Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0300570 | XP_039686739.1 | 83.918 | 684 | 69 | 7 | 2 | 667 | 1 | 661 | 0.0 | 1051 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0300570 | A0A072VCF9 | 83.918 | 684 | 69 | 7 | 2 | 667 | 1 | 661 | 0.0 | 1051 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0300570 | 0.826088 | 3.286493e-54 | -8.615850e-47 |
| Msa0107580 | Msa0300570 | 0.804498 | 2.099235e-49 | -8.615850e-47 |
| Msa0114060 | Msa0300570 | 0.800534 | 1.377624e-48 | -8.615850e-47 |
| Msa0142220 | Msa0300570 | 0.808027 | 3.789501e-50 | -8.615850e-47 |
| Msa0153910 | Msa0300570 | 0.818695 | 1.714328e-52 | -8.615850e-47 |
| Msa0157290 | Msa0300570 | 0.825910 | 3.622666e-54 | -8.615850e-47 |
| Msa0165220 | Msa0300570 | 0.801729 | 7.848657e-49 | -8.615850e-47 |
| Msa0188460 | Msa0300570 | 0.808351 | 3.232640e-50 | -8.615850e-47 |
| Msa0188830 | Msa0300570 | 0.813696 | 2.246534e-51 | -8.615850e-47 |
| Msa0200260 | Msa0300570 | 0.803368 | 3.605121e-49 | -8.615850e-47 |
| Msa0215320 | Msa0300570 | -0.807206 | 5.661766e-50 | -8.615850e-47 |
| Msa0220740 | Msa0300570 | 0.801943 | 7.094253e-49 | -8.615850e-47 |
| Msa0243100 | Msa0300570 | 0.804927 | 1.707990e-49 | -8.615850e-47 |
| Msa0291540 | Msa0300570 | 0.819260 | 1.275386e-52 | -8.615850e-47 |
| Msa0300570 | Msa0337900 | 0.851707 | 7.446513e-61 | -8.615850e-47 |
| Msa0300570 | Msa0345970 | 0.814362 | 1.601589e-51 | -8.615850e-47 |
| Msa0300570 | Msa0355220 | 0.807584 | 4.705764e-50 | -8.615850e-47 |
| Msa0300570 | Msa0380190 | 0.800840 | 1.193060e-48 | -8.615850e-47 |
| Msa0300570 | Msa0402290 | 0.801274 | 9.726532e-49 | -8.615850e-47 |
| Msa0300570 | Msa0406120 | 0.821396 | 4.129276e-53 | -8.615850e-47 |
| Msa0300570 | Msa0437990 | 0.834574 | 2.770416e-56 | -8.615850e-47 |
| Msa0300570 | Msa0440750 | 0.809589 | 1.755657e-50 | -8.615850e-47 |
| Msa0300570 | Msa0548280 | -0.802204 | 6.267351e-49 | -8.615850e-47 |
| Msa0300570 | Msa0600700 | 0.811849 | 5.699438e-51 | -8.615850e-47 |
| Msa0300570 | Msa0602390 | 0.809386 | 1.941720e-50 | -8.615850e-47 |
| Msa0300570 | Msa0695430 | 0.800598 | 1.337200e-48 | -8.615850e-47 |
| Msa0300570 | Msa0726140 | 0.806352 | 8.576316e-50 | -8.615850e-47 |
| Msa0300570 | Msa0767720 | 0.801589 | 8.385085e-49 | -8.615850e-47 |
| Msa0300570 | Msa0806090 | 0.807926 | 3.981575e-50 | -8.615850e-47 |
| Msa0300570 | Msa0822870 | 0.811818 | 5.788943e-51 | -8.615850e-47 |
| Msa0300570 | Msa0845400 | 0.801449 | 8.956488e-49 | -8.615850e-47 |
| Msa0300570 | Msa0848060 | 0.802664 | 5.040091e-49 | -8.615850e-47 |
| Msa0300570 | Msa0880140 | 0.821962 | 3.055172e-53 | -8.615850e-47 |
| Msa0300570 | Msa0885280 | 0.834167 | 3.505902e-56 | -8.615850e-47 |
| Msa0300570 | Msa0885290 | 0.816744 | 4.723144e-52 | -8.615850e-47 |
| Msa0300570 | Msa0925250 | 0.811774 | 5.917890e-51 | -8.615850e-47 |
| Msa0300570 | Msa0925290 | 0.818786 | 1.634745e-52 | -8.615850e-47 |
| Msa0300570 | Msa0935910 | 0.821592 | 3.720575e-53 | -8.615850e-47 |
| Msa0300570 | Msa0947660 | 0.804272 | 2.339380e-49 | -8.615850e-47 |
| Msa0300570 | Msa0954910 | 0.802845 | 4.624974e-49 | -8.615850e-47 |
| Msa0300570 | Msa1014540 | 0.843069 | 1.757657e-58 | -8.615850e-47 |
| Msa0300570 | Msa1021530 | 0.800791 | 1.221193e-48 | -8.615850e-47 |
| Msa0300570 | Msa1024240 | 0.803517 | 3.357303e-49 | -8.615850e-47 |
| Msa0300570 | Msa1054810 | 0.801159 | 1.026925e-48 | -8.615850e-47 |
| Msa0300570 | Msa1079180 | 0.829907 | 3.957302e-55 | -8.615850e-47 |
| Msa0300570 | Msa1109440 | 0.802350 | 5.849067e-49 | -8.615850e-47 |
| Msa0300570 | Msa1186060 | 0.812863 | 3.422976e-51 | -8.615850e-47 |
| Msa0300570 | Msa1261250 | 0.802934 | 4.432216e-49 | -8.615850e-47 |
| Msa0300570 | Msa1278110 | 0.831086 | 2.037160e-55 | -8.615850e-47 |
| Msa0300570 | Msa1283860 | 0.806196 | 9.251426e-50 | -8.615850e-47 |
| Msa0300570 | Msa1284680 | 0.817467 | 3.247772e-52 | -8.615850e-47 |
| Msa0300570 | Msa1322890 | 0.806248 | 9.021463e-50 | -8.615850e-47 |
| Msa0300570 | Msa1373030 | 0.804295 | 2.313591e-49 | -8.615850e-47 |
| Msa0300570 | Msa1392260 | 0.806272 | 8.916726e-50 | -8.615850e-47 |
| Msa0300570 | Msa1397860 | 0.800082 | 1.702468e-48 | -8.615850e-47 |
| Msa0300570 | Msa1411020 | 0.806110 | 9.643420e-50 | -8.615850e-47 |
| Msa0300570 | Msa1424290 | 0.808619 | 2.833698e-50 | -8.615850e-47 |
| Msa0300570 | Msa1429900 | 0.804889 | 1.739178e-49 | -8.615850e-47 |
| Msa0300570 | Msa1434350 | 0.805671 | 1.193063e-49 | -8.615850e-47 |
| Msa0300570 | Msa1439320 | 0.804622 | 1.977942e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0300570 | MtrunA17_Chr2g0325621 | 83.918 | 684 | 69 | 7 | 2 | 667 | 1 | 661 | 0.0 | 1051 |
| Msa0300570 | MtrunA17_Chr6g0471251 | 47.761 | 804 | 247 | 17 | 1 | 667 | 1 | 768 | 0.0 | 587 |
| Msa0300570 | MtrunA17_Chr2g0325351 | 50.802 | 748 | 226 | 18 | 1 | 666 | 1 | 688 | 0.0 | 561 |
| Msa0300570 | MtrunA17_Chr2g0325611 | 60.971 | 515 | 151 | 7 | 200 | 666 | 78 | 590 | 0.0 | 526 |
| Msa0300570 | MtrunA17_Chr2g0325661 | 61.432 | 433 | 135 | 5 | 263 | 667 | 449 | 877 | 3.62e-150 | 457 |
| Msa0300570 | MtrunA17_Chr2g0325661 | 38.136 | 472 | 149 | 14 | 2 | 380 | 1 | 422 | 2.28e-60 | 217 |
| Msa0300570 | MtrunA17_Chr2g0325811 | 39.365 | 851 | 308 | 15 | 2 | 665 | 1 | 830 | 6.68e-145 | 442 |
| Msa0300570 | MtrunA17_Chr2g0325701 | 47.924 | 578 | 229 | 9 | 24 | 564 | 47 | 589 | 3.03e-138 | 417 |
| Msa0300570 | MtrunA17_Chr2g0333341 | 47.549 | 612 | 189 | 12 | 37 | 609 | 103 | 621 | 1.02e-129 | 396 |
| Msa0300570 | MtrunA17_Chr2g0325711 | 37.625 | 800 | 320 | 14 | 27 | 651 | 26 | 821 | 2.45e-126 | 393 |
| Msa0300570 | MtrunA17_Chr2g0325361 | 47.425 | 563 | 225 | 9 | 170 | 666 | 520 | 1077 | 2.94e-122 | 389 |
| Msa0300570 | MtrunA17_Chr2g0325361 | 51.781 | 421 | 152 | 7 | 22 | 405 | 8 | 414 | 2.77e-101 | 333 |
| Msa0300570 | MtrunA17_Chr2g0325361 | 33.202 | 253 | 149 | 5 | 141 | 383 | 406 | 648 | 2.96e-18 | 89.7 |
| Msa0300570 | MtrunA17_Chr2g0325361 | 37.968 | 187 | 95 | 3 | 218 | 383 | 336 | 522 | 1.52e-16 | 84.0 |
| Msa0300570 | MtrunA17_Chr2g0325721 | 54.624 | 465 | 159 | 9 | 2 | 426 | 1 | 453 | 4.95e-122 | 372 |
| Msa0300570 | MtrunA17_Chr2g0280141 | 43.719 | 597 | 268 | 14 | 116 | 666 | 243 | 817 | 3.69e-117 | 369 |
| Msa0300570 | MtrunA17_Chr2g0280141 | 38.082 | 365 | 179 | 10 | 27 | 382 | 25 | 351 | 1.24e-39 | 156 |
| Msa0300570 | MtrunA17_Chr5g0416271 | 44.673 | 535 | 230 | 13 | 45 | 571 | 14 | 490 | 4.38e-117 | 359 |
| Msa0300570 | MtrunA17_Chr2g0325281 | 53.922 | 408 | 161 | 5 | 22 | 409 | 8 | 408 | 1.17e-112 | 352 |
| Msa0300570 | MtrunA17_Chr2g0325281 | 37.200 | 250 | 112 | 8 | 190 | 404 | 353 | 592 | 9.43e-18 | 87.4 |
| Msa0300570 | MtrunA17_Chr2g0325281 | 36.916 | 214 | 120 | 3 | 187 | 389 | 385 | 594 | 6.61e-17 | 84.7 |
| Msa0300570 | MtrunA17_Chr5g0434761 | 64.906 | 265 | 86 | 2 | 409 | 666 | 1 | 265 | 1.27e-108 | 329 |
| Msa0300570 | MtrunA17_Chr2g0325321 | 50.769 | 455 | 134 | 9 | 22 | 400 | 8 | 448 | 1.16e-107 | 343 |
| Msa0300570 | MtrunA17_Chr2g0325321 | 48.564 | 383 | 147 | 6 | 231 | 567 | 383 | 761 | 3.61e-73 | 251 |
| Msa0300570 | MtrunA17_Chr2g0325861 | 55.181 | 386 | 127 | 7 | 1 | 348 | 1 | 378 | 1.01e-105 | 340 |
| Msa0300570 | MtrunA17_Chr2g0325861 | 43.627 | 408 | 157 | 5 | 253 | 595 | 451 | 850 | 6.06e-79 | 268 |
| Msa0300570 | MtrunA17_Chr2g0325231 | 52.099 | 405 | 131 | 7 | 232 | 582 | 492 | 887 | 2.58e-105 | 340 |
| Msa0300570 | MtrunA17_Chr2g0325231 | 38.600 | 443 | 198 | 10 | 24 | 417 | 42 | 459 | 2.96e-53 | 197 |
| Msa0300570 | MtrunA17_Chr2g0325631 | 68.421 | 266 | 77 | 2 | 409 | 667 | 1 | 266 | 4.03e-101 | 310 |
| Msa0300570 | MtrunA17_Chr2g0325221 | 43.119 | 436 | 185 | 9 | 2 | 383 | 1 | 427 | 1.46e-77 | 261 |
| Msa0300570 | MtrunA17_Chr2g0325221 | 56.436 | 101 | 44 | 0 | 565 | 665 | 599 | 699 | 2.59e-25 | 111 |
| Msa0300570 | MtrunA17_Chr2g0325221 | 31.868 | 273 | 156 | 4 | 150 | 394 | 318 | 588 | 6.78e-17 | 84.7 |
| Msa0300570 | MtrunA17_Chr2g0325221 | 27.554 | 323 | 213 | 4 | 97 | 400 | 246 | 566 | 8.05e-15 | 78.2 |
| Msa0300570 | MtrunA17_Chr2g0325691 | 39.675 | 431 | 205 | 9 | 6 | 383 | 6 | 434 | 2.90e-59 | 212 |
| Msa0300570 | MtrunA17_Chr2g0325691 | 40.065 | 307 | 151 | 10 | 126 | 409 | 433 | 729 | 3.29e-29 | 123 |
| Msa0300570 | MtrunA17_Chr2g0325691 | 35.102 | 245 | 112 | 10 | 170 | 383 | 334 | 562 | 9.28e-12 | 68.6 |
| Msa0300570 | MtrunA17_Chr7g0235901 | 43.963 | 323 | 155 | 7 | 71 | 379 | 1 | 311 | 7.88e-58 | 197 |
| Msa0300570 | MtrunA17_Chr2g0325291 | 60.112 | 178 | 71 | 0 | 445 | 622 | 29 | 206 | 1.03e-57 | 194 |
| Msa0300570 | MtrunA17_Chr2g0332961 | 46.707 | 334 | 136 | 9 | 218 | 537 | 48 | 353 | 2.14e-56 | 195 |
| Msa0300570 | MtrunA17_Chr2g0332961 | 31.321 | 265 | 126 | 9 | 60 | 310 | 11 | 233 | 1.98e-12 | 69.3 |
| Msa0300570 | MtrunA17_Chr2g0325741 | 41.562 | 320 | 129 | 9 | 1 | 278 | 1 | 304 | 3.87e-54 | 187 |
| Msa0300570 | MtrunA17_Chr2g0325651 | 38.173 | 427 | 183 | 13 | 6 | 409 | 19 | 387 | 4.53e-52 | 184 |
| Msa0300570 | MtrunA17_Chr2g0325781 | 38.643 | 339 | 141 | 9 | 2 | 311 | 1 | 301 | 1.46e-51 | 181 |
| Msa0300570 | MtrunA17_Chr5g0434741 | 36.761 | 389 | 144 | 12 | 2 | 383 | 1 | 294 | 1.92e-46 | 166 |
| Msa0300570 | MtrunA17_Chr2g0332951 | 43.243 | 259 | 90 | 6 | 310 | 564 | 2 | 207 | 1.22e-45 | 161 |
| Msa0300570 | MtrunA17_Chr2g0325261 | 38.243 | 387 | 138 | 14 | 1 | 381 | 1 | 292 | 2.43e-45 | 164 |
| Msa0300570 | MtrunA17_Chr2g0325341 | 38.243 | 387 | 138 | 14 | 1 | 381 | 1 | 292 | 2.43e-45 | 164 |
| Msa0300570 | MtrunA17_Chr2g0325771 | 62.722 | 169 | 47 | 3 | 404 | 564 | 12 | 172 | 3.67e-45 | 159 |
| Msa0300570 | MtrunA17_Chr2g0325331 | 59.236 | 157 | 58 | 1 | 409 | 559 | 1 | 157 | 1.13e-44 | 157 |
| Msa0300570 | MtrunA17_Chr8g0361651 | 33.634 | 443 | 211 | 12 | 232 | 662 | 32 | 403 | 9.30e-44 | 164 |
| Msa0300570 | MtrunA17_Chr2g0325201 | 47.826 | 230 | 105 | 2 | 146 | 364 | 2 | 227 | 2.28e-43 | 155 |
| Msa0300570 | MtrunA17_Chr2g0325761 | 35.654 | 474 | 201 | 13 | 2 | 383 | 1 | 462 | 4.05e-43 | 165 |
| Msa0300570 | MtrunA17_Chr2g0325761 | 56.566 | 99 | 43 | 0 | 564 | 662 | 591 | 689 | 6.55e-25 | 110 |
| Msa0300570 | MtrunA17_Chr2g0325761 | 38.000 | 200 | 100 | 3 | 218 | 393 | 392 | 591 | 7.92e-22 | 100 |
| Msa0300570 | MtrunA17_Chr3g0140591 | 54.167 | 168 | 70 | 2 | 406 | 567 | 6 | 172 | 2.84e-41 | 148 |
| Msa0300570 | MtrunA17_Chr2g0325311 | 65.546 | 119 | 38 | 3 | 551 | 666 | 1 | 119 | 1.08e-39 | 141 |
| Msa0300570 | MtrunA17_Chr4g0024061 | 40.784 | 255 | 110 | 8 | 416 | 662 | 428 | 649 | 2.45e-34 | 139 |
| Msa0300570 | MtrunA17_Chr2g0325271 | 61.538 | 104 | 39 | 1 | 564 | 666 | 40 | 143 | 1.46e-33 | 125 |
| Msa0300570 | MtrunA17_Chr2g0325241 | 34.528 | 307 | 158 | 7 | 216 | 487 | 124 | 422 | 6.15e-32 | 129 |
| Msa0300570 | MtrunA17_Chr7g0235921 | 70.408 | 98 | 28 | 1 | 481 | 578 | 1 | 97 | 4.18e-26 | 103 |
| Msa0300570 | MtrunA17_Chr2g0325751 | 46.753 | 154 | 60 | 4 | 288 | 419 | 2 | 155 | 9.58e-26 | 103 |
| Msa0300570 | MtrunA17_Chr2g0325641 | 35.206 | 267 | 108 | 6 | 190 | 404 | 58 | 311 | 5.98e-24 | 103 |
| Msa0300570 | MtrunA17_Chr2g0325641 | 41.353 | 133 | 60 | 2 | 265 | 383 | 1 | 129 | 2.88e-13 | 71.6 |
| Msa0300570 | MtrunA17_Chr2g0325641 | 36.559 | 186 | 70 | 6 | 244 | 383 | 23 | 206 | 4.67e-11 | 64.7 |
| Msa0300570 | MtrunA17_Chr4g0044221 | 33.866 | 313 | 155 | 11 | 212 | 502 | 12 | 294 | 3.32e-23 | 100 |
| Msa0300570 | MtrunA17_Chr4g0044221 | 37.563 | 197 | 104 | 4 | 123 | 317 | 14 | 193 | 8.49e-19 | 88.2 |
| Msa0300570 | MtrunA17_Chr3g0140581 | 39.744 | 156 | 93 | 1 | 100 | 255 | 1 | 155 | 3.67e-21 | 90.5 |
| Msa0300570 | MtrunA17_Chr2g0325801 | 37.342 | 158 | 66 | 3 | 1 | 158 | 1 | 125 | 5.39e-19 | 83.6 |
| Msa0300570 | MtrunA17_Chr2g0325791 | 41.401 | 157 | 63 | 4 | 190 | 339 | 22 | 156 | 2.64e-17 | 83.6 |
| Msa0300570 | MtrunA17_Chr2g0325791 | 39.189 | 148 | 62 | 4 | 232 | 369 | 25 | 154 | 1.28e-11 | 66.6 |
| Msa0300570 | MtrunA17_Chr5g0434751 | 34.000 | 300 | 138 | 11 | 140 | 404 | 2 | 276 | 5.24e-17 | 82.4 |
| Msa0300570 | MtrunA17_Chr4g0053711 | 25.676 | 444 | 262 | 17 | 269 | 662 | 13 | 438 | 9.40e-17 | 84.0 |
| Msa0300570 | MtrunA17_Chr3g0101121 | 29.319 | 191 | 130 | 2 | 474 | 663 | 172 | 358 | 1.77e-13 | 73.6 |
| Msa0300570 | MtrunA17_Chr5g0445281 | 27.128 | 188 | 132 | 2 | 475 | 661 | 198 | 381 | 2.48e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0300570 | AT1G31814.1 | 26.984 | 189 | 131 | 4 | 466 | 650 | 153 | 338 | 1.16e-13 | 74.3 |
| Msa0300570 | AT5G48385.1 | 27.097 | 155 | 113 | 0 | 512 | 666 | 302 | 456 | 9.11e-13 | 71.6 |
| Msa0300570 | AT5G16320.1 | 25.664 | 226 | 158 | 5 | 445 | 666 | 142 | 361 | 4.25e-11 | 66.2 |
Find 100 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAAATCAGTTTGGCATTT+TGG | 0.038762 | 2_3:+55995711 | None:intergenic |
| CTCTTCAGTATCTCTCTTTA+TGG | 0.145269 | 2_3:+55998739 | None:intergenic |
| AACTGTTCAACAATGCATTT+TGG | 0.163705 | 2_3:-55995522 | Msa0300570:CDS |
| CTTCTTACACAGTGGATTAA+TGG | 0.178750 | 2_3:+55997097 | None:intergenic |
| TTTCGATGAAGATGAAATTT+TGG | 0.207548 | 2_3:-55996868 | Msa0300570:CDS |
| GATACAATGAACAAATTAAT+TGG | 0.217654 | 2_3:-55998407 | Msa0300570:CDS |
| TGATTCAAAGCTGAATAAAT+TGG | 0.240384 | 2_3:-55998018 | Msa0300570:CDS |
| GAAGATTCTTTGGCAGTTCT+TGG | 0.256037 | 2_3:-55996930 | Msa0300570:CDS |
| AGAGAATAGTGAAGATTCTT+TGG | 0.258575 | 2_3:-55996940 | Msa0300570:CDS |
| AGATCAAGAAATTGCTAGTT+TGG | 0.267521 | 2_3:-55995546 | Msa0300570:CDS |
| CTTACACAATCTTCAATATT+CGG | 0.299585 | 2_3:+55997008 | None:intergenic |
| ATATGCAGTTGCATCTTTCA+TGG | 0.315210 | 2_3:-55997255 | Msa0300570:intron |
| TTCTTACACAGTGGATTAAT+GGG | 0.334842 | 2_3:+55997098 | None:intergenic |
| AATCCTTTATTCGTCCTTCC+AGG | 0.335813 | 2_3:+55998264 | None:intergenic |
| TGTATCAAGCTCTATCTCTT+TGG | 0.338319 | 2_3:+55998424 | None:intergenic |
| GTTCCTCTTCCTTCCTTTCA+CGG | 0.342021 | 2_3:+55998495 | None:intergenic |
| GAACCTGGAAGGACGAATAA+AGG | 0.361370 | 2_3:-55998267 | Msa0300570:CDS |
| CGATTAAGTCATACCATTGA+TGG | 0.364830 | 2_3:-55997227 | Msa0300570:CDS |
| TTGAAAGATCATCTTCATCT+TGG | 0.365115 | 2_3:+55998879 | None:intergenic |
| AATTTATTCAGCTTTGAATC+AGG | 0.368146 | 2_3:+55998020 | None:intergenic |
| TGAATGTACTTTGGAACTTA+AGG | 0.374070 | 2_3:-55998447 | Msa0300570:CDS |
| AGAAACATGCAAGGAGGAAT+CGG | 0.392956 | 2_3:+55998940 | None:intergenic |
| TTAAGTTTGGGAACATTTAG+TGG | 0.403322 | 2_3:-55999019 | Msa0300570:CDS |
| GGAAGAGCAGCTCTATTTGA+TGG | 0.412227 | 2_3:-55998600 | Msa0300570:CDS |
| TATGGAGATGTTTCAGACTC+TGG | 0.412809 | 2_3:-55996811 | Msa0300570:CDS |
| TCTTGGGCATGATGATGATA+TGG | 0.414920 | 2_3:+55998896 | None:intergenic |
| GAGGTTCTTACAAAGGAGAT+TGG | 0.415846 | 2_3:-55995482 | Msa0300570:CDS |
| TATTTGATGGAAAACATGAT+TGG | 0.423802 | 2_3:-55998587 | Msa0300570:CDS |
| CAGCTTTGAATCAGGATCCT+TGG | 0.431352 | 2_3:+55998028 | None:intergenic |
| ACTAGCAATTTCTTGATCTC+TGG | 0.437247 | 2_3:+55995550 | None:intergenic |
| GAAACATGCAAGGAGGAATC+GGG | 0.437891 | 2_3:+55998941 | None:intergenic |
| AACCAACTCCGTTGAAATCA+AGG | 0.446102 | 2_3:-55995672 | Msa0300570:intron |
| TGAAAGATCATCTTCATCTT+GGG | 0.448972 | 2_3:+55998880 | None:intergenic |
| ACTGTTCACACAAATCAGTT+TGG | 0.453371 | 2_3:+55995703 | None:intergenic |
| CTTGAGCTACAAGCACATAA+AGG | 0.454488 | 2_3:-55995449 | Msa0300570:CDS |
| AACCTTGATTTCAACGGAGT+TGG | 0.457408 | 2_3:+55995670 | None:intergenic |
| GAAGGAGTTTCAATTAAAAG+AGG | 0.459023 | 2_3:-55998207 | Msa0300570:CDS |
| ATTGACGGGGAGCAAGAATC+TGG | 0.459629 | 2_3:-55997936 | Msa0300570:intron |
| CTGCAAACTTGTTCCATCAA+TGG | 0.465792 | 2_3:+55997214 | None:intergenic |
| CATTAAGAAAATATATTGAC+GGG | 0.467837 | 2_3:-55997950 | Msa0300570:CDS |
| ATGGAGATGTTTCAGACTCT+GGG | 0.479493 | 2_3:-55996810 | Msa0300570:CDS |
| GATTGTTTACCTGTCAACTT+AGG | 0.480874 | 2_3:+55997978 | None:intergenic |
| AATTATTTGAGGAATGCAAA+TGG | 0.488538 | 2_3:-55998793 | Msa0300570:CDS |
| TCGTGCTGAAATGAAGGAAT+TGG | 0.489606 | 2_3:-55998345 | Msa0300570:CDS |
| ATTCAGTTGTACATATAACT+TGG | 0.492664 | 2_3:-55995774 | Msa0300570:CDS |
| TAAATTGGATGGACAAATGA+AGG | 0.494056 | 2_3:-55998003 | Msa0300570:CDS |
| CATTAATCCACTGTGTAAGA+AGG | 0.495309 | 2_3:-55997096 | Msa0300570:CDS |
| TTAAAAGAGGAGGAATTTGA+AGG | 0.496577 | 2_3:-55998194 | Msa0300570:CDS |
| TGATGGAACAAGTTTGCAGT+TGG | 0.496915 | 2_3:-55997210 | Msa0300570:CDS |
| TCAATGAAGAATCAACTTGA+GGG | 0.497417 | 2_3:-55998320 | Msa0300570:CDS |
| GCAATTCGAGGGACAAATGA+AGG | 0.498239 | 2_3:-55998225 | Msa0300570:CDS |
| AGTCATTGATAACATTGATA+AGG | 0.503822 | 2_3:-55998519 | Msa0300570:CDS |
| TGAAGAACGTCCGAAGGAAA+AGG | 0.507190 | 2_3:-55998093 | Msa0300570:CDS |
| ATAATTCTTCTAACAGCGTA+AGG | 0.510690 | 2_3:+55998810 | None:intergenic |
| TATCAAGGAGTTTGTAGTGA+AGG | 0.513397 | 2_3:-55998621 | Msa0300570:CDS |
| GGAATTTGAAGGCAGAGTGA+AGG | 0.514651 | 2_3:-55998183 | Msa0300570:CDS |
| TCATCATGACCACAAAACTT+TGG | 0.518656 | 2_3:+55999100 | None:intergenic |
| TGAGTCAGAGAAGAAGAACC+TGG | 0.519773 | 2_3:-55998282 | Msa0300570:CDS |
| TTCTGTTAAGATTAAGAAGA+GGG | 0.522097 | 2_3:-55998981 | Msa0300570:CDS |
| ATGAAGGAGCCTAAGTTGAC+AGG | 0.531788 | 2_3:-55997987 | Msa0300570:CDS |
| GGAGTTTCAATTAAAAGAGG+AGG | 0.531791 | 2_3:-55998204 | Msa0300570:CDS |
| GAATGGTCGTGCTGAAATGA+AGG | 0.534624 | 2_3:-55998351 | Msa0300570:CDS |
| ATCAATGAAGAATCAACTTG+AGG | 0.537452 | 2_3:-55998321 | Msa0300570:CDS |
| TCAAAGCTGAATAAATTGGA+TGG | 0.541007 | 2_3:-55998014 | Msa0300570:CDS |
| GCAGTTTGAAAGACAAGCCA+AGG | 0.542581 | 2_3:-55998045 | Msa0300570:CDS |
| GGAGCTCGAATCAAAGAAGA+AGG | 0.548520 | 2_3:-55998120 | Msa0300570:CDS |
| GCTGTTAGAAGAATTATTTG+AGG | 0.549884 | 2_3:-55998804 | Msa0300570:CDS |
| TTAGAGTCTGAAAAGGAGAA+TGG | 0.552697 | 2_3:-55998368 | Msa0300570:CDS |
| GGAAATGAAATCAAAGGTGG+AGG | 0.559109 | 2_3:-55998162 | Msa0300570:CDS |
| GCATTAAGAAAATATATTGA+CGG | 0.559853 | 2_3:-55997951 | Msa0300570:CDS |
| AGGAAAAGGTGAATGAGCTC+AGG | 0.560081 | 2_3:-55998079 | Msa0300570:CDS |
| TGCTCAGCACAAGATAGCTA+TGG | 0.565711 | 2_3:-55996829 | Msa0300570:CDS |
| GGATTGCAAACTACAGTCTG+AGG | 0.567148 | 2_3:-55995501 | Msa0300570:CDS |
| GGAACTCGAAGATCAAGTTA+AGG | 0.570629 | 2_3:-55998141 | Msa0300570:CDS |
| TGAGGAAAACTTTGTGACAA+TGG | 0.572677 | 2_3:+55999046 | None:intergenic |
| TGATAAGGACCGTGAAAGGA+AGG | 0.575886 | 2_3:-55998504 | Msa0300570:CDS |
| GAAGGAAATGAAATCAAAGG+TGG | 0.578454 | 2_3:-55998165 | Msa0300570:CDS |
| AGAGCGCAAGCTAGAGCTCA+AGG | 0.583452 | 2_3:-55998564 | Msa0300570:CDS |
| CAGAAGAACCTTGATTTCAA+CGG | 0.584171 | 2_3:+55995664 | None:intergenic |
| ATCAAGAGAGAAGCAATTCG+AGG | 0.585327 | 2_3:-55998237 | Msa0300570:CDS |
| TGAAGTTTGTGACAAAGTGC+AGG | 0.585398 | 2_3:-55998660 | Msa0300570:CDS |
| GGACCGTGAAAGGAAGGAAG+AGG | 0.585661 | 2_3:-55998498 | Msa0300570:CDS |
| GTTCCCAAACTTAAAATCTG+AGG | 0.588610 | 2_3:+55999028 | None:intergenic |
| ATTAATCCACTGTGTAAGAA+GGG | 0.589689 | 2_3:-55997095 | Msa0300570:CDS |
| TTTCTTAACAGAAACATGCA+AGG | 0.602293 | 2_3:+55998931 | None:intergenic |
| TTGTTGAGAATCTTATCAAG+AGG | 0.606243 | 2_3:-55995820 | Msa0300570:CDS |
| ACATTGATAAGGACCGTGAA+AGG | 0.607617 | 2_3:-55998508 | Msa0300570:CDS |
| TCAAGAGAGAAGCAATTCGA+GGG | 0.616023 | 2_3:-55998236 | Msa0300570:CDS |
| GGAATTTGAAGAACGTCCGA+AGG | 0.617782 | 2_3:-55998099 | Msa0300570:CDS |
| AGTGAAGGAAATGAAATCAA+AGG | 0.623538 | 2_3:-55998168 | Msa0300570:CDS |
| TCAGAGAAGAAGAACCTGGA+AGG | 0.625144 | 2_3:-55998278 | Msa0300570:CDS |
| CTTCTGTTAAGATTAAGAAG+AGG | 0.632509 | 2_3:-55998982 | Msa0300570:CDS |
| TTGTCTCCCTTCTTACACAG+TGG | 0.649739 | 2_3:+55997089 | None:intergenic |
| CGTAAGGTCTTTCTTCAGTG+AGG | 0.654872 | 2_3:+55998826 | None:intergenic |
| ACAGTCTGAGGTTCTTACAA+AGG | 0.655255 | 2_3:-55995489 | Msa0300570:CDS |
| ACTGTTGCAGTTGAGTCACA+TGG | 0.677260 | 2_3:-55997173 | Msa0300570:CDS |
| CTTAACAGAAACATGCAAGG+AGG | 0.699023 | 2_3:+55998934 | None:intergenic |
| AAACATGCAAGGAGGAATCG+GGG | 0.701101 | 2_3:+55998942 | None:intergenic |
| GTTGTTCTAGTAGAAAGATG+CGG | 0.701348 | 2_3:+55997045 | None:intergenic |
| ATTAAGAAAATATATTGACG+GGG | 0.735655 | 2_3:-55997949 | Msa0300570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGGCTTAATTATAATATTA+TGG | - | chr2_3:55996925-55996944 | Msa0300570:CDS | 15.0% |
| !! | TATCAAAACATAAAGATAAA+AGG | + | chr2_3:55997844-55997863 | None:intergenic | 15.0% |
| !! | GATACAATGAACAAATTAAT+TGG | - | chr2_3:55996162-55996181 | Msa0300570:intron | 20.0% |
| !! | GCATTAAGAAAATATATTGA+CGG | - | chr2_3:55996618-55996637 | Msa0300570:intron | 20.0% |
| !! | CATTAAGAAAATATATTGAC+GGG | - | chr2_3:55996619-55996638 | Msa0300570:intron | 20.0% |
| !! | ATTAAGAAAATATATTGACG+GGG | - | chr2_3:55996620-55996639 | Msa0300570:intron | 20.0% |
| !!! | TTTTTCAAGTATATTGCAAA+TGG | - | chr2_3:55996987-55997006 | Msa0300570:CDS | 20.0% |
| !!! | GATTTCATTGATTAATAAAC+AGG | + | chr2_3:55997080-55997099 | None:intergenic | 20.0% |
| !!! | TTTACCCATTTTATCATTTA+TGG | - | chr2_3:55998007-55998026 | Msa0300570:CDS | 20.0% |
| !!! | TACTATTTTGAAAGAAACAT+GGG | + | chr2_3:55998135-55998154 | None:intergenic | 20.0% |
| !!! | TTACTATTTTGAAAGAAACA+TGG | + | chr2_3:55998136-55998155 | None:intergenic | 20.0% |
| !!! | TGTTTTGATATGAATAAATG+TGG | + | chr2_3:55998199-55998218 | None:intergenic | 20.0% |
| !!! | ATGAATCCTTTTAAGAAAAT+AGG | - | chr2_3:55998378-55998397 | Msa0300570:CDS | 20.0% |
| !!! | AGTTATCCTATTTTCTTAAA+AGG | + | chr2_3:55998387-55998406 | None:intergenic | 20.0% |
| !! | AAGATTATGATATTAGTTGT+TGG | - | chr2_3:55998447-55998466 | Msa0300570:CDS | 20.0% |
| !! | AAATTGAACTGATATCTAAT+TGG | - | chr2_3:55998474-55998493 | Msa0300570:CDS | 20.0% |
| !!! | TGTCTCTTCTATTTTTTAAA+TGG | - | chr2_3:55998626-55998645 | Msa0300570:CDS | 20.0% |
| !!! | AGATTTTTGTTGTTGTTAAT+TGG | - | chr2_3:55998685-55998704 | Msa0300570:CDS | 20.0% |
| !!! | TTTTCCTCAGATTTTAAGTT+TGG | - | chr2_3:55995537-55995556 | Msa0300570:CDS | 25.0% |
| !!! | TTTCCTCAGATTTTAAGTTT+GGG | - | chr2_3:55995538-55995557 | Msa0300570:CDS | 25.0% |
| ! | TTCTGTTAAGATTAAGAAGA+GGG | - | chr2_3:55995588-55995607 | Msa0300570:intron | 25.0% |
| ! | AATTATTTGAGGAATGCAAA+TGG | - | chr2_3:55995776-55995795 | Msa0300570:CDS | 25.0% |
| ! | AAAAACTGAAGAATGTATCA+AGG | - | chr2_3:55995933-55995952 | Msa0300570:intron | 25.0% |
| ! | TATTTGATGGAAAACATGAT+TGG | - | chr2_3:55995982-55996001 | Msa0300570:intron | 25.0% |
| !! | AGTCATTGATAACATTGATA+AGG | - | chr2_3:55996050-55996069 | Msa0300570:intron | 25.0% |
| ! | AAAAATCGATGAATGTACTT+TGG | - | chr2_3:55996113-55996132 | Msa0300570:intron | 25.0% |
| ! | AGAAAAATTAGAGTCTGAAA+AGG | - | chr2_3:55996194-55996213 | Msa0300570:intron | 25.0% |
| !!! | AATTTATTCAGCTTTGAATC+AGG | + | chr2_3:55996552-55996571 | None:intergenic | 25.0% |
| ! | TGATTCAAAGCTGAATAAAT+TGG | - | chr2_3:55996551-55996570 | Msa0300570:intron | 25.0% |
| ! | GAGATTCATAAAATGTTCAA+GGG | + | chr2_3:55996866-55996885 | None:intergenic | 25.0% |
| ! | AGAGATTCATAAAATGTTCA+AGG | + | chr2_3:55996867-55996886 | None:intergenic | 25.0% |
| ! | TCTCCTAGATTGAAATATAT+GGG | + | chr2_3:55997179-55997198 | None:intergenic | 25.0% |
| ! | ATCTCCTAGATTGAAATATA+TGG | + | chr2_3:55997180-55997199 | None:intergenic | 25.0% |
| ! | CTTACACAATCTTCAATATT+CGG | + | chr2_3:55997564-55997583 | None:intergenic | 25.0% |
| !! | TTTCGATGAAGATGAAATTT+TGG | - | chr2_3:55997701-55997720 | Msa0300570:intron | 25.0% |
| ! | TCCACCATAAATGATAAAAT+GGG | + | chr2_3:55998014-55998033 | None:intergenic | 25.0% |
| ! | ATCCACCATAAATGATAAAA+TGG | + | chr2_3:55998015-55998034 | None:intergenic | 25.0% |
| !!! | AAATGCCATTTTTCAATTTG+TGG | - | chr2_3:55998320-55998339 | Msa0300570:CDS | 25.0% |
| ! | TAAGAAAATAGGATAACTCT+TGG | - | chr2_3:55998389-55998408 | Msa0300570:CDS | 25.0% |
| ! | ATTCAGTTGTACATATAACT+TGG | - | chr2_3:55998795-55998814 | Msa0300570:CDS | 25.0% |
| ! | ATTACTATGTATTTGAACTC+AGG | - | chr2_3:55998990-55999009 | Msa0300570:CDS | 25.0% |
| TTAAGTTTGGGAACATTTAG+TGG | - | chr2_3:55995550-55995569 | Msa0300570:CDS | 30.0% | |
| CTTCTGTTAAGATTAAGAAG+AGG | - | chr2_3:55995587-55995606 | Msa0300570:intron | 30.0% | |
| TTTCTTAACAGAAACATGCA+AGG | + | chr2_3:55995641-55995660 | None:intergenic | 30.0% | |
| TGAAAGATCATCTTCATCTT+GGG | + | chr2_3:55995692-55995711 | None:intergenic | 30.0% | |
| TTGAAAGATCATCTTCATCT+TGG | + | chr2_3:55995693-55995712 | None:intergenic | 30.0% | |
| ATAATTCTTCTAACAGCGTA+AGG | + | chr2_3:55995762-55995781 | None:intergenic | 30.0% | |
| GCTGTTAGAAGAATTATTTG+AGG | - | chr2_3:55995765-55995784 | Msa0300570:CDS | 30.0% | |
| !! | TGAATGTACTTTGGAACTTA+AGG | - | chr2_3:55996122-55996141 | Msa0300570:intron | 30.0% |
| ATCAATGAAGAATCAACTTG+AGG | - | chr2_3:55996248-55996267 | Msa0300570:intron | 30.0% | |
| TCAATGAAGAATCAACTTGA+GGG | - | chr2_3:55996249-55996268 | Msa0300570:intron | 30.0% | |
| GAAGGAGTTTCAATTAAAAG+AGG | - | chr2_3:55996362-55996381 | Msa0300570:intron | 30.0% | |
| TTAAAAGAGGAGGAATTTGA+AGG | - | chr2_3:55996375-55996394 | Msa0300570:intron | 30.0% | |
| AGTGAAGGAAATGAAATCAA+AGG | - | chr2_3:55996401-55996420 | Msa0300570:intron | 30.0% | |
| TCAAAGCTGAATAAATTGGA+TGG | - | chr2_3:55996555-55996574 | Msa0300570:intron | 30.0% | |
| TAAATTGGATGGACAAATGA+AGG | - | chr2_3:55996566-55996585 | Msa0300570:intron | 30.0% | |
| !!! | CTCTTGCGTTTTTTTATTCA+TGG | - | chr2_3:55996900-55996919 | Msa0300570:CDS | 30.0% |
| !!! | CGTTTTTTTATTCATGGCTA+AGG | - | chr2_3:55996906-55996925 | Msa0300570:CDS | 30.0% |
| AAGTATATTGCAAATGGTGT+AGG | - | chr2_3:55996993-55997012 | Msa0300570:CDS | 30.0% | |
| TCACCCATATATTTCAATCT+AGG | - | chr2_3:55997173-55997192 | Msa0300570:CDS | 30.0% | |
| ! | CAGTAAATGATAGTGACAAT+AGG | + | chr2_3:55997251-55997270 | None:intergenic | 30.0% |
| !! | TTCTTACACAGTGGATTAAT+GGG | + | chr2_3:55997474-55997493 | None:intergenic | 30.0% |
| ATTAATCCACTGTGTAAGAA+GGG | - | chr2_3:55997474-55997493 | Msa0300570:intron | 30.0% | |
| AGAGAATAGTGAAGATTCTT+TGG | - | chr2_3:55997629-55997648 | Msa0300570:intron | 30.0% | |
| !!! | AATTTTGGAGCTTTTTGCAT+TGG | - | chr2_3:55997716-55997735 | Msa0300570:intron | 30.0% |
| ! | GGTTTTGCAAATAAAGTTTC+TGG | - | chr2_3:55997780-55997799 | Msa0300570:intron | 30.0% |
| ATGTTAATTCAGAACTGCTT+TGG | - | chr2_3:55997804-55997823 | Msa0300570:intron | 30.0% | |
| ATCCTAACTGTAGATAAGAA+TGG | + | chr2_3:55997924-55997943 | None:intergenic | 30.0% | |
| AAAAAAATCCACCCTATAGT+GGG | + | chr2_3:55997990-55998009 | None:intergenic | 30.0% | |
| TAAAAAAATCCACCCTATAG+TGG | + | chr2_3:55997991-55998010 | None:intergenic | 30.0% | |
| ! | ACCCATTTTATCATTTATGG+TGG | - | chr2_3:55998010-55998029 | Msa0300570:CDS | 30.0% |
| ! | GTCTAGAATAATAGGTGATT+TGG | + | chr2_3:55998233-55998252 | None:intergenic | 30.0% |
| ! | ACTGACATGTCTAGAATAAT+AGG | + | chr2_3:55998241-55998260 | None:intergenic | 30.0% |
| TTGCTCCACAAATTGAAAAA+TGG | + | chr2_3:55998328-55998347 | None:intergenic | 30.0% | |
| TTCAATTTGTGGAGCAAAAA+AGG | - | chr2_3:55998331-55998350 | Msa0300570:CDS | 30.0% | |
| TCAATTTGTGGAGCAAAAAA+GGG | - | chr2_3:55998332-55998351 | Msa0300570:CDS | 30.0% | |
| AAGGGATCTGTTAAAGAAAA+TGG | - | chr2_3:55998350-55998369 | Msa0300570:CDS | 30.0% | |
| TGTCAATTCTCTCTAAACAA+AGG | + | chr2_3:55998528-55998547 | None:intergenic | 30.0% | |
| TTTAGAGAGAATTGACATCT+TGG | - | chr2_3:55998531-55998550 | Msa0300570:CDS | 30.0% | |
| CAACAAAAATCTAAGCAGAT+TGG | + | chr2_3:55998677-55998696 | None:intergenic | 30.0% | |
| TTGTTGAGAATCTTATCAAG+AGG | - | chr2_3:55998749-55998768 | Msa0300570:CDS | 30.0% | |
| !! | GGTTCTTCTGTTTTTCTTAT+TGG | - | chr2_3:55998918-55998937 | Msa0300570:CDS | 30.0% |
| ATTCATAACCAGTGTGAAAA+TGG | + | chr2_3:55998965-55998984 | None:intergenic | 30.0% | |
| ATGTATTTGAACTCAGGATA+AGG | - | chr2_3:55998996-55999015 | Msa0300570:CDS | 30.0% | |
| AGATCAAGAAATTGCTAGTT+TGG | - | chr2_3:55999023-55999042 | Msa0300570:CDS | 30.0% | |
| ! | AACTGTTCAACAATGCATTT+TGG | - | chr2_3:55999047-55999066 | Msa0300570:CDS | 30.0% |
| ! | TCTGATATGCCAAAGTTTTG+TGG | - | chr2_3:55995460-55995479 | Msa0300570:CDS | 35.0% |
| TCATCATGACCACAAAACTT+TGG | + | chr2_3:55995472-55995491 | None:intergenic | 35.0% | |
| TGAGGAAAACTTTGTGACAA+TGG | + | chr2_3:55995526-55995545 | None:intergenic | 35.0% | |
| GTTCCCAAACTTAAAATCTG+AGG | + | chr2_3:55995544-55995563 | None:intergenic | 35.0% | |
| CTCTTCAGTATCTCTCTTTA+TGG | + | chr2_3:55995833-55995852 | None:intergenic | 35.0% | |
| TATCAAGGAGTTTGTAGTGA+AGG | - | chr2_3:55995948-55995967 | Msa0300570:intron | 35.0% | |
| TGTATCAAGCTCTATCTCTT+TGG | + | chr2_3:55996148-55996167 | None:intergenic | 35.0% | |
| TTAGAGTCTGAAAAGGAGAA+TGG | - | chr2_3:55996201-55996220 | Msa0300570:intron | 35.0% | |
| GGAGTTTCAATTAAAAGAGG+AGG | - | chr2_3:55996365-55996384 | Msa0300570:intron | 35.0% | |
| GAAGGAAATGAAATCAAAGG+TGG | - | chr2_3:55996404-55996423 | Msa0300570:intron | 35.0% | |
| GATTGTTTACCTGTCAACTT+AGG | + | chr2_3:55996594-55996613 | None:intergenic | 35.0% | |
| CTAGAAACAGTTGCACTAAT+AGG | + | chr2_3:55997056-55997075 | None:intergenic | 35.0% | |
| ATGAAATCAAACACTGTCTC+TGG | - | chr2_3:55997092-55997111 | Msa0300570:CDS | 35.0% | |
| ! | TGACGCTTCTAGAAATATGA+GGG | - | chr2_3:55997269-55997288 | Msa0300570:intron | 35.0% |
| ATATGCAGTTGCATCTTTCA+TGG | - | chr2_3:55997314-55997333 | Msa0300570:intron | 35.0% | |
| CGATTAAGTCATACCATTGA+TGG | - | chr2_3:55997342-55997361 | Msa0300570:intron | 35.0% | |
| !! | CTTCTTACACAGTGGATTAA+TGG | + | chr2_3:55997475-55997494 | None:intergenic | 35.0% |
| CATTAATCCACTGTGTAAGA+AGG | - | chr2_3:55997473-55997492 | Msa0300570:intron | 35.0% | |
| GTTGTTCTAGTAGAAAGATG+CGG | + | chr2_3:55997527-55997546 | None:intergenic | 35.0% | |
| AATGGCATGGAAAGTAACAA+TGG | + | chr2_3:55997906-55997925 | None:intergenic | 35.0% | |
| AACTGTAGATAAGAATGGCA+TGG | + | chr2_3:55997919-55997938 | None:intergenic | 35.0% | |
| TGCCATTCTTATCTACAGTT+AGG | - | chr2_3:55997919-55997938 | Msa0300570:intron | 35.0% | |
| TATCTACAGTTAGGATGAGA+TGG | - | chr2_3:55997928-55997947 | Msa0300570:intron | 35.0% | |
| TTATGGCCATTCATGATCAA+AGG | - | chr2_3:55997951-55997970 | Msa0300570:CDS | 35.0% | |
| !! | TTATGGTGGATGTAGTCTTT+AGG | - | chr2_3:55998024-55998043 | Msa0300570:CDS | 35.0% |
| AAAGTAGGGAAGGAAAACAT+GGG | + | chr2_3:55998167-55998186 | None:intergenic | 35.0% | |
| AAAAGTAGGGAAGGAAAACA+TGG | + | chr2_3:55998168-55998187 | None:intergenic | 35.0% | |
| !! | GTTTTCCTTCCCTACTTTTA+TGG | - | chr2_3:55998169-55998188 | Msa0300570:CDS | 35.0% |
| TGTGGTGATCCATAAAAGTA+GGG | + | chr2_3:55998181-55998200 | None:intergenic | 35.0% | |
| ATGTGGTGATCCATAAAAGT+AGG | + | chr2_3:55998182-55998201 | None:intergenic | 35.0% | |
| !! | TGACATCTTGGTGTTAATCT+TGG | - | chr2_3:55998543-55998562 | Msa0300570:CDS | 35.0% |
| ! | TACATATTTTCTGCCTGTTC+TGG | - | chr2_3:55998708-55998727 | Msa0300570:CDS | 35.0% |
| GATTCTCAACAAAATCTGCA+AGG | + | chr2_3:55998741-55998760 | None:intergenic | 35.0% | |
| ! | CACAAATCAGTTTGGCATTT+TGG | + | chr2_3:55998861-55998880 | None:intergenic | 35.0% |
| ACTGTTCACACAAATCAGTT+TGG | + | chr2_3:55998869-55998888 | None:intergenic | 35.0% | |
| CAGAAGAACCTTGATTTCAA+CGG | + | chr2_3:55998908-55998927 | None:intergenic | 35.0% | |
| ! | CAAACATTCCATTTTCACAC+TGG | - | chr2_3:55998954-55998973 | Msa0300570:CDS | 35.0% |
| ACTAGCAATTTCTTGATCTC+TGG | + | chr2_3:55999022-55999041 | None:intergenic | 35.0% | |
| AGAAACATGCAAGGAGGAAT+CGG | + | chr2_3:55995632-55995651 | None:intergenic | 40.0% | |
| CTTAACAGAAACATGCAAGG+AGG | + | chr2_3:55995638-55995657 | None:intergenic | 40.0% | |
| ! | TCTTGGGCATGATGATGATA+TGG | + | chr2_3:55995676-55995695 | None:intergenic | 40.0% |
| TGAAGTTTGTGACAAAGTGC+AGG | - | chr2_3:55995909-55995928 | Msa0300570:intron | 40.0% | |
| ACATTGATAAGGACCGTGAA+AGG | - | chr2_3:55996061-55996080 | Msa0300570:intron | 40.0% | |
| TCGTGCTGAAATGAAGGAAT+TGG | - | chr2_3:55996224-55996243 | Msa0300570:intron | 40.0% | |
| AATCCTTTATTCGTCCTTCC+AGG | + | chr2_3:55996308-55996327 | None:intergenic | 40.0% | |
| ATCAAGAGAGAAGCAATTCG+AGG | - | chr2_3:55996332-55996351 | Msa0300570:intron | 40.0% | |
| TCAAGAGAGAAGCAATTCGA+GGG | - | chr2_3:55996333-55996352 | Msa0300570:intron | 40.0% | |
| GGAAATGAAATCAAAGGTGG+AGG | - | chr2_3:55996407-55996426 | Msa0300570:intron | 40.0% | |
| GGAACTCGAAGATCAAGTTA+AGG | - | chr2_3:55996428-55996447 | Msa0300570:intron | 40.0% | |
| ! | AGCTCATTCACCTTTTCCTT+CGG | + | chr2_3:55996489-55996508 | None:intergenic | 40.0% |
| CGTGTGTGTGATATGAAAAC+TGG | + | chr2_3:55996813-55996832 | None:intergenic | 40.0% | |
| AACCTCCTGACAAACATTGA+GGG | - | chr2_3:55997019-55997038 | Msa0300570:CDS | 40.0% | |
| TGTCTCTGGTGATTCAGTTA+AGG | - | chr2_3:55997106-55997125 | Msa0300570:CDS | 40.0% | |
| ! | CTGACGCTTCTAGAAATATG+AGG | - | chr2_3:55997268-55997287 | Msa0300570:intron | 40.0% |
| ! | CTGCAAACTTGTTCCATCAA+TGG | + | chr2_3:55997358-55997377 | None:intergenic | 40.0% |
| TGATGGAACAAGTTTGCAGT+TGG | - | chr2_3:55997359-55997378 | Msa0300570:intron | 40.0% | |
| GAAGATTCTTTGGCAGTTCT+TGG | - | chr2_3:55997639-55997658 | Msa0300570:intron | 40.0% | |
| TATGGAGATGTTTCAGACTC+TGG | - | chr2_3:55997758-55997777 | Msa0300570:intron | 40.0% | |
| ATGGAGATGTTTCAGACTCT+GGG | - | chr2_3:55997759-55997778 | Msa0300570:intron | 40.0% | |
| CAGTTAGGATGAGATGGTTA+TGG | - | chr2_3:55997934-55997953 | Msa0300570:intron | 40.0% | |
| GTGATCCATAAAAGTAGGGA+AGG | + | chr2_3:55998177-55998196 | None:intergenic | 40.0% | |
| ACAACCAAGAGAATGTCAGT+TGG | - | chr2_3:55998272-55998291 | Msa0300570:CDS | 40.0% | |
| AATGCCAACTGACATTCTCT+TGG | + | chr2_3:55998279-55998298 | None:intergenic | 40.0% | |
| TAAACAAAGGCGAGAACTGT+GGG | + | chr2_3:55998515-55998534 | None:intergenic | 40.0% | |
| AACCAACTCCGTTGAAATCA+AGG | - | chr2_3:55998897-55998916 | Msa0300570:CDS | 40.0% | |
| AACCTTGATTTCAACGGAGT+TGG | + | chr2_3:55998902-55998921 | None:intergenic | 40.0% | |
| ! | ACAGTCTGAGGTTCTTACAA+AGG | - | chr2_3:55999080-55999099 | Msa0300570:CDS | 40.0% |
| GAGGTTCTTACAAAGGAGAT+TGG | - | chr2_3:55999087-55999106 | Msa0300570:CDS | 40.0% | |
| CTTGAGCTACAAGCACATAA+AGG | - | chr2_3:55999120-55999139 | Msa0300570:CDS | 40.0% | |
| AAACATGCAAGGAGGAATCG+GGG | + | chr2_3:55995630-55995649 | None:intergenic | 45.0% | |
| GAAACATGCAAGGAGGAATC+GGG | + | chr2_3:55995631-55995650 | None:intergenic | 45.0% | |
| CGTAAGGTCTTTCTTCAGTG+AGG | + | chr2_3:55995746-55995765 | None:intergenic | 45.0% | |
| GGAAGAGCAGCTCTATTTGA+TGG | - | chr2_3:55995969-55995988 | Msa0300570:intron | 45.0% | |
| TGATAAGGACCGTGAAAGGA+AGG | - | chr2_3:55996065-55996084 | Msa0300570:intron | 45.0% | |
| GTTCCTCTTCCTTCCTTTCA+CGG | + | chr2_3:55996077-55996096 | None:intergenic | 45.0% | |
| GAATGGTCGTGCTGAAATGA+AGG | - | chr2_3:55996218-55996237 | Msa0300570:intron | 45.0% | |
| TGAGTCAGAGAAGAAGAACC+TGG | - | chr2_3:55996287-55996306 | Msa0300570:intron | 45.0% | |
| TCAGAGAAGAAGAACCTGGA+AGG | - | chr2_3:55996291-55996310 | Msa0300570:intron | 45.0% | |
| GAACCTGGAAGGACGAATAA+AGG | - | chr2_3:55996302-55996321 | Msa0300570:intron | 45.0% | |
| GCAATTCGAGGGACAAATGA+AGG | - | chr2_3:55996344-55996363 | Msa0300570:intron | 45.0% | |
| GGAATTTGAAGGCAGAGTGA+AGG | - | chr2_3:55996386-55996405 | Msa0300570:intron | 45.0% | |
| GGAGCTCGAATCAAAGAAGA+AGG | - | chr2_3:55996449-55996468 | Msa0300570:intron | 45.0% | |
| GGAATTTGAAGAACGTCCGA+AGG | - | chr2_3:55996470-55996489 | Msa0300570:intron | 45.0% | |
| TGAAGAACGTCCGAAGGAAA+AGG | - | chr2_3:55996476-55996495 | Msa0300570:intron | 45.0% | |
| AGGAAAAGGTGAATGAGCTC+AGG | - | chr2_3:55996490-55996509 | Msa0300570:intron | 45.0% | |
| GCAGTTTGAAAGACAAGCCA+AGG | - | chr2_3:55996524-55996543 | Msa0300570:intron | 45.0% | |
| !! | CAGCTTTGAATCAGGATCCT+TGG | + | chr2_3:55996544-55996563 | None:intergenic | 45.0% |
| ! | ATGAAGGAGCCTAAGTTGAC+AGG | - | chr2_3:55996582-55996601 | Msa0300570:intron | 45.0% |
| CAACCTCCTGACAAACATTG+AGG | - | chr2_3:55997018-55997037 | Msa0300570:CDS | 45.0% | |
| ACCTCCTGACAAACATTGAG+GGG | - | chr2_3:55997020-55997039 | Msa0300570:CDS | 45.0% | |
| AATGCCCCTCAATGTTTGTC+AGG | + | chr2_3:55997027-55997046 | None:intergenic | 45.0% | |
| ACTGTTGCAGTTGAGTCACA+TGG | - | chr2_3:55997396-55997415 | Msa0300570:intron | 45.0% | |
| TTGTCTCCCTTCTTACACAG+TGG | + | chr2_3:55997483-55997502 | None:intergenic | 45.0% | |
| TGCTCAGCACAAGATAGCTA+TGG | - | chr2_3:55997740-55997759 | Msa0300570:intron | 45.0% | |
| TCGGCACCTTTGATCATGAA+TGG | + | chr2_3:55997960-55997979 | None:intergenic | 45.0% | |
| !! | CCCTATAGTGGGCAAGTAAT+CGG | + | chr2_3:55997979-55997998 | None:intergenic | 45.0% |
| CCGATTACTTGCCCACTATA+GGG | - | chr2_3:55997976-55997995 | Msa0300570:CDS | 45.0% | |
| ATTACTTGCCCACTATAGGG+TGG | - | chr2_3:55997979-55997998 | Msa0300570:CDS | 45.0% | |
| AAACAAAGGCGAGAACTGTG+GGG | + | chr2_3:55998514-55998533 | None:intergenic | 45.0% | |
| CTAAACAAAGGCGAGAACTG+TGG | + | chr2_3:55998516-55998535 | None:intergenic | 45.0% | |
| GGATTGCAAACTACAGTCTG+AGG | - | chr2_3:55999068-55999087 | Msa0300570:CDS | 45.0% | |
| ATTGACGGGGAGCAAGAATC+TGG | - | chr2_3:55996633-55996652 | Msa0300570:intron | 50.0% | |
| GCCGATTACTTGCCCACTAT+AGG | - | chr2_3:55997975-55997994 | Msa0300570:CDS | 50.0% | |
| AACAAAGGCGAGAACTGTGG+GGG | + | chr2_3:55998513-55998532 | None:intergenic | 50.0% | |
| AGAGCGCAAGCTAGAGCTCA+AGG | - | chr2_3:55996005-55996024 | Msa0300570:intron | 55.0% | |
| GGACCGTGAAAGGAAGGAAG+AGG | - | chr2_3:55996071-55996090 | Msa0300570:intron | 55.0% | |
| GCCCCTCAATGTTTGTCAGG+AGG | + | chr2_3:55997024-55997043 | None:intergenic | 55.0% | |
| GCAAGGTGCAAGACCAGAAC+AGG | + | chr2_3:55998724-55998743 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 55995442 | 55999149 | 55995442 | ID=Msa0300570;Name=Msa0300570 |
| chr2_3 | mRNA | 55995442 | 55999149 | 55995442 | ID=Msa0300570-mRNA-1;Parent=Msa0300570;Name=Msa0300570-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|4|0|667 |
| chr2_3 | exon | 55997937 | 55999149 | 55997937 | ID=Msa0300570-mRNA-1:exon:17952;Parent=Msa0300570-mRNA-1 |
| chr2_3 | exon | 55996790 | 55997269 | 55996790 | ID=Msa0300570-mRNA-1:exon:17951;Parent=Msa0300570-mRNA-1 |
| chr2_3 | exon | 55995673 | 55995845 | 55995673 | ID=Msa0300570-mRNA-1:exon:17950;Parent=Msa0300570-mRNA-1 |
| chr2_3 | exon | 55995442 | 55995579 | 55995442 | ID=Msa0300570-mRNA-1:exon:17949;Parent=Msa0300570-mRNA-1 |
| chr2_3 | CDS | 55997937 | 55999149 | 55997937 | ID=Msa0300570-mRNA-1:cds;Parent=Msa0300570-mRNA-1 |
| chr2_3 | CDS | 55996790 | 55997269 | 55996790 | ID=Msa0300570-mRNA-1:cds;Parent=Msa0300570-mRNA-1 |
| chr2_3 | CDS | 55995673 | 55995845 | 55995673 | ID=Msa0300570-mRNA-1:cds;Parent=Msa0300570-mRNA-1 |
| chr2_3 | CDS | 55995442 | 55995579 | 55995442 | ID=Msa0300570-mRNA-1:cds;Parent=Msa0300570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
