AlfalfaGEDB | Msa1089990

M. sativa cultivar zhongmu-4 / Msa1089990

KEGG: -
GO: -
PFAM: PF02428.18

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1089990	XP_013455238.1	87.500	80	10	0	1	80	1	80	1.78e-43	145

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1089990	I3S093	87.500	80	10	0	1	80	1	80	8.50e-44	145

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006480	Msa1089990	0.812166	4.859748e-51	-8.615850e-47
Msa0025560	Msa1089990	0.815891	7.327987e-52	-8.615850e-47
Msa0070120	Msa1089990	0.812263	4.628504e-51	-8.615850e-47
Msa0095940	Msa1089990	0.823710	1.196061e-53	-8.615850e-47
Msa0101530	Msa1089990	0.817399	3.364891e-52	-8.615850e-47
Msa0117650	Msa1089990	0.842374	2.688268e-58	-8.615850e-47
Msa0603310	Msa1089990	0.832126	1.129291e-55	-8.615850e-47
Msa0615070	Msa1089990	0.802180	6.339146e-49	-8.615850e-47
Msa0631130	Msa1089990	0.838687	2.480654e-57	-8.615850e-47
Msa0637590	Msa1089990	0.825803	3.840656e-54	-8.615850e-47
Msa0637700	Msa1089990	0.827763	1.307041e-54	-8.615850e-47
Msa0644340	Msa1089990	0.818350	2.052129e-52	-8.615850e-47
Msa0669350	Msa1089990	0.816522	5.295867e-52	-8.615850e-47
Msa0682910	Msa1089990	0.806926	6.487463e-50	-8.615850e-47
Msa0714230	Msa1089990	-0.805650	1.205055e-49	-8.615850e-47
Msa0736920	Msa1089990	0.810651	1.036689e-50	-8.615850e-47
Msa0743370	Msa1089990	0.820365	7.129342e-53	-8.615850e-47
Msa0744640	Msa1089990	0.819635	1.047020e-52	-8.615850e-47
Msa0744710	Msa1089990	0.842981	1.854903e-58	-8.615850e-47
Msa0769540	Msa1089990	0.810276	1.249009e-50	-8.615850e-47
Msa0773030	Msa1089990	0.815585	8.573312e-52	-8.615850e-47
Msa0778570	Msa1089990	0.814935	1.195619e-51	-8.615850e-47
Msa0795320	Msa1089990	0.804843	1.777928e-49	-8.615850e-47
Msa0795860	Msa1089990	0.813757	2.178149e-51	-8.615850e-47
Msa0800150	Msa1089990	0.825208	5.313023e-54	-8.615850e-47
Msa0810330	Msa1089990	0.806287	8.850613e-50	-8.615850e-47
Msa0815940	Msa1089990	0.802903	4.497091e-49	-8.615850e-47
Msa0826240	Msa1089990	0.844416	7.664646e-59	-8.615850e-47
Msa0829990	Msa1089990	0.802346	5.861257e-49	-8.615850e-47
Msa0833270	Msa1089990	0.813680	2.264614e-51	-8.615850e-47
Msa0841730	Msa1089990	0.820028	8.517418e-53	-8.615850e-47
Msa0121300	Msa1089990	0.816271	6.027269e-52	-8.615850e-47
Msa0135030	Msa1089990	0.822080	2.868077e-53	-8.615850e-47
Msa0141410	Msa1089990	0.803454	3.459383e-49	-8.615850e-47
Msa0161230	Msa1089990	0.802754	4.828759e-49	-8.615850e-47
Msa0166190	Msa1089990	0.811605	6.439947e-51	-8.615850e-47
Msa0185040	Msa1089990	0.812993	3.204755e-51	-8.615850e-47
Msa0192870	Msa1089990	0.824443	8.049742e-54	-8.615850e-47
Msa0193950	Msa1089990	0.834984	2.184770e-56	-8.615850e-47
Msa0235000	Msa1089990	0.815139	1.077598e-51	-8.615850e-47
Msa0378320	Msa1089990	0.802256	6.117193e-49	-8.615850e-47
Msa0433090	Msa1089990	0.814471	1.514992e-51	-8.615850e-47
Msa0449500	Msa1089990	0.808190	3.498098e-50	-8.615850e-47
Msa0480900	Msa1089990	-0.808662	2.773678e-50	-8.615850e-47
Msa0983690	Msa1089990	-0.801652	8.137897e-49	-8.615850e-47
Msa1001120	Msa1089990	0.836012	1.200781e-56	-8.615850e-47
Msa1007900	Msa1089990	0.803876	2.827895e-49	-8.615850e-47
Msa1019420	Msa1089990	0.817834	2.684510e-52	-8.615850e-47
Msa1035050	Msa1089990	0.809468	1.864186e-50	-8.615850e-47
Msa1062060	Msa1089990	0.803001	4.292558e-49	-8.615850e-47
Msa1075090	Msa1089990	0.806935	6.460936e-50	-8.615850e-47
Msa1085820	Msa1089990	0.802710	4.930083e-49	-8.615850e-47
Msa1086310	Msa1089990	-0.808985	2.365646e-50	-8.615850e-47
Msa1089990	Msa1107220	0.830536	2.778549e-55	-8.615850e-47
Msa1089990	Msa1107250	0.806615	7.547092e-50	-8.615850e-47
Msa1089990	Msa1115980	0.806571	7.710948e-50	-8.615850e-47
Msa1089990	Msa1150760	0.800755	1.241924e-48	-8.615850e-47
Msa1089990	Msa1154060	0.807115	5.918605e-50	-8.615850e-47
Msa1089990	Msa1202110	0.832188	1.090096e-55	-8.615850e-47
Msa1089990	Msa1202800	0.823622	1.254383e-53	-8.615850e-47
Msa1089990	Msa1221270	0.803226	3.856110e-49	-8.615850e-47
Msa1089990	Msa1223710	0.824305	8.674527e-54	-8.615850e-47
Msa1089990	Msa1254870	0.831766	1.385929e-55	-8.615850e-47
Msa1089990	Msa1255210	0.808797	2.596445e-50	-8.615850e-47
Msa1089990	Msa1268390	0.805626	1.219099e-49	-8.615850e-47
Msa1089990	Msa1269200	0.833525	5.073280e-56	-8.615850e-47
Msa1089990	Msa1295650	0.804249	2.365496e-49	-8.615850e-47
Msa1089990	Msa1328430	0.831732	1.413134e-55	-8.615850e-47
Msa1089990	Msa1343600	0.812901	3.357801e-51	-8.615850e-47
Msa1089990	Msa1364690	0.803535	3.328816e-49	-8.615850e-47
Msa1089990	Msa1384700	0.800641	1.310155e-48	-8.615850e-47
Msa1089990	Msa1404050	0.818021	2.436306e-52	-8.615850e-47
Msa1089990	Msa1413450	0.821080	4.882719e-53	-8.615850e-47
Msa1089990	Msa1437590	0.816401	5.636756e-52	-8.615850e-47
Msa0265650	Msa1089990	0.812470	4.171544e-51	-8.615850e-47
Msa0271720	Msa1089990	0.802673	5.017607e-49	-8.615850e-47
Msa0273400	Msa1089990	0.843342	1.486706e-58	-8.615850e-47
Msa0283620	Msa1089990	0.822519	2.268359e-53	-8.615850e-47
Msa0285890	Msa1089990	0.814814	1.271608e-51	-8.615850e-47
Msa0286360	Msa1089990	0.827936	1.187694e-54	-8.615850e-47
Msa0287480	Msa1089990	0.805557	1.260217e-49	-8.615850e-47
Msa0313660	Msa1089990	0.824791	6.666811e-54	-8.615850e-47
Msa0314240	Msa1089990	0.828924	6.858031e-55	-8.615850e-47
Msa0320170	Msa1089990	0.801242	9.875693e-49	-8.615850e-47
Msa0331070	Msa1089990	-0.800028	1.746263e-48	-8.615850e-47
Msa0345890	Msa1089990	0.822709	2.049190e-53	-8.615850e-47
Msa0524710	Msa1089990	0.815832	7.551918e-52	-8.615850e-47
Msa0529110	Msa1089990	0.939061	2.388849e-99	-8.615850e-47
Msa0531050	Msa1089990	0.814796	1.283910e-51	-8.615850e-47
Msa0534610	Msa1089990	0.831674	1.460186e-55	-8.615850e-47
Msa0547370	Msa1089990	0.820947	5.240392e-53	-8.615850e-47
Msa0560950	Msa1089990	0.800645	1.307964e-48	-8.615850e-47
Msa0566280	Msa1089990	0.816258	6.066804e-52	-8.615850e-47
Msa0582550	Msa1089990	-0.802442	5.598455e-49	-8.615850e-47
Msa0588040	Msa1089990	0.829646	4.582942e-55	-8.615850e-47
Msa0590620	Msa1089990	-0.821023	5.031668e-53	-8.615850e-47
Msa0590810	Msa1089990	0.834641	2.665690e-56	-8.615850e-47
Msa0595270	Msa1089990	0.932185	1.244393e-94	-8.615850e-47
Msa0597370	Msa1089990	-0.808548	2.933578e-50	-8.615850e-47
Msa0597800	Msa1089990	0.820407	6.974082e-53	-8.615850e-47
Msa0597820	Msa1089990	0.826106	3.254394e-54	-8.615850e-47
Msa0850640	Msa1089990	0.830663	2.586634e-55	-8.615850e-47
Msa0901270	Msa1089990	0.825088	5.671920e-54	-8.615850e-47
Msa0901290	Msa1089990	0.812931	3.306400e-51	-8.615850e-47
Msa0904590	Msa1089990	0.800954	1.130994e-48	-8.615850e-47
Msa0905570	Msa1089990	0.819577	1.079852e-52	-8.615850e-47
Msa0925940	Msa1089990	0.808951	2.405796e-50	-8.615850e-47
Msa0966590	Msa1089990	0.806986	6.300174e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1089990	MtrunA17_Chr4g0014461	87.500	80	10	0	1	80	1	80	1.64e-47	145
Msa1089990	MtrunA17_Chr4g0014431	81.013	79	15	0	1	79	1	79	5.32e-42	131

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 20 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GAATTAATTATGTTGTAATA+TGG	0.214329	7_3:+3599330	Msa1089990:three_prime_UTR
TAATATTATTTACATAATTA+TGG	0.219522	7_3:+3599303	Msa1089990:three_prime_UTR
ACTCCTATTTGTATGTAATA+TGG	0.281587	7_3:+3599354	Msa1089990:three_prime_UTR
AGGTGTTTATCACCTGTATA+AGG	0.302748	7_3:-3599130	None:intergenic
ATTTGTATGTAATATGGATA+TGG	0.337532	7_3:+3599360	Msa1089990:three_prime_UTR
ATCCTTCTTGTCTTCGTTTG+TGG	0.338806	7_3:+3597663	Msa1089990:CDS
TATCCATATTACATACAAAT+AGG	0.368185	7_3:-3599357	None:intergenic
ATGTAATATGGATATGGATA+TGG	0.371160	7_3:+3599366	Msa1089990:three_prime_UTR
AGCAAAATGGCTTTAAAGGT+TGG	0.418570	7_3:+3597636	None:intergenic
AATTGTTGCATTGCATCAAC+TGG	0.473599	7_3:+3599166	Msa1089990:CDS
TACATGACTTGCCCTTATAC+AGG	0.473979	7_3:+3599118	Msa1089990:CDS
GGTGTTTATCACCTGTATAA+GGG	0.520757	7_3:-3599129	None:intergenic
TACCACAAACGAAGACAAGA+AGG	0.582604	7_3:-3597665	None:intergenic
GCAATGCAACAATTGCATGC+TGG	0.616125	7_3:-3599157	None:intergenic
TGTGTACTTTATGAAGCAGA+TGG	0.632102	7_3:+3599190	Msa1089990:CDS
AATATGGATATGGATATGGA+TGG	0.636950	7_3:+3599370	Msa1089990:three_prime_UTR
CTGAATCATAGCAAAACTGA+GGG	0.651830	7_3:-3599090	None:intergenic
ACAAACGAAGACAAGAAGGA+TGG	0.658438	7_3:-3597661	None:intergenic
ACTGAATCATAGCAAAACTG+AGG	0.661702	7_3:-3599091	None:intergenic
AACAATTGCATGCTGGATCG+AGG	0.699789	7_3:-3599150	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTTTTTTGTTGAATTGTAT+AGG	-	chr7_3:3598895-3598914	None:intergenic	15.0%
!!	GAATTAATTATGTTGTAATA+TGG	+	chr7_3:3599330-3599349	Msa1089990:three_prime_UTR	15.0%
!!!	ATTTTTTTGTTGAATTGTAT+AGG	-	chr7_3:3598895-3598914	None:intergenic	15.0%
!!	GAATTAATTATGTTGTAATA+TGG	+	chr7_3:3599330-3599349	Msa1089990:three_prime_UTR	15.0%
!!!	TTGTTTCTTTTAGCAATTTA+TGG	+	chr7_3:3597727-3597746	Msa1089990:intron	20.0%
!!!	TAAACAAACTGATTTATGTT+TGG	+	chr7_3:3598009-3598028	Msa1089990:intron	20.0%
!!	TAAACAAACTTTAACTAAAC+CGG	+	chr7_3:3598425-3598444	Msa1089990:intron	20.0%
!!	TATCCATATTACATACAAAT+AGG	-	chr7_3:3599360-3599379	None:intergenic	20.0%
!!	ATTTGTATGTAATATGGATA+TGG	+	chr7_3:3599360-3599379	Msa1089990:three_prime_UTR	20.0%
!!!	TTGTTTCTTTTAGCAATTTA+TGG	+	chr7_3:3597727-3597746	Msa1089990:intron	20.0%
!!!	TAAACAAACTGATTTATGTT+TGG	+	chr7_3:3598009-3598028	Msa1089990:intron	20.0%
!!	TAAACAAACTTTAACTAAAC+CGG	+	chr7_3:3598425-3598444	Msa1089990:intron	20.0%
!!	TATCCATATTACATACAAAT+AGG	-	chr7_3:3599360-3599379	None:intergenic	20.0%
!!	ATTTGTATGTAATATGGATA+TGG	+	chr7_3:3599360-3599379	Msa1089990:three_prime_UTR	20.0%
!!	TGAGAGAATTGATTTATGTT+TGG	+	chr7_3:3597965-3597984	Msa1089990:intron	25.0%
!	ACTAAAATAGACATAGCTAA+AGG	+	chr7_3:3598068-3598087	Msa1089990:intron	25.0%
!	TAAAGGAGAATTGATAAAGA+AGG	+	chr7_3:3598085-3598104	Msa1089990:intron	25.0%
!	TAAAGAAGGTGAATTGATAA+AGG	+	chr7_3:3598099-3598118	Msa1089990:intron	25.0%
!	AAAGAAGGTGAATTGATAAA+GGG	+	chr7_3:3598100-3598119	Msa1089990:intron	25.0%
!	GGGCAATAAAGAAAAATAAT+AGG	+	chr7_3:3598120-3598139	Msa1089990:intron	25.0%
!!!	TTTTTAAGAGGACTACAAAT+TGG	+	chr7_3:3598364-3598383	Msa1089990:intron	25.0%
!	CTTAATAATTAGACCTTGTA+AGG	-	chr7_3:3598478-3598497	None:intergenic	25.0%
!	AACTTCATACCTAATTAAGT+TGG	+	chr7_3:3598735-3598754	Msa1089990:intron	25.0%
!!!	TTATTTTTGTTGCAGTACAA+GGG	-	chr7_3:3598786-3598805	None:intergenic	25.0%
!!!	TTTATTTTTGTTGCAGTACA+AGG	-	chr7_3:3598787-3598806	None:intergenic	25.0%
!!	TGTACTGCTGATTAAAAATA+TGG	+	chr7_3:3599223-3599242	Msa1089990:exon	25.0%
!	ACTCCTATTTGTATGTAATA+TGG	+	chr7_3:3599354-3599373	Msa1089990:three_prime_UTR	25.0%
!	ATGTAATATGGATATGGATA+TGG	+	chr7_3:3599366-3599385	Msa1089990:three_prime_UTR	25.0%
!!	TGAGAGAATTGATTTATGTT+TGG	+	chr7_3:3597965-3597984	Msa1089990:intron	25.0%
!	ACTAAAATAGACATAGCTAA+AGG	+	chr7_3:3598068-3598087	Msa1089990:intron	25.0%
!	TAAAGGAGAATTGATAAAGA+AGG	+	chr7_3:3598085-3598104	Msa1089990:intron	25.0%
!	TAAAGAAGGTGAATTGATAA+AGG	+	chr7_3:3598099-3598118	Msa1089990:intron	25.0%
!	AAAGAAGGTGAATTGATAAA+GGG	+	chr7_3:3598100-3598119	Msa1089990:intron	25.0%
!	GGGCAATAAAGAAAAATAAT+AGG	+	chr7_3:3598120-3598139	Msa1089990:intron	25.0%
!!!	TTTTTAAGAGGACTACAAAT+TGG	+	chr7_3:3598364-3598383	Msa1089990:intron	25.0%
!	CTTAATAATTAGACCTTGTA+AGG	-	chr7_3:3598478-3598497	None:intergenic	25.0%
!	AACTTCATACCTAATTAAGT+TGG	+	chr7_3:3598735-3598754	Msa1089990:intron	25.0%
!!!	TTATTTTTGTTGCAGTACAA+GGG	-	chr7_3:3598786-3598805	None:intergenic	25.0%
!!!	TTTATTTTTGTTGCAGTACA+AGG	-	chr7_3:3598787-3598806	None:intergenic	25.0%
!!	TGTACTGCTGATTAAAAATA+TGG	+	chr7_3:3599223-3599242	Msa1089990:exon	25.0%
!	ACTCCTATTTGTATGTAATA+TGG	+	chr7_3:3599354-3599373	Msa1089990:three_prime_UTR	25.0%
!	ATGTAATATGGATATGGATA+TGG	+	chr7_3:3599366-3599385	Msa1089990:three_prime_UTR	25.0%
	CAATATGTAGAAAGAAAGAG+AGG	-	chr7_3:3597704-3597723	None:intergenic	30.0%
!!!	TTTTTGGCTAGAATTGCTTT+TGG	+	chr7_3:3598275-3598294	Msa1089990:intron	30.0%
!	ACCATACTTTATTTGAGATG+TGG	+	chr7_3:3598335-3598354	Msa1089990:intron	30.0%
	ACCACATCTCAAATAAAGTA+TGG	-	chr7_3:3598339-3598358	None:intergenic	30.0%
!!!	ATGTGGTGAACTTTTTTAAG+AGG	+	chr7_3:3598352-3598371	Msa1089990:intron	30.0%
	TATTTAGAAACTAAGTGCTC+CGG	-	chr7_3:3598447-3598466	None:intergenic	30.0%
	AAATAACAATCCTCCTTACA+AGG	+	chr7_3:3598462-3598481	Msa1089990:intron	30.0%
	AATAATTAGACCTTGTAAGG+AGG	-	chr7_3:3598475-3598494	None:intergenic	30.0%
!	AACTTAAACAACTTTTTGCG+TGG	+	chr7_3:3598542-3598561	Msa1089990:intron	30.0%
	CATAAACAGAAACTCAAGAT+AGG	+	chr7_3:3598702-3598721	Msa1089990:intron	30.0%
	CAATTGTGTCCAACTTAATT+AGG	-	chr7_3:3598747-3598766	None:intergenic	30.0%
!!	CTAATTAAGTTGGACACAAT+TGG	+	chr7_3:3598745-3598764	Msa1089990:intron	30.0%
!	AACTTTCTTGTTTATGATCC+AGG	+	chr7_3:3599016-3599035	Msa1089990:intron	30.0%
	AATATGGATATGGATATGGA+TGG	+	chr7_3:3599370-3599389	Msa1089990:three_prime_UTR	30.0%
	CAATATGTAGAAAGAAAGAG+AGG	-	chr7_3:3597704-3597723	None:intergenic	30.0%
!!!	TTTTTGGCTAGAATTGCTTT+TGG	+	chr7_3:3598275-3598294	Msa1089990:intron	30.0%
!	ACCATACTTTATTTGAGATG+TGG	+	chr7_3:3598335-3598354	Msa1089990:intron	30.0%
	ACCACATCTCAAATAAAGTA+TGG	-	chr7_3:3598339-3598358	None:intergenic	30.0%
!!!	ATGTGGTGAACTTTTTTAAG+AGG	+	chr7_3:3598352-3598371	Msa1089990:intron	30.0%
	TATTTAGAAACTAAGTGCTC+CGG	-	chr7_3:3598447-3598466	None:intergenic	30.0%
	AAATAACAATCCTCCTTACA+AGG	+	chr7_3:3598462-3598481	Msa1089990:intron	30.0%
	AATAATTAGACCTTGTAAGG+AGG	-	chr7_3:3598475-3598494	None:intergenic	30.0%
!	AACTTAAACAACTTTTTGCG+TGG	+	chr7_3:3598542-3598561	Msa1089990:intron	30.0%
	CATAAACAGAAACTCAAGAT+AGG	+	chr7_3:3598702-3598721	Msa1089990:intron	30.0%
	CAATTGTGTCCAACTTAATT+AGG	-	chr7_3:3598747-3598766	None:intergenic	30.0%
!!	CTAATTAAGTTGGACACAAT+TGG	+	chr7_3:3598745-3598764	Msa1089990:intron	30.0%
!	AACTTTCTTGTTTATGATCC+AGG	+	chr7_3:3599016-3599035	Msa1089990:intron	30.0%
	AATATGGATATGGATATGGA+TGG	+	chr7_3:3599370-3599389	Msa1089990:three_prime_UTR	30.0%
!	TTCTAGAAAAGCTAGAAGCT+AGG	+	chr7_3:3598182-3598201	Msa1089990:intron	35.0%
	CAAAAACAACGTGTTTGGTT+TGG	-	chr7_3:3598261-3598280	None:intergenic	35.0%
!!	CAAACCAAACACGTTGTTTT+TGG	+	chr7_3:3598259-3598278	Msa1089990:intron	35.0%
!	GCACTGTAGAGAATTGTTTT+TGG	+	chr7_3:3598297-3598316	Msa1089990:intron	35.0%
!!!	TGTAGAGAATTGTTTTTGGC+TGG	+	chr7_3:3598301-3598320	Msa1089990:intron	35.0%
!!!	GTAGAGAATTGTTTTTGGCT+GGG	+	chr7_3:3598302-3598321	Msa1089990:intron	35.0%
	GTTTCGTCTTCAGCTTAATT+AGG	-	chr7_3:3598873-3598892	None:intergenic	35.0%
	CTGAATCATAGCAAAACTGA+GGG	-	chr7_3:3599093-3599112	None:intergenic	35.0%
	ACTGAATCATAGCAAAACTG+AGG	-	chr7_3:3599094-3599113	None:intergenic	35.0%
	GGTGTTTATCACCTGTATAA+GGG	-	chr7_3:3599132-3599151	None:intergenic	35.0%
	AGGTGTTTATCACCTGTATA+AGG	-	chr7_3:3599133-3599152	None:intergenic	35.0%
	AATTGTTGCATTGCATCAAC+TGG	+	chr7_3:3599166-3599185	Msa1089990:CDS	35.0%
	TGTGTACTTTATGAAGCAGA+TGG	+	chr7_3:3599190-3599209	Msa1089990:CDS	35.0%
!	TTCTAGAAAAGCTAGAAGCT+AGG	+	chr7_3:3598182-3598201	Msa1089990:intron	35.0%
	CAAAAACAACGTGTTTGGTT+TGG	-	chr7_3:3598261-3598280	None:intergenic	35.0%
!!	CAAACCAAACACGTTGTTTT+TGG	+	chr7_3:3598259-3598278	Msa1089990:intron	35.0%
!	GCACTGTAGAGAATTGTTTT+TGG	+	chr7_3:3598297-3598316	Msa1089990:intron	35.0%
!!!	TGTAGAGAATTGTTTTTGGC+TGG	+	chr7_3:3598301-3598320	Msa1089990:intron	35.0%
!!!	GTAGAGAATTGTTTTTGGCT+GGG	+	chr7_3:3598302-3598321	Msa1089990:intron	35.0%
	GTTTCGTCTTCAGCTTAATT+AGG	-	chr7_3:3598873-3598892	None:intergenic	35.0%
	CTGAATCATAGCAAAACTGA+GGG	-	chr7_3:3599093-3599112	None:intergenic	35.0%
	ACTGAATCATAGCAAAACTG+AGG	-	chr7_3:3599094-3599113	None:intergenic	35.0%
	GGTGTTTATCACCTGTATAA+GGG	-	chr7_3:3599132-3599151	None:intergenic	35.0%
	AGGTGTTTATCACCTGTATA+AGG	-	chr7_3:3599133-3599152	None:intergenic	35.0%
	AATTGTTGCATTGCATCAAC+TGG	+	chr7_3:3599166-3599185	Msa1089990:CDS	35.0%
	TGTGTACTTTATGAAGCAGA+TGG	+	chr7_3:3599190-3599209	Msa1089990:CDS	35.0%
	ACAAACGAAGACAAGAAGGA+TGG	-	chr7_3:3597664-3597683	None:intergenic	40.0%
	ATCCTTCTTGTCTTCGTTTG+TGG	+	chr7_3:3597663-3597682	Msa1089990:CDS	40.0%
	TACCACAAACGAAGACAAGA+AGG	-	chr7_3:3597668-3597687	None:intergenic	40.0%
	CTCGAGTTTATGTGTGTGTT+TGG	+	chr7_3:3597873-3597892	Msa1089990:intron	40.0%
	AGCTAGGATTTGTAGCTTCA+TGG	+	chr7_3:3598198-3598217	Msa1089990:intron	40.0%
!	GCTTCATGGAGAATTGCTTT+TGG	+	chr7_3:3598212-3598231	Msa1089990:intron	40.0%
!!	TCATGGAGAATTGCTTTTGG+AGG	+	chr7_3:3598215-3598234	Msa1089990:intron	40.0%
	CTAGCCAAAAACAACGTGTT+TGG	-	chr7_3:3598266-3598285	None:intergenic	40.0%
!	GATCCAGGTGCAATTCTTTT+AGG	+	chr7_3:3599031-3599050	Msa1089990:intron	40.0%
!	TACATGACTTGCCCTTATAC+AGG	+	chr7_3:3599118-3599137	Msa1089990:CDS	40.0%
	ACAAACGAAGACAAGAAGGA+TGG	-	chr7_3:3597664-3597683	None:intergenic	40.0%
	ATCCTTCTTGTCTTCGTTTG+TGG	+	chr7_3:3597663-3597682	Msa1089990:CDS	40.0%
	TACCACAAACGAAGACAAGA+AGG	-	chr7_3:3597668-3597687	None:intergenic	40.0%
	CTCGAGTTTATGTGTGTGTT+TGG	+	chr7_3:3597873-3597892	Msa1089990:intron	40.0%
	AGCTAGGATTTGTAGCTTCA+TGG	+	chr7_3:3598198-3598217	Msa1089990:intron	40.0%
!	GCTTCATGGAGAATTGCTTT+TGG	+	chr7_3:3598212-3598231	Msa1089990:intron	40.0%
!!	TCATGGAGAATTGCTTTTGG+AGG	+	chr7_3:3598215-3598234	Msa1089990:intron	40.0%
	CTAGCCAAAAACAACGTGTT+TGG	-	chr7_3:3598266-3598285	None:intergenic	40.0%
!	GATCCAGGTGCAATTCTTTT+AGG	+	chr7_3:3599031-3599050	Msa1089990:intron	40.0%
!	TACATGACTTGCCCTTATAC+AGG	+	chr7_3:3599118-3599137	Msa1089990:CDS	40.0%
	CCTCCTAAAAGAATTGCACC+TGG	-	chr7_3:3599037-3599056	None:intergenic	45.0%
!	CCAGGTGCAATTCTTTTAGG+AGG	+	chr7_3:3599034-3599053	Msa1089990:intron	45.0%
	AACAATTGCATGCTGGATCG+AGG	-	chr7_3:3599153-3599172	None:intergenic	45.0%
	GCAATGCAACAATTGCATGC+TGG	-	chr7_3:3599160-3599179	None:intergenic	45.0%
	CCTCCTAAAAGAATTGCACC+TGG	-	chr7_3:3599037-3599056	None:intergenic	45.0%
!	CCAGGTGCAATTCTTTTAGG+AGG	+	chr7_3:3599034-3599053	Msa1089990:intron	45.0%
	AACAATTGCATGCTGGATCG+AGG	-	chr7_3:3599153-3599172	None:intergenic	45.0%
	GCAATGCAACAATTGCATGC+TGG	-	chr7_3:3599160-3599179	None:intergenic	45.0%
!!!	TATTTTTTTTTTTGAAAAAA+AGG	+	chr7_3:3598597-3598616	Msa1089990:intron	5.0%
!!!	ACTTATTTTTTTTTAAAAAA+AGG	+	chr7_3:3598649-3598668	Msa1089990:intron	5.0%
!!	AACAAAAATAAATAATAAAT+TGG	+	chr7_3:3598795-3598814	Msa1089990:intron	5.0%
!!!	TTCTAAAAATAAAAATAAAT+TGG	+	chr7_3:3598973-3598992	Msa1089990:intron	5.0%
!!	TAATATTATTTACATAATTA+TGG	+	chr7_3:3599303-3599322	Msa1089990:three_prime_UTR	5.0%
!!!	TATTTTTTTTTTTGAAAAAA+AGG	+	chr7_3:3598597-3598616	Msa1089990:intron	5.0%
!!!	ACTTATTTTTTTTTAAAAAA+AGG	+	chr7_3:3598649-3598668	Msa1089990:intron	5.0%
!!	AACAAAAATAAATAATAAAT+TGG	+	chr7_3:3598795-3598814	Msa1089990:intron	5.0%
!!!	TTCTAAAAATAAAAATAAAT+TGG	+	chr7_3:3598973-3598992	Msa1089990:intron	5.0%
!!	TAATATTATTTACATAATTA+TGG	+	chr7_3:3599303-3599322	Msa1089990:three_prime_UTR	5.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	3597642	3599470	3597642	ID=Msa1089990;Name=Msa1089990
chr7_3	mRNA	3597642	3599470	3597642	ID=Msa1089990-mRNA-1;Parent=Msa1089990;Name=Msa1089990-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|1\|0.5\|1\|1\|1\|2\|233\|80
chr7_3	exon	3597642	3597684	3597642	ID=Msa1089990-mRNA-1:exon:1426;Parent=Msa1089990-mRNA-1
chr7_3	exon	3599038	3599470	3599038	ID=Msa1089990-mRNA-1:exon:1427;Parent=Msa1089990-mRNA-1
chr7_3	CDS	3597642	3597684	3597642	ID=Msa1089990-mRNA-1:cds;Parent=Msa1089990-mRNA-1
chr7_3	CDS	3599038	3599237	3599038	ID=Msa1089990-mRNA-1:cds;Parent=Msa1089990-mRNA-1
chr7_3	three_prime_UTR	3599238	3599470	3599238	ID=Msa1089990-mRNA-1:three_prime_utr;Parent=Msa1089990-mRNA-1

Gene Sequence	>Msa1089990 ATGGCTTTAAAGGTTGGAACCATCCTTCTTGTCTTCGTTTGTGGTGCAATTCTTTTAGGAGGCAATTTGAAAACTGTTGATGCACAAAAAATTTGCCCTCAGTTTTGCTATGATTCAGTTGCATACATGACTTGCCCTTATACAGGTGATAAACACCTCGATCCAGCATGCAATTGTTGCATTGCATCAACTGGATGTGTACTTTATGAAGCAGATGGAACTCGTATTTGTACTGCTGATTAA
Protein sequence	>Msa1089990 MALKVGTILLVFVCGAILLGGNLKTVDAQKICPQFCYDSVAYMTCPYTGDKHLDPACNCCIASTGCVLYEADGTRICTAD*