AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1394250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1394250 MtrunA17_CPg0492851 99.692 325 1 0 65 389 1 325 0.0 659
Msa1394250 MtrunA17_Chr4g0015731 99.692 325 1 0 65 389 1 325 0.0 659
Msa1394250 MtrunA17_Chr4g0016821 99.692 325 1 0 65 389 1 325 0.0 659
Msa1394250 MtrunA17_Chr4g0016981 83.186 113 4 1 108 220 42 139 2.08e-58 187
Msa1394250 MtrunA17_Chr4g0016991 95.385 65 3 0 325 389 1 65 4.08e-36 126
Msa1394250 MtrunA17_Chr5g0403621 96.667 60 2 0 1 60 86 145 4.59e-35 127
Msa1394250 MtrunA17_Chr4g0016811 98.333 60 1 0 1 60 95 154 2.12e-34 127
Msa1394250 MtrunA17_CPg0492871 98.333 60 1 0 1 60 86 145 2.37e-34 127
Msa1394250 MtrunA17_Chr4g0015721 98.333 60 1 0 1 60 86 145 2.37e-34 127
Msa1394250 MtrunA17_Chr3g0141111 94.737 57 3 0 1 57 15 71 3.31e-33 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1394250 ATCG00540.1 90.625 320 30 0 70 389 1 320 0.0 595
Msa1394250 ATCG00530.1 67.241 58 19 0 3 60 88 145 2.46e-18 83.6

Find 87 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTGGCATCTATTATTT+TGG 0.108321 tig0021785:+96820 Msa1394250:CDS
TTCTAAGTGGTTATTCTATT+AGG 0.170612 tig0021785:+95403 Msa1394250:CDS
ACAAGGTCTGTTGTTCTTCT+TGG 0.210830 tig0021785:+96805 Msa1394250:CDS
TCTAAGTGGTTATTCTATTA+GGG 0.213858 tig0021785:+95404 Msa1394250:CDS
CTTGTGGTAGGCCCCGTTCC+TGG 0.214230 tig0021785:+96389 Msa1394250:CDS
ACATTAGGATTACTCGTTAA+TGG 0.226644 tig0021785:-96728 None:intergenic
TAGAATAACCACTTAGAATA+AGG 0.296044 tig0021785:-95398 None:intergenic
CTACAGGCTTATTAGCTAAA+TGG 0.299374 tig0021785:-96124 None:intergenic
CTATATACGTAGGCGGGAAT+AGG 0.308836 tig0021785:+96492 Msa1394250:CDS
CTATATTTCTTCCCAGGAAC+GGG 0.314257 tig0021785:-96401 None:intergenic
AATCCTAATGTGGGTGGATT+TGG 0.318985 tig0021785:+96740 Msa1394250:CDS
AACTCATTATTCTTAACTCT+TGG 0.323937 tig0021785:+95436 Msa1394250:CDS
AAAATTATACGAAAAGAAAA+AGG 0.339453 tig0021785:+96593 Msa1394250:CDS
TATATACGTAGGCGGGAATA+GGG 0.340058 tig0021785:+96493 Msa1394250:CDS
CTATTCCCGCCTACGTATAT+AGG 0.341092 tig0021785:-96491 None:intergenic
GTTAAACAAGTTCTTGCTAA+TGG 0.346567 tig0021785:+96221 Msa1394250:CDS
GGTTGTTCGTCTCTATCAAT+TGG 0.367131 tig0021785:-95326 None:intergenic
CCCTCTGAAACAAGAAGTTC+TGG 0.373836 tig0021785:-96683 None:intergenic
TAATGTGGGTGGATTTGGTC+AGG 0.386047 tig0021785:+96745 Msa1394250:CDS
TGACCAAATCCACCCACATT+AGG 0.412065 tig0021785:-96743 None:intergenic
TGTTTAACTTGCATATCATA+AGG 0.412925 tig0021785:-96206 None:intergenic
ACTCATTATTCTTAACTCTT+GGG 0.414290 tig0021785:+95437 Msa1394250:CDS
TCTCTCTTAGTAGCGGGATC+TGG 0.425976 tig0021785:-96449 None:intergenic
AATGGGATATGCATTTGAAA+TGG 0.432612 tig0021785:-96039 None:intergenic
GTTTATAATGCTACAGCAAC+AGG 0.436701 tig0021785:+96560 Msa1394250:CDS
GATCATGAGCAATACGGAAA+TGG 0.442149 tig0021785:-95997 None:intergenic
AAATCGTATGGATACGGTCT+TGG 0.446811 tig0021785:-95347 None:intergenic
TTGTGGTAGGCCCCGTTCCT+GGG 0.450790 tig0021785:+96390 Msa1394250:CDS
TTATTACTCTTGCTCCCGTC+GGG 0.465288 tig0021785:-96533 None:intergenic
ATATGTTTCCTTATTCTAAG+TGG 0.468100 tig0021785:+95390 Msa1394250:CDS
TACAGAAATGCAAAATCGTA+TGG 0.481344 tig0021785:-95359 None:intergenic
ACTGCTTCAAATACAGTATC+GGG 0.488265 tig0021785:-96173 None:intergenic
AAAAGCATTTCTAGTTTGCA+TGG 0.489913 tig0021785:-95946 None:intergenic
TGGATACGAAATAACGATAG+TGG 0.491690 tig0021785:+96616 Msa1394250:CDS
AACTGCTTCAAATACAGTAT+CGG 0.494328 tig0021785:-96174 None:intergenic
ATTTCACTATATTTCTTCCC+AGG 0.497196 tig0021785:-96407 None:intergenic
ATGGGATATGCATTTGAAAT+GGG 0.502392 tig0021785:-96038 None:intergenic
GAGCAATACGGAAATGGATC+GGG 0.505456 tig0021785:-95991 None:intergenic
CAAGATCCGTTACGTGTACA+AGG 0.506414 tig0021785:+96788 Msa1394250:CDS
TATATAGATCATGAGCAATA+CGG 0.512581 tig0021785:-96003 None:intergenic
ATCCGCCCGGTAGCTTCTCT+CGG 0.516777 tig0021785:-96086 None:intergenic
AATATCCTATATACGTAGGC+GGG 0.517081 tig0021785:+96486 Msa1394250:CDS
TAATAAGCCTGTAGATATTG+AGG 0.521759 tig0021785:+96133 Msa1394250:CDS
ATGTGGGTGGATTTGGTCAG+GGG 0.523100 tig0021785:+96747 Msa1394250:CDS
TGTGGAACCTCAATATCTAC+AGG 0.524236 tig0021785:-96140 None:intergenic
ATTATTACTCTTGCTCCCGT+CGG 0.527873 tig0021785:-96534 None:intergenic
CCAGAACTTCTTGTTTCAGA+GGG 0.530598 tig0021785:+96683 Msa1394250:CDS
ACTATATTTCTTCCCAGGAA+CGG 0.533921 tig0021785:-96402 None:intergenic
AATGTGGGTGGATTTGGTCA+GGG 0.534197 tig0021785:+96746 Msa1394250:CDS
ATCTCGGGCGAAATACGATC+AGG 0.534200 tig0021785:-96308 None:intergenic
CTAAGTGGTTATTCTATTAG+GGG 0.545375 tig0021785:+95405 Msa1394250:CDS
GAAACAAGAAGTTCTGGTCC+TGG 0.545439 tig0021785:-96677 None:intergenic
GCGGGATCTGGAGAAAGAAT+AGG 0.547213 tig0021785:-96437 None:intergenic
GTAGGCGGGAATAGGGGAAG+GGG 0.547797 tig0021785:+96500 Msa1394250:CDS
AATGCAAAATCGTATGGATA+CGG 0.548969 tig0021785:-95353 None:intergenic
GTGAACATCTCTCTTAGTAG+CGG 0.549431 tig0021785:-96456 None:intergenic
ACCAGAACTTCTTGTTTCAG+AGG 0.553828 tig0021785:+96682 Msa1394250:CDS
AAAATCCGAGAGAAGCTACC+GGG 0.554646 tig0021785:+96081 Msa1394250:CDS
TGAGCAATACGGAAATGGAT+CGG 0.555873 tig0021785:-95992 None:intergenic
GTGATTGATATTATACCGCC+AGG 0.566218 tig0021785:+96659 Msa1394250:CDS
TGAACATCTCTCTTAGTAGC+GGG 0.566429 tig0021785:-96455 None:intergenic
ATTAACGAGTAATCCTAATG+TGG 0.573726 tig0021785:+96730 Msa1394250:CDS
GGGGCCAATTCAAAACCCTC+TGG 0.574508 tig0021785:-96284 None:intergenic
GGGGTCAGATTTATCCCGAC+GGG 0.575656 tig0021785:+96519 Msa1394250:CDS
ACGTAGGCGGGAATAGGGGA+AGG 0.589088 tig0021785:+96498 Msa1394250:CDS
ACGATAGTGGATGCATCGGA+TGG 0.592008 tig0021785:+96629 Msa1394250:CDS
ATCTGGAGAAAGAATAGGAA+AGG 0.599901 tig0021785:-96432 None:intergenic
AACAGACCTTGTACACGTAA+CGG 0.600684 tig0021785:-96794 None:intergenic
GAAAATCCGAGAGAAGCTAC+CGG 0.606144 tig0021785:+96080 Msa1394250:CDS
TGTGGGTGGATTTGGTCAGG+GGG 0.611690 tig0021785:+96748 Msa1394250:CDS
AAATATCCTATATACGTAGG+CGG 0.616381 tig0021785:+96485 Msa1394250:CDS
TTAAAATATCCTATATACGT+AGG 0.623794 tig0021785:+96482 Msa1394250:CDS
ACGAGTAATCCTAATGTGGG+TGG 0.626177 tig0021785:+96734 Msa1394250:CDS
TCGGGCGAAATACGATCAGG+AGG 0.629985 tig0021785:-96305 None:intergenic
ATTAGCACATACAATCCGCC+CGG 0.633238 tig0021785:-96099 None:intergenic
AATAACGATAGTGGATGCAT+CGG 0.634066 tig0021785:+96625 Msa1394250:CDS
TATATTTCTTCCCAGGAACG+GGG 0.637585 tig0021785:-96400 None:intergenic
ATATACGTAGGCGGGAATAG+GGG 0.641009 tig0021785:+96494 Msa1394250:CDS
CGTAGGCGGGAATAGGGGAA+GGG 0.650670 tig0021785:+96499 Msa1394250:CDS
TTAACGAGTAATCCTAATGT+GGG 0.652400 tig0021785:+96731 Msa1394250:CDS
AGATATTGAGGTTCCACAAG+CGG 0.653295 tig0021785:+96145 Msa1394250:CDS
CGGGCGAAATACGATCAGGA+GGG 0.656521 tig0021785:-96304 None:intergenic
GGGCGAAATACGATCAGGAG+GGG 0.658846 tig0021785:-96303 None:intergenic
AGGGGTCAGATTTATCCCGA+CGG 0.672516 tig0021785:+96518 Msa1394250:CDS
GTATCGGGAAGTACCGCTTG+TGG 0.687149 tig0021785:-96158 None:intergenic
ACAAGAAGTTCTGGTCCTGG+CGG 0.692543 tig0021785:-96674 None:intergenic
ATCCGAGAGAAGCTACCGGG+CGG 0.767274 tig0021785:+96084 Msa1394250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATAAATCAGTTAATAAA+AGG - tig0021785:95512-95531 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG + tig0021785:95513-95532 Msa1394250:intron 15.0%
!!! TAGATACAATTTTAAAATAC+TGG + tig0021785:95649-95668 Msa1394250:intron 15.0%
!! AAAATTTCTACAATAAGATT+AGG - tig0021785:95909-95928 None:intergenic 15.0%
!!! ACAAGAATATTTTTTTTTGT+GGG - tig0021785:96374-96393 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG + tig0021785:96593-96612 Msa1394250:CDS 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG + tig0021785:96862-96881 Msa1394250:CDS 15.0%
!! TACATAAATCAGTTAATAAA+AGG - tig0021785:95512-95531 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG + tig0021785:95513-95532 Msa1394250:intron 15.0%
!!! TAGATACAATTTTAAAATAC+TGG + tig0021785:95649-95668 Msa1394250:intron 15.0%
!! AAAATTTCTACAATAAGATT+AGG - tig0021785:95909-95928 None:intergenic 15.0%
!!! ACAAGAATATTTTTTTTTGT+GGG - tig0021785:96374-96393 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG + tig0021785:96593-96612 Msa1394250:CDS 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG + tig0021785:96862-96881 Msa1394250:CDS 15.0%
!!! AAAATTGTATCTAAAATGAC+TGG - tig0021785:95642-95661 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG - tig0021785:95750-95769 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG - tig0021785:95841-95860 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG + tig0021785:95910-95929 Msa1394250:intron 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG - tig0021785:96327-96346 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG - tig0021785:96375-96394 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG + tig0021785:96373-96392 Msa1394250:CDS 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG + tig0021785:96377-96396 Msa1394250:CDS 20.0%
!! TTAAAATATCCTATATACGT+AGG + tig0021785:96482-96501 Msa1394250:CDS 20.0%
!!! AAAATTGTATCTAAAATGAC+TGG - tig0021785:95642-95661 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG - tig0021785:95750-95769 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG - tig0021785:95841-95860 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG + tig0021785:95910-95929 Msa1394250:intron 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG - tig0021785:96327-96346 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG - tig0021785:96375-96394 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG + tig0021785:96373-96392 Msa1394250:CDS 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG + tig0021785:96377-96396 Msa1394250:CDS 20.0%
!! TTAAAATATCCTATATACGT+AGG + tig0021785:96482-96501 Msa1394250:CDS 20.0%
! ATATGTTTCCTTATTCTAAG+TGG + tig0021785:95390-95409 Msa1394250:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG - tig0021785:95401-95420 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG + tig0021785:95403-95422 Msa1394250:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG + tig0021785:95404-95423 Msa1394250:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG + tig0021785:95436-95455 Msa1394250:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG + tig0021785:95437-95456 Msa1394250:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG + tig0021785:95600-95619 Msa1394250:intron 25.0%
! GAGATACACGATTTAAATAA+CGG - tig0021785:95680-95699 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG + tig0021785:95859-95878 Msa1394250:intron 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG + tig0021785:95864-95883 Msa1394250:intron 25.0%
!!! AAATAGCAGAATAATGGATA+GGG + tig0021785:95865-95884 Msa1394250:intron 25.0%
! TTTCTACAATAAGATTAGGT+AGG - tig0021785:95905-95924 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG + tig0021785:95922-95941 Msa1394250:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG + tig0021785:95952-95971 Msa1394250:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG + tig0021785:95959-95978 Msa1394250:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG - tig0021785:96006-96025 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG - tig0021785:96209-96228 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG + tig0021785:96231-96250 Msa1394250:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG - tig0021785:96326-96345 None:intergenic 25.0%
! ATTATACGAAAAGAAAAAGG+TGG + tig0021785:96596-96615 Msa1394250:CDS 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG + tig0021785:96835-96854 Msa1394250:CDS 25.0%
! ATATGTTTCCTTATTCTAAG+TGG + tig0021785:95390-95409 Msa1394250:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG - tig0021785:95401-95420 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG + tig0021785:95403-95422 Msa1394250:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG + tig0021785:95404-95423 Msa1394250:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG + tig0021785:95436-95455 Msa1394250:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG + tig0021785:95437-95456 Msa1394250:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG + tig0021785:95600-95619 Msa1394250:intron 25.0%
! GAGATACACGATTTAAATAA+CGG - tig0021785:95680-95699 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG + tig0021785:95859-95878 Msa1394250:intron 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG + tig0021785:95864-95883 Msa1394250:intron 25.0%
!!! AAATAGCAGAATAATGGATA+GGG + tig0021785:95865-95884 Msa1394250:intron 25.0%
! TTTCTACAATAAGATTAGGT+AGG - tig0021785:95905-95924 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG + tig0021785:95922-95941 Msa1394250:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG + tig0021785:95952-95971 Msa1394250:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG + tig0021785:95959-95978 Msa1394250:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG - tig0021785:96006-96025 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG - tig0021785:96209-96228 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG + tig0021785:96231-96250 Msa1394250:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG - tig0021785:96326-96345 None:intergenic 25.0%
! ATTATACGAAAAGAAAAAGG+TGG + tig0021785:96596-96615 Msa1394250:CDS 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG + tig0021785:96835-96854 Msa1394250:CDS 25.0%
AATGCAAAATCGTATGGATA+CGG - tig0021785:95356-95375 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG - tig0021785:95362-95381 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG + tig0021785:95405-95424 Msa1394250:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG - tig0021785:95634-95653 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG - tig0021785:95702-95721 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG + tig0021785:95828-95847 Msa1394250:intron 30.0%
AATAAGATTAGGTAGGTTAC+TGG - tig0021785:95898-95917 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG - tig0021785:95949-95968 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG - tig0021785:96041-96060 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG - tig0021785:96042-96061 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG + tig0021785:96133-96152 Msa1394250:CDS 30.0%
AACTGCTTCAAATACAGTAT+CGG - tig0021785:96177-96196 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG + tig0021785:96221-96240 Msa1394250:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG + tig0021785:96230-96249 Msa1394250:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG + tig0021785:96232-96251 Msa1394250:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG + tig0021785:96323-96342 Msa1394250:CDS 30.0%
ATTTCACTATATTTCTTCCC+AGG - tig0021785:96410-96429 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG + tig0021785:96485-96504 Msa1394250:CDS 30.0%
ACATTAGGATTACTCGTTAA+TGG - tig0021785:96731-96750 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG + tig0021785:96730-96749 Msa1394250:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG + tig0021785:96731-96750 Msa1394250:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG + tig0021785:96820-96839 Msa1394250:CDS 30.0%
AATGCAAAATCGTATGGATA+CGG - tig0021785:95356-95375 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG - tig0021785:95362-95381 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG + tig0021785:95405-95424 Msa1394250:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG - tig0021785:95634-95653 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG - tig0021785:95702-95721 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG + tig0021785:95828-95847 Msa1394250:intron 30.0%
AATAAGATTAGGTAGGTTAC+TGG - tig0021785:95898-95917 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG - tig0021785:95949-95968 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG - tig0021785:96041-96060 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG - tig0021785:96042-96061 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG + tig0021785:96133-96152 Msa1394250:CDS 30.0%
AACTGCTTCAAATACAGTAT+CGG - tig0021785:96177-96196 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG + tig0021785:96221-96240 Msa1394250:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG + tig0021785:96230-96249 Msa1394250:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG + tig0021785:96232-96251 Msa1394250:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG + tig0021785:96323-96342 Msa1394250:CDS 30.0%
ATTTCACTATATTTCTTCCC+AGG - tig0021785:96410-96429 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG + tig0021785:96485-96504 Msa1394250:CDS 30.0%
ACATTAGGATTACTCGTTAA+TGG - tig0021785:96731-96750 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG + tig0021785:96730-96749 Msa1394250:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG + tig0021785:96731-96750 Msa1394250:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG + tig0021785:96820-96839 Msa1394250:CDS 30.0%
ATAGGATTCCATTCAACTCA+TGG + tig0021785:95531-95550 Msa1394250:intron 35.0%
ATTCCATTCAACTCATGGTT+GGG + tig0021785:95536-95555 Msa1394250:intron 35.0%
ATGGTTGGGAACTAATGATT+GGG + tig0021785:95550-95569 Msa1394250:intron 35.0%
! GGGTCTGTCTATAAAGATTT+TGG + tig0021785:95570-95589 Msa1394250:intron 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG + tig0021785:96052-96071 Msa1394250:CDS 35.0%
!! TATCCCATTTTTGCTCAACA+GGG + tig0021785:96053-96072 Msa1394250:CDS 35.0%
TAACCCTGTTGAGCAAAAAT+GGG - tig0021785:96059-96078 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG - tig0021785:96060-96079 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG - tig0021785:96127-96146 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG - tig0021785:96176-96195 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG + tig0021785:96245-96264 Msa1394250:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG + tig0021785:96268-96287 Msa1394250:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG + tig0021785:96269-96288 Msa1394250:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG + tig0021785:96280-96299 Msa1394250:CDS 35.0%
ACTATATTTCTTCCCAGGAA+CGG - tig0021785:96405-96424 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG - tig0021785:96435-96454 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG + tig0021785:96486-96505 Msa1394250:CDS 35.0%
GTTTATAATGCTACAGCAAC+AGG + tig0021785:96560-96579 Msa1394250:CDS 35.0%
TGGATACGAAATAACGATAG+TGG + tig0021785:96616-96635 Msa1394250:CDS 35.0%
!! AATAACGATAGTGGATGCAT+CGG + tig0021785:96625-96644 Msa1394250:CDS 35.0%
ATAGGATTCCATTCAACTCA+TGG + tig0021785:95531-95550 Msa1394250:intron 35.0%
ATTCCATTCAACTCATGGTT+GGG + tig0021785:95536-95555 Msa1394250:intron 35.0%
ATGGTTGGGAACTAATGATT+GGG + tig0021785:95550-95569 Msa1394250:intron 35.0%
! GGGTCTGTCTATAAAGATTT+TGG + tig0021785:95570-95589 Msa1394250:intron 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG + tig0021785:96052-96071 Msa1394250:CDS 35.0%
!! TATCCCATTTTTGCTCAACA+GGG + tig0021785:96053-96072 Msa1394250:CDS 35.0%
TAACCCTGTTGAGCAAAAAT+GGG - tig0021785:96059-96078 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG - tig0021785:96060-96079 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG - tig0021785:96127-96146 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG - tig0021785:96176-96195 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG + tig0021785:96245-96264 Msa1394250:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG + tig0021785:96268-96287 Msa1394250:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG + tig0021785:96269-96288 Msa1394250:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG + tig0021785:96280-96299 Msa1394250:CDS 35.0%
ACTATATTTCTTCCCAGGAA+CGG - tig0021785:96405-96424 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG - tig0021785:96435-96454 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG + tig0021785:96486-96505 Msa1394250:CDS 35.0%
GTTTATAATGCTACAGCAAC+AGG + tig0021785:96560-96579 Msa1394250:CDS 35.0%
TGGATACGAAATAACGATAG+TGG + tig0021785:96616-96635 Msa1394250:CDS 35.0%
!! AATAACGATAGTGGATGCAT+CGG + tig0021785:96625-96644 Msa1394250:CDS 35.0%
GGTTGTTCGTCTCTATCAAT+TGG - tig0021785:95329-95348 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG - tig0021785:95350-95369 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG + tig0021785:95535-95554 Msa1394250:intron 40.0%
CATGGTTGGGAACTAATGAT+TGG + tig0021785:95549-95568 Msa1394250:intron 40.0%
TGAGCAATACGGAAATGGAT+CGG - tig0021785:95995-96014 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG - tig0021785:96000-96019 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG - tig0021785:96143-96162 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG + tig0021785:96145-96164 Msa1394250:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG - tig0021785:96403-96422 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG - tig0021785:96404-96423 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG - tig0021785:96458-96477 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG - tig0021785:96459-96478 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG + tig0021785:96493-96512 Msa1394250:CDS 40.0%
ATTATTACTCTTGCTCCCGT+CGG - tig0021785:96537-96556 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG + tig0021785:96659-96678 Msa1394250:CDS 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG + tig0021785:96682-96701 Msa1394250:CDS 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG + tig0021785:96683-96702 Msa1394250:CDS 40.0%
! AATCCTAATGTGGGTGGATT+TGG + tig0021785:96740-96759 Msa1394250:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG - tig0021785:96797-96816 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG + tig0021785:96805-96824 Msa1394250:CDS 40.0%
GGTTGTTCGTCTCTATCAAT+TGG - tig0021785:95329-95348 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG - tig0021785:95350-95369 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG + tig0021785:95535-95554 Msa1394250:intron 40.0%
CATGGTTGGGAACTAATGAT+TGG + tig0021785:95549-95568 Msa1394250:intron 40.0%
TGAGCAATACGGAAATGGAT+CGG - tig0021785:95995-96014 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG - tig0021785:96000-96019 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG - tig0021785:96143-96162 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG + tig0021785:96145-96164 Msa1394250:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG - tig0021785:96403-96422 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG - tig0021785:96404-96423 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG - tig0021785:96458-96477 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG - tig0021785:96459-96478 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG + tig0021785:96493-96512 Msa1394250:CDS 40.0%
ATTATTACTCTTGCTCCCGT+CGG - tig0021785:96537-96556 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG + tig0021785:96659-96678 Msa1394250:CDS 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG + tig0021785:96682-96701 Msa1394250:CDS 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG + tig0021785:96683-96702 Msa1394250:CDS 40.0%
! AATCCTAATGTGGGTGGATT+TGG + tig0021785:96740-96759 Msa1394250:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG - tig0021785:96797-96816 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG + tig0021785:96805-96824 Msa1394250:CDS 40.0%
! GTTCCCAACCATGAGTTGAA+TGG - tig0021785:95542-95561 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG - tig0021785:95994-96013 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG + tig0021785:96080-96099 Msa1394250:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG + tig0021785:96081-96100 Msa1394250:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG - tig0021785:96102-96121 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG - tig0021785:96494-96513 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG + tig0021785:96492-96511 Msa1394250:CDS 45.0%
ATATACGTAGGCGGGAATAG+GGG + tig0021785:96494-96513 Msa1394250:CDS 45.0%
TTATTACTCTTGCTCCCGTC+GGG - tig0021785:96536-96555 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG - tig0021785:96680-96699 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG - tig0021785:96686-96705 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG + tig0021785:96734-96753 Msa1394250:CDS 45.0%
TGACCAAATCCACCCACATT+AGG - tig0021785:96746-96765 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG + tig0021785:96745-96764 Msa1394250:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG + tig0021785:96746-96765 Msa1394250:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG + tig0021785:96788-96807 Msa1394250:CDS 45.0%
! GTTCCCAACCATGAGTTGAA+TGG - tig0021785:95542-95561 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG - tig0021785:95994-96013 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG + tig0021785:96080-96099 Msa1394250:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG + tig0021785:96081-96100 Msa1394250:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG - tig0021785:96102-96121 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG - tig0021785:96494-96513 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG + tig0021785:96492-96511 Msa1394250:CDS 45.0%
ATATACGTAGGCGGGAATAG+GGG + tig0021785:96494-96513 Msa1394250:CDS 45.0%
TTATTACTCTTGCTCCCGTC+GGG - tig0021785:96536-96555 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG - tig0021785:96680-96699 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG - tig0021785:96686-96705 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG + tig0021785:96734-96753 Msa1394250:CDS 45.0%
TGACCAAATCCACCCACATT+AGG - tig0021785:96746-96765 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG + tig0021785:96745-96764 Msa1394250:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG + tig0021785:96746-96765 Msa1394250:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG + tig0021785:96788-96807 Msa1394250:CDS 45.0%
!!! AAAAAAACAAATTTTATAAT+TGG - tig0021785:95758-95777 None:intergenic 5.0%
!!! AAAAAAACAAATTTTATAAT+TGG - tig0021785:95758-95777 None:intergenic 5.0%
ATCTCGGGCGAAATACGATC+AGG - tig0021785:96311-96330 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG - tig0021785:96440-96459 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG - tig0021785:96452-96471 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG + tig0021785:96518-96537 Msa1394250:CDS 50.0%
!! ACGATAGTGGATGCATCGGA+TGG + tig0021785:96629-96648 Msa1394250:CDS 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG - tig0021785:96677-96696 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG + tig0021785:96747-96766 Msa1394250:CDS 50.0%
ATCTCGGGCGAAATACGATC+AGG - tig0021785:96311-96330 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG - tig0021785:96440-96459 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG - tig0021785:96452-96471 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG + tig0021785:96518-96537 Msa1394250:CDS 50.0%
!! ACGATAGTGGATGCATCGGA+TGG + tig0021785:96629-96648 Msa1394250:CDS 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG - tig0021785:96677-96696 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG + tig0021785:96747-96766 Msa1394250:CDS 50.0%
!! GTATCGGGAAGTACCGCTTG+TGG - tig0021785:96161-96180 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG - tig0021785:96287-96306 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG - tig0021785:96306-96325 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG - tig0021785:96307-96326 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG - tig0021785:96308-96327 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG + tig0021785:96519-96538 Msa1394250:CDS 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG + tig0021785:96748-96767 Msa1394250:CDS 55.0%
!! GTATCGGGAAGTACCGCTTG+TGG - tig0021785:96161-96180 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG - tig0021785:96287-96306 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG - tig0021785:96306-96325 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG - tig0021785:96307-96326 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG - tig0021785:96308-96327 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG + tig0021785:96519-96538 Msa1394250:CDS 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG + tig0021785:96748-96767 Msa1394250:CDS 55.0%
ATCCGAGAGAAGCTACCGGG+CGG + tig0021785:96084-96103 Msa1394250:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG - tig0021785:96089-96108 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG + tig0021785:96390-96409 Msa1394250:CDS 60.0%
ACGTAGGCGGGAATAGGGGA+AGG + tig0021785:96498-96517 Msa1394250:CDS 60.0%
CGTAGGCGGGAATAGGGGAA+GGG + tig0021785:96499-96518 Msa1394250:CDS 60.0%
GTAGGCGGGAATAGGGGAAG+GGG + tig0021785:96500-96519 Msa1394250:CDS 60.0%
ATCCGAGAGAAGCTACCGGG+CGG + tig0021785:96084-96103 Msa1394250:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG - tig0021785:96089-96108 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG + tig0021785:96390-96409 Msa1394250:CDS 60.0%
ACGTAGGCGGGAATAGGGGA+AGG + tig0021785:96498-96517 Msa1394250:CDS 60.0%
CGTAGGCGGGAATAGGGGAA+GGG + tig0021785:96499-96518 Msa1394250:CDS 60.0%
GTAGGCGGGAATAGGGGAAG+GGG + tig0021785:96500-96519 Msa1394250:CDS 60.0%
CTTGTGGTAGGCCCCGTTCC+TGG + tig0021785:96389-96408 Msa1394250:CDS 65.0%
CTTGTGGTAGGCCCCGTTCC+TGG + tig0021785:96389-96408 Msa1394250:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0021785 gene 95303 96910 95303 ID=Msa1394250;Name=Msa1394250
tig0021785 mRNA 95303 96910 95303 ID=Msa1394250-mRNA-1;Parent=Msa1394250;Name=Msa1394250-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|0|0|2|0|389
tig0021785 exon 95303 95483 95303 ID=Msa1394250-mRNA-1:exon:14230;Parent=Msa1394250-mRNA-1
tig0021785 exon 95922 96910 95922 ID=Msa1394250-mRNA-1:exon:14231;Parent=Msa1394250-mRNA-1
tig0021785 CDS 95303 95483 95303 ID=Msa1394250-mRNA-1:cds;Parent=Msa1394250-mRNA-1
tig0021785 CDS 95922 96910 95922 ID=Msa1394250-mRNA-1:cds;Parent=Msa1394250-mRNA-1
Gene Sequence

>Msa1394250

ATGGAAATCTACAAAGAAAGCATCCAATTGATAGAGACGAACAACCAAGACCGTATCCATACGATTTTGCATTTCTGTACAAATATAATATGTTTCCTTATTCTAAGTGGTTATTCTATTAGGGGTAATCAAGAACTCATTATTCTTAACTCTTGGGTTCAAGAATTTCTATATAACTTAAAAATTTTCAGGATGAATGATTGGACCATGCAAACTAGAAATGCTTTTTCTTGGATAAAGGAAGAGATTACCCGATCCATTTCCGTATTGCTCATGATCTATATAATAACTCGAGCACCCATTTCAAATGCATATCCCATTTTTGCTCAACAGGGTTATGAAAATCCGAGAGAAGCTACCGGGCGGATTGTATGTGCTAATTGCCATTTAGCTAATAAGCCTGTAGATATTGAGGTTCCACAAGCGGTACTTCCCGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAAGTTAAACAAGTTCTTGCTAATGGTAAAAAAGGGGCTTTGAATGTAGGTGCTGTTCTTATTTTACCAGAGGGTTTTGAATTGGCCCCTCCTGATCGTATTTCGCCCGAGATTAAAGAAAAAATAGGTAATTTGTCTTTTCAAAGCTATCGTCCCACAAAAAAAAATATTCTTGTGGTAGGCCCCGTTCCTGGGAAGAAATATAGTGAAATTACCTTTCCTATTCTTTCTCCAGATCCCGCTACTAAGAGAGATGTTCACTTCTTAAAATATCCTATATACGTAGGCGGGAATAGGGGAAGGGGTCAGATTTATCCCGACGGGAGCAAGAGTAATAATAATGTTTATAATGCTACAGCAACAGGTATAGTAAATAAAATTATACGAAAAGAAAAAGGTGGATACGAAATAACGATAGTGGATGCATCGGATGGACGTGAAGTGATTGATATTATACCGCCAGGACCAGAACTTCTTGTTTCAGAGGGTGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGTGGATTTGGTCAGGGGGATGCAGAAATAGTGCTTCAAGATCCGTTACGTGTACAAGGTCTGTTGTTCTTCTTGGCATCTATTATTTTGGCACAAATCTTTTTGGTTCTTAAAAAGAAACAATTTGAAAAGGTTCAATTGTCCGAAATGAATTTTTAG

Protein sequence

>Msa1394250

MEIYKESIQLIETNNQDRIHTILHFCTNIICFLILSGYSIRGNQELIILNSWVQEFLYNLKIFRMNDWTMQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQVKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEIKEKIGNLSFQSYRPTKKNILVVGPVPGKKYSEITFPILSPDPATKRDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATATGIVNKIIRKEKGGYEITIVDASDGREVIDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASIILAQIFLVLKKKQFEKVQLSEMNF*