AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0344150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0344150 MtrunA17_Chr3g0108441 98.837 430 3 1 1 428 1 430 0.0 869
Msa0344150 MtrunA17_Chr3g0108491 98.837 430 3 1 1 428 1 430 0.0 868
Msa0344150 MtrunA17_CPg0493021 98.837 430 3 1 1 428 1 430 0.0 868
Msa0344150 MtrunA17_Chr4g0016661 98.837 430 3 1 1 428 1 430 0.0 868
Msa0344150 MtrunA17_CPg0493001 99.303 287 2 0 429 715 7 293 0.0 585
Msa0344150 MtrunA17_Chr4g0016671 99.303 287 2 0 429 715 7 293 0.0 585
Msa0344150 MtrunA17_Chr8g0342181 60.767 339 58 4 90 428 1 264 1.43e-120 363
Msa0344150 MtrunA17_Chr4g0015581 99.429 175 1 0 541 715 1 175 3.56e-117 357
Msa0344150 MtrunA17_Chr4g0015551 75.000 212 8 1 116 327 5 171 1.13e-97 299
Msa0344150 MtrunA17_Chr3g0096371 95.652 115 5 0 168 282 1 115 1.50e-70 226
Msa0344150 MtrunA17_Chr4g0002751 82.796 93 16 0 128 220 1 93 4.23e-44 153
Msa0344150 MtrunA17_Chr2g0318321 95.652 69 3 0 429 497 26 94 6.20e-39 139
Msa0344150 MtrunA17_Chr4g0030401 28.247 308 191 6 140 423 248 549 1.09e-29 126
Msa0344150 MtrunA17_Chr4g0030391 29.126 309 187 6 140 423 247 548 1.30e-29 126
Msa0344150 MtrunA17_Chr4g0015571 100.000 44 0 0 429 472 7 50 2.73e-23 93.6
Msa0344150 MtrunA17_Chr5g0406121 28.526 312 190 6 141 423 241 548 4.28e-23 105
Msa0344150 MtrunA17_Chr4g0044991 25.949 316 183 7 151 423 317 624 6.97e-20 95.5
Msa0344150 MtrunA17_Chr4g0002761 65.455 55 19 0 375 429 1 55 1.63e-15 72.0
Msa0344150 MtrunA17_Chr8g0353071 28.053 303 186 10 145 422 211 506 2.30e-12 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0344150 ATCG00180.1 92.176 409 30 1 20 428 142 548 0.0 780
Msa0344150 ATCG00170.1 91.003 289 24 1 429 715 3 291 1.79e-174 537
Msa0344150 AT5G60040.1 28.710 310 188 5 141 423 250 553 1.72e-28 123
Msa0344150 AT5G60040.2 28.710 310 188 5 141 423 260 563 2.24e-28 122
Msa0344150 AT4G35800.2 28.710 310 192 5 141 423 242 549 3.54e-24 109
Msa0344150 AT4G35800.1 28.710 310 192 5 141 423 242 549 3.54e-24 109
Msa0344150 AT3G57660.2 24.806 387 215 12 151 491 335 691 6.48e-18 89.4
Msa0344150 AT3G57660.1 24.806 387 215 12 151 491 348 704 7.38e-18 89.4
Msa0344150 AT1G63020.1 23.978 367 238 10 79 422 152 500 2.21e-14 77.8
Msa0344150 AT1G63020.2 23.978 367 238 10 79 422 152 500 2.21e-14 77.8
Msa0344150 AT1G63020.3 23.913 368 239 10 79 423 152 501 2.59e-14 77.8
Msa0344150 AT1G63020.4 23.978 367 238 10 79 422 152 500 2.76e-14 77.4
Msa0344150 AT1G63020.5 27.461 193 124 3 247 423 1 193 4.87e-13 73.6
Msa0344150 AT2G40030.2 29.016 193 121 3 246 422 310 502 3.40e-11 67.8
Msa0344150 AT2G40030.1 29.016 193 121 3 246 422 310 502 3.44e-11 67.8

Find 169 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGTATCAAAATTCTTTC+TGG 0.155430 3_1:-2695851 None:intergenic
TTCTGGTATCATTCCATTTC+GGG 0.158141 3_1:-2695834 None:intergenic
TGAACAACAAAGTTCTATTT+TGG 0.177929 3_1:+2695370 Msa0344150:CDS
TCTGGATTTAAGAATTATTA+TGG 0.190370 3_1:+2693519 Msa0344150:CDS
TCTGCTAATAAGTCGTTTAA+TGG 0.223864 3_1:-2695198 None:intergenic
ACCTCTTGTCTCCGGCTATT+GGG 0.225839 3_1:+2694463 Msa0344150:CDS
ATCCTCTCATTCCGACTAAT+TGG 0.248879 3_1:-2695577 None:intergenic
TGTTCATGTGCCTTTATCTT+TGG 0.264426 3_1:+2694398 Msa0344150:CDS
CCAACTCAAGATATGCTTAT+AGG 0.271742 3_1:+2694501 Msa0344150:CDS
CATTATATGGACTGGATTAA+AGG 0.289410 3_1:-2695516 None:intergenic
AACCTCTTGTCTCCGGCTAT+TGG 0.290298 3_1:+2694462 Msa0344150:CDS
GCACGTCCTTCTACTAAAAT+AGG 0.292699 3_1:-2694312 None:intergenic
GGATCTGCCGATTGTGTTAT+GGG 0.297223 3_1:+2696031 Msa0344150:CDS
TTTCTGGTATCATTCCATTT+CGG 0.299397 3_1:-2695835 None:intergenic
TAGATCTACTTGTTGTTAAT+AGG 0.299908 3_1:-2693834 None:intergenic
TGGATCTGCCGATTGTGTTA+TGG 0.301508 3_1:+2696030 Msa0344150:CDS
GGGTCAGTCATCCTAAAATT+AGG 0.301712 3_1:-2695494 None:intergenic
AGCGCCTACTTTGCATAGAT+TGG 0.308716 3_1:+2694272 Msa0344150:CDS
CCTCCATCTATTTGAATAAT+CGG 0.310599 3_1:-2693742 None:intergenic
TTGGTAGAATGGAAAGAATT+AGG 0.313946 3_1:+2693550 Msa0344150:CDS
TTCTCGTAAATTGCTTTGAA+TGG 0.322270 3_1:-2695636 None:intergenic
TTTACATCCATTAGTGTGTA+AGG 0.327520 3_1:+2694341 Msa0344150:CDS
CAGTATCCACAACCCCTTTA+CGG 0.329838 3_1:-2695700 None:intergenic
AACTTTGTTGTTCAGCATCT+TGG 0.334259 3_1:-2695361 None:intergenic
AGAAATCAAGATATTGGAAT+TGG 0.334567 3_1:+2695932 Msa0344150:CDS
TACGCCAATCCATTGAAATA+TGG 0.339395 3_1:+2695435 Msa0344150:CDS
TTGAATAATCGGTCTCAATT+CGG 0.341142 3_1:-2693731 None:intergenic
GTCGTTAGAAATCAAGATAT+TGG 0.341954 3_1:+2695926 Msa0344150:CDS
AAAGGGGTTCGAATAAATAT+TGG 0.343905 3_1:-2695989 None:intergenic
GGAAAACGAGTTGATTATTC+GGG 0.350240 3_1:+2694027 Msa0344150:CDS
AGACCGATTATTCAAATAGA+TGG 0.352617 3_1:+2693739 Msa0344150:CDS
ACTGCTACATCTATTTCATT+AGG 0.354727 3_1:+2695296 Msa0344150:CDS
TGGAAAACGAGTTGATTATT+CGG 0.358566 3_1:+2694026 Msa0344150:CDS
ATCTTGAGTTGGTACGGAAA+TGG 0.362284 3_1:-2694490 None:intergenic
GGATACTGTATTTCCAAGAT+TGG 0.364284 3_1:-2693408 None:intergenic
TGAATAATCGGTCTCAATTC+GGG 0.364643 3_1:-2693730 None:intergenic
ATTATATGGACTGGATTAAA+GGG 0.370361 3_1:-2695515 None:intergenic
TGGACTAGCCATCCTTTAGA+AGG 0.382153 3_1:-2695341 None:intergenic
TTCCGCTAGTTAATACATAA+AGG 0.382446 3_1:-2694524 None:intergenic
TTGAATCCCTTACACACTAA+TGG 0.385461 3_1:-2694348 None:intergenic
GTGGATACACTCCTTGATAA+TGG 0.387696 3_1:+2693904 Msa0344150:CDS
ATTTCTGTAAATACCCGAAA+TGG 0.389944 3_1:+2695821 Msa0344150:CDS
TTTCAGACATTTCTAATTCG+TGG 0.395006 3_1:+2694126 Msa0344150:CDS
ACGAGAACAATTAGTTGATC+TGG 0.400881 3_1:+2693501 Msa0344150:CDS
GGCGCTCTATTCAGCAATAC+TGG 0.401200 3_1:-2694255 None:intergenic
AGTATCCACAACCCCTTTAC+GGG 0.401249 3_1:-2695699 None:intergenic
AGACATAAAACCATCCATTC+TGG 0.402557 3_1:-2693691 None:intergenic
TGGATTCTTCGTTGGTAGAA+TGG 0.407733 3_1:+2693539 Msa0344150:CDS
GGATTCAATGCAGACTTTGA+TGG 0.407959 3_1:+2694363 Msa0344150:CDS
TCATGTGCCTTTATCTTTGG+AGG 0.409231 3_1:+2694401 Msa0344150:CDS
CTTGCTACGGAGCCCGTAAA+GGG 0.410011 3_1:+2695687 Msa0344150:CDS
AGCAGATTAATAGACCATTT+CGG 0.411046 3_1:+2695215 Msa0344150:CDS
GCTTGAGCCTCCAAAGATAA+AGG 0.413525 3_1:-2694408 None:intergenic
TCGAATATGAAATCCAATCT+TGG 0.418713 3_1:+2693395 Msa0344150:CDS
GACGTATTCCTACAGGTAAA+GGG 0.421613 3_1:-2696006 None:intergenic
GATTCAATGCAGACTTTGAT+GGG 0.425961 3_1:+2694364 Msa0344150:CDS
TCTTGAGTTGGTACGGAAAT+GGG 0.426083 3_1:-2694489 None:intergenic
CTCAATTCGGGAGGAAGAAC+TGG 0.430438 3_1:-2693718 None:intergenic
TCTCGTAAATTGCTTTGAAT+GGG 0.433790 3_1:-2695635 None:intergenic
ATTCTGGTTCTATATTTGTT+CGG 0.435196 3_1:-2693675 None:intergenic
TTATTATGACCGTCCCTCAT+TGG 0.440271 3_1:-2693940 None:intergenic
TCTACCAGGTCCCCATGAAT+AGG 0.440638 3_1:-2696060 None:intergenic
CATACCATATTTCAATGGAT+TGG 0.443039 3_1:-2695439 None:intergenic
CAGATTGCGGTACGATTCGC+GGG 0.446348 3_1:+2695798 Msa0344150:CDS
TTTGCATAGATTGGGCATAC+AGG 0.446557 3_1:+2694281 Msa0344150:CDS
TGTAGCATACCATATTTCAA+TGG 0.450731 3_1:-2695444 None:intergenic
CTGGATCAAGTAAAGACTCT+AGG 0.462436 3_1:+2695260 Msa0344150:CDS
CACTGACAATGAAAATGAAT+GGG 0.463118 3_1:+2693585 Msa0344150:CDS
CTAGAGTCTTTACTTGATCC+AGG 0.463607 3_1:-2695259 None:intergenic
CCACTGACAATGAAAATGAA+TGG 0.464389 3_1:+2693584 Msa0344150:CDS
AGACGTATTCCTACAGGTAA+AGG 0.465006 3_1:-2696007 None:intergenic
TGGAAAGAATTAGGAGAAGA+GGG 0.467304 3_1:+2693559 Msa0344150:CDS
GTAGCAGACGATATATATAT+CGG 0.471989 3_1:+2695890 Msa0344150:CDS
GCGCCTACTTTGCATAGATT+GGG 0.476543 3_1:+2694273 Msa0344150:CDS
TGAAGTATTTCCCATACAAT+CGG 0.477354 3_1:-2694213 None:intergenic
CCTCTTGTCTCCGGCTATTG+GGG 0.480180 3_1:+2694464 Msa0344150:CDS
GGGCGTTCTGTTATTGTCGT+AGG 0.483193 3_1:+2694048 Msa0344150:CDS
AGAGAAATTTCTAGTGGAGC+AGG 0.488408 3_1:+2693472 Msa0344150:CDS
GTCTTTCACAATAACGTGAT+AGG 0.489141 3_1:+2695167 Msa0344150:CDS
GTTATTGTGAAAGACTAGAT+TGG 0.489846 3_1:-2695159 None:intergenic
TCTTGCTACGGAGCCCGTAA+AGG 0.490200 3_1:+2695686 Msa0344150:CDS
TGGAGGGAAACTAATGAGTT+CGG 0.494350 3_1:+2693759 Msa0344150:CDS
GGCATATACATCACACATCC+TGG 0.495134 3_1:+2695241 Msa0344150:CDS
TAACAATACCTTCTAAAGGA+TGG 0.495965 3_1:+2695333 Msa0344150:CDS
CGAAATAGAGAAATTTCTAG+TGG 0.496839 3_1:+2693466 Msa0344150:CDS
TAGCTCTATTGCTATTTCGC+GGG 0.496998 3_1:-2694103 None:intergenic
AATTATTATGGATTCTTCGT+TGG 0.499116 3_1:+2693531 Msa0344150:CDS
TCATACAAACCTCTTGTCTC+CGG 0.506883 3_1:+2694455 Msa0344150:CDS
ATGGGCGGAGTCCTATTCAT+GGG 0.508984 3_1:+2696049 Msa0344150:CDS
GAATGGGAAGATCGAAAAGT+AGG 0.511851 3_1:+2693601 Msa0344150:CDS
GACTCCGCCCATAACACAAT+CGG 0.512450 3_1:-2696038 None:intergenic
CCTCGTAATCGTAAGAAAGT+AGG 0.512515 3_1:-2693367 None:intergenic
CGGAGCCCGTAAAGGGGTTG+TGG 0.513039 3_1:+2695694 Msa0344150:CDS
AAATCAATCATTTGTCCTTG+TGG 0.513235 3_1:-2695611 None:intergenic
ATGGAAAGAATTAGGAGAAG+AGG 0.513927 3_1:+2693558 Msa0344150:CDS
ATAGCTCTATTGCTATTTCG+CGG 0.516257 3_1:-2694104 None:intergenic
TAGATGTAGCAGTAGCTTGA+CGG 0.516966 3_1:-2695286 None:intergenic
TATGGGCGGAGTCCTATTCA+TGG 0.517790 3_1:+2696048 Msa0344150:CDS
GAGTTGCTAAGAGTAAAATA+CGG 0.520079 3_1:+2694181 Msa0344150:CDS
AGATTTCGAGAGACTCTGCT+TGG 0.523467 3_1:+2694006 Msa0344150:CDS
ATGTATATGCCATTCCGAAA+TGG 0.525535 3_1:-2695229 None:intergenic
AGACTTTGATGGGGATCAAA+TGG 0.531054 3_1:+2694374 Msa0344150:CDS
ACAGATTGCGGTACGATTCG+CGG 0.531220 3_1:+2695797 Msa0344150:CDS
GTCCGCGGATTCCATTATCA+AGG 0.532137 3_1:-2693915 None:intergenic
CCTATAAGCATATCTTGAGT+TGG 0.532621 3_1:-2694501 None:intergenic
TTGGATAGGATCCAATAAGA+TGG 0.534215 3_1:-2693312 None:intergenic
GAATATATAATTTCTTGCTA+CGG 0.534554 3_1:+2695674 Msa0344150:CDS
CAGCTTCTCCCAATTCTACC+AGG 0.535523 3_1:-2696074 None:intergenic
GATATAATTGAGGGCAAAGA+GGG 0.535939 3_1:+2693982 Msa0344150:CDS
TGGATCAAGTAAAGACTCTA+GGG 0.538268 3_1:+2695261 Msa0344150:CDS
AATACTTCAAGAAGTTATGC+GGG 0.538847 3_1:+2694227 Msa0344150:CDS
AAGCATATCTTGAGTTGGTA+CGG 0.543078 3_1:-2694496 None:intergenic
GATCCAAGACGTATTCCTAC+AGG 0.544747 3_1:-2696013 None:intergenic
TTACCTGTAGGAATACGTCT+TGG 0.547868 3_1:+2696010 Msa0344150:CDS
CCTTTGAAAATCGGACGTGA+GGG 0.548394 3_1:-2693282 None:intergenic
TGACACATTACTAATTCCCC+TGG 0.549045 3_1:-2693859 None:intergenic
GAACAAATATAGAACCAGAA+TGG 0.550621 3_1:+2693677 Msa0344150:CDS
CCCTTTGAAAATCGGACGTG+AGG 0.550708 3_1:-2693283 None:intergenic
ATTCGAACCCCTTTACCTGT+AGG 0.555112 3_1:+2695998 Msa0344150:CDS
AGTTGCTAAGAGTAAAATAC+GGG 0.563519 3_1:+2694182 Msa0344150:CDS
TTACATCCATTAGTGTGTAA+GGG 0.565613 3_1:+2694342 Msa0344150:CDS
AAATATAGAACCAGAATGGA+TGG 0.566690 3_1:+2693681 Msa0344150:CDS
TCTATAGAAGAGTTATCTAT+CGG 0.571448 3_1:+2693794 Msa0344150:CDS
GCTGTACGAACATCAGATGC+TGG 0.573261 3_1:+2695722 Msa0344150:CDS
TACACGTCGACTTGTTGAAG+TGG 0.573503 3_1:+2695751 Msa0344150:CDS
CCGATTATTCAAATAGATGG+AGG 0.576436 3_1:+2693742 Msa0344150:CDS
ATGCCCAATCTATGCAAAGT+AGG 0.578492 3_1:-2694276 None:intergenic
CACCAATTAGTCGGAATGAG+AGG 0.580106 3_1:+2695575 Msa0344150:CDS
GAGTCCTATTCATGGGGACC+TGG 0.582108 3_1:+2696056 Msa0344150:CDS
TCACTTTCATTACATCGATG+TGG 0.585158 3_1:+2694075 Msa0344150:CDS
ATTAATAGACCATTTCGGAA+TGG 0.587547 3_1:+2695220 Msa0344150:CDS
CCTACTTTCTTACGATTACG+AGG 0.587628 3_1:+2693367 Msa0344150:CDS
GAAATGGGATCCCCAATAGC+CGG 0.587924 3_1:-2694474 None:intergenic
ACGATATATATATCGGTTCA+CGG 0.590851 3_1:+2695897 Msa0344150:CDS
GGCCTTTATGTATTAACTAG+CGG 0.596927 3_1:+2694522 Msa0344150:CDS
AAAATTGGTACAAGAAGCCG+TGG 0.599616 3_1:+2693885 Msa0344150:CDS
AGCTCTATTGCTATTTCGCG+GGG 0.600779 3_1:-2694102 None:intergenic
ATTCAAAGCAATTTACGAGA+AGG 0.601229 3_1:+2695638 Msa0344150:CDS
CTCCTTGATAATGGAATCCG+CGG 0.604913 3_1:+2693913 Msa0344150:CDS
AGATATAATTGAGGGCAAAG+AGG 0.606620 3_1:+2693981 Msa0344150:CDS
CATCGATGTAATGAAAGTGA+TGG 0.607503 3_1:-2694072 None:intergenic
TCTCAAGTGCACCAATTAGT+CGG 0.615181 3_1:+2695566 Msa0344150:CDS
CCCCAATAGCCGGAGACAAG+AGG 0.615798 3_1:-2694464 None:intergenic
ATTATCAAGGAGTGTATCCA+CGG 0.619206 3_1:-2693902 None:intergenic
AATCCGCGGACAACCAATGA+GGG 0.620928 3_1:+2693927 Msa0344150:CDS
AAATACTTTAGCCGGATGAG+AGG 0.622971 3_1:+2693256 None:intergenic
CGTCCCTCATTGGTTGTCCG+CGG 0.625858 3_1:-2693930 None:intergenic
TTGCTACGGAGCCCGTAAAG+GGG 0.638134 3_1:+2695688 Msa0344150:CDS
AAATACTTCAAGAAGTTATG+CGG 0.639489 3_1:+2694226 Msa0344150:CDS
CGATTATTCAAATAGATGGA+GGG 0.639639 3_1:+2693743 Msa0344150:CDS
TTTCACAATAACGTGATAGG+TGG 0.645396 3_1:+2695170 Msa0344150:CDS
ACGTATTCCTACAGGTAAAG+GGG 0.650020 3_1:-2696005 None:intergenic
CGCGGACAACCAATGAGGGA+CGG 0.650205 3_1:+2693931 Msa0344150:CDS
GTTGTACGTCGAACAGATTG+CGG 0.659130 3_1:+2695785 Msa0344150:CDS
ACAACAAGTAGATCTACACC+AGG 0.661649 3_1:+2693841 Msa0344150:CDS
ATTCAATGCAGACTTTGATG+GGG 0.662689 3_1:+2694365 Msa0344150:CDS
GAAAACGAGTTGATTATTCG+GGG 0.664266 3_1:+2694028 Msa0344150:CDS
TGGGCGGAGTCCTATTCATG+GGG 0.665077 3_1:+2696050 Msa0344150:CDS
GAATCCGCGGACAACCAATG+AGG 0.667535 3_1:+2693926 Msa0344150:CDS
TACTTCAAGAAGTTATGCGG+GGG 0.669171 3_1:+2694229 Msa0344150:CDS
TTATATGGACTGGATTAAAG+GGG 0.684921 3_1:-2695514 None:intergenic
ATACTTCAAGAAGTTATGCG+GGG 0.687954 3_1:+2694228 Msa0344150:CDS
TCAGTATGGGAATGTACATG+CGG 0.691247 3_1:+2695403 Msa0344150:CDS
CAACAAGTAGATCTACACCA+GGG 0.701288 3_1:+2693842 Msa0344150:CDS
AACAAGTAGATCTACACCAG+GGG 0.706918 3_1:+2693843 Msa0344150:CDS
GGATTAATGTCAGATCCACA+AGG 0.711466 3_1:+2695596 Msa0344150:CDS
ATAATCGGTCTCAATTCGGG+AGG 0.712530 3_1:-2693727 None:intergenic
TTAACTAGCGGAAATCGTCG+AGG 0.734048 3_1:+2694534 Msa0344150:CDS
TCTGCCGATTGTGTTATGGG+CGG 0.746299 3_1:+2696034 Msa0344150:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGATACAAACATTAAT+TGG + chr3_1:2695860-2695879 Msa0344150:CDS 15.0%
!! TCTGGATTTAAGAATTATTA+TGG + chr3_1:2693519-2693538 Msa0344150:CDS 20.0%
!!! TTTAGAATTCTGCAATTAAA+CGG - chr3_1:2694583-2694602 None:intergenic 20.0%
!! GTACCTATTATGAAATTTAT+GGG + chr3_1:2694799-2694818 Msa0344150:intron 20.0%
!! GTAAATTTATGTTATGATAC+TGG + chr3_1:2694993-2695012 Msa0344150:intron 20.0%
!!! AAGAAATGAATCCTAATTTT+AGG + chr3_1:2695483-2695502 Msa0344150:CDS 20.0%
!! GAATATATAATTTCTTGCTA+CGG + chr3_1:2695674-2695693 Msa0344150:CDS 20.0%
!!! AAAGTAGGTTTTTTAACTAC+GGG - chr3_1:2693355-2693374 None:intergenic 25.0%
!!! GAAAGTAGGTTTTTTAACTA+CGG - chr3_1:2693356-2693375 None:intergenic 25.0%
! AATTATTATGGATTCTTCGT+TGG + chr3_1:2693531-2693550 Msa0344150:CDS 25.0%
!!! AGGAAGAAGAAAGAATTTTT+TGG + chr3_1:2693621-2693640 Msa0344150:CDS 25.0%
!!! ATTCTGGTTCTATATTTGTT+CGG - chr3_1:2693678-2693697 None:intergenic 25.0%
! TCTATAGAAGAGTTATCTAT+CGG + chr3_1:2693794-2693813 Msa0344150:CDS 25.0%
!!! TAGATCTACTTGTTGTTAAT+AGG - chr3_1:2693837-2693856 None:intergenic 25.0%
! AGTAATGTGTCAAGAAAAAT+TGG + chr3_1:2693870-2693889 Msa0344150:CDS 25.0%
!! ATCGTTTTCAGATATAATTG+AGG + chr3_1:2693972-2693991 Msa0344150:CDS 25.0%
!! TCGTTTTCAGATATAATTGA+GGG + chr3_1:2693973-2693992 Msa0344150:CDS 25.0%
! AAATACTTCAAGAAGTTATG+CGG + chr3_1:2694226-2694245 Msa0344150:CDS 25.0%
!!! TTTCAACCTATTTTAGTAGA+AGG + chr3_1:2694306-2694325 Msa0344150:CDS 25.0%
! TCATAGGAATTGCAAAAAAA+GGG - chr3_1:2694654-2694673 None:intergenic 25.0%
! ATCATAGGAATTGCAAAAAA+AGG - chr3_1:2694655-2694674 None:intergenic 25.0%
!! TAAATTTCGATAGTCCTTTT+TGG + chr3_1:2694703-2694722 Msa0344150:intron 25.0%
! GGTACCTATTATGAAATTTA+TGG + chr3_1:2694798-2694817 Msa0344150:intron 25.0%
! ATGCCCATAAATTTCATAAT+AGG - chr3_1:2694805-2694824 None:intergenic 25.0%
! TGATTAGATACCATATGAAT+AGG - chr3_1:2694943-2694962 None:intergenic 25.0%
! ATGGTATCTAATCATATAGA+TGG + chr3_1:2694949-2694968 Msa0344150:intron 25.0%
! ATAACATAAATTTACCTAGC+TGG - chr3_1:2694988-2695007 None:intergenic 25.0%
! CGTGAATAAACATAAAGAAA+AGG + chr3_1:2695054-2695073 Msa0344150:intron 25.0%
! AATGAATTTGAGTCAATGAT+TGG - chr3_1:2695087-2695106 None:intergenic 25.0%
!! CTTTTAACAATACCTTCTAA+AGG + chr3_1:2695329-2695348 Msa0344150:CDS 25.0%
!! TGAACAACAAAGTTCTATTT+TGG + chr3_1:2695370-2695389 Msa0344150:CDS 25.0%
! TTGGAAAAACATAATCAGTA+TGG + chr3_1:2695389-2695408 Msa0344150:CDS 25.0%
! TGGAAAAACATAATCAGTAT+GGG + chr3_1:2695390-2695409 Msa0344150:CDS 25.0%
!!! ATTATATGGACTGGATTAAA+GGG - chr3_1:2695518-2695537 None:intergenic 25.0%
! GTTTGTATCAAAATTCTTTC+TGG - chr3_1:2695854-2695873 None:intergenic 25.0%
! AGAAATCAAGATATTGGAAT+TGG + chr3_1:2695932-2695951 Msa0344150:CDS 25.0%
AGCAAACGAAAAATTTGGAT+AGG - chr3_1:2693329-2693348 None:intergenic 30.0%
! ATCCAAATTTTTCGTTTGCT+AGG + chr3_1:2693329-2693348 Msa0344150:CDS 30.0%
TCGAATATGAAATCCAATCT+TGG + chr3_1:2693395-2693414 Msa0344150:CDS 30.0%
! CGAAATAGAGAAATTTCTAG+TGG + chr3_1:2693466-2693485 Msa0344150:CDS 30.0%
TTGGTAGAATGGAAAGAATT+AGG + chr3_1:2693550-2693569 Msa0344150:CDS 30.0%
CACTGACAATGAAAATGAAT+GGG + chr3_1:2693585-2693604 Msa0344150:CDS 30.0%
GAACAAATATAGAACCAGAA+TGG + chr3_1:2693677-2693696 Msa0344150:CDS 30.0%
AAATATAGAACCAGAATGGA+TGG + chr3_1:2693681-2693700 Msa0344150:CDS 30.0%
TTGAATAATCGGTCTCAATT+CGG - chr3_1:2693734-2693753 None:intergenic 30.0%
AGACCGATTATTCAAATAGA+TGG + chr3_1:2693739-2693758 Msa0344150:CDS 30.0%
CCTCCATCTATTTGAATAAT+CGG - chr3_1:2693745-2693764 None:intergenic 30.0%
CGATTATTCAAATAGATGGA+GGG + chr3_1:2693743-2693762 Msa0344150:CDS 30.0%
!! TGGAAAACGAGTTGATTATT+CGG + chr3_1:2694026-2694045 Msa0344150:CDS 30.0%
TTTCAGACATTTCTAATTCG+TGG + chr3_1:2694126-2694145 Msa0344150:CDS 30.0%
! AAACATTTTGCTTCGAACAT+AGG + chr3_1:2694159-2694178 Msa0344150:CDS 30.0%
GAGTTGCTAAGAGTAAAATA+CGG + chr3_1:2694181-2694200 Msa0344150:CDS 30.0%
AGTTGCTAAGAGTAAAATAC+GGG + chr3_1:2694182-2694201 Msa0344150:CDS 30.0%
! TGAAGTATTTCCCATACAAT+CGG - chr3_1:2694216-2694235 None:intergenic 30.0%
AATACTTCAAGAAGTTATGC+GGG + chr3_1:2694227-2694246 Msa0344150:CDS 30.0%
TTTACATCCATTAGTGTGTA+AGG + chr3_1:2694341-2694360 Msa0344150:CDS 30.0%
TTACATCCATTAGTGTGTAA+GGG + chr3_1:2694342-2694361 Msa0344150:CDS 30.0%
TTCCGCTAGTTAATACATAA+AGG - chr3_1:2694527-2694546 None:intergenic 30.0%
! GAAGTTCACTATGAATCTTT+TGG + chr3_1:2694777-2694796 Msa0344150:intron 30.0%
ATATACATTAGAACCACTGT+TGG + chr3_1:2694864-2694883 Msa0344150:intron 30.0%
AAAAGAAATATGACCAACAG+TGG - chr3_1:2694880-2694899 None:intergenic 30.0%
GAAATTGAAGAAGCTATACA+AGG + chr3_1:2694906-2694925 Msa0344150:intron 30.0%
GTTATTGTGAAAGACTAGAT+TGG - chr3_1:2695162-2695181 None:intergenic 30.0%
TCTGCTAATAAGTCGTTTAA+TGG - chr3_1:2695201-2695220 None:intergenic 30.0%
AGCAGATTAATAGACCATTT+CGG + chr3_1:2695215-2695234 Msa0344150:CDS 30.0%
ATTAATAGACCATTTCGGAA+TGG + chr3_1:2695220-2695239 Msa0344150:CDS 30.0%
ACTGCTACATCTATTTCATT+AGG + chr3_1:2695296-2695315 Msa0344150:CDS 30.0%
! TAACAATACCTTCTAAAGGA+TGG + chr3_1:2695333-2695352 Msa0344150:CDS 30.0%
CATACCATATTTCAATGGAT+TGG - chr3_1:2695442-2695461 None:intergenic 30.0%
TGTAGCATACCATATTTCAA+TGG - chr3_1:2695447-2695466 None:intergenic 30.0%
!! TTATATGGACTGGATTAAAG+GGG - chr3_1:2695517-2695536 None:intergenic 30.0%
!! CATTATATGGACTGGATTAA+AGG - chr3_1:2695519-2695538 None:intergenic 30.0%
GAAAAAGACATTATATGGAC+TGG - chr3_1:2695527-2695546 None:intergenic 30.0%
! GTCCATATAATGTCTTTTTC+AGG + chr3_1:2695527-2695546 Msa0344150:CDS 30.0%
CTCCTGAAAAAGACATTATA+TGG - chr3_1:2695532-2695551 None:intergenic 30.0%
AAATCAATCATTTGTCCTTG+TGG - chr3_1:2695614-2695633 None:intergenic 30.0%
! TCTCGTAAATTGCTTTGAAT+GGG - chr3_1:2695638-2695657 None:intergenic 30.0%
! TTCTCGTAAATTGCTTTGAA+TGG - chr3_1:2695639-2695658 None:intergenic 30.0%
ATTCAAAGCAATTTACGAGA+AGG + chr3_1:2695638-2695657 Msa0344150:CDS 30.0%
ATTTCTGTAAATACCCGAAA+TGG + chr3_1:2695821-2695840 Msa0344150:CDS 30.0%
! TTTCTGGTATCATTCCATTT+CGG - chr3_1:2695838-2695857 None:intergenic 30.0%
GTAGCAGACGATATATATAT+CGG + chr3_1:2695890-2695909 Msa0344150:CDS 30.0%
!! ACGATATATATATCGGTTCA+CGG + chr3_1:2695897-2695916 Msa0344150:CDS 30.0%
GTCGTTAGAAATCAAGATAT+TGG + chr3_1:2695926-2695945 Msa0344150:CDS 30.0%
AAAGGGGTTCGAATAAATAT+TGG - chr3_1:2695992-2696011 None:intergenic 30.0%
TTGGATAGGATCCAATAAGA+TGG - chr3_1:2693315-2693334 None:intergenic 35.0%
GGATACTGTATTTCCAAGAT+TGG - chr3_1:2693411-2693430 None:intergenic 35.0%
CTTGAGTAGCAAAAAAGAGT+GGG - chr3_1:2693432-2693451 None:intergenic 35.0%
ACGAGAACAATTAGTTGATC+TGG + chr3_1:2693501-2693520 Msa0344150:CDS 35.0%
ATGGAAAGAATTAGGAGAAG+AGG + chr3_1:2693558-2693577 Msa0344150:CDS 35.0%
TGGAAAGAATTAGGAGAAGA+GGG + chr3_1:2693559-2693578 Msa0344150:CDS 35.0%
! CCATTCATTTTCATTGTCAG+TGG - chr3_1:2693587-2693606 None:intergenic 35.0%
CCACTGACAATGAAAATGAA+TGG + chr3_1:2693584-2693603 Msa0344150:CDS 35.0%
AGACATAAAACCATCCATTC+TGG - chr3_1:2693694-2693713 None:intergenic 35.0%
TGAATAATCGGTCTCAATTC+GGG - chr3_1:2693733-2693752 None:intergenic 35.0%
CCGATTATTCAAATAGATGG+AGG + chr3_1:2693742-2693761 Msa0344150:CDS 35.0%
! ATTATCAAGGAGTGTATCCA+CGG - chr3_1:2693905-2693924 None:intergenic 35.0%
AGATATAATTGAGGGCAAAG+AGG + chr3_1:2693981-2694000 Msa0344150:CDS 35.0%
GATATAATTGAGGGCAAAGA+GGG + chr3_1:2693982-2694001 Msa0344150:CDS 35.0%
!! GGAAAACGAGTTGATTATTC+GGG + chr3_1:2694027-2694046 Msa0344150:CDS 35.0%
!! GAAAACGAGTTGATTATTCG+GGG + chr3_1:2694028-2694047 Msa0344150:CDS 35.0%
CATCGATGTAATGAAAGTGA+TGG - chr3_1:2694075-2694094 None:intergenic 35.0%
TCACTTTCATTACATCGATG+TGG + chr3_1:2694075-2694094 Msa0344150:CDS 35.0%
!! ATAGCTCTATTGCTATTTCG+CGG - chr3_1:2694107-2694126 None:intergenic 35.0%
GGAAAAAGAACCGATTGTAT+GGG + chr3_1:2694203-2694222 Msa0344150:CDS 35.0%
ATACTTCAAGAAGTTATGCG+GGG + chr3_1:2694228-2694247 Msa0344150:CDS 35.0%
TTGAATCCCTTACACACTAA+TGG - chr3_1:2694351-2694370 None:intergenic 35.0%
GATTCAATGCAGACTTTGAT+GGG + chr3_1:2694364-2694383 Msa0344150:CDS 35.0%
ATTCAATGCAGACTTTGATG+GGG + chr3_1:2694365-2694384 Msa0344150:CDS 35.0%
TGTTCATGTGCCTTTATCTT+TGG + chr3_1:2694398-2694417 Msa0344150:CDS 35.0%
!! AAGCATATCTTGAGTTGGTA+CGG - chr3_1:2694499-2694518 None:intergenic 35.0%
CCTATAAGCATATCTTGAGT+TGG - chr3_1:2694504-2694523 None:intergenic 35.0%
CCAACTCAAGATATGCTTAT+AGG + chr3_1:2694501-2694520 Msa0344150:CDS 35.0%
GGCCTTTATGTATTAACTAG+CGG + chr3_1:2694522-2694541 Msa0344150:CDS 35.0%
TGCAATTCCTATGATGCAAT+TGG + chr3_1:2694660-2694679 Msa0344150:intron 35.0%
ATAAGCTCCAATTGCATCAT+AGG - chr3_1:2694670-2694689 None:intergenic 35.0%
GATTCATAGTGAACTTCGAT+AGG - chr3_1:2694774-2694793 None:intergenic 35.0%
! TTTTCTCGAGCCTATTCATA+TGG + chr3_1:2694930-2694949 Msa0344150:intron 35.0%
TATGATACTGGCGTAAATTC+AGG + chr3_1:2695005-2695024 Msa0344150:intron 35.0%
GTCTTTCACAATAACGTGAT+AGG + chr3_1:2695167-2695186 Msa0344150:CDS 35.0%
TTTCACAATAACGTGATAGG+TGG + chr3_1:2695170-2695189 Msa0344150:CDS 35.0%
ATGTATATGCCATTCCGAAA+TGG - chr3_1:2695232-2695251 None:intergenic 35.0%
TGGATCAAGTAAAGACTCTA+GGG + chr3_1:2695261-2695280 Msa0344150:CDS 35.0%
!! AACTTTGTTGTTCAGCATCT+TGG - chr3_1:2695364-2695383 None:intergenic 35.0%
TACGCCAATCCATTGAAATA+TGG + chr3_1:2695435-2695454 Msa0344150:CDS 35.0%
TTCTGGTATCATTCCATTTC+GGG - chr3_1:2695837-2695856 None:intergenic 35.0%
GGCCTAGCAAACGAAAAATT+TGG - chr3_1:2693334-2693353 None:intergenic 40.0%
CCTCGTAATCGTAAGAAAGT+AGG - chr3_1:2693370-2693389 None:intergenic 40.0%
CCTACTTTCTTACGATTACG+AGG + chr3_1:2693367-2693386 Msa0344150:CDS 40.0%
CCTTGAGTAGCAAAAAAGAG+TGG - chr3_1:2693433-2693452 None:intergenic 40.0%
!!! CCACTCTTTTTTGCTACTCA+AGG + chr3_1:2693430-2693449 Msa0344150:CDS 40.0%
!! AGAGAAATTTCTAGTGGAGC+AGG + chr3_1:2693472-2693491 Msa0344150:CDS 40.0%
! TGGATTCTTCGTTGGTAGAA+TGG + chr3_1:2693539-2693558 Msa0344150:CDS 40.0%
GAATGGGAAGATCGAAAAGT+AGG + chr3_1:2693601-2693620 Msa0344150:CDS 40.0%
!!! GAATTTTTTGGTTCGACGCA+TGG + chr3_1:2693633-2693652 Msa0344150:CDS 40.0%
TGGAGGGAAACTAATGAGTT+CGG + chr3_1:2693759-2693778 Msa0344150:CDS 40.0%
ACAACAAGTAGATCTACACC+AGG + chr3_1:2693841-2693860 Msa0344150:CDS 40.0%
CAACAAGTAGATCTACACCA+GGG + chr3_1:2693842-2693861 Msa0344150:CDS 40.0%
AACAAGTAGATCTACACCAG+GGG + chr3_1:2693843-2693862 Msa0344150:CDS 40.0%
TGACACATTACTAATTCCCC+TGG - chr3_1:2693862-2693881 None:intergenic 40.0%
AAAATTGGTACAAGAAGCCG+TGG + chr3_1:2693885-2693904 Msa0344150:CDS 40.0%
GTGGATACACTCCTTGATAA+TGG + chr3_1:2693904-2693923 Msa0344150:CDS 40.0%
TTATTATGACCGTCCCTCAT+TGG - chr3_1:2693943-2693962 None:intergenic 40.0%
!! TAGCTCTATTGCTATTTCGC+GGG - chr3_1:2694106-2694125 None:intergenic 40.0%
GGGAAAAAGAACCGATTGTA+TGG + chr3_1:2694202-2694221 Msa0344150:CDS 40.0%
TACTTCAAGAAGTTATGCGG+GGG + chr3_1:2694229-2694248 Msa0344150:CDS 40.0%
ATGCCCAATCTATGCAAAGT+AGG - chr3_1:2694279-2694298 None:intergenic 40.0%
TTTGCATAGATTGGGCATAC+AGG + chr3_1:2694281-2694300 Msa0344150:CDS 40.0%
GCACGTCCTTCTACTAAAAT+AGG - chr3_1:2694315-2694334 None:intergenic 40.0%
GGATTCAATGCAGACTTTGA+TGG + chr3_1:2694363-2694382 Msa0344150:CDS 40.0%
AGACTTTGATGGGGATCAAA+TGG + chr3_1:2694374-2694393 Msa0344150:CDS 40.0%
TCATGTGCCTTTATCTTTGG+AGG + chr3_1:2694401-2694420 Msa0344150:CDS 40.0%
TCATACAAACCTCTTGTCTC+CGG + chr3_1:2694455-2694474 Msa0344150:CDS 40.0%
!! TCTTGAGTTGGTACGGAAAT+GGG - chr3_1:2694492-2694511 None:intergenic 40.0%
!! ATCTTGAGTTGGTACGGAAA+TGG - chr3_1:2694493-2694512 None:intergenic 40.0%
!! GTTAGTGTTGATATCCAGCT+AGG + chr3_1:2694971-2694990 Msa0344150:intron 40.0%
ATATTCCACTCAGTGGGATT+CGG - chr3_1:2695116-2695135 None:intergenic 40.0%
!! GTGGAATATGGAGGTACTTA+TGG + chr3_1:2695127-2695146 Msa0344150:intron 40.0%
CTAGAGTCTTTACTTGATCC+AGG - chr3_1:2695262-2695281 None:intergenic 40.0%
CTGGATCAAGTAAAGACTCT+AGG + chr3_1:2695260-2695279 Msa0344150:CDS 40.0%
TAGATGTAGCAGTAGCTTGA+CGG - chr3_1:2695289-2695308 None:intergenic 40.0%
TCAGTATGGGAATGTACATG+CGG + chr3_1:2695403-2695422 Msa0344150:CDS 40.0%
GGGTCAGTCATCCTAAAATT+AGG - chr3_1:2695497-2695516 None:intergenic 40.0%
!!! ATGTCTTTTTCAGGAGCTAG+AGG + chr3_1:2695536-2695555 Msa0344150:CDS 40.0%
TCTCAAGTGCACCAATTAGT+CGG + chr3_1:2695566-2695585 Msa0344150:CDS 40.0%
ATCCTCTCATTCCGACTAAT+TGG - chr3_1:2695580-2695599 None:intergenic 40.0%
GGATTAATGTCAGATCCACA+AGG + chr3_1:2695596-2695615 Msa0344150:CDS 40.0%
ACGTATTCCTACAGGTAAAG+GGG - chr3_1:2696008-2696027 None:intergenic 40.0%
GACGTATTCCTACAGGTAAA+GGG - chr3_1:2696009-2696028 None:intergenic 40.0%
AGACGTATTCCTACAGGTAA+AGG - chr3_1:2696010-2696029 None:intergenic 40.0%
TTACCTGTAGGAATACGTCT+TGG + chr3_1:2696010-2696029 Msa0344150:CDS 40.0%
! CCTTTGAAAATCGGACGTGA+GGG - chr3_1:2693285-2693304 None:intergenic 45.0%
! CCTCACGTCCGATTTTCAAA+GGG + chr3_1:2693283-2693302 Msa0344150:CDS 45.0%
! CTCACGTCCGATTTTCAAAG+GGG + chr3_1:2693284-2693303 Msa0344150:CDS 45.0%
! TCACGTCCGATTTTCAAAGG+GGG + chr3_1:2693285-2693304 Msa0344150:CDS 45.0%
! GGATCTCCCCCTTTGAAAAT+CGG - chr3_1:2693294-2693313 None:intergenic 45.0%
AAGGGGGAGATCCATCTTAT+TGG + chr3_1:2693301-2693320 Msa0344150:CDS 45.0%
ATAATCGGTCTCAATTCGGG+AGG - chr3_1:2693730-2693749 None:intergenic 45.0%
!! CTCCTTGATAATGGAATCCG+CGG + chr3_1:2693913-2693932 Msa0344150:CDS 45.0%
AGATTTCGAGAGACTCTGCT+TGG + chr3_1:2694006-2694025 Msa0344150:CDS 45.0%
!! AGCTCTATTGCTATTTCGCG+GGG - chr3_1:2694105-2694124 None:intergenic 45.0%
AGCGCCTACTTTGCATAGAT+TGG + chr3_1:2694272-2694291 Msa0344150:CDS 45.0%
GCGCCTACTTTGCATAGATT+GGG + chr3_1:2694273-2694292 Msa0344150:CDS 45.0%
GCTTGAGCCTCCAAAGATAA+AGG - chr3_1:2694411-2694430 None:intergenic 45.0%
TTAACTAGCGGAAATCGTCG+AGG + chr3_1:2694534-2694553 Msa0344150:CDS 45.0%
!!! TCGATAGTCCTTTTTGGCTC+CGG + chr3_1:2694709-2694728 Msa0344150:intron 45.0%
! TGCATTGATCTATTCGCCAC+CGG - chr3_1:2694731-2694750 None:intergenic 45.0%
GAATCCCACTGAGTGGAATA+TGG + chr3_1:2695115-2695134 Msa0344150:intron 45.0%
ACCTCCATATTCCACTCAGT+GGG - chr3_1:2695122-2695141 None:intergenic 45.0%
TACCTCCATATTCCACTCAG+TGG - chr3_1:2695123-2695142 None:intergenic 45.0%
!! TGGAGGTACTTATGGCAGAA+CGG + chr3_1:2695135-2695154 Msa0344150:intron 45.0%
GGCATATACATCACACATCC+TGG + chr3_1:2695241-2695260 Msa0344150:CDS 45.0%
!! TGGACTAGCCATCCTTTAGA+AGG - chr3_1:2695344-2695363 None:intergenic 45.0%
CACCAATTAGTCGGAATGAG+AGG + chr3_1:2695575-2695594 Msa0344150:CDS 45.0%
AGTATCCACAACCCCTTTAC+GGG - chr3_1:2695702-2695721 None:intergenic 45.0%
CAGTATCCACAACCCCTTTA+CGG - chr3_1:2695703-2695722 None:intergenic 45.0%
!! TACACGTCGACTTGTTGAAG+TGG + chr3_1:2695751-2695770 Msa0344150:CDS 45.0%
GTTGTACGTCGAACAGATTG+CGG + chr3_1:2695785-2695804 Msa0344150:CDS 45.0%
ATTCGAACCCCTTTACCTGT+AGG + chr3_1:2695998-2696017 Msa0344150:CDS 45.0%
GATCCAAGACGTATTCCTAC+AGG - chr3_1:2696016-2696035 None:intergenic 45.0%
! TGGATCTGCCGATTGTGTTA+TGG + chr3_1:2696030-2696049 Msa0344150:CDS 45.0%
! GGATCTGCCGATTGTGTTAT+GGG + chr3_1:2696031-2696050 Msa0344150:CDS 45.0%
! CCCTCACGTCCGATTTTCAA+AGG + chr3_1:2693282-2693301 Msa0344150:CDS 50.0%
! CCCTTTGAAAATCGGACGTG+AGG - chr3_1:2693286-2693305 None:intergenic 50.0%
CTCAATTCGGGAGGAAGAAC+TGG - chr3_1:2693721-2693740 None:intergenic 50.0%
GTCCGCGGATTCCATTATCA+AGG - chr3_1:2693918-2693937 None:intergenic 50.0%
AATCCGCGGACAACCAATGA+GGG + chr3_1:2693927-2693946 Msa0344150:CDS 50.0%
GGGCGTTCTGTTATTGTCGT+AGG + chr3_1:2694048-2694067 Msa0344150:CDS 50.0%
GGCGCTCTATTCAGCAATAC+TGG - chr3_1:2694258-2694277 None:intergenic 50.0%
AACCTCTTGTCTCCGGCTAT+TGG + chr3_1:2694462-2694481 Msa0344150:CDS 50.0%
ACCTCTTGTCTCCGGCTATT+GGG + chr3_1:2694463-2694482 Msa0344150:CDS 50.0%
GAAATGGGATCCCCAATAGC+CGG - chr3_1:2694477-2694496 None:intergenic 50.0%
!!! ATAGTCCTTTTTGGCTCCGG+TGG + chr3_1:2694712-2694731 Msa0344150:intron 50.0%
TCCCACTGAGTGGAATATGG+AGG + chr3_1:2695118-2695137 Msa0344150:intron 50.0%
!! GGAGGTACTTATGGCAGAAC+GGG + chr3_1:2695136-2695155 Msa0344150:intron 50.0%
GCTGTACGAACATCAGATGC+TGG + chr3_1:2695722-2695741 Msa0344150:CDS 50.0%
ACAGATTGCGGTACGATTCG+CGG + chr3_1:2695797-2695816 Msa0344150:CDS 50.0%
! TCTGCCGATTGTGTTATGGG+CGG + chr3_1:2696034-2696053 Msa0344150:CDS 50.0%
GACTCCGCCCATAACACAAT+CGG - chr3_1:2696041-2696060 None:intergenic 50.0%
TATGGGCGGAGTCCTATTCA+TGG + chr3_1:2696048-2696067 Msa0344150:CDS 50.0%
ATGGGCGGAGTCCTATTCAT+GGG + chr3_1:2696049-2696068 Msa0344150:CDS 50.0%
GAATCCGCGGACAACCAATG+AGG + chr3_1:2693926-2693945 Msa0344150:CDS 55.0%
CCTCTTGTCTCCGGCTATTG+GGG + chr3_1:2694464-2694483 Msa0344150:CDS 55.0%
ATTCGCCACCGGAGCCAAAA+AGG - chr3_1:2694720-2694739 None:intergenic 55.0%
TCGAACCGAATCCCACTGAG+TGG + chr3_1:2695108-2695127 Msa0344150:intron 55.0%
TCTTGCTACGGAGCCCGTAA+AGG + chr3_1:2695686-2695705 Msa0344150:CDS 55.0%
CTTGCTACGGAGCCCGTAAA+GGG + chr3_1:2695687-2695706 Msa0344150:CDS 55.0%
TTGCTACGGAGCCCGTAAAG+GGG + chr3_1:2695688-2695707 Msa0344150:CDS 55.0%
CAGATTGCGGTACGATTCGC+GGG + chr3_1:2695798-2695817 Msa0344150:CDS 55.0%
TGGGCGGAGTCCTATTCATG+GGG + chr3_1:2696050-2696069 Msa0344150:CDS 55.0%
GAGTCCTATTCATGGGGACC+TGG + chr3_1:2696056-2696075 Msa0344150:CDS 55.0%
! CGTCCCTCATTGGTTGTCCG+CGG - chr3_1:2693933-2693952 None:intergenic 60.0%
CGCGGACAACCAATGAGGGA+CGG + chr3_1:2693931-2693950 Msa0344150:CDS 60.0%
CCCCAATAGCCGGAGACAAG+AGG - chr3_1:2694467-2694486 None:intergenic 60.0%
CGGAGCCCGTAAAGGGGTTG+TGG + chr3_1:2695694-2695713 Msa0344150:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 2693271 2696081 2693271 ID=Msa0344150;Name=Msa0344150
chr3_1 mRNA 2693271 2696081 2693271 ID=Msa0344150-mRNA-1;Parent=Msa0344150;Name=Msa0344150-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|2|0|737
chr3_1 exon 2693271 2694555 2693271 ID=Msa0344150-mRNA-1:exon:840;Parent=Msa0344150-mRNA-1
chr3_1 exon 2695153 2696081 2695153 ID=Msa0344150-mRNA-1:exon:841;Parent=Msa0344150-mRNA-1
chr3_1 CDS 2693271 2694555 2693271 ID=Msa0344150-mRNA-1:cds;Parent=Msa0344150-mRNA-1
chr3_1 CDS 2695153 2696081 2695153 ID=Msa0344150-mRNA-1:cds;Parent=Msa0344150-mRNA-1
Gene Sequence

>Msa0344150

ATGAGAGGAAACCCTCACGTCCGATTTTCAAAGGGGGAGATCCATCTTATTGGATCCTATCCAAATTTTTCGTTTGCTAGGCCCGTAGTTAAAAAACCTACTTTCTTACGATTACGAGGTTCATTCGAATATGAAATCCAATCTTGGAAATACAGTATCCCACTCTTTTTTGCTACTCAAGGTTTCGATACATTTCGAAATAGAGAAATTTCTAGTGGAGCAGGTGCTATACGAGAACAATTAGTTGATCTGGATTTAAGAATTATTATGGATTCTTCGTTGGTAGAATGGAAAGAATTAGGAGAAGAGGGATCCACTGACAATGAAAATGAATGGGAAGATCGAAAAGTAGGAAGAAGAAAGAATTTTTTGGTTCGACGCATGGAATTAGCTAAGCACTTTATCCGAACAAATATAGAACCAGAATGGATGGTTTTATGTCTCTTACCAGTTCTTCCTCCCGAATTGAGACCGATTATTCAAATAGATGGAGGGAAACTAATGAGTTCGGATATTAATGAACTCTATAGAAGAGTTATCTATCGGAACAATACTCTTATTGACCTATTAACAACAAGTAGATCTACACCAGGGGAATTAGTAATGTGTCAAGAAAAATTGGTACAAGAAGCCGTGGATACACTCCTTGATAATGGAATCCGCGGACAACCAATGAGGGACGGTCATAATAAAGTTTACAAATCGTTTTCAGATATAATTGAGGGCAAAGAGGGAAGATTTCGAGAGACTCTGCTTGGAAAACGAGTTGATTATTCGGGGCGTTCTGTTATTGTCGTAGGTCCATCACTTTCATTACATCGATGTGGATTGCCCCGCGAAATAGCAATAGAGCTATTTCAGACATTTCTAATTCGTGGTTTAATTCGAAAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATACGGGAAAAAGAACCGATTGTATGGGAAATACTTCAAGAAGTTATGCGGGGGCATCCAGTATTGCTGAATAGAGCGCCTACTTTGCATAGATTGGGCATACAGGCATTTCAACCTATTTTAGTAGAAGGACGTGCTATTTGTTTACATCCATTAGTGTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTGCCTTTATCTTTGGAGGCTCAAGCAGAAGCTCGTTTACTTATGTTTTCTCATACAAACCTCTTGTCTCCGGCTATTGGGGATCCCATTTCCGTACCAACTCAAGATATGCTTATAGGCCTTTATGTATTAACTAGCGGAAATCGTCGAGAACGGGCCAATCTAGTCTTTCACAATAACGTGATAGGTGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGACCATTTCGGAATGGCATATACATCACACATCCTGGATCAAGTAAAGACTCTAGGGTTCCGTCAAGCTACTGCTACATCTATTTCATTAGGAATTGATGATCTTTTAACAATACCTTCTAAAGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTCTATTTTGGAAAAACATAATCAGTATGGGAATGTACATGCGGTAGAAAAATTACGCCAATCCATTGAAATATGGTATGCTACAAGCGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCCTTTAATCCAGTCCATATAATGTCTTTTTCAGGAGCTAGAGGAAATGCATCTCAAGTGCACCAATTAGTCGGAATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGAGAAGGACTGTCTTTAACAGAATATATAATTTCTTGCTACGGAGCCCGTAAAGGGGTTGTGGATACTGCTGTACGAACATCAGATGCTGGATATCTTACACGTCGACTTGTTGAAGTGGTTCAACACATTGTTGTACGTCGAACAGATTGCGGTACGATTCGCGGGATTTCTGTAAATACCCGAAATGGAATGATACCAGAAAGAATTTTGATACAAACATTAATTGGTCGTGTAGTAGCAGACGATATATATATCGGTTCACGGTGCATTGTCGTTAGAAATCAAGATATTGGAATTGGACTTATCAATCGATTCATAACTTTTCAAACACAACCAATATTTATTCGAACCCCTTTACCTGTAGGAATACGTCTTGGATCTGCCGATTGTGTTATGGGCGGAGTCCTATTCATGGGGACCTGGTAG

Protein sequence

>Msa0344150

MRGNPHVRFSKGEIHLIGSYPNFSFARPVVKKPTFLRLRGSFEYEIQSWKYSIPLFFATQGFDTFRNREISSGAGAIREQLVDLDLRIIMDSSLVEWKELGEEGSTDNENEWEDRKVGRRKNFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDIIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRKHFASNIGVAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGIDDLLTIPSKGWLVQDAEQQSSILEKHNQYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTRNGMIPERILIQTLIGRVVADDIYIGSRCIVVRNQDIGIGLINRFITFQTQPIFIRTPLPVGIRLGSADCVMGGVLFMGTW*