AlfalfaGEDB | Msa0117650

M. sativa cultivar zhongmu-4 / Msa0117650

KEGG: K14431
GO: GO:0000003 GO:0002237 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071588 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0117650	XP_024630289.1	96.124	516	10	4	1	515	1	507	0.0	1010

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0117650	sp\|Q52MZ2\|TGA10_TOBAC	73.094	446	106	8	75	515	70	506	0.0	667

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0117650	A0A396JP80	96.124	516	10	4	1	515	1	507	0.0	1010

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TFs/TRs:

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Gene ID	Type	Classification
Msa0117650	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000800	Msa0117650	0.820576	6.376672e-53	-8.615850e-47
Msa0001510	Msa0117650	-0.830401	2.998443e-55	-8.615850e-47
Msa0002110	Msa0117650	-0.802888	4.530455e-49	-8.615850e-47
Msa0002690	Msa0117650	-0.841988	3.403050e-58	-8.615850e-47
Msa0002700	Msa0117650	-0.834594	2.738012e-56	-8.615850e-47
Msa0003340	Msa0117650	-0.802512	5.416296e-49	-8.615850e-47
Msa0004180	Msa0117650	-0.889746	1.837100e-73	-8.615850e-47
Msa0004940	Msa0117650	0.838928	2.148313e-57	-8.615850e-47
Msa0004990	Msa0117650	0.836613	8.443549e-57	-8.615850e-47
Msa0006480	Msa0117650	0.801284	9.682826e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0117650	MtrunA17_Chr1g0174701	96.124	516	10	4	1	515	1	507	0.0	1010
Msa0117650	MtrunA17_Chr7g0258321	74.944	443	91	6	73	515	42	464	0.0	672
Msa0117650	MtrunA17_Chr8g0353501	60.518	309	110	4	208	513	166	465	2.07e-129	384
Msa0117650	MtrunA17_Chr7g0256211	61.564	307	104	5	212	514	156	452	1.84e-127	379
Msa0117650	MtrunA17_Chr2g0321431	43.927	494	189	11	65	514	20	469	1.14e-125	376
Msa0117650	MtrunA17_Chr4g0026401	43.220	472	205	9	75	514	21	461	1.06e-115	350
Msa0117650	MtrunA17_Chr5g0422771	54.181	299	126	3	219	514	174	464	2.67e-111	338
Msa0117650	MtrunA17_Chr3g0124601	51.792	307	139	3	208	514	64	361	1.26e-103	315
Msa0117650	MtrunA17_Chr1g0210151	49.846	325	151	4	190	514	28	340	2.23e-102	311
Msa0117650	MtrunA17_Chr5g0424861	47.682	302	149	3	211	511	54	347	1.00e-85	268

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0117650	AT5G06839.3	63.348	442	140	10	91	515	23	459	0.0	544
Msa0117650	AT5G06839.1	60.592	439	116	8	90	515	22	416	0.0	518
Msa0117650	AT5G06839.2	60.455	440	116	9	90	515	22	417	1.31e-180	513
Msa0117650	AT1G08320.1	46.596	470	199	10	69	514	12	453	4.14e-129	385
Msa0117650	AT1G08320.4	46.596	470	199	10	69	514	12	453	4.14e-129	385
Msa0117650	AT1G08320.3	46.596	470	199	10	69	514	12	453	4.14e-129	385
Msa0117650	AT1G08320.2	58.462	325	113	5	191	514	26	329	8.55e-127	374
Msa0117650	AT1G08320.5	58.462	325	113	5	191	514	26	329	8.55e-127	374
Msa0117650	AT5G06950.2	56.410	312	124	4	205	514	29	330	1.15e-118	352
Msa0117650	AT5G06950.4	56.410	312	124	4	205	514	29	330	1.15e-118	352

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Find 95 sgRNAs with CRISPR-Local

Find 442 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCATCTCAACCGTCCA+TGG	0.517927	1_3:-39031470	Msa0117650:CDS
AAAACTCACAAGTAGTTGCT+AGG	0.556391	1_3:+39032736	None:intergenic
AAAATGTTAAGAGTTGGTGG+TGG	0.691086	1_3:+39031754	None:intergenic
AAATGAGCTTAGGTTATATG+TGG	0.558714	1_3:-39030225	Msa0117650:CDS
AACTCCATGGACGGTTGAGA+TGG	0.534438	1_3:+39031466	None:intergenic
AAGACTTGCTCAGAATAGAG+AGG	0.666657	1_3:-39031113	Msa0117650:CDS
AAGAGTGGAGAGCTTGTTCA+TGG	0.411247	1_3:+39028739	None:intergenic
AAGTCAAATTGAGCCTCTTA+CGG	0.480461	1_3:-39028930	Msa0117650:CDS
AATGGGAGGAGGTGCACTTT+TGG	0.318194	1_3:-39030495	Msa0117650:CDS
ACACTATTCTTGGCGAGGAC+GGG	0.506076	1_3:+39024947	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTAAAAAACTTGCATCTACT+TGG	+	chr1_3:39024994-39025013	None:intergenic	30.0%
GATTCAAGTGCTTATGATTT+AGG	-	chr1_3:39025457-39025476	Msa0117650:intron	30.0%
TGCTTATGATTTAGGTGAAT+TGG	-	chr1_3:39025465-39025484	Msa0117650:intron	30.0%
TTTGGTCAAATTCAGTAAGA+TGG	-	chr1_3:39025637-39025656	Msa0117650:intron	30.0%
TTGGTCAAATTCAGTAAGAT+GGG	-	chr1_3:39025638-39025657	Msa0117650:intron	30.0%
TTTAAAGATTCTCTGTCTGA+GGG	-	chr1_3:39025694-39025713	Msa0117650:intron	30.0%
TCATGACATATAACAAACCT+TGG	-	chr1_3:39025918-39025937	Msa0117650:intron	30.0%
ATTATGGGAAATGTAACACT+TGG	+	chr1_3:39026069-39026088	None:intergenic	30.0%
CCCATAATTAAGATAAGACT+TGG	-	chr1_3:39026081-39026100	Msa0117650:intron	30.0%
TATACCTTTGAATTAGATGG+TGG	+	chr1_3:39026250-39026269	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	39024950	39033022	39024950	ID=Msa0117650;Name=Msa0117650
chr1_3	mRNA	39024950	39033022	39024950	ID=Msa0117650-mRNA-1;Parent=Msa0117650;Name=Msa0117650-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0\|0\|1\|1\|1\|11\|0\|515
chr1_3	exon	39032745	39033022	39032745	ID=Msa0117650-mRNA-1:exon:12121;Parent=Msa0117650-mRNA-1
chr1_3	exon	39032416	39032522	39032416	ID=Msa0117650-mRNA-1:exon:12120;Parent=Msa0117650-mRNA-1
chr1_3	exon	39031708	39031802	39031708	ID=Msa0117650-mRNA-1:exon:12119;Parent=Msa0117650-mRNA-1
chr1_3	exon	39031411	39031533	39031411	ID=Msa0117650-mRNA-1:exon:12118;Parent=Msa0117650-mRNA-1
chr1_3	exon	39031222	39031290	39031222	ID=Msa0117650-mRNA-1:exon:12117;Parent=Msa0117650-mRNA-1
chr1_3	exon	39031084	39031143	39031084	ID=Msa0117650-mRNA-1:exon:12116;Parent=Msa0117650-mRNA-1
chr1_3	exon	39030881	39030958	39030881	ID=Msa0117650-mRNA-1:exon:12115;Parent=Msa0117650-mRNA-1
chr1_3	exon	39030450	39030525	39030450	ID=Msa0117650-mRNA-1:exon:12114;Parent=Msa0117650-mRNA-1
chr1_3	exon	39030073	39030344	39030073	ID=Msa0117650-mRNA-1:exon:12113;Parent=Msa0117650-mRNA-1
chr1_3	exon	39028721	39028960	39028721	ID=Msa0117650-mRNA-1:exon:12112;Parent=Msa0117650-mRNA-1
chr1_3	exon	39024950	39025099	39024950	ID=Msa0117650-mRNA-1:exon:12111;Parent=Msa0117650-mRNA-1
chr1_3	CDS	39032745	39033022	39032745	ID=Msa0117650-mRNA-1:cds;Parent=Msa0117650-mRNA-1
chr1_3	CDS	39032416	39032522	39032416	ID=Msa0117650-mRNA-1:cds;Parent=Msa0117650-mRNA-1
chr1_3	CDS	39031708	39031802	39031708	ID=Msa0117650-mRNA-1:cds;Parent=Msa0117650-mRNA-1
chr1_3	CDS	39031411	39031533	39031411	ID=Msa0117650-mRNA-1:cds;Parent=Msa0117650-mRNA-1
chr1_3	CDS	39031222	39031290	39031222	ID=Msa0117650-mRNA-1:cds;Parent=Msa0117650-mRNA-1
chr1_3	CDS	39031084	39031143	39031084	ID=Msa0117650-mRNA-1:cds;Parent=Msa0117650-mRNA-1
chr1_3	CDS	39030881	39030958	39030881	ID=Msa0117650-mRNA-1:cds;Parent=Msa0117650-mRNA-1
chr1_3	CDS	39030450	39030525	39030450	ID=Msa0117650-mRNA-1:cds;Parent=Msa0117650-mRNA-1
chr1_3	CDS	39030073	39030344	39030073	ID=Msa0117650-mRNA-1:cds;Parent=Msa0117650-mRNA-1
chr1_3	CDS	39028721	39028960	39028721	ID=Msa0117650-mRNA-1:cds;Parent=Msa0117650-mRNA-1
chr1_3	CDS	39024950	39025099	39024950	ID=Msa0117650-mRNA-1:cds;Parent=Msa0117650-mRNA-1

Gene Sequence

>Msa0117650

ATGGGGTTTTCTTTGGCTTTTGAAGAAGCTGAACAACAAGACCAAGTAGATGCAAGTTTTTTAGGTACCAATAATAACAATTCTATGCTCATGGCTTCCAAAAACTCACATGAATCTCAACATGAATCTCTTCAACAACAACAACAAAACCATCAAAATCTTCTTCATCATCACCAACAACAACAGAATCAACATCATCCTCATCATATGCATGACCATCAAATTTCTTTTGGAATGATGCCATCTTCATCTTCATCCTCTATGCCTAGCAACTACTTAAGCAAAGATTCAAGTGCTTATGATTTAGGTGAATTGGATCAAGCATTTTTTTTGTATCTGGATGGACAAGCACAAGCTGATCCCTCTAGTGTTCAAGATCAAAGACAGAACTCATCATCATCAGGAATGAAGCCACCACCAACTCTTAACATTTTCCCATCTCAACCAATGCATGTAGCACCACCACCATCTAATTCAAAGGTTAGCATGGGATTAACCTCTCCAATAACAAGTGGCTCCAAAAAACCATCTCAACCGTCCATGGAGTTGGCAAACCAACGAAATGAAAACCCTTCTGCACCTGCACCACTAAAACCTGTCAAGAAAGAGAATAATCGCAAGGCTACAACTTCAAGTTCTGAACATGAAGGACCAAAAACACCAGATCCTAAGACTCTGAGAAGACTTGCTCAGAATAGAGAGGCAGCAAGAAAAAGCAGGCTTAGGAAAAAGGCTTATGTTCAGCAGCTAGAAACAAGTAGGATTAAGCTTAATCAGCTTGAACAAGAGTTACAGCGTGCTAGAGCTCAAGGCGTGTTAATGGGAGGAGGTGCACTTTTGGGAGGAGACCAAGGAATTCCAATTTCTATGAATACCATTAGCTCAGAGGCTGCAATGTTTGATGTGGAGTATGGGAGGTGGTTAGAGGAGCATCACAGGCTAGTGTGTGAGCTAAGAGCAGCAGTAGATGAACACTTGCATGAAAATGAGCTTAGGTTATATGTGGAAAATTGTTTGGCTCACTATGATCAAGTAATTAACCTCAAAAATATTCTAGCTAGAACAGATGTGTTCCATCTTGTTTTTGGAATGTGGAAAACCCCAGCTGAACGTTGCTTCATGTGGATTGGTGGATTCAGACCATCTGAACTCATTAAGATAATTGTAAGTCAAATTGAGCCTCTTACGGAGCACCAAATACTTGGTATATGCGGGTTGCAACAATCAACACAAGAGGCAGAAGAGGCACTTTCCCAAGGGCTTGATGCACTCAACCAATCTCTTTCAGAGACTATAACATCAGACTCTTTAAGCAATCCTCCTAATATGGCTAACTACATGGGACAAATGGCTCTTGCCATGAACAAGCTCTCCACTCTTGAAAGTTTTGTGAGACAGGCAGATAATCTGAGGCACCAAACAGTTCATCGTCTGCATCAGTTGTTAACAGTTCGTCAAGCTGCAAGATGTTTGGTTGCAATGTCTGAGTATTTTCATCGTCTTCGAGCATTGAGTTCTCTCTGGTTGACCCGTCCTCGCCAAGAATAG

Protein sequence

>Msa0117650

MGFSLAFEEAEQQDQVDASFLGTNNNNSMLMASKNSHESQHESLQQQQQNHQNLLHHHQQQQNQHHPHHMHDHQISFGMMPSSSSSSMPSNYLSKDSSAYDLGELDQAFFLYLDGQAQADPSSVQDQRQNSSSSGMKPPPTLNIFPSQPMHVAPPPSNSKVSMGLTSPITSGSKKPSQPSMELANQRNENPSAPAPLKPVKKENNRKATTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQRARAQGVLMGGGALLGGDQGIPISMNTISSEAAMFDVEYGRWLEEHHRLVCELRAAVDEHLHENELRLYVENCLAHYDQVINLKNILARTDVFHLVFGMWKTPAERCFMWIGGFRPSELIKIIVSQIEPLTEHQILGICGLQQSTQEAEEALSQGLDALNQSLSETITSDSLSNPPNMANYMGQMALAMNKLSTLESFVRQADNLRHQTVHRLHQLLTVRQAARCLVAMSEYFHRLRALSSLWLTRPRQE*