCTGAGTCTTTGTTTGATG+CGG 0.524236 2_1:-9795258 None:intergenic
TGATTCAATTCCCTCTAACA+TGG 0.528817 2_1:+9794386 Msa0193950:exon
AGGAGTGGTGCCGGCGCCGG+TGG 0.532501 2_1:+9795533 Msa0193950:CDS
GTAGTTTCTTGGTGGTGGCA+CGG 0.532781 2_1:-9795216 None:intergenic
AGAGGTAGGAGGAGTGGTGC+CGG 0.538061 2_1:+9795524 Msa0193950:CDS
AAGTGGATATATGCGCAGTT+GGG 0.542027 2_1:+9795678 Msa0193950:three_prime_UTR
GTGATATGATATTTATAAAG+TGG 0.545047 2_1:-9794262 None:intergenic
GATCGGATCGCCAGCTGTGT+TGG 0.548031 2_1:+9795397 Msa0193950:CDS
GGATAAGGGGAACCTTTGAT+GGG 0.548989 2_1:-9794770 None:intergenic
GTGTTGCGGTAGTTTCTTGG+TGG 0.552712 2_1:-9795224 None:intergenic
GATGATCTTTCCATGTTAGA+GGG 0.558105 2_1:-9794396 None:intergenic
ATTCCAATGAAGAATGTGGA+AGG 0.559865 2_1:+9794695 Msa0193950:CDS
GGAGAAGGAAGTGTCGATGT+TGG 0.562271 2_1:+9795436 Msa0193950:CDS
CATTATCATTTGTTTATTAG+GGG 0.567478 2_1:-9794102 None:intergenic
GGAGAGTGCCCTCTAAAACT+AGG 0.567912 2_1:-9794166 None:intergenic
GAATGAATACCTTGGATAAG+GGG 0.571511 2_1:-9794783 None:intergenic
CGGTGTTGTTGCTGGTGTTG+CGG 0.572453 2_1:-9795238 None:intergenic
TAATCACTCTTAAAAGGTGT+CGG 0.573234 2_1:-9794284 None:intergenic
CGCCGGTGGTGATGTTAGTG+TGG 0.574656 2_1:+9795547 Msa0193950:CDS
CTCCGGCAACTCTCCGAGAT+CGG 0.577094 2_1:-9795483 None:intergenic
CAAACTAAACCCAACAAACC+CGG 0.579370 2_1:-9795630 None:intergenic
TTTGGAGATGTGGAGGCGAT+CGG 0.579590 2_1:+9795380 Msa0193950:CDS
TCCCACACTAACATCACCAC+CGG 0.582238 2_1:-9795549 None:intergenic
GCTTTGTGGAGACTTATTGG+TGG 0.582983 2_1:-9794142 None:intergenic
AGAAATTCCAATGAAGAATG+TGG 0.583073 2_1:+9794691 Msa0193950:CDS
GATCGGAGGTGTATGTTACA+AGG 0.587899 2_1:-9795184 None:intergenic
TATGTTACAAGGAGAACGGT+GGG 0.590777 2_1:-9795173 None:intergenic
ACCTAATTAAGCATAGAAAG+AGG 0.591509 2_1:-9794237 None:intergenic
ACTTCCTTCTCCGAGAACAT+CGG 0.596708 2_1:-9795425 None:intergenic
GAAAATTCAATAATTGCCAC+CGG 0.597634 2_1:+9795338 Msa0193950:CDS
ACTAACATCACCACCGGCGC+CGG 0.599715 2_1:-9795543 None:intergenic
CTCCAAGCCCATGAATCAGA+CGG 0.600001 2_1:-9794731 None:intergenic
AGGATGGTTTGGAGATGTGG+AGG 0.602416 2_1:+9795373 Msa0193950:CDS
GCCGGTGGTGATGTTAGTGT+GGG 0.605737 2_1:+9795548 Msa0193950:CDS
AGAGTTGCCGGAGTGTTCGA+CGG 0.606059 2_1:+9795493 Msa0193950:CDS
CCATCCTCCTAACTCATCAC+CGG 0.608572 2_1:-9795357 None:intergenic
TTCCAATGAAGAATGTGGAA+GGG 0.616216 2_1:+9794696 Msa0193950:CDS
CAAAACACCGTCGAACACTC+CGG 0.616354 2_1:-9795500 None:intergenic
CACGGCGTGGTTGTGATCGG+AGG 0.619714 2_1:-9795198 None:intergenic
TCAAAGGTTCCCCTTATCCA+AGG 0.623779 2_1:+9794774 Msa0193950:CDS
GAGCAATTAGCTTCAACTAG+TGG 0.632709 2_1:-9795572 None:intergenic
CCGGTGATGAGTTAGGAGGA+TGG 0.646123 2_1:+9795357 Msa0193950:CDS
GGTGTATGTTACAAGGAGAA+CGG 0.648738 2_1:-9795177 None:intergenic
CTATAGCTCGAAATTGACAG+TGG 0.649288 2_1:+9794321 Msa0193950:five_prime_UTR
TTCTTGGTGGTGGCACGGCG+TGG 0.655603 2_1:-9795211 None:intergenic
TCCTCCTAACTCATCACCGG+TGG 0.656567 2_1:-9795354 None:intergenic
GGAGAACGGTGGGGTCCATG+TGG 0.658885 2_1:-9795163 None:intergenic
TGATAATAATTACAAGCACG+TGG 0.659338 2_1:-9795712 None:intergenic
ACAAGTAGAAAGAAACCACA+TGG 0.663213 2_1:+9795148 Msa0193950:CDS
GCCACCGGTGATGAGTTAGG+AGG 0.688601 2_1:+9795353 Msa0193950:CDS
GTATGTTACAAGGAGAACGG+TGG 0.715629 2_1:-9795174 None:intergenic
CAAGCCCATGAATCAGACGG+TGG 0.730326 2_1:-9794728 None:intergenic
ATGTTACAAGGAGAACGGTG+GGG 0.778163 2_1:-9795172 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATATTGATTAATATTGA+TGG - chr2_1:9794457-9794476 None:intergenic 10.0%
!! AAAATGTAAATATGTATAAT+AGG + chr2_1:9794645-9794664 Msa0193950:intron 10.0%
!!! TTTTATTTTTTTAATTTTCC+GGG + chr2_1:9795612-9795631 Msa0193950:three_prime_UTR 10.0%
!!! TTAATATTGATTAATATTGA+TGG - chr2_1:9794457-9794476 None:intergenic 10.0%
!! AAAATGTAAATATGTATAAT+AGG + chr2_1:9794645-9794664 Msa0193950:intron 10.0%
!!! TTTTATTTTTTTAATTTTCC+GGG + chr2_1:9795612-9795631 Msa0193950:three_prime_UTR 10.0%
!! TCATTATCATTTGTTTATTA+GGG - chr2_1:9794106-9794125 None:intergenic 15.0%
!! ATCATTATCATTTGTTTATT+AGG - chr2_1:9794107-9794126 None:intergenic 15.0%
!! TCATTATCATTTGTTTATTA+GGG - chr2_1:9794106-9794125 None:intergenic 15.0%
!! ATCATTATCATTTGTTTATT+AGG - chr2_1:9794107-9794126 None:intergenic 15.0%
!! CATTATCATTTGTTTATTAG+GGG - chr2_1:9794105-9794124 None:intergenic 20.0%
!! TTGAAGAAGATTATAAAGAT+TGG - chr2_1:9794190-9794209 None:intergenic 20.0%
!! GTGATATGATATTTATAAAG+TGG - chr2_1:9794265-9794284 None:intergenic 20.0%
!!! TTTTTGTGATATGAATGTAA+GGG - chr2_1:9794814-9794833 None:intergenic 20.0%
!!! TTTTTTGTGATATGAATGTA+AGG - chr2_1:9794815-9794834 None:intergenic 20.0%
!! AATCTTATAAGAATTGCATA+CGG - chr2_1:9795056-9795075 None:intergenic 20.0%
!! TCTTATAAGATTTACTCATA+TGG + chr2_1:9795064-9795083 Msa0193950:intron 20.0%
!! CTTATAAGATTTACTCATAT+GGG + chr2_1:9795065-9795084 Msa0193950:intron 20.0%
!! TTATAAGATTTACTCATATG+GGG + chr2_1:9795066-9795085 Msa0193950:intron 20.0%
!!! TTTTTTTGACGATACTTAAT+AGG - chr2_1:9795760-9795779 None:intergenic 20.0%
!! CATGAAATTAAGAACTTAAT+AGG - chr2_1:9795800-9795819 None:intergenic 20.0%
!! AATGTTATCTGCAAAAAAAA+AGG - chr2_1:9795853-9795872 None:intergenic 20.0%
!! CATTATCATTTGTTTATTAG+GGG - chr2_1:9794105-9794124 None:intergenic 20.0%
!! TTGAAGAAGATTATAAAGAT+TGG - chr2_1:9794190-9794209 None:intergenic 20.0%
!! GTGATATGATATTTATAAAG+TGG - chr2_1:9794265-9794284 None:intergenic 20.0%
!!! TTTTTGTGATATGAATGTAA+GGG - chr2_1:9794814-9794833 None:intergenic 20.0%
!!! TTTTTTGTGATATGAATGTA+AGG - chr2_1:9794815-9794834 None:intergenic 20.0%
!! AATCTTATAAGAATTGCATA+CGG - chr2_1:9795056-9795075 None:intergenic 20.0%
!! TCTTATAAGATTTACTCATA+TGG + chr2_1:9795064-9795083 Msa0193950:intron 20.0%
!! CTTATAAGATTTACTCATAT+GGG + chr2_1:9795065-9795084 Msa0193950:intron 20.0%
!! TTATAAGATTTACTCATATG+GGG + chr2_1:9795066-9795085 Msa0193950:intron 20.0%
!!! TTTTTTTGACGATACTTAAT+AGG - chr2_1:9795760-9795779 None:intergenic 20.0%
!! CATGAAATTAAGAACTTAAT+AGG - chr2_1:9795800-9795819 None:intergenic 20.0%
!! AATGTTATCTGCAAAAAAAA+AGG - chr2_1:9795853-9795872 None:intergenic 20.0%
!! TTTTGTGATATGAATGTAAG+GGG - chr2_1:9794813-9794832 None:intergenic 25.0%
! AGGACAATGTTTCAATAATT+TGG - chr2_1:9794904-9794923 None:intergenic 25.0%
!!! TATTAGGGCTTTAAATTGAA+AGG - chr2_1:9794924-9794943 None:intergenic 25.0%
! CAAAAATGAAATACAACAAG+TGG + chr2_1:9795661-9795680 Msa0193950:three_prime_UTR 25.0%
! GCAAAAAAAAAGGATAACTA+CGG - chr2_1:9795843-9795862 None:intergenic 25.0%
!! TTTTGTGATATGAATGTAAG+GGG - chr2_1:9794813-9794832 None:intergenic 25.0%
! AGGACAATGTTTCAATAATT+TGG - chr2_1:9794904-9794923 None:intergenic 25.0%
!!! TATTAGGGCTTTAAATTGAA+AGG - chr2_1:9794924-9794943 None:intergenic 25.0%
! CAAAAATGAAATACAACAAG+TGG + chr2_1:9795661-9795680 Msa0193950:three_prime_UTR 25.0%
! GCAAAAAAAAAGGATAACTA+CGG - chr2_1:9795843-9795862 None:intergenic 25.0%
ACCTCTTTCTATGCTTAATT+AGG + chr2_1:9794236-9794255 Msa0193950:five_prime_UTR 30.0%
ACCTAATTAAGCATAGAAAG+AGG - chr2_1:9794240-9794259 None:intergenic 30.0%
! TAATCACTCTTAAAAGGTGT+CGG - chr2_1:9794287-9794306 None:intergenic 30.0%
!! ACACCTTTTAAGAGTGATTA+AGG + chr2_1:9794287-9794306 Msa0193950:five_prime_UTR 30.0%
!! CACCTTTTAAGAGTGATTAA+GGG + chr2_1:9794288-9794307 Msa0193950:five_prime_UTR 30.0%
! ACACTCAAATTTTGCTTAGA+AGG - chr2_1:9794545-9794564 None:intergenic 30.0%
GTAAATATGTATAATAGGCG+AGG + chr2_1:9794650-9794669 Msa0193950:intron 30.0%
AGAAATTCCAATGAAGAATG+TGG + chr2_1:9794691-9794710 Msa0193950:CDS 30.0%
AGAATGAATACCTTGGATAA+GGG - chr2_1:9794787-9794806 None:intergenic 30.0%
! GGCTTTTATGCAAAAATCAA+AGG - chr2_1:9794883-9794902 None:intergenic 30.0%
CCTCGATCTCTAATATATTA+GGG - chr2_1:9794939-9794958 None:intergenic 30.0%
ACCTCGATCTCTAATATATT+AGG - chr2_1:9794940-9794959 None:intergenic 30.0%
! TTACTCATATGGGGAAATTT+TGG + chr2_1:9795075-9795094 Msa0193950:intron 30.0%
ATATTCGTAAACGTTTCATC+GGG - chr2_1:9795314-9795333 None:intergenic 30.0%
GATATTCGTAAACGTTTCAT+CGG - chr2_1:9795315-9795334 None:intergenic 30.0%
GAAAATTCAATAATTGCCAC+CGG + chr2_1:9795338-9795357 Msa0193950:CDS 30.0%
!!! TTTTAATTTTCCGGGTTTGT+TGG + chr2_1:9795620-9795639 Msa0193950:three_prime_UTR 30.0%
!! TTTAATTTTCCGGGTTTGTT+GGG + chr2_1:9795621-9795640 Msa0193950:three_prime_UTR 30.0%
TGATAATAATTACAAGCACG+TGG - chr2_1:9795715-9795734 None:intergenic 30.0%
ACCTCTTTCTATGCTTAATT+AGG + chr2_1:9794236-9794255 Msa0193950:five_prime_UTR 30.0%
ACCTAATTAAGCATAGAAAG+AGG - chr2_1:9794240-9794259 None:intergenic 30.0%
! TAATCACTCTTAAAAGGTGT+CGG - chr2_1:9794287-9794306 None:intergenic 30.0%
!! ACACCTTTTAAGAGTGATTA+AGG + chr2_1:9794287-9794306 Msa0193950:five_prime_UTR 30.0%
!! CACCTTTTAAGAGTGATTAA+GGG + chr2_1:9794288-9794307 Msa0193950:five_prime_UTR 30.0%
! ACACTCAAATTTTGCTTAGA+AGG - chr2_1:9794545-9794564 None:intergenic 30.0%
GTAAATATGTATAATAGGCG+AGG + chr2_1:9794650-9794669 Msa0193950:intron 30.0%
AGAAATTCCAATGAAGAATG+TGG + chr2_1:9794691-9794710 Msa0193950:CDS 30.0%
AGAATGAATACCTTGGATAA+GGG - chr2_1:9794787-9794806 None:intergenic 30.0%
! GGCTTTTATGCAAAAATCAA+AGG - chr2_1:9794883-9794902 None:intergenic 30.0%
CCTCGATCTCTAATATATTA+GGG - chr2_1:9794939-9794958 None:intergenic 30.0%
ACCTCGATCTCTAATATATT+AGG - chr2_1:9794940-9794959 None:intergenic 30.0%
! TTACTCATATGGGGAAATTT+TGG + chr2_1:9795075-9795094 Msa0193950:intron 30.0%
ATATTCGTAAACGTTTCATC+GGG - chr2_1:9795314-9795333 None:intergenic 30.0%
GATATTCGTAAACGTTTCAT+CGG - chr2_1:9795315-9795334 None:intergenic 30.0%
GAAAATTCAATAATTGCCAC+CGG + chr2_1:9795338-9795357 Msa0193950:CDS 30.0%
!!! TTTTAATTTTCCGGGTTTGT+TGG + chr2_1:9795620-9795639 Msa0193950:three_prime_UTR 30.0%
!! TTTAATTTTCCGGGTTTGTT+GGG + chr2_1:9795621-9795640 Msa0193950:three_prime_UTR 30.0%
TGATAATAATTACAAGCACG+TGG - chr2_1:9795715-9795734 None:intergenic 30.0%
!!! ACAAAGCTCCTAGTTTTAGA+GGG + chr2_1:9794158-9794177 Msa0193950:five_prime_UTR 35.0%
GACCCTTAATCACTCTTAAA+AGG - chr2_1:9794293-9794312 None:intergenic 35.0%
TGATTCAATTCCCTCTAACA+TGG + chr2_1:9794386-9794405 Msa0193950:exon 35.0%
GATGATCTTTCCATGTTAGA+GGG - chr2_1:9794399-9794418 None:intergenic 35.0%
TGATGATCTTTCCATGTTAG+AGG - chr2_1:9794400-9794419 None:intergenic 35.0%
ATAGGCGAGGTATAAAGAAA+AGG + chr2_1:9794663-9794682 Msa0193950:intron 35.0%
TAGGCGAGGTATAAAGAAAA+GGG + chr2_1:9794664-9794683 Msa0193950:intron 35.0%
ATTCCAATGAAGAATGTGGA+AGG + chr2_1:9794695-9794714 Msa0193950:CDS 35.0%
TTCCAATGAAGAATGTGGAA+GGG + chr2_1:9794696-9794715 Msa0193950:CDS 35.0%
TATGGTCAAAAACCCATCAA+AGG + chr2_1:9794758-9794777 Msa0193950:CDS 35.0%
GAATGAATACCTTGGATAAG+GGG - chr2_1:9794786-9794805 None:intergenic 35.0%
GAGAATGAATACCTTGGATA+AGG - chr2_1:9794788-9794807 None:intergenic 35.0%
CCCTAATATATTAGAGATCG+AGG + chr2_1:9794936-9794955 Msa0193950:intron 35.0%
!! CTTTCTACTTGTTTTCTTGC+TGG - chr2_1:9795140-9795159 None:intergenic 35.0%
ACAAGTAGAAAGAAACCACA+TGG + chr2_1:9795148-9795167 Msa0193950:CDS 35.0%
! TTCTGAGTCTTTGTTTGATG+CGG - chr2_1:9795261-9795280 None:intergenic 35.0%
TTTCATGCTTGATTCATAGC+TGG + chr2_1:9795813-9795832 Msa0193950:three_prime_UTR 35.0%
!!! ACAAAGCTCCTAGTTTTAGA+GGG + chr2_1:9794158-9794177 Msa0193950:five_prime_UTR 35.0%
GACCCTTAATCACTCTTAAA+AGG - chr2_1:9794293-9794312 None:intergenic 35.0%
TGATTCAATTCCCTCTAACA+TGG + chr2_1:9794386-9794405 Msa0193950:exon 35.0%
GATGATCTTTCCATGTTAGA+GGG - chr2_1:9794399-9794418 None:intergenic 35.0%
TGATGATCTTTCCATGTTAG+AGG - chr2_1:9794400-9794419 None:intergenic 35.0%
ATAGGCGAGGTATAAAGAAA+AGG + chr2_1:9794663-9794682 Msa0193950:intron 35.0%
TAGGCGAGGTATAAAGAAAA+GGG + chr2_1:9794664-9794683 Msa0193950:intron 35.0%
ATTCCAATGAAGAATGTGGA+AGG + chr2_1:9794695-9794714 Msa0193950:CDS 35.0%
TTCCAATGAAGAATGTGGAA+GGG + chr2_1:9794696-9794715 Msa0193950:CDS 35.0%
TATGGTCAAAAACCCATCAA+AGG + chr2_1:9794758-9794777 Msa0193950:CDS 35.0%
GAATGAATACCTTGGATAAG+GGG - chr2_1:9794786-9794805 None:intergenic 35.0%
GAGAATGAATACCTTGGATA+AGG - chr2_1:9794788-9794807 None:intergenic 35.0%
CCCTAATATATTAGAGATCG+AGG + chr2_1:9794936-9794955 Msa0193950:intron 35.0%
!! CTTTCTACTTGTTTTCTTGC+TGG - chr2_1:9795140-9795159 None:intergenic 35.0%
ACAAGTAGAAAGAAACCACA+TGG + chr2_1:9795148-9795167 Msa0193950:CDS 35.0%
! TTCTGAGTCTTTGTTTGATG+CGG - chr2_1:9795261-9795280 None:intergenic 35.0%
TTTCATGCTTGATTCATAGC+TGG + chr2_1:9795813-9795832 Msa0193950:three_prime_UTR 35.0%
TTGTTTATTAGGGGAACGTC+CGG - chr2_1:9794096-9794115 None:intergenic 40.0%
!! CTCTAAAACTAGGAGCTTTG+TGG - chr2_1:9794159-9794178 None:intergenic 40.0%
!!! CACAAAGCTCCTAGTTTTAG+AGG + chr2_1:9794157-9794176 Msa0193950:five_prime_UTR 40.0%
CTATAGCTCGAAATTGACAG+TGG + chr2_1:9794321-9794340 Msa0193950:five_prime_UTR 40.0%
CACTCTCTTCTTCTGCTAAA+AGG + chr2_1:9794418-9794437 Msa0193950:CDS 40.0%
!!! ATGGGGAAATTTTGGAACAG+AGG + chr2_1:9795083-9795102 Msa0193950:intron 40.0%
TATGTTACAAGGAGAACGGT+GGG - chr2_1:9795176-9795195 None:intergenic 40.0%
GGTGTATGTTACAAGGAGAA+CGG - chr2_1:9795180-9795199 None:intergenic 40.0%
!! TCTTGTTCTTGTTCTGGTTC+AGG - chr2_1:9795290-9795309 None:intergenic 40.0%
! GAGCAATTAGCTTCAACTAG+TGG - chr2_1:9795575-9795594 None:intergenic 40.0%
CAAACTAAACCCAACAAACC+CGG - chr2_1:9795633-9795652 None:intergenic 40.0%
AAGTGGATATATGCGCAGTT+GGG + chr2_1:9795678-9795697 Msa0193950:three_prime_UTR 40.0%
TTGTTTATTAGGGGAACGTC+CGG - chr2_1:9794096-9794115 None:intergenic 40.0%
!! CTCTAAAACTAGGAGCTTTG+TGG - chr2_1:9794159-9794178 None:intergenic 40.0%
!!! CACAAAGCTCCTAGTTTTAG+AGG + chr2_1:9794157-9794176 Msa0193950:five_prime_UTR 40.0%
CTATAGCTCGAAATTGACAG+TGG + chr2_1:9794321-9794340 Msa0193950:five_prime_UTR 40.0%
CACTCTCTTCTTCTGCTAAA+AGG + chr2_1:9794418-9794437 Msa0193950:CDS 40.0%
!!! ATGGGGAAATTTTGGAACAG+AGG + chr2_1:9795083-9795102 Msa0193950:intron 40.0%
TATGTTACAAGGAGAACGGT+GGG - chr2_1:9795176-9795195 None:intergenic 40.0%
GGTGTATGTTACAAGGAGAA+CGG - chr2_1:9795180-9795199 None:intergenic 40.0%
!! TCTTGTTCTTGTTCTGGTTC+AGG - chr2_1:9795290-9795309 None:intergenic 40.0%
! GAGCAATTAGCTTCAACTAG+TGG - chr2_1:9795575-9795594 None:intergenic 40.0%
CAAACTAAACCCAACAAACC+CGG - chr2_1:9795633-9795652 None:intergenic 40.0%
AAGTGGATATATGCGCAGTT+GGG + chr2_1:9795678-9795697 Msa0193950:three_prime_UTR 40.0%
GCTTTGTGGAGACTTATTGG+TGG - chr2_1:9794145-9794164 None:intergenic 45.0%
! GGAGCTTTGTGGAGACTTAT+TGG - chr2_1:9794148-9794167 None:intergenic 45.0%
GTCCCTTCCACATTCTTCAT+TGG - chr2_1:9794701-9794720 None:intergenic 45.0%
TCATGGGCTTGGAGAAAGTA+TGG + chr2_1:9794740-9794759 Msa0193950:CDS 45.0%
GGATAAGGGGAACCTTTGAT+GGG - chr2_1:9794773-9794792 None:intergenic 45.0%
TGGATAAGGGGAACCTTTGA+TGG - chr2_1:9794774-9794793 None:intergenic 45.0%
TCAAAGGTTCCCCTTATCCA+AGG + chr2_1:9794774-9794793 Msa0193950:CDS 45.0%
GGGGATGAGAATGAATACCT+TGG - chr2_1:9794794-9794813 None:intergenic 45.0%
GCGATGAAATATGCATGCTG+CGG + chr2_1:9794965-9794984 Msa0193950:intron 45.0%
CAAAACTACGTGCAGTTCTG+CGG - chr2_1:9795032-9795051 None:intergenic 45.0%
ATGTTACAAGGAGAACGGTG+GGG - chr2_1:9795175-9795194 None:intergenic 45.0%
GTATGTTACAAGGAGAACGG+TGG - chr2_1:9795177-9795196 None:intergenic 45.0%
! GATCGGAGGTGTATGTTACA+AGG - chr2_1:9795187-9795206 None:intergenic 45.0%
TCGGGTTCTTGTTCTTGTTC+TGG - chr2_1:9795296-9795315 None:intergenic 45.0%
GATGAGTTAGGAGGATGGTT+TGG + chr2_1:9795362-9795381 Msa0193950:CDS 45.0%
ACTTCCTTCTCCGAGAACAT+CGG - chr2_1:9795428-9795447 None:intergenic 45.0%
!! GAGAAGGAAGTGTCGATGTT+GGG + chr2_1:9795437-9795456 Msa0193950:CDS 45.0%
ATGTCGTTGTTTGCCGATCT+CGG + chr2_1:9795470-9795489 Msa0193950:CDS 45.0%
!! CGGGTTTGTTGGGTTTAGTT+TGG + chr2_1:9795631-9795650 Msa0193950:three_prime_UTR 45.0%
CAAGTGGATATATGCGCAGT+TGG + chr2_1:9795677-9795696 Msa0193950:three_prime_UTR 45.0%
GCTTTGTGGAGACTTATTGG+TGG - chr2_1:9794145-9794164 None:intergenic 45.0%
! GGAGCTTTGTGGAGACTTAT+TGG - chr2_1:9794148-9794167 None:intergenic 45.0%
GTCCCTTCCACATTCTTCAT+TGG - chr2_1:9794701-9794720 None:intergenic 45.0%
TCATGGGCTTGGAGAAAGTA+TGG + chr2_1:9794740-9794759 Msa0193950:CDS 45.0%
GGATAAGGGGAACCTTTGAT+GGG - chr2_1:9794773-9794792 None:intergenic 45.0%
TGGATAAGGGGAACCTTTGA+TGG - chr2_1:9794774-9794793 None:intergenic 45.0%
TCAAAGGTTCCCCTTATCCA+AGG + chr2_1:9794774-9794793 Msa0193950:CDS 45.0%
GGGGATGAGAATGAATACCT+TGG - chr2_1:9794794-9794813 None:intergenic 45.0%
GCGATGAAATATGCATGCTG+CGG + chr2_1:9794965-9794984 Msa0193950:intron 45.0%
CAAAACTACGTGCAGTTCTG+CGG - chr2_1:9795032-9795051 None:intergenic 45.0%
ATGTTACAAGGAGAACGGTG+GGG - chr2_1:9795175-9795194 None:intergenic 45.0%
GTATGTTACAAGGAGAACGG+TGG - chr2_1:9795177-9795196 None:intergenic 45.0%
! GATCGGAGGTGTATGTTACA+AGG - chr2_1:9795187-9795206 None:intergenic 45.0%
TCGGGTTCTTGTTCTTGTTC+TGG - chr2_1:9795296-9795315 None:intergenic 45.0%
GATGAGTTAGGAGGATGGTT+TGG + chr2_1:9795362-9795381 Msa0193950:CDS 45.0%
ACTTCCTTCTCCGAGAACAT+CGG - chr2_1:9795428-9795447 None:intergenic 45.0%
!! GAGAAGGAAGTGTCGATGTT+GGG + chr2_1:9795437-9795456 Msa0193950:CDS 45.0%
ATGTCGTTGTTTGCCGATCT+CGG + chr2_1:9795470-9795489 Msa0193950:CDS 45.0%
!! CGGGTTTGTTGGGTTTAGTT+TGG + chr2_1:9795631-9795650 Msa0193950:three_prime_UTR 45.0%
CAAGTGGATATATGCGCAGT+TGG + chr2_1:9795677-9795696 Msa0193950:three_prime_UTR 45.0%
!!! TTTTTATTTTTTTAATTTTC+CGG + chr2_1:9795611-9795630 Msa0193950:three_prime_UTR 5.0%
!!! TTTTTATTTTTTTAATTTTC+CGG + chr2_1:9795611-9795630 Msa0193950:three_prime_UTR 5.0%
!! GGAGAGTGCCCTCTAAAACT+AGG - chr2_1:9794169-9794188 None:intergenic 50.0%
ACACTCCACCGTCTGATTCA+TGG + chr2_1:9794723-9794742 Msa0193950:CDS 50.0%
CACTCCACCGTCTGATTCAT+GGG + chr2_1:9794724-9794743 Msa0193950:CDS 50.0%
CTCCAAGCCCATGAATCAGA+CGG - chr2_1:9794734-9794753 None:intergenic 50.0%
!! GTAGTTTCTTGGTGGTGGCA+CGG - chr2_1:9795219-9795238 None:intergenic 50.0%
TTGCGGTAGTTTCTTGGTGG+TGG - chr2_1:9795224-9795243 None:intergenic 50.0%
GTGTTGCGGTAGTTTCTTGG+TGG - chr2_1:9795227-9795246 None:intergenic 50.0%
!! CTGGTGTTGCGGTAGTTTCT+TGG - chr2_1:9795230-9795249 None:intergenic 50.0%
!! GTTTGATGCGGTGTTGTTGC+TGG - chr2_1:9795249-9795268 None:intergenic 50.0%
ATTGCCACCGGTGATGAGTT+AGG + chr2_1:9795350-9795369 Msa0193950:CDS 50.0%
CCATCCTCCTAACTCATCAC+CGG - chr2_1:9795360-9795379 None:intergenic 50.0%
! AGGAGGATGGTTTGGAGATG+TGG + chr2_1:9795370-9795389 Msa0193950:CDS 50.0%
! AGGATGGTTTGGAGATGTGG+AGG + chr2_1:9795373-9795392 Msa0193950:CDS 50.0%
TTTGGAGATGTGGAGGCGAT+CGG + chr2_1:9795380-9795399 Msa0193950:CDS 50.0%
! GTTGGAGTGTCCGATGTTCT+CGG + chr2_1:9795415-9795434 Msa0193950:CDS 50.0%
!! GGAGAAGGAAGTGTCGATGT+TGG + chr2_1:9795436-9795455 Msa0193950:CDS 50.0%
!! AGTGTCGATGTTGGGAGAAG+AGG + chr2_1:9795445-9795464 Msa0193950:CDS 50.0%
CAAAACACCGTCGAACACTC+CGG - chr2_1:9795503-9795522 None:intergenic 50.0%
!!! TGTTCGACGGTGTTTTGGAG+AGG + chr2_1:9795506-9795525 Msa0193950:CDS 50.0%
!! TTTTGGAGAGGTAGGAGGAG+TGG + chr2_1:9795518-9795537 Msa0193950:CDS 50.0%
TCCCACACTAACATCACCAC+CGG - chr2_1:9795552-9795571 None:intergenic 50.0%
!! GGAGAGTGCCCTCTAAAACT+AGG - chr2_1:9794169-9794188 None:intergenic 50.0%
ACACTCCACCGTCTGATTCA+TGG + chr2_1:9794723-9794742 Msa0193950:CDS 50.0%
CACTCCACCGTCTGATTCAT+GGG + chr2_1:9794724-9794743 Msa0193950:CDS 50.0%
CTCCAAGCCCATGAATCAGA+CGG - chr2_1:9794734-9794753 None:intergenic 50.0%
!! GTAGTTTCTTGGTGGTGGCA+CGG - chr2_1:9795219-9795238 None:intergenic 50.0%
TTGCGGTAGTTTCTTGGTGG+TGG - chr2_1:9795224-9795243 None:intergenic 50.0%
GTGTTGCGGTAGTTTCTTGG+TGG - chr2_1:9795227-9795246 None:intergenic 50.0%
!! CTGGTGTTGCGGTAGTTTCT+TGG - chr2_1:9795230-9795249 None:intergenic 50.0%
!! GTTTGATGCGGTGTTGTTGC+TGG - chr2_1:9795249-9795268 None:intergenic 50.0%
ATTGCCACCGGTGATGAGTT+AGG + chr2_1:9795350-9795369 Msa0193950:CDS 50.0%
CCATCCTCCTAACTCATCAC+CGG - chr2_1:9795360-9795379 None:intergenic 50.0%
! AGGAGGATGGTTTGGAGATG+TGG + chr2_1:9795370-9795389 Msa0193950:CDS 50.0%
! AGGATGGTTTGGAGATGTGG+AGG + chr2_1:9795373-9795392 Msa0193950:CDS 50.0%
TTTGGAGATGTGGAGGCGAT+CGG + chr2_1:9795380-9795399 Msa0193950:CDS 50.0%
! GTTGGAGTGTCCGATGTTCT+CGG + chr2_1:9795415-9795434 Msa0193950:CDS 50.0%
!! GGAGAAGGAAGTGTCGATGT+TGG + chr2_1:9795436-9795455 Msa0193950:CDS 50.0%
!! AGTGTCGATGTTGGGAGAAG+AGG + chr2_1:9795445-9795464 Msa0193950:CDS 50.0%
CAAAACACCGTCGAACACTC+CGG - chr2_1:9795503-9795522 None:intergenic 50.0%
!!! TGTTCGACGGTGTTTTGGAG+AGG + chr2_1:9795506-9795525 Msa0193950:CDS 50.0%
!! TTTTGGAGAGGTAGGAGGAG+TGG + chr2_1:9795518-9795537 Msa0193950:CDS 50.0%
TCCCACACTAACATCACCAC+CGG - chr2_1:9795552-9795571 None:intergenic 50.0%
CAAGCCCATGAATCAGACGG+TGG - chr2_1:9794731-9794750 None:intergenic 55.0%
CACCGTCTGATTCATGGGCT+TGG + chr2_1:9794729-9794748 Msa0193950:CDS 55.0%
!! CGGTGTTGTTGCTGGTGTTG+CGG - chr2_1:9795241-9795260 None:intergenic 55.0%
TCCTCCTAACTCATCACCGG+TGG - chr2_1:9795357-9795376 None:intergenic 55.0%
CCGGTGATGAGTTAGGAGGA+TGG + chr2_1:9795357-9795376 Msa0193950:CDS 55.0%
ATCGGACACTCCAACACAGC+TGG - chr2_1:9795410-9795429 None:intergenic 55.0%
GTGTCCGATGTTCTCGGAGA+AGG + chr2_1:9795421-9795440 Msa0193950:CDS 55.0%
! AGAGTTGCCGGAGTGTTCGA+CGG + chr2_1:9795493-9795512 Msa0193950:CDS 55.0%
!! CGGAGTGTTCGACGGTGTTT+TGG + chr2_1:9795501-9795520 Msa0193950:CDS 55.0%
!!! CGACGGTGTTTTGGAGAGGT+AGG + chr2_1:9795510-9795529 Msa0193950:CDS 55.0%
!!! CGGTGTTTTGGAGAGGTAGG+AGG + chr2_1:9795513-9795532 Msa0193950:CDS 55.0%
! GCCGGTGGTGATGTTAGTGT+GGG + chr2_1:9795548-9795567 Msa0193950:CDS 55.0%
CAAGCCCATGAATCAGACGG+TGG - chr2_1:9794731-9794750 None:intergenic 55.0%
CACCGTCTGATTCATGGGCT+TGG + chr2_1:9794729-9794748 Msa0193950:CDS 55.0%
!! CGGTGTTGTTGCTGGTGTTG+CGG - chr2_1:9795241-9795260 None:intergenic 55.0%
TCCTCCTAACTCATCACCGG+TGG - chr2_1:9795357-9795376 None:intergenic 55.0%
CCGGTGATGAGTTAGGAGGA+TGG + chr2_1:9795357-9795376 Msa0193950:CDS 55.0%
ATCGGACACTCCAACACAGC+TGG - chr2_1:9795410-9795429 None:intergenic 55.0%
GTGTCCGATGTTCTCGGAGA+AGG + chr2_1:9795421-9795440 Msa0193950:CDS 55.0%
! AGAGTTGCCGGAGTGTTCGA+CGG + chr2_1:9795493-9795512 Msa0193950:CDS 55.0%
!! CGGAGTGTTCGACGGTGTTT+TGG + chr2_1:9795501-9795520 Msa0193950:CDS 55.0%
!!! CGACGGTGTTTTGGAGAGGT+AGG + chr2_1:9795510-9795529 Msa0193950:CDS 55.0%
!!! CGGTGTTTTGGAGAGGTAGG+AGG + chr2_1:9795513-9795532 Msa0193950:CDS 55.0%
! GCCGGTGGTGATGTTAGTGT+GGG + chr2_1:9795548-9795567 Msa0193950:CDS 55.0%
TGGCACGGCGTGGTTGTGAT+CGG - chr2_1:9795204-9795223 None:intergenic 60.0%
GCCACCGGTGATGAGTTAGG+AGG + chr2_1:9795353-9795372 Msa0193950:CDS 60.0%
GATCGGATCGCCAGCTGTGT+TGG + chr2_1:9795397-9795416 Msa0193950:CDS 60.0%
TGCCGATCTCGGAGAGTTGC+CGG + chr2_1:9795481-9795500 Msa0193950:CDS 60.0%
CTCCGGCAACTCTCCGAGAT+CGG - chr2_1:9795486-9795505 None:intergenic 60.0%
AGAGGTAGGAGGAGTGGTGC+CGG + chr2_1:9795524-9795543 Msa0193950:CDS 60.0%
ACTAACATCACCACCGGCGC+CGG - chr2_1:9795546-9795565 None:intergenic 60.0%
! CGCCGGTGGTGATGTTAGTG+TGG + chr2_1:9795547-9795566 Msa0193950:CDS 60.0%
TGGCACGGCGTGGTTGTGAT+CGG - chr2_1:9795204-9795223 None:intergenic 60.0%
GCCACCGGTGATGAGTTAGG+AGG + chr2_1:9795353-9795372 Msa0193950:CDS 60.0%
GATCGGATCGCCAGCTGTGT+TGG + chr2_1:9795397-9795416 Msa0193950:CDS 60.0%
TGCCGATCTCGGAGAGTTGC+CGG + chr2_1:9795481-9795500 Msa0193950:CDS 60.0%
CTCCGGCAACTCTCCGAGAT+CGG - chr2_1:9795486-9795505 None:intergenic 60.0%
AGAGGTAGGAGGAGTGGTGC+CGG + chr2_1:9795524-9795543 Msa0193950:CDS 60.0%
ACTAACATCACCACCGGCGC+CGG - chr2_1:9795546-9795565 None:intergenic 60.0%
! CGCCGGTGGTGATGTTAGTG+TGG + chr2_1:9795547-9795566 Msa0193950:CDS 60.0%
GGAGAACGGTGGGGTCCATG+TGG - chr2_1:9795166-9795185 None:intergenic 65.0%
CACGGCGTGGTTGTGATCGG+AGG - chr2_1:9795201-9795220 None:intergenic 65.0%
!! TTCTTGGTGGTGGCACGGCG+TGG - chr2_1:9795214-9795233 None:intergenic 65.0%
GGAGAACGGTGGGGTCCATG+TGG - chr2_1:9795166-9795185 None:intergenic 65.0%
CACGGCGTGGTTGTGATCGG+AGG - chr2_1:9795201-9795220 None:intergenic 65.0%
!! TTCTTGGTGGTGGCACGGCG+TGG - chr2_1:9795214-9795233 None:intergenic 65.0%
!! AGGAGGAGTGGTGCCGGCGC+CGG + chr2_1:9795530-9795549 Msa0193950:CDS 75.0%
!! AGGAGGAGTGGTGCCGGCGC+CGG + chr2_1:9795530-9795549 Msa0193950:CDS 75.0%
!!! AGGAGTGGTGCCGGCGCCGG+TGG + chr2_1:9795533-9795552 Msa0193950:CDS 80.0%
!!! AGGAGTGGTGCCGGCGCCGG+TGG + chr2_1:9795533-9795552 Msa0193950:CDS 80.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 9794088 9795880 9794088 ID=Msa0193950;Name=Msa0193950
chr2_1 mRNA 9794088 9795880 9794088 ID=Msa0193950-mRNA-1;Parent=Msa0193950;Name=Msa0193950-mRNA-1;_AED=0.02;_eAED=0.02;_QI=317|1|1|1|1|1|3|279|220
chr2_1 exon 9794088 9794439 9794088 ID=Msa0193950-mRNA-1:exon:4492;Parent=Msa0193950-mRNA-1
chr2_1 exon 9794667 9794795 9794667 ID=Msa0193950-mRNA-1:exon:4493;Parent=Msa0193950-mRNA-1
chr2_1 exon 9795103 9795880 9795103 ID=Msa0193950-mRNA-1:exon:4494;Parent=Msa0193950-mRNA-1
chr2_1 five_prime_UTR 9794088 9794404 9794088 ID=Msa0193950-mRNA-1:five_prime_utr;Parent=Msa0193950-mRNA-1
chr2_1 CDS 9794405 9794439 9794405 ID=Msa0193950-mRNA-1:cds;Parent=Msa0193950-mRNA-1
chr2_1 CDS 9794667 9794795 9794667 ID=Msa0193950-mRNA-1:cds;Parent=Msa0193950-mRNA-1
chr2_1 CDS 9795103 9795601 9795103 ID=Msa0193950-mRNA-1:cds;Parent=Msa0193950-mRNA-1
chr2_1 three_prime_UTR 9795602 9795880 9795602 ID=Msa0193950-mRNA-1:three_prime_utr;Parent=Msa0193950-mRNA-1
Gene Sequence

>Msa0193950

ATGGAAAGATCATCACTCTCTTCTTCTGCTAAAAGGCGAGGTATAAAGAAAAGGGTAGTAGAAATTCCAATGAAGAATGTGGAAGGGACTAACACTCCACCGTCTGATTCATGGGCTTGGAGAAAGTATGGTCAAAAACCCATCAAAGGTTCCCCTTATCCAAGAGGATACTATAGATGTAGCAGTTCAAAGAATTGTCCAGCAAGAAAACAAGTAGAAAGAAACCACATGGACCCCACCGTTCTCCTTGTAACATACACCTCCGATCACAACCACGCCGTGCCACCACCAAGAAACTACCGCAACACCAGCAACAACACCGCATCAAACAAAGACTCAGAATCAGAACCTGAACCAGAACAAGAACAAGAACCCGATGAAACGTTTACGAATATCGAAGAAAATTCAATAATTGCCACCGGTGATGAGTTAGGAGGATGGTTTGGAGATGTGGAGGCGATCGGATCGCCAGCTGTGTTGGAGTGTCCGATGTTCTCGGAGAAGGAAGTGTCGATGTTGGGAGAAGAGGAGATGTCGTTGTTTGCCGATCTCGGAGAGTTGCCGGAGTGTTCGACGGTGTTTTGGAGAGGTAGGAGGAGTGGTGCCGGCGCCGGTGGTGATGTTAGTGTGGGACCACTAGTTGAAGCTAATTGCTCGTTGTGA
Protein sequence

>Msa0193950

MERSSLSSSAKRRGIKKRVVEIPMKNVEGTNTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKNCPARKQVERNHMDPTVLLVTYTSDHNHAVPPPRNYRNTSNNTASNKDSESEPEPEQEQEPDETFTNIEENSIIATGDELGGWFGDVEAIGSPAVLECPMFSEKEVSMLGEEEMSLFADLGELPECSTVFWRGRRSGAGAGGDVSVGPLVEANCSL*