Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0344150 | KAH0648988.1 | 91.141 | 666 | 46 | 2 | 61 | 715 | 69 | 732 | 0.0 | 1240 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0344150 | sp|Q8HVY4|RPOC1_SOYBN | 96.577 | 409 | 14 | 0 | 20 | 428 | 142 | 550 | 0.0 | 817 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0344150 | A0A6A5L4T6 | 89.088 | 669 | 47 | 1 | 73 | 715 | 57 | 725 | 0.0 | 1206 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0095210 | Msa0344150 | 0.807176 | 5.745420e-50 | -8.615850e-47 |
Msa0139800 | Msa0344150 | 0.830657 | 2.595567e-55 | -8.615850e-47 |
Msa0139810 | Msa0344150 | 0.845661 | 3.532573e-59 | -8.615850e-47 |
Msa0221840 | Msa0344150 | 0.813172 | 2.927577e-51 | -8.615850e-47 |
Msa0268170 | Msa0344150 | 0.824429 | 8.112863e-54 | -8.615850e-47 |
Msa0268190 | Msa0344150 | 0.817964 | 2.508619e-52 | -8.615850e-47 |
Msa0268370 | Msa0344150 | 0.806767 | 7.009525e-50 | -8.615850e-47 |
Msa0268390 | Msa0344150 | 0.827704 | 1.350421e-54 | -8.615850e-47 |
Msa0268410 | Msa0344150 | 0.815969 | 7.040126e-52 | -8.615850e-47 |
Msa0268430 | Msa0344150 | 0.821391 | 4.138719e-53 | -8.615850e-47 |
Msa0268530 | Msa0344150 | 0.816244 | 6.112104e-52 | -8.615850e-47 |
Msa0268550 | Msa0344150 | 0.808159 | 3.552358e-50 | -8.615850e-47 |
Msa0268580 | Msa0344150 | 0.806081 | 9.783076e-50 | -8.615850e-47 |
Msa0268610 | Msa0344150 | 0.844203 | 8.743471e-59 | -8.615850e-47 |
Msa0268720 | Msa0344150 | 0.813337 | 2.694141e-51 | -8.615850e-47 |
Msa0268740 | Msa0344150 | 0.802396 | 5.722293e-49 | -8.615850e-47 |
Msa0268780 | Msa0344150 | 0.836930 | 7.011224e-57 | -8.615850e-47 |
Msa0268830 | Msa0344150 | 0.810723 | 1.000123e-50 | -8.615850e-47 |
Msa0268840 | Msa0344150 | 0.813527 | 2.447407e-51 | -8.615850e-47 |
Msa0268860 | Msa0344150 | 0.811655 | 6.279166e-51 | -8.615850e-47 |
Msa0268920 | Msa0344150 | 0.810408 | 1.169692e-50 | -8.615850e-47 |
Msa0268940 | Msa0344150 | 0.813580 | 2.381912e-51 | -8.615850e-47 |
Msa0268960 | Msa0344150 | 0.802341 | 5.874458e-49 | -8.615850e-47 |
Msa0268990 | Msa0344150 | 0.860607 | 1.835684e-63 | -8.615850e-47 |
Msa0269040 | Msa0344150 | 0.805585 | 1.243361e-49 | -8.615850e-47 |
Msa0269050 | Msa0344150 | 0.819753 | 9.843366e-53 | -8.615850e-47 |
Msa0269070 | Msa0344150 | 0.808963 | 2.391566e-50 | -8.615850e-47 |
Msa0344150 | Msa0344190 | 0.811226 | 7.782865e-51 | -8.615850e-47 |
Msa0344150 | Msa0344280 | 0.800717 | 1.264380e-48 | -8.615850e-47 |
Msa0344150 | Msa0484000 | 0.817363 | 3.429014e-52 | -8.615850e-47 |
Msa0344150 | Msa0582500 | 0.821526 | 3.853990e-53 | -8.615850e-47 |
Msa0344150 | Msa0582510 | 0.809985 | 1.443013e-50 | -8.615850e-47 |
Msa0344150 | Msa0582520 | 0.817918 | 2.569588e-52 | -8.615850e-47 |
Msa0344150 | Msa0582540 | 0.811612 | 6.415674e-51 | -8.615850e-47 |
Msa0344150 | Msa0582610 | 0.825664 | 4.143611e-54 | -8.615850e-47 |
Msa0344150 | Msa0582630 | 0.822597 | 2.175969e-53 | -8.615850e-47 |
Msa0344150 | Msa0582670 | 0.811467 | 6.899492e-51 | -8.615850e-47 |
Msa0344150 | Msa0582680 | 0.829786 | 4.235627e-55 | -8.615850e-47 |
Msa0344150 | Msa0582690 | 0.811088 | 8.336898e-51 | -8.615850e-47 |
Msa0344150 | Msa0582700 | 0.817630 | 2.984864e-52 | -8.615850e-47 |
Msa0344150 | Msa0582770 | 0.802897 | 4.511880e-49 | -8.615850e-47 |
Msa0344150 | Msa0582790 | 0.812772 | 3.582807e-51 | -8.615850e-47 |
Msa0344150 | Msa0582800 | 0.829377 | 5.326813e-55 | -8.615850e-47 |
Msa0344150 | Msa0582810 | 0.803458 | 3.453680e-49 | -8.615850e-47 |
Msa0344150 | Msa0582820 | 0.801733 | 7.832445e-49 | -8.615850e-47 |
Msa0344150 | Msa0582840 | 0.819720 | 1.001434e-52 | -8.615850e-47 |
Msa0344150 | Msa0924880 | 0.812143 | 4.918151e-51 | -8.615850e-47 |
Msa0344150 | Msa0924990 | 0.803841 | 2.874812e-49 | -8.615850e-47 |
Msa0344150 | Msa0925040 | 0.812520 | 4.068526e-51 | -8.615850e-47 |
Msa0344150 | Msa0931070 | 0.807533 | 4.824866e-50 | -8.615850e-47 |
Msa0344150 | Msa0931080 | 0.813285 | 2.764935e-51 | -8.615850e-47 |
Msa0344150 | Msa0931110 | 0.823665 | 1.225425e-53 | -8.615850e-47 |
Msa0344150 | Msa0931140 | 0.831002 | 2.136419e-55 | -8.615850e-47 |
Msa0344150 | Msa0931160 | 0.811756 | 5.971001e-51 | -8.615850e-47 |
Msa0344150 | Msa0931190 | 0.814226 | 1.716200e-51 | -8.615850e-47 |
Msa0344150 | Msa0931230 | 0.821857 | 3.229684e-53 | -8.615850e-47 |
Msa0344150 | Msa0931250 | 0.827045 | 1.943114e-54 | -8.615850e-47 |
Msa0344150 | Msa0931260 | 0.812723 | 3.672327e-51 | -8.615850e-47 |
Msa0344150 | Msa0931270 | 0.809294 | 2.031279e-50 | -8.615850e-47 |
Msa0344150 | Msa0983700 | 0.824916 | 6.227878e-54 | -8.615850e-47 |
Msa0344150 | Msa0983720 | 0.803271 | 3.774192e-49 | -8.615850e-47 |
Msa0344150 | Msa1086070 | 0.812204 | 4.768215e-51 | -8.615850e-47 |
Msa0344150 | Msa1086110 | 0.808698 | 2.725555e-50 | -8.615850e-47 |
Msa0344150 | Msa1086140 | 0.812765 | 3.595964e-51 | -8.615850e-47 |
Msa0344150 | Msa1086150 | 0.822906 | 1.843325e-53 | -8.615850e-47 |
Msa0344150 | Msa1086180 | 0.803584 | 3.251525e-49 | -8.615850e-47 |
Msa0344150 | Msa1086200 | 0.805501 | 1.294618e-49 | -8.615850e-47 |
Msa0344150 | Msa1086210 | 0.807380 | 5.199896e-50 | -8.615850e-47 |
Msa0344150 | Msa1086250 | 0.854592 | 1.111125e-61 | -8.615850e-47 |
Msa0344150 | Msa1086280 | 0.820323 | 7.290242e-53 | -8.615850e-47 |
Msa0344150 | Msa1086300 | 0.802483 | 5.490445e-49 | -8.615850e-47 |
Msa0344150 | Msa1086380 | 0.818801 | 1.621219e-52 | -8.615850e-47 |
Msa0344150 | Msa1086450 | 0.841123 | 5.751133e-58 | -8.615850e-47 |
Msa0344150 | Msa1086470 | 0.828106 | 1.080915e-54 | -8.615850e-47 |
Msa0344150 | Msa1086660 | 0.802436 | 5.616286e-49 | -8.615850e-47 |
Msa0344150 | Msa1086860 | 0.821050 | 4.959951e-53 | -8.615850e-47 |
Msa0344150 | Msa1086880 | 0.818507 | 1.890760e-52 | -8.615850e-47 |
Msa0344150 | Msa1086900 | 0.812167 | 4.859264e-51 | -8.615850e-47 |
Msa0344150 | Msa1086910 | 0.805997 | 1.018759e-49 | -8.615850e-47 |
Msa0344150 | Msa1143120 | 0.814549 | 1.456228e-51 | -8.615850e-47 |
Msa0344150 | Msa1143170 | 0.807542 | 4.804868e-50 | -8.615850e-47 |
Msa0344150 | Msa1143190 | 0.814869 | 1.236985e-51 | -8.615850e-47 |
Msa0344150 | Msa1305090 | 0.806523 | 7.895031e-50 | -8.615850e-47 |
Msa0344150 | Msa1354880 | 0.805058 | 1.603115e-49 | -8.615850e-47 |
Msa0344150 | Msa1354940 | 0.824455 | 7.999105e-54 | -8.615850e-47 |
Msa0344150 | Msa1355050 | 0.803355 | 3.626745e-49 | -8.615850e-47 |
Msa0344150 | Msa1355070 | 0.807604 | 4.660087e-50 | -8.615850e-47 |
Msa0344150 | Msa1366050 | 0.801692 | 7.987019e-49 | -8.615850e-47 |
Msa0344150 | Msa1380570 | 0.805807 | 1.116721e-49 | -8.615850e-47 |
Msa0344150 | Msa1380590 | 0.803820 | 2.904104e-49 | -8.615850e-47 |
Msa0344150 | Msa1380610 | 0.815077 | 1.111798e-51 | -8.615850e-47 |
Msa0344150 | Msa1380620 | 0.841019 | 6.123015e-58 | -8.615850e-47 |
Msa0344150 | Msa1380680 | 0.802534 | 5.360977e-49 | -8.615850e-47 |
Msa0344150 | Msa1380690 | 0.843512 | 1.338506e-58 | -8.615850e-47 |
Msa0344150 | Msa1394060 | 0.818635 | 1.769009e-52 | -8.615850e-47 |
Msa0344150 | Msa1394150 | 0.802683 | 4.994523e-49 | -8.615850e-47 |
Msa0344150 | Msa1394230 | 0.815646 | 8.311711e-52 | -8.615850e-47 |
Msa0344150 | Msa1394250 | 0.827569 | 1.455215e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0344150 | MtrunA17_Chr3g0108441 | 98.837 | 430 | 3 | 1 | 1 | 428 | 1 | 430 | 0.0 | 869 |
Msa0344150 | MtrunA17_Chr3g0108491 | 98.837 | 430 | 3 | 1 | 1 | 428 | 1 | 430 | 0.0 | 868 |
Msa0344150 | MtrunA17_CPg0493021 | 98.837 | 430 | 3 | 1 | 1 | 428 | 1 | 430 | 0.0 | 868 |
Msa0344150 | MtrunA17_Chr4g0016661 | 98.837 | 430 | 3 | 1 | 1 | 428 | 1 | 430 | 0.0 | 868 |
Msa0344150 | MtrunA17_CPg0493001 | 99.303 | 287 | 2 | 0 | 429 | 715 | 7 | 293 | 0.0 | 585 |
Msa0344150 | MtrunA17_Chr4g0016671 | 99.303 | 287 | 2 | 0 | 429 | 715 | 7 | 293 | 0.0 | 585 |
Msa0344150 | MtrunA17_Chr8g0342181 | 60.767 | 339 | 58 | 4 | 90 | 428 | 1 | 264 | 1.43e-120 | 363 |
Msa0344150 | MtrunA17_Chr4g0015581 | 99.429 | 175 | 1 | 0 | 541 | 715 | 1 | 175 | 3.56e-117 | 357 |
Msa0344150 | MtrunA17_Chr4g0015551 | 75.000 | 212 | 8 | 1 | 116 | 327 | 5 | 171 | 1.13e-97 | 299 |
Msa0344150 | MtrunA17_Chr3g0096371 | 95.652 | 115 | 5 | 0 | 168 | 282 | 1 | 115 | 1.50e-70 | 226 |
Msa0344150 | MtrunA17_Chr4g0002751 | 82.796 | 93 | 16 | 0 | 128 | 220 | 1 | 93 | 4.23e-44 | 153 |
Msa0344150 | MtrunA17_Chr2g0318321 | 95.652 | 69 | 3 | 0 | 429 | 497 | 26 | 94 | 6.20e-39 | 139 |
Msa0344150 | MtrunA17_Chr4g0030401 | 28.247 | 308 | 191 | 6 | 140 | 423 | 248 | 549 | 1.09e-29 | 126 |
Msa0344150 | MtrunA17_Chr4g0030391 | 29.126 | 309 | 187 | 6 | 140 | 423 | 247 | 548 | 1.30e-29 | 126 |
Msa0344150 | MtrunA17_Chr4g0015571 | 100.000 | 44 | 0 | 0 | 429 | 472 | 7 | 50 | 2.73e-23 | 93.6 |
Msa0344150 | MtrunA17_Chr5g0406121 | 28.526 | 312 | 190 | 6 | 141 | 423 | 241 | 548 | 4.28e-23 | 105 |
Msa0344150 | MtrunA17_Chr4g0044991 | 25.949 | 316 | 183 | 7 | 151 | 423 | 317 | 624 | 6.97e-20 | 95.5 |
Msa0344150 | MtrunA17_Chr4g0002761 | 65.455 | 55 | 19 | 0 | 375 | 429 | 1 | 55 | 1.63e-15 | 72.0 |
Msa0344150 | MtrunA17_Chr8g0353071 | 28.053 | 303 | 186 | 10 | 145 | 422 | 211 | 506 | 2.30e-12 | 71.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0344150 | ATCG00180.1 | 92.176 | 409 | 30 | 1 | 20 | 428 | 142 | 548 | 0.0 | 780 |
Msa0344150 | ATCG00170.1 | 91.003 | 289 | 24 | 1 | 429 | 715 | 3 | 291 | 1.79e-174 | 537 |
Msa0344150 | AT5G60040.1 | 28.710 | 310 | 188 | 5 | 141 | 423 | 250 | 553 | 1.72e-28 | 123 |
Msa0344150 | AT5G60040.2 | 28.710 | 310 | 188 | 5 | 141 | 423 | 260 | 563 | 2.24e-28 | 122 |
Msa0344150 | AT4G35800.2 | 28.710 | 310 | 192 | 5 | 141 | 423 | 242 | 549 | 3.54e-24 | 109 |
Msa0344150 | AT4G35800.1 | 28.710 | 310 | 192 | 5 | 141 | 423 | 242 | 549 | 3.54e-24 | 109 |
Msa0344150 | AT3G57660.2 | 24.806 | 387 | 215 | 12 | 151 | 491 | 335 | 691 | 6.48e-18 | 89.4 |
Msa0344150 | AT3G57660.1 | 24.806 | 387 | 215 | 12 | 151 | 491 | 348 | 704 | 7.38e-18 | 89.4 |
Msa0344150 | AT1G63020.1 | 23.978 | 367 | 238 | 10 | 79 | 422 | 152 | 500 | 2.21e-14 | 77.8 |
Msa0344150 | AT1G63020.2 | 23.978 | 367 | 238 | 10 | 79 | 422 | 152 | 500 | 2.21e-14 | 77.8 |
Msa0344150 | AT1G63020.3 | 23.913 | 368 | 239 | 10 | 79 | 423 | 152 | 501 | 2.59e-14 | 77.8 |
Msa0344150 | AT1G63020.4 | 23.978 | 367 | 238 | 10 | 79 | 422 | 152 | 500 | 2.76e-14 | 77.4 |
Msa0344150 | AT1G63020.5 | 27.461 | 193 | 124 | 3 | 247 | 423 | 1 | 193 | 4.87e-13 | 73.6 |
Msa0344150 | AT2G40030.2 | 29.016 | 193 | 121 | 3 | 246 | 422 | 310 | 502 | 3.40e-11 | 67.8 |
Msa0344150 | AT2G40030.1 | 29.016 | 193 | 121 | 3 | 246 | 422 | 310 | 502 | 3.44e-11 | 67.8 |
Find 169 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTTGTATCAAAATTCTTTC+TGG | 0.155430 | 3_1:-2695851 | None:intergenic |
TTCTGGTATCATTCCATTTC+GGG | 0.158141 | 3_1:-2695834 | None:intergenic |
TGAACAACAAAGTTCTATTT+TGG | 0.177929 | 3_1:+2695370 | Msa0344150:CDS |
TCTGGATTTAAGAATTATTA+TGG | 0.190370 | 3_1:+2693519 | Msa0344150:CDS |
TCTGCTAATAAGTCGTTTAA+TGG | 0.223864 | 3_1:-2695198 | None:intergenic |
ACCTCTTGTCTCCGGCTATT+GGG | 0.225839 | 3_1:+2694463 | Msa0344150:CDS |
ATCCTCTCATTCCGACTAAT+TGG | 0.248879 | 3_1:-2695577 | None:intergenic |
TGTTCATGTGCCTTTATCTT+TGG | 0.264426 | 3_1:+2694398 | Msa0344150:CDS |
CCAACTCAAGATATGCTTAT+AGG | 0.271742 | 3_1:+2694501 | Msa0344150:CDS |
CATTATATGGACTGGATTAA+AGG | 0.289410 | 3_1:-2695516 | None:intergenic |
AACCTCTTGTCTCCGGCTAT+TGG | 0.290298 | 3_1:+2694462 | Msa0344150:CDS |
GCACGTCCTTCTACTAAAAT+AGG | 0.292699 | 3_1:-2694312 | None:intergenic |
GGATCTGCCGATTGTGTTAT+GGG | 0.297223 | 3_1:+2696031 | Msa0344150:CDS |
TTTCTGGTATCATTCCATTT+CGG | 0.299397 | 3_1:-2695835 | None:intergenic |
TAGATCTACTTGTTGTTAAT+AGG | 0.299908 | 3_1:-2693834 | None:intergenic |
TGGATCTGCCGATTGTGTTA+TGG | 0.301508 | 3_1:+2696030 | Msa0344150:CDS |
GGGTCAGTCATCCTAAAATT+AGG | 0.301712 | 3_1:-2695494 | None:intergenic |
AGCGCCTACTTTGCATAGAT+TGG | 0.308716 | 3_1:+2694272 | Msa0344150:CDS |
CCTCCATCTATTTGAATAAT+CGG | 0.310599 | 3_1:-2693742 | None:intergenic |
TTGGTAGAATGGAAAGAATT+AGG | 0.313946 | 3_1:+2693550 | Msa0344150:CDS |
TTCTCGTAAATTGCTTTGAA+TGG | 0.322270 | 3_1:-2695636 | None:intergenic |
TTTACATCCATTAGTGTGTA+AGG | 0.327520 | 3_1:+2694341 | Msa0344150:CDS |
CAGTATCCACAACCCCTTTA+CGG | 0.329838 | 3_1:-2695700 | None:intergenic |
AACTTTGTTGTTCAGCATCT+TGG | 0.334259 | 3_1:-2695361 | None:intergenic |
AGAAATCAAGATATTGGAAT+TGG | 0.334567 | 3_1:+2695932 | Msa0344150:CDS |
TACGCCAATCCATTGAAATA+TGG | 0.339395 | 3_1:+2695435 | Msa0344150:CDS |
TTGAATAATCGGTCTCAATT+CGG | 0.341142 | 3_1:-2693731 | None:intergenic |
GTCGTTAGAAATCAAGATAT+TGG | 0.341954 | 3_1:+2695926 | Msa0344150:CDS |
AAAGGGGTTCGAATAAATAT+TGG | 0.343905 | 3_1:-2695989 | None:intergenic |
GGAAAACGAGTTGATTATTC+GGG | 0.350240 | 3_1:+2694027 | Msa0344150:CDS |
AGACCGATTATTCAAATAGA+TGG | 0.352617 | 3_1:+2693739 | Msa0344150:CDS |
ACTGCTACATCTATTTCATT+AGG | 0.354727 | 3_1:+2695296 | Msa0344150:CDS |
TGGAAAACGAGTTGATTATT+CGG | 0.358566 | 3_1:+2694026 | Msa0344150:CDS |
ATCTTGAGTTGGTACGGAAA+TGG | 0.362284 | 3_1:-2694490 | None:intergenic |
GGATACTGTATTTCCAAGAT+TGG | 0.364284 | 3_1:-2693408 | None:intergenic |
TGAATAATCGGTCTCAATTC+GGG | 0.364643 | 3_1:-2693730 | None:intergenic |
ATTATATGGACTGGATTAAA+GGG | 0.370361 | 3_1:-2695515 | None:intergenic |
TGGACTAGCCATCCTTTAGA+AGG | 0.382153 | 3_1:-2695341 | None:intergenic |
TTCCGCTAGTTAATACATAA+AGG | 0.382446 | 3_1:-2694524 | None:intergenic |
TTGAATCCCTTACACACTAA+TGG | 0.385461 | 3_1:-2694348 | None:intergenic |
GTGGATACACTCCTTGATAA+TGG | 0.387696 | 3_1:+2693904 | Msa0344150:CDS |
ATTTCTGTAAATACCCGAAA+TGG | 0.389944 | 3_1:+2695821 | Msa0344150:CDS |
TTTCAGACATTTCTAATTCG+TGG | 0.395006 | 3_1:+2694126 | Msa0344150:CDS |
ACGAGAACAATTAGTTGATC+TGG | 0.400881 | 3_1:+2693501 | Msa0344150:CDS |
GGCGCTCTATTCAGCAATAC+TGG | 0.401200 | 3_1:-2694255 | None:intergenic |
AGTATCCACAACCCCTTTAC+GGG | 0.401249 | 3_1:-2695699 | None:intergenic |
AGACATAAAACCATCCATTC+TGG | 0.402557 | 3_1:-2693691 | None:intergenic |
TGGATTCTTCGTTGGTAGAA+TGG | 0.407733 | 3_1:+2693539 | Msa0344150:CDS |
GGATTCAATGCAGACTTTGA+TGG | 0.407959 | 3_1:+2694363 | Msa0344150:CDS |
TCATGTGCCTTTATCTTTGG+AGG | 0.409231 | 3_1:+2694401 | Msa0344150:CDS |
CTTGCTACGGAGCCCGTAAA+GGG | 0.410011 | 3_1:+2695687 | Msa0344150:CDS |
AGCAGATTAATAGACCATTT+CGG | 0.411046 | 3_1:+2695215 | Msa0344150:CDS |
GCTTGAGCCTCCAAAGATAA+AGG | 0.413525 | 3_1:-2694408 | None:intergenic |
TCGAATATGAAATCCAATCT+TGG | 0.418713 | 3_1:+2693395 | Msa0344150:CDS |
GACGTATTCCTACAGGTAAA+GGG | 0.421613 | 3_1:-2696006 | None:intergenic |
GATTCAATGCAGACTTTGAT+GGG | 0.425961 | 3_1:+2694364 | Msa0344150:CDS |
TCTTGAGTTGGTACGGAAAT+GGG | 0.426083 | 3_1:-2694489 | None:intergenic |
CTCAATTCGGGAGGAAGAAC+TGG | 0.430438 | 3_1:-2693718 | None:intergenic |
TCTCGTAAATTGCTTTGAAT+GGG | 0.433790 | 3_1:-2695635 | None:intergenic |
ATTCTGGTTCTATATTTGTT+CGG | 0.435196 | 3_1:-2693675 | None:intergenic |
TTATTATGACCGTCCCTCAT+TGG | 0.440271 | 3_1:-2693940 | None:intergenic |
TCTACCAGGTCCCCATGAAT+AGG | 0.440638 | 3_1:-2696060 | None:intergenic |
CATACCATATTTCAATGGAT+TGG | 0.443039 | 3_1:-2695439 | None:intergenic |
CAGATTGCGGTACGATTCGC+GGG | 0.446348 | 3_1:+2695798 | Msa0344150:CDS |
TTTGCATAGATTGGGCATAC+AGG | 0.446557 | 3_1:+2694281 | Msa0344150:CDS |
TGTAGCATACCATATTTCAA+TGG | 0.450731 | 3_1:-2695444 | None:intergenic |
CTGGATCAAGTAAAGACTCT+AGG | 0.462436 | 3_1:+2695260 | Msa0344150:CDS |
CACTGACAATGAAAATGAAT+GGG | 0.463118 | 3_1:+2693585 | Msa0344150:CDS |
CTAGAGTCTTTACTTGATCC+AGG | 0.463607 | 3_1:-2695259 | None:intergenic |
CCACTGACAATGAAAATGAA+TGG | 0.464389 | 3_1:+2693584 | Msa0344150:CDS |
AGACGTATTCCTACAGGTAA+AGG | 0.465006 | 3_1:-2696007 | None:intergenic |
TGGAAAGAATTAGGAGAAGA+GGG | 0.467304 | 3_1:+2693559 | Msa0344150:CDS |
GTAGCAGACGATATATATAT+CGG | 0.471989 | 3_1:+2695890 | Msa0344150:CDS |
GCGCCTACTTTGCATAGATT+GGG | 0.476543 | 3_1:+2694273 | Msa0344150:CDS |
TGAAGTATTTCCCATACAAT+CGG | 0.477354 | 3_1:-2694213 | None:intergenic |
CCTCTTGTCTCCGGCTATTG+GGG | 0.480180 | 3_1:+2694464 | Msa0344150:CDS |
GGGCGTTCTGTTATTGTCGT+AGG | 0.483193 | 3_1:+2694048 | Msa0344150:CDS |
AGAGAAATTTCTAGTGGAGC+AGG | 0.488408 | 3_1:+2693472 | Msa0344150:CDS |
GTCTTTCACAATAACGTGAT+AGG | 0.489141 | 3_1:+2695167 | Msa0344150:CDS |
GTTATTGTGAAAGACTAGAT+TGG | 0.489846 | 3_1:-2695159 | None:intergenic |
TCTTGCTACGGAGCCCGTAA+AGG | 0.490200 | 3_1:+2695686 | Msa0344150:CDS |
TGGAGGGAAACTAATGAGTT+CGG | 0.494350 | 3_1:+2693759 | Msa0344150:CDS |
GGCATATACATCACACATCC+TGG | 0.495134 | 3_1:+2695241 | Msa0344150:CDS |
TAACAATACCTTCTAAAGGA+TGG | 0.495965 | 3_1:+2695333 | Msa0344150:CDS |
CGAAATAGAGAAATTTCTAG+TGG | 0.496839 | 3_1:+2693466 | Msa0344150:CDS |
TAGCTCTATTGCTATTTCGC+GGG | 0.496998 | 3_1:-2694103 | None:intergenic |
AATTATTATGGATTCTTCGT+TGG | 0.499116 | 3_1:+2693531 | Msa0344150:CDS |
TCATACAAACCTCTTGTCTC+CGG | 0.506883 | 3_1:+2694455 | Msa0344150:CDS |
ATGGGCGGAGTCCTATTCAT+GGG | 0.508984 | 3_1:+2696049 | Msa0344150:CDS |
GAATGGGAAGATCGAAAAGT+AGG | 0.511851 | 3_1:+2693601 | Msa0344150:CDS |
GACTCCGCCCATAACACAAT+CGG | 0.512450 | 3_1:-2696038 | None:intergenic |
CCTCGTAATCGTAAGAAAGT+AGG | 0.512515 | 3_1:-2693367 | None:intergenic |
CGGAGCCCGTAAAGGGGTTG+TGG | 0.513039 | 3_1:+2695694 | Msa0344150:CDS |
AAATCAATCATTTGTCCTTG+TGG | 0.513235 | 3_1:-2695611 | None:intergenic |
ATGGAAAGAATTAGGAGAAG+AGG | 0.513927 | 3_1:+2693558 | Msa0344150:CDS |
ATAGCTCTATTGCTATTTCG+CGG | 0.516257 | 3_1:-2694104 | None:intergenic |
TAGATGTAGCAGTAGCTTGA+CGG | 0.516966 | 3_1:-2695286 | None:intergenic |
TATGGGCGGAGTCCTATTCA+TGG | 0.517790 | 3_1:+2696048 | Msa0344150:CDS |
GAGTTGCTAAGAGTAAAATA+CGG | 0.520079 | 3_1:+2694181 | Msa0344150:CDS |
AGATTTCGAGAGACTCTGCT+TGG | 0.523467 | 3_1:+2694006 | Msa0344150:CDS |
ATGTATATGCCATTCCGAAA+TGG | 0.525535 | 3_1:-2695229 | None:intergenic |
AGACTTTGATGGGGATCAAA+TGG | 0.531054 | 3_1:+2694374 | Msa0344150:CDS |
ACAGATTGCGGTACGATTCG+CGG | 0.531220 | 3_1:+2695797 | Msa0344150:CDS |
GTCCGCGGATTCCATTATCA+AGG | 0.532137 | 3_1:-2693915 | None:intergenic |
CCTATAAGCATATCTTGAGT+TGG | 0.532621 | 3_1:-2694501 | None:intergenic |
TTGGATAGGATCCAATAAGA+TGG | 0.534215 | 3_1:-2693312 | None:intergenic |
GAATATATAATTTCTTGCTA+CGG | 0.534554 | 3_1:+2695674 | Msa0344150:CDS |
CAGCTTCTCCCAATTCTACC+AGG | 0.535523 | 3_1:-2696074 | None:intergenic |
GATATAATTGAGGGCAAAGA+GGG | 0.535939 | 3_1:+2693982 | Msa0344150:CDS |
TGGATCAAGTAAAGACTCTA+GGG | 0.538268 | 3_1:+2695261 | Msa0344150:CDS |
AATACTTCAAGAAGTTATGC+GGG | 0.538847 | 3_1:+2694227 | Msa0344150:CDS |
AAGCATATCTTGAGTTGGTA+CGG | 0.543078 | 3_1:-2694496 | None:intergenic |
GATCCAAGACGTATTCCTAC+AGG | 0.544747 | 3_1:-2696013 | None:intergenic |
TTACCTGTAGGAATACGTCT+TGG | 0.547868 | 3_1:+2696010 | Msa0344150:CDS |
CCTTTGAAAATCGGACGTGA+GGG | 0.548394 | 3_1:-2693282 | None:intergenic |
TGACACATTACTAATTCCCC+TGG | 0.549045 | 3_1:-2693859 | None:intergenic |
GAACAAATATAGAACCAGAA+TGG | 0.550621 | 3_1:+2693677 | Msa0344150:CDS |
CCCTTTGAAAATCGGACGTG+AGG | 0.550708 | 3_1:-2693283 | None:intergenic |
ATTCGAACCCCTTTACCTGT+AGG | 0.555112 | 3_1:+2695998 | Msa0344150:CDS |
AGTTGCTAAGAGTAAAATAC+GGG | 0.563519 | 3_1:+2694182 | Msa0344150:CDS |
TTACATCCATTAGTGTGTAA+GGG | 0.565613 | 3_1:+2694342 | Msa0344150:CDS |
AAATATAGAACCAGAATGGA+TGG | 0.566690 | 3_1:+2693681 | Msa0344150:CDS |
TCTATAGAAGAGTTATCTAT+CGG | 0.571448 | 3_1:+2693794 | Msa0344150:CDS |
GCTGTACGAACATCAGATGC+TGG | 0.573261 | 3_1:+2695722 | Msa0344150:CDS |
TACACGTCGACTTGTTGAAG+TGG | 0.573503 | 3_1:+2695751 | Msa0344150:CDS |
CCGATTATTCAAATAGATGG+AGG | 0.576436 | 3_1:+2693742 | Msa0344150:CDS |
ATGCCCAATCTATGCAAAGT+AGG | 0.578492 | 3_1:-2694276 | None:intergenic |
CACCAATTAGTCGGAATGAG+AGG | 0.580106 | 3_1:+2695575 | Msa0344150:CDS |
GAGTCCTATTCATGGGGACC+TGG | 0.582108 | 3_1:+2696056 | Msa0344150:CDS |
TCACTTTCATTACATCGATG+TGG | 0.585158 | 3_1:+2694075 | Msa0344150:CDS |
ATTAATAGACCATTTCGGAA+TGG | 0.587547 | 3_1:+2695220 | Msa0344150:CDS |
CCTACTTTCTTACGATTACG+AGG | 0.587628 | 3_1:+2693367 | Msa0344150:CDS |
GAAATGGGATCCCCAATAGC+CGG | 0.587924 | 3_1:-2694474 | None:intergenic |
ACGATATATATATCGGTTCA+CGG | 0.590851 | 3_1:+2695897 | Msa0344150:CDS |
GGCCTTTATGTATTAACTAG+CGG | 0.596927 | 3_1:+2694522 | Msa0344150:CDS |
AAAATTGGTACAAGAAGCCG+TGG | 0.599616 | 3_1:+2693885 | Msa0344150:CDS |
AGCTCTATTGCTATTTCGCG+GGG | 0.600779 | 3_1:-2694102 | None:intergenic |
ATTCAAAGCAATTTACGAGA+AGG | 0.601229 | 3_1:+2695638 | Msa0344150:CDS |
CTCCTTGATAATGGAATCCG+CGG | 0.604913 | 3_1:+2693913 | Msa0344150:CDS |
AGATATAATTGAGGGCAAAG+AGG | 0.606620 | 3_1:+2693981 | Msa0344150:CDS |
CATCGATGTAATGAAAGTGA+TGG | 0.607503 | 3_1:-2694072 | None:intergenic |
TCTCAAGTGCACCAATTAGT+CGG | 0.615181 | 3_1:+2695566 | Msa0344150:CDS |
CCCCAATAGCCGGAGACAAG+AGG | 0.615798 | 3_1:-2694464 | None:intergenic |
ATTATCAAGGAGTGTATCCA+CGG | 0.619206 | 3_1:-2693902 | None:intergenic |
AATCCGCGGACAACCAATGA+GGG | 0.620928 | 3_1:+2693927 | Msa0344150:CDS |
AAATACTTTAGCCGGATGAG+AGG | 0.622971 | 3_1:+2693256 | None:intergenic |
CGTCCCTCATTGGTTGTCCG+CGG | 0.625858 | 3_1:-2693930 | None:intergenic |
TTGCTACGGAGCCCGTAAAG+GGG | 0.638134 | 3_1:+2695688 | Msa0344150:CDS |
AAATACTTCAAGAAGTTATG+CGG | 0.639489 | 3_1:+2694226 | Msa0344150:CDS |
CGATTATTCAAATAGATGGA+GGG | 0.639639 | 3_1:+2693743 | Msa0344150:CDS |
TTTCACAATAACGTGATAGG+TGG | 0.645396 | 3_1:+2695170 | Msa0344150:CDS |
ACGTATTCCTACAGGTAAAG+GGG | 0.650020 | 3_1:-2696005 | None:intergenic |
CGCGGACAACCAATGAGGGA+CGG | 0.650205 | 3_1:+2693931 | Msa0344150:CDS |
GTTGTACGTCGAACAGATTG+CGG | 0.659130 | 3_1:+2695785 | Msa0344150:CDS |
ACAACAAGTAGATCTACACC+AGG | 0.661649 | 3_1:+2693841 | Msa0344150:CDS |
ATTCAATGCAGACTTTGATG+GGG | 0.662689 | 3_1:+2694365 | Msa0344150:CDS |
GAAAACGAGTTGATTATTCG+GGG | 0.664266 | 3_1:+2694028 | Msa0344150:CDS |
TGGGCGGAGTCCTATTCATG+GGG | 0.665077 | 3_1:+2696050 | Msa0344150:CDS |
GAATCCGCGGACAACCAATG+AGG | 0.667535 | 3_1:+2693926 | Msa0344150:CDS |
TACTTCAAGAAGTTATGCGG+GGG | 0.669171 | 3_1:+2694229 | Msa0344150:CDS |
TTATATGGACTGGATTAAAG+GGG | 0.684921 | 3_1:-2695514 | None:intergenic |
ATACTTCAAGAAGTTATGCG+GGG | 0.687954 | 3_1:+2694228 | Msa0344150:CDS |
TCAGTATGGGAATGTACATG+CGG | 0.691247 | 3_1:+2695403 | Msa0344150:CDS |
CAACAAGTAGATCTACACCA+GGG | 0.701288 | 3_1:+2693842 | Msa0344150:CDS |
AACAAGTAGATCTACACCAG+GGG | 0.706918 | 3_1:+2693843 | Msa0344150:CDS |
GGATTAATGTCAGATCCACA+AGG | 0.711466 | 3_1:+2695596 | Msa0344150:CDS |
ATAATCGGTCTCAATTCGGG+AGG | 0.712530 | 3_1:-2693727 | None:intergenic |
TTAACTAGCGGAAATCGTCG+AGG | 0.734048 | 3_1:+2694534 | Msa0344150:CDS |
TCTGCCGATTGTGTTATGGG+CGG | 0.746299 | 3_1:+2696034 | Msa0344150:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTGATACAAACATTAAT+TGG | + | chr3_1:2695860-2695879 | Msa0344150:CDS | 15.0% |
!! | TCTGGATTTAAGAATTATTA+TGG | + | chr3_1:2693519-2693538 | Msa0344150:CDS | 20.0% |
!!! | TTTAGAATTCTGCAATTAAA+CGG | - | chr3_1:2694583-2694602 | None:intergenic | 20.0% |
!! | GTACCTATTATGAAATTTAT+GGG | + | chr3_1:2694799-2694818 | Msa0344150:intron | 20.0% |
!! | GTAAATTTATGTTATGATAC+TGG | + | chr3_1:2694993-2695012 | Msa0344150:intron | 20.0% |
!!! | AAGAAATGAATCCTAATTTT+AGG | + | chr3_1:2695483-2695502 | Msa0344150:CDS | 20.0% |
!! | GAATATATAATTTCTTGCTA+CGG | + | chr3_1:2695674-2695693 | Msa0344150:CDS | 20.0% |
!!! | AAAGTAGGTTTTTTAACTAC+GGG | - | chr3_1:2693355-2693374 | None:intergenic | 25.0% |
!!! | GAAAGTAGGTTTTTTAACTA+CGG | - | chr3_1:2693356-2693375 | None:intergenic | 25.0% |
! | AATTATTATGGATTCTTCGT+TGG | + | chr3_1:2693531-2693550 | Msa0344150:CDS | 25.0% |
!!! | AGGAAGAAGAAAGAATTTTT+TGG | + | chr3_1:2693621-2693640 | Msa0344150:CDS | 25.0% |
!!! | ATTCTGGTTCTATATTTGTT+CGG | - | chr3_1:2693678-2693697 | None:intergenic | 25.0% |
! | TCTATAGAAGAGTTATCTAT+CGG | + | chr3_1:2693794-2693813 | Msa0344150:CDS | 25.0% |
!!! | TAGATCTACTTGTTGTTAAT+AGG | - | chr3_1:2693837-2693856 | None:intergenic | 25.0% |
! | AGTAATGTGTCAAGAAAAAT+TGG | + | chr3_1:2693870-2693889 | Msa0344150:CDS | 25.0% |
!! | ATCGTTTTCAGATATAATTG+AGG | + | chr3_1:2693972-2693991 | Msa0344150:CDS | 25.0% |
!! | TCGTTTTCAGATATAATTGA+GGG | + | chr3_1:2693973-2693992 | Msa0344150:CDS | 25.0% |
! | AAATACTTCAAGAAGTTATG+CGG | + | chr3_1:2694226-2694245 | Msa0344150:CDS | 25.0% |
!!! | TTTCAACCTATTTTAGTAGA+AGG | + | chr3_1:2694306-2694325 | Msa0344150:CDS | 25.0% |
! | TCATAGGAATTGCAAAAAAA+GGG | - | chr3_1:2694654-2694673 | None:intergenic | 25.0% |
! | ATCATAGGAATTGCAAAAAA+AGG | - | chr3_1:2694655-2694674 | None:intergenic | 25.0% |
!! | TAAATTTCGATAGTCCTTTT+TGG | + | chr3_1:2694703-2694722 | Msa0344150:intron | 25.0% |
! | GGTACCTATTATGAAATTTA+TGG | + | chr3_1:2694798-2694817 | Msa0344150:intron | 25.0% |
! | ATGCCCATAAATTTCATAAT+AGG | - | chr3_1:2694805-2694824 | None:intergenic | 25.0% |
! | TGATTAGATACCATATGAAT+AGG | - | chr3_1:2694943-2694962 | None:intergenic | 25.0% |
! | ATGGTATCTAATCATATAGA+TGG | + | chr3_1:2694949-2694968 | Msa0344150:intron | 25.0% |
! | ATAACATAAATTTACCTAGC+TGG | - | chr3_1:2694988-2695007 | None:intergenic | 25.0% |
! | CGTGAATAAACATAAAGAAA+AGG | + | chr3_1:2695054-2695073 | Msa0344150:intron | 25.0% |
! | AATGAATTTGAGTCAATGAT+TGG | - | chr3_1:2695087-2695106 | None:intergenic | 25.0% |
!! | CTTTTAACAATACCTTCTAA+AGG | + | chr3_1:2695329-2695348 | Msa0344150:CDS | 25.0% |
!! | TGAACAACAAAGTTCTATTT+TGG | + | chr3_1:2695370-2695389 | Msa0344150:CDS | 25.0% |
! | TTGGAAAAACATAATCAGTA+TGG | + | chr3_1:2695389-2695408 | Msa0344150:CDS | 25.0% |
! | TGGAAAAACATAATCAGTAT+GGG | + | chr3_1:2695390-2695409 | Msa0344150:CDS | 25.0% |
!!! | ATTATATGGACTGGATTAAA+GGG | - | chr3_1:2695518-2695537 | None:intergenic | 25.0% |
! | GTTTGTATCAAAATTCTTTC+TGG | - | chr3_1:2695854-2695873 | None:intergenic | 25.0% |
! | AGAAATCAAGATATTGGAAT+TGG | + | chr3_1:2695932-2695951 | Msa0344150:CDS | 25.0% |
AGCAAACGAAAAATTTGGAT+AGG | - | chr3_1:2693329-2693348 | None:intergenic | 30.0% | |
! | ATCCAAATTTTTCGTTTGCT+AGG | + | chr3_1:2693329-2693348 | Msa0344150:CDS | 30.0% |
TCGAATATGAAATCCAATCT+TGG | + | chr3_1:2693395-2693414 | Msa0344150:CDS | 30.0% | |
! | CGAAATAGAGAAATTTCTAG+TGG | + | chr3_1:2693466-2693485 | Msa0344150:CDS | 30.0% |
TTGGTAGAATGGAAAGAATT+AGG | + | chr3_1:2693550-2693569 | Msa0344150:CDS | 30.0% | |
CACTGACAATGAAAATGAAT+GGG | + | chr3_1:2693585-2693604 | Msa0344150:CDS | 30.0% | |
GAACAAATATAGAACCAGAA+TGG | + | chr3_1:2693677-2693696 | Msa0344150:CDS | 30.0% | |
AAATATAGAACCAGAATGGA+TGG | + | chr3_1:2693681-2693700 | Msa0344150:CDS | 30.0% | |
TTGAATAATCGGTCTCAATT+CGG | - | chr3_1:2693734-2693753 | None:intergenic | 30.0% | |
AGACCGATTATTCAAATAGA+TGG | + | chr3_1:2693739-2693758 | Msa0344150:CDS | 30.0% | |
CCTCCATCTATTTGAATAAT+CGG | - | chr3_1:2693745-2693764 | None:intergenic | 30.0% | |
CGATTATTCAAATAGATGGA+GGG | + | chr3_1:2693743-2693762 | Msa0344150:CDS | 30.0% | |
!! | TGGAAAACGAGTTGATTATT+CGG | + | chr3_1:2694026-2694045 | Msa0344150:CDS | 30.0% |
TTTCAGACATTTCTAATTCG+TGG | + | chr3_1:2694126-2694145 | Msa0344150:CDS | 30.0% | |
! | AAACATTTTGCTTCGAACAT+AGG | + | chr3_1:2694159-2694178 | Msa0344150:CDS | 30.0% |
GAGTTGCTAAGAGTAAAATA+CGG | + | chr3_1:2694181-2694200 | Msa0344150:CDS | 30.0% | |
AGTTGCTAAGAGTAAAATAC+GGG | + | chr3_1:2694182-2694201 | Msa0344150:CDS | 30.0% | |
! | TGAAGTATTTCCCATACAAT+CGG | - | chr3_1:2694216-2694235 | None:intergenic | 30.0% |
AATACTTCAAGAAGTTATGC+GGG | + | chr3_1:2694227-2694246 | Msa0344150:CDS | 30.0% | |
TTTACATCCATTAGTGTGTA+AGG | + | chr3_1:2694341-2694360 | Msa0344150:CDS | 30.0% | |
TTACATCCATTAGTGTGTAA+GGG | + | chr3_1:2694342-2694361 | Msa0344150:CDS | 30.0% | |
TTCCGCTAGTTAATACATAA+AGG | - | chr3_1:2694527-2694546 | None:intergenic | 30.0% | |
! | GAAGTTCACTATGAATCTTT+TGG | + | chr3_1:2694777-2694796 | Msa0344150:intron | 30.0% |
ATATACATTAGAACCACTGT+TGG | + | chr3_1:2694864-2694883 | Msa0344150:intron | 30.0% | |
AAAAGAAATATGACCAACAG+TGG | - | chr3_1:2694880-2694899 | None:intergenic | 30.0% | |
GAAATTGAAGAAGCTATACA+AGG | + | chr3_1:2694906-2694925 | Msa0344150:intron | 30.0% | |
GTTATTGTGAAAGACTAGAT+TGG | - | chr3_1:2695162-2695181 | None:intergenic | 30.0% | |
TCTGCTAATAAGTCGTTTAA+TGG | - | chr3_1:2695201-2695220 | None:intergenic | 30.0% | |
AGCAGATTAATAGACCATTT+CGG | + | chr3_1:2695215-2695234 | Msa0344150:CDS | 30.0% | |
ATTAATAGACCATTTCGGAA+TGG | + | chr3_1:2695220-2695239 | Msa0344150:CDS | 30.0% | |
ACTGCTACATCTATTTCATT+AGG | + | chr3_1:2695296-2695315 | Msa0344150:CDS | 30.0% | |
! | TAACAATACCTTCTAAAGGA+TGG | + | chr3_1:2695333-2695352 | Msa0344150:CDS | 30.0% |
CATACCATATTTCAATGGAT+TGG | - | chr3_1:2695442-2695461 | None:intergenic | 30.0% | |
TGTAGCATACCATATTTCAA+TGG | - | chr3_1:2695447-2695466 | None:intergenic | 30.0% | |
!! | TTATATGGACTGGATTAAAG+GGG | - | chr3_1:2695517-2695536 | None:intergenic | 30.0% |
!! | CATTATATGGACTGGATTAA+AGG | - | chr3_1:2695519-2695538 | None:intergenic | 30.0% |
GAAAAAGACATTATATGGAC+TGG | - | chr3_1:2695527-2695546 | None:intergenic | 30.0% | |
! | GTCCATATAATGTCTTTTTC+AGG | + | chr3_1:2695527-2695546 | Msa0344150:CDS | 30.0% |
CTCCTGAAAAAGACATTATA+TGG | - | chr3_1:2695532-2695551 | None:intergenic | 30.0% | |
AAATCAATCATTTGTCCTTG+TGG | - | chr3_1:2695614-2695633 | None:intergenic | 30.0% | |
! | TCTCGTAAATTGCTTTGAAT+GGG | - | chr3_1:2695638-2695657 | None:intergenic | 30.0% |
! | TTCTCGTAAATTGCTTTGAA+TGG | - | chr3_1:2695639-2695658 | None:intergenic | 30.0% |
ATTCAAAGCAATTTACGAGA+AGG | + | chr3_1:2695638-2695657 | Msa0344150:CDS | 30.0% | |
ATTTCTGTAAATACCCGAAA+TGG | + | chr3_1:2695821-2695840 | Msa0344150:CDS | 30.0% | |
! | TTTCTGGTATCATTCCATTT+CGG | - | chr3_1:2695838-2695857 | None:intergenic | 30.0% |
GTAGCAGACGATATATATAT+CGG | + | chr3_1:2695890-2695909 | Msa0344150:CDS | 30.0% | |
!! | ACGATATATATATCGGTTCA+CGG | + | chr3_1:2695897-2695916 | Msa0344150:CDS | 30.0% |
GTCGTTAGAAATCAAGATAT+TGG | + | chr3_1:2695926-2695945 | Msa0344150:CDS | 30.0% | |
AAAGGGGTTCGAATAAATAT+TGG | - | chr3_1:2695992-2696011 | None:intergenic | 30.0% | |
TTGGATAGGATCCAATAAGA+TGG | - | chr3_1:2693315-2693334 | None:intergenic | 35.0% | |
GGATACTGTATTTCCAAGAT+TGG | - | chr3_1:2693411-2693430 | None:intergenic | 35.0% | |
CTTGAGTAGCAAAAAAGAGT+GGG | - | chr3_1:2693432-2693451 | None:intergenic | 35.0% | |
ACGAGAACAATTAGTTGATC+TGG | + | chr3_1:2693501-2693520 | Msa0344150:CDS | 35.0% | |
ATGGAAAGAATTAGGAGAAG+AGG | + | chr3_1:2693558-2693577 | Msa0344150:CDS | 35.0% | |
TGGAAAGAATTAGGAGAAGA+GGG | + | chr3_1:2693559-2693578 | Msa0344150:CDS | 35.0% | |
! | CCATTCATTTTCATTGTCAG+TGG | - | chr3_1:2693587-2693606 | None:intergenic | 35.0% |
CCACTGACAATGAAAATGAA+TGG | + | chr3_1:2693584-2693603 | Msa0344150:CDS | 35.0% | |
AGACATAAAACCATCCATTC+TGG | - | chr3_1:2693694-2693713 | None:intergenic | 35.0% | |
TGAATAATCGGTCTCAATTC+GGG | - | chr3_1:2693733-2693752 | None:intergenic | 35.0% | |
CCGATTATTCAAATAGATGG+AGG | + | chr3_1:2693742-2693761 | Msa0344150:CDS | 35.0% | |
! | ATTATCAAGGAGTGTATCCA+CGG | - | chr3_1:2693905-2693924 | None:intergenic | 35.0% |
AGATATAATTGAGGGCAAAG+AGG | + | chr3_1:2693981-2694000 | Msa0344150:CDS | 35.0% | |
GATATAATTGAGGGCAAAGA+GGG | + | chr3_1:2693982-2694001 | Msa0344150:CDS | 35.0% | |
!! | GGAAAACGAGTTGATTATTC+GGG | + | chr3_1:2694027-2694046 | Msa0344150:CDS | 35.0% |
!! | GAAAACGAGTTGATTATTCG+GGG | + | chr3_1:2694028-2694047 | Msa0344150:CDS | 35.0% |
CATCGATGTAATGAAAGTGA+TGG | - | chr3_1:2694075-2694094 | None:intergenic | 35.0% | |
TCACTTTCATTACATCGATG+TGG | + | chr3_1:2694075-2694094 | Msa0344150:CDS | 35.0% | |
!! | ATAGCTCTATTGCTATTTCG+CGG | - | chr3_1:2694107-2694126 | None:intergenic | 35.0% |
GGAAAAAGAACCGATTGTAT+GGG | + | chr3_1:2694203-2694222 | Msa0344150:CDS | 35.0% | |
ATACTTCAAGAAGTTATGCG+GGG | + | chr3_1:2694228-2694247 | Msa0344150:CDS | 35.0% | |
TTGAATCCCTTACACACTAA+TGG | - | chr3_1:2694351-2694370 | None:intergenic | 35.0% | |
GATTCAATGCAGACTTTGAT+GGG | + | chr3_1:2694364-2694383 | Msa0344150:CDS | 35.0% | |
ATTCAATGCAGACTTTGATG+GGG | + | chr3_1:2694365-2694384 | Msa0344150:CDS | 35.0% | |
TGTTCATGTGCCTTTATCTT+TGG | + | chr3_1:2694398-2694417 | Msa0344150:CDS | 35.0% | |
!! | AAGCATATCTTGAGTTGGTA+CGG | - | chr3_1:2694499-2694518 | None:intergenic | 35.0% |
CCTATAAGCATATCTTGAGT+TGG | - | chr3_1:2694504-2694523 | None:intergenic | 35.0% | |
CCAACTCAAGATATGCTTAT+AGG | + | chr3_1:2694501-2694520 | Msa0344150:CDS | 35.0% | |
GGCCTTTATGTATTAACTAG+CGG | + | chr3_1:2694522-2694541 | Msa0344150:CDS | 35.0% | |
TGCAATTCCTATGATGCAAT+TGG | + | chr3_1:2694660-2694679 | Msa0344150:intron | 35.0% | |
ATAAGCTCCAATTGCATCAT+AGG | - | chr3_1:2694670-2694689 | None:intergenic | 35.0% | |
GATTCATAGTGAACTTCGAT+AGG | - | chr3_1:2694774-2694793 | None:intergenic | 35.0% | |
! | TTTTCTCGAGCCTATTCATA+TGG | + | chr3_1:2694930-2694949 | Msa0344150:intron | 35.0% |
TATGATACTGGCGTAAATTC+AGG | + | chr3_1:2695005-2695024 | Msa0344150:intron | 35.0% | |
GTCTTTCACAATAACGTGAT+AGG | + | chr3_1:2695167-2695186 | Msa0344150:CDS | 35.0% | |
TTTCACAATAACGTGATAGG+TGG | + | chr3_1:2695170-2695189 | Msa0344150:CDS | 35.0% | |
ATGTATATGCCATTCCGAAA+TGG | - | chr3_1:2695232-2695251 | None:intergenic | 35.0% | |
TGGATCAAGTAAAGACTCTA+GGG | + | chr3_1:2695261-2695280 | Msa0344150:CDS | 35.0% | |
!! | AACTTTGTTGTTCAGCATCT+TGG | - | chr3_1:2695364-2695383 | None:intergenic | 35.0% |
TACGCCAATCCATTGAAATA+TGG | + | chr3_1:2695435-2695454 | Msa0344150:CDS | 35.0% | |
TTCTGGTATCATTCCATTTC+GGG | - | chr3_1:2695837-2695856 | None:intergenic | 35.0% | |
GGCCTAGCAAACGAAAAATT+TGG | - | chr3_1:2693334-2693353 | None:intergenic | 40.0% | |
CCTCGTAATCGTAAGAAAGT+AGG | - | chr3_1:2693370-2693389 | None:intergenic | 40.0% | |
CCTACTTTCTTACGATTACG+AGG | + | chr3_1:2693367-2693386 | Msa0344150:CDS | 40.0% | |
CCTTGAGTAGCAAAAAAGAG+TGG | - | chr3_1:2693433-2693452 | None:intergenic | 40.0% | |
!!! | CCACTCTTTTTTGCTACTCA+AGG | + | chr3_1:2693430-2693449 | Msa0344150:CDS | 40.0% |
!! | AGAGAAATTTCTAGTGGAGC+AGG | + | chr3_1:2693472-2693491 | Msa0344150:CDS | 40.0% |
! | TGGATTCTTCGTTGGTAGAA+TGG | + | chr3_1:2693539-2693558 | Msa0344150:CDS | 40.0% |
GAATGGGAAGATCGAAAAGT+AGG | + | chr3_1:2693601-2693620 | Msa0344150:CDS | 40.0% | |
!!! | GAATTTTTTGGTTCGACGCA+TGG | + | chr3_1:2693633-2693652 | Msa0344150:CDS | 40.0% |
TGGAGGGAAACTAATGAGTT+CGG | + | chr3_1:2693759-2693778 | Msa0344150:CDS | 40.0% | |
ACAACAAGTAGATCTACACC+AGG | + | chr3_1:2693841-2693860 | Msa0344150:CDS | 40.0% | |
CAACAAGTAGATCTACACCA+GGG | + | chr3_1:2693842-2693861 | Msa0344150:CDS | 40.0% | |
AACAAGTAGATCTACACCAG+GGG | + | chr3_1:2693843-2693862 | Msa0344150:CDS | 40.0% | |
TGACACATTACTAATTCCCC+TGG | - | chr3_1:2693862-2693881 | None:intergenic | 40.0% | |
AAAATTGGTACAAGAAGCCG+TGG | + | chr3_1:2693885-2693904 | Msa0344150:CDS | 40.0% | |
GTGGATACACTCCTTGATAA+TGG | + | chr3_1:2693904-2693923 | Msa0344150:CDS | 40.0% | |
TTATTATGACCGTCCCTCAT+TGG | - | chr3_1:2693943-2693962 | None:intergenic | 40.0% | |
!! | TAGCTCTATTGCTATTTCGC+GGG | - | chr3_1:2694106-2694125 | None:intergenic | 40.0% |
GGGAAAAAGAACCGATTGTA+TGG | + | chr3_1:2694202-2694221 | Msa0344150:CDS | 40.0% | |
TACTTCAAGAAGTTATGCGG+GGG | + | chr3_1:2694229-2694248 | Msa0344150:CDS | 40.0% | |
ATGCCCAATCTATGCAAAGT+AGG | - | chr3_1:2694279-2694298 | None:intergenic | 40.0% | |
TTTGCATAGATTGGGCATAC+AGG | + | chr3_1:2694281-2694300 | Msa0344150:CDS | 40.0% | |
GCACGTCCTTCTACTAAAAT+AGG | - | chr3_1:2694315-2694334 | None:intergenic | 40.0% | |
GGATTCAATGCAGACTTTGA+TGG | + | chr3_1:2694363-2694382 | Msa0344150:CDS | 40.0% | |
AGACTTTGATGGGGATCAAA+TGG | + | chr3_1:2694374-2694393 | Msa0344150:CDS | 40.0% | |
TCATGTGCCTTTATCTTTGG+AGG | + | chr3_1:2694401-2694420 | Msa0344150:CDS | 40.0% | |
TCATACAAACCTCTTGTCTC+CGG | + | chr3_1:2694455-2694474 | Msa0344150:CDS | 40.0% | |
!! | TCTTGAGTTGGTACGGAAAT+GGG | - | chr3_1:2694492-2694511 | None:intergenic | 40.0% |
!! | ATCTTGAGTTGGTACGGAAA+TGG | - | chr3_1:2694493-2694512 | None:intergenic | 40.0% |
!! | GTTAGTGTTGATATCCAGCT+AGG | + | chr3_1:2694971-2694990 | Msa0344150:intron | 40.0% |
ATATTCCACTCAGTGGGATT+CGG | - | chr3_1:2695116-2695135 | None:intergenic | 40.0% | |
!! | GTGGAATATGGAGGTACTTA+TGG | + | chr3_1:2695127-2695146 | Msa0344150:intron | 40.0% |
CTAGAGTCTTTACTTGATCC+AGG | - | chr3_1:2695262-2695281 | None:intergenic | 40.0% | |
CTGGATCAAGTAAAGACTCT+AGG | + | chr3_1:2695260-2695279 | Msa0344150:CDS | 40.0% | |
TAGATGTAGCAGTAGCTTGA+CGG | - | chr3_1:2695289-2695308 | None:intergenic | 40.0% | |
TCAGTATGGGAATGTACATG+CGG | + | chr3_1:2695403-2695422 | Msa0344150:CDS | 40.0% | |
GGGTCAGTCATCCTAAAATT+AGG | - | chr3_1:2695497-2695516 | None:intergenic | 40.0% | |
!!! | ATGTCTTTTTCAGGAGCTAG+AGG | + | chr3_1:2695536-2695555 | Msa0344150:CDS | 40.0% |
TCTCAAGTGCACCAATTAGT+CGG | + | chr3_1:2695566-2695585 | Msa0344150:CDS | 40.0% | |
ATCCTCTCATTCCGACTAAT+TGG | - | chr3_1:2695580-2695599 | None:intergenic | 40.0% | |
GGATTAATGTCAGATCCACA+AGG | + | chr3_1:2695596-2695615 | Msa0344150:CDS | 40.0% | |
ACGTATTCCTACAGGTAAAG+GGG | - | chr3_1:2696008-2696027 | None:intergenic | 40.0% | |
GACGTATTCCTACAGGTAAA+GGG | - | chr3_1:2696009-2696028 | None:intergenic | 40.0% | |
AGACGTATTCCTACAGGTAA+AGG | - | chr3_1:2696010-2696029 | None:intergenic | 40.0% | |
TTACCTGTAGGAATACGTCT+TGG | + | chr3_1:2696010-2696029 | Msa0344150:CDS | 40.0% | |
! | CCTTTGAAAATCGGACGTGA+GGG | - | chr3_1:2693285-2693304 | None:intergenic | 45.0% |
! | CCTCACGTCCGATTTTCAAA+GGG | + | chr3_1:2693283-2693302 | Msa0344150:CDS | 45.0% |
! | CTCACGTCCGATTTTCAAAG+GGG | + | chr3_1:2693284-2693303 | Msa0344150:CDS | 45.0% |
! | TCACGTCCGATTTTCAAAGG+GGG | + | chr3_1:2693285-2693304 | Msa0344150:CDS | 45.0% |
! | GGATCTCCCCCTTTGAAAAT+CGG | - | chr3_1:2693294-2693313 | None:intergenic | 45.0% |
AAGGGGGAGATCCATCTTAT+TGG | + | chr3_1:2693301-2693320 | Msa0344150:CDS | 45.0% | |
ATAATCGGTCTCAATTCGGG+AGG | - | chr3_1:2693730-2693749 | None:intergenic | 45.0% | |
!! | CTCCTTGATAATGGAATCCG+CGG | + | chr3_1:2693913-2693932 | Msa0344150:CDS | 45.0% |
AGATTTCGAGAGACTCTGCT+TGG | + | chr3_1:2694006-2694025 | Msa0344150:CDS | 45.0% | |
!! | AGCTCTATTGCTATTTCGCG+GGG | - | chr3_1:2694105-2694124 | None:intergenic | 45.0% |
AGCGCCTACTTTGCATAGAT+TGG | + | chr3_1:2694272-2694291 | Msa0344150:CDS | 45.0% | |
GCGCCTACTTTGCATAGATT+GGG | + | chr3_1:2694273-2694292 | Msa0344150:CDS | 45.0% | |
GCTTGAGCCTCCAAAGATAA+AGG | - | chr3_1:2694411-2694430 | None:intergenic | 45.0% | |
TTAACTAGCGGAAATCGTCG+AGG | + | chr3_1:2694534-2694553 | Msa0344150:CDS | 45.0% | |
!!! | TCGATAGTCCTTTTTGGCTC+CGG | + | chr3_1:2694709-2694728 | Msa0344150:intron | 45.0% |
! | TGCATTGATCTATTCGCCAC+CGG | - | chr3_1:2694731-2694750 | None:intergenic | 45.0% |
GAATCCCACTGAGTGGAATA+TGG | + | chr3_1:2695115-2695134 | Msa0344150:intron | 45.0% | |
ACCTCCATATTCCACTCAGT+GGG | - | chr3_1:2695122-2695141 | None:intergenic | 45.0% | |
TACCTCCATATTCCACTCAG+TGG | - | chr3_1:2695123-2695142 | None:intergenic | 45.0% | |
!! | TGGAGGTACTTATGGCAGAA+CGG | + | chr3_1:2695135-2695154 | Msa0344150:intron | 45.0% |
GGCATATACATCACACATCC+TGG | + | chr3_1:2695241-2695260 | Msa0344150:CDS | 45.0% | |
!! | TGGACTAGCCATCCTTTAGA+AGG | - | chr3_1:2695344-2695363 | None:intergenic | 45.0% |
CACCAATTAGTCGGAATGAG+AGG | + | chr3_1:2695575-2695594 | Msa0344150:CDS | 45.0% | |
AGTATCCACAACCCCTTTAC+GGG | - | chr3_1:2695702-2695721 | None:intergenic | 45.0% | |
CAGTATCCACAACCCCTTTA+CGG | - | chr3_1:2695703-2695722 | None:intergenic | 45.0% | |
!! | TACACGTCGACTTGTTGAAG+TGG | + | chr3_1:2695751-2695770 | Msa0344150:CDS | 45.0% |
GTTGTACGTCGAACAGATTG+CGG | + | chr3_1:2695785-2695804 | Msa0344150:CDS | 45.0% | |
ATTCGAACCCCTTTACCTGT+AGG | + | chr3_1:2695998-2696017 | Msa0344150:CDS | 45.0% | |
GATCCAAGACGTATTCCTAC+AGG | - | chr3_1:2696016-2696035 | None:intergenic | 45.0% | |
! | TGGATCTGCCGATTGTGTTA+TGG | + | chr3_1:2696030-2696049 | Msa0344150:CDS | 45.0% |
! | GGATCTGCCGATTGTGTTAT+GGG | + | chr3_1:2696031-2696050 | Msa0344150:CDS | 45.0% |
! | CCCTCACGTCCGATTTTCAA+AGG | + | chr3_1:2693282-2693301 | Msa0344150:CDS | 50.0% |
! | CCCTTTGAAAATCGGACGTG+AGG | - | chr3_1:2693286-2693305 | None:intergenic | 50.0% |
CTCAATTCGGGAGGAAGAAC+TGG | - | chr3_1:2693721-2693740 | None:intergenic | 50.0% | |
GTCCGCGGATTCCATTATCA+AGG | - | chr3_1:2693918-2693937 | None:intergenic | 50.0% | |
AATCCGCGGACAACCAATGA+GGG | + | chr3_1:2693927-2693946 | Msa0344150:CDS | 50.0% | |
GGGCGTTCTGTTATTGTCGT+AGG | + | chr3_1:2694048-2694067 | Msa0344150:CDS | 50.0% | |
GGCGCTCTATTCAGCAATAC+TGG | - | chr3_1:2694258-2694277 | None:intergenic | 50.0% | |
AACCTCTTGTCTCCGGCTAT+TGG | + | chr3_1:2694462-2694481 | Msa0344150:CDS | 50.0% | |
ACCTCTTGTCTCCGGCTATT+GGG | + | chr3_1:2694463-2694482 | Msa0344150:CDS | 50.0% | |
GAAATGGGATCCCCAATAGC+CGG | - | chr3_1:2694477-2694496 | None:intergenic | 50.0% | |
!!! | ATAGTCCTTTTTGGCTCCGG+TGG | + | chr3_1:2694712-2694731 | Msa0344150:intron | 50.0% |
TCCCACTGAGTGGAATATGG+AGG | + | chr3_1:2695118-2695137 | Msa0344150:intron | 50.0% | |
!! | GGAGGTACTTATGGCAGAAC+GGG | + | chr3_1:2695136-2695155 | Msa0344150:intron | 50.0% |
GCTGTACGAACATCAGATGC+TGG | + | chr3_1:2695722-2695741 | Msa0344150:CDS | 50.0% | |
ACAGATTGCGGTACGATTCG+CGG | + | chr3_1:2695797-2695816 | Msa0344150:CDS | 50.0% | |
! | TCTGCCGATTGTGTTATGGG+CGG | + | chr3_1:2696034-2696053 | Msa0344150:CDS | 50.0% |
GACTCCGCCCATAACACAAT+CGG | - | chr3_1:2696041-2696060 | None:intergenic | 50.0% | |
TATGGGCGGAGTCCTATTCA+TGG | + | chr3_1:2696048-2696067 | Msa0344150:CDS | 50.0% | |
ATGGGCGGAGTCCTATTCAT+GGG | + | chr3_1:2696049-2696068 | Msa0344150:CDS | 50.0% | |
GAATCCGCGGACAACCAATG+AGG | + | chr3_1:2693926-2693945 | Msa0344150:CDS | 55.0% | |
CCTCTTGTCTCCGGCTATTG+GGG | + | chr3_1:2694464-2694483 | Msa0344150:CDS | 55.0% | |
ATTCGCCACCGGAGCCAAAA+AGG | - | chr3_1:2694720-2694739 | None:intergenic | 55.0% | |
TCGAACCGAATCCCACTGAG+TGG | + | chr3_1:2695108-2695127 | Msa0344150:intron | 55.0% | |
TCTTGCTACGGAGCCCGTAA+AGG | + | chr3_1:2695686-2695705 | Msa0344150:CDS | 55.0% | |
CTTGCTACGGAGCCCGTAAA+GGG | + | chr3_1:2695687-2695706 | Msa0344150:CDS | 55.0% | |
TTGCTACGGAGCCCGTAAAG+GGG | + | chr3_1:2695688-2695707 | Msa0344150:CDS | 55.0% | |
CAGATTGCGGTACGATTCGC+GGG | + | chr3_1:2695798-2695817 | Msa0344150:CDS | 55.0% | |
TGGGCGGAGTCCTATTCATG+GGG | + | chr3_1:2696050-2696069 | Msa0344150:CDS | 55.0% | |
GAGTCCTATTCATGGGGACC+TGG | + | chr3_1:2696056-2696075 | Msa0344150:CDS | 55.0% | |
! | CGTCCCTCATTGGTTGTCCG+CGG | - | chr3_1:2693933-2693952 | None:intergenic | 60.0% |
CGCGGACAACCAATGAGGGA+CGG | + | chr3_1:2693931-2693950 | Msa0344150:CDS | 60.0% | |
CCCCAATAGCCGGAGACAAG+AGG | - | chr3_1:2694467-2694486 | None:intergenic | 60.0% | |
CGGAGCCCGTAAAGGGGTTG+TGG | + | chr3_1:2695694-2695713 | Msa0344150:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 2693271 | 2696081 | 2693271 | ID=Msa0344150;Name=Msa0344150 |
chr3_1 | mRNA | 2693271 | 2696081 | 2693271 | ID=Msa0344150-mRNA-1;Parent=Msa0344150;Name=Msa0344150-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|2|0|737 |
chr3_1 | exon | 2693271 | 2694555 | 2693271 | ID=Msa0344150-mRNA-1:exon:840;Parent=Msa0344150-mRNA-1 |
chr3_1 | exon | 2695153 | 2696081 | 2695153 | ID=Msa0344150-mRNA-1:exon:841;Parent=Msa0344150-mRNA-1 |
chr3_1 | CDS | 2693271 | 2694555 | 2693271 | ID=Msa0344150-mRNA-1:cds;Parent=Msa0344150-mRNA-1 |
chr3_1 | CDS | 2695153 | 2696081 | 2695153 | ID=Msa0344150-mRNA-1:cds;Parent=Msa0344150-mRNA-1 |
Gene Sequence |
Protein sequence |