AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0582840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0582840 MtrunA17_CPg0492851 87.385 325 1 2 65 349 1 325 0.0 557
Msa0582840 MtrunA17_Chr4g0015731 87.385 325 1 2 65 349 1 325 0.0 557
Msa0582840 MtrunA17_Chr4g0016821 87.385 325 1 2 65 349 1 325 0.0 557
Msa0582840 MtrunA17_Chr4g0016981 76.596 94 3 2 108 197 42 120 6.72e-40 137
Msa0582840 MtrunA17_Chr4g0016991 95.385 65 3 0 285 349 1 65 1.85e-36 126
Msa0582840 MtrunA17_Chr5g0403621 96.667 60 2 0 1 60 86 145 2.84e-35 126
Msa0582840 MtrunA17_CPg0492871 98.333 60 1 0 1 60 86 145 1.54e-34 126
Msa0582840 MtrunA17_Chr4g0015721 98.333 60 1 0 1 60 86 145 1.54e-34 126
Msa0582840 MtrunA17_Chr4g0016811 98.333 60 1 0 1 60 95 154 1.66e-34 126
Msa0582840 MtrunA17_Chr3g0141111 94.737 57 3 0 1 57 15 71 1.55e-32 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0582840 ATCG00540.1 79.688 320 25 2 70 349 1 320 1.61e-178 498
Msa0582840 ATCG00530.1 67.241 58 19 0 3 60 88 145 1.61e-18 84.0

Find 76 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTGGCATCTATTATTT+TGG 0.108321 4_2:+1262395 Msa0582840:CDS
TTCTAAGTGGTTATTCTATT+AGG 0.170612 4_2:+1260979 Msa0582840:CDS
ACAAGGTCTGTTGTTCTTCT+TGG 0.210830 4_2:+1262380 Msa0582840:CDS
TCTAAGTGGTTATTCTATTA+GGG 0.213858 4_2:+1260980 Msa0582840:CDS
ACATTAGGATTACTCGTTAA+TGG 0.226644 4_2:-1262303 None:intergenic
TAGAATAACCACTTAGAATA+AGG 0.296044 4_2:-1260974 None:intergenic
CTACAGGCTTATTAGCTAAA+TGG 0.299374 4_2:-1261700 None:intergenic
CTATATACGTAGGCGGGAAT+AGG 0.308836 4_2:+1262067 Msa0582840:CDS
AATCCTAATGTGGGTGGATT+TGG 0.318985 4_2:+1262315 Msa0582840:CDS
AACTCATTATTCTTAACTCT+TGG 0.323937 4_2:+1261012 Msa0582840:CDS
AAAATTATACGAAAAGAAAA+AGG 0.339453 4_2:+1262168 Msa0582840:CDS
TATATACGTAGGCGGGAATA+GGG 0.340058 4_2:+1262068 Msa0582840:CDS
CTATTCCCGCCTACGTATAT+AGG 0.341092 4_2:-1262066 None:intergenic
GTTAAACAAGTTCTTGCTAA+TGG 0.346567 4_2:+1261797 Msa0582840:CDS
GGTTGTTCGTCTCTATCAAT+TGG 0.367131 4_2:-1260902 None:intergenic
CCCTCTGAAACAAGAAGTTC+TGG 0.373836 4_2:-1262258 None:intergenic
TAATGTGGGTGGATTTGGTC+AGG 0.386047 4_2:+1262320 Msa0582840:CDS
TGACCAAATCCACCCACATT+AGG 0.412065 4_2:-1262318 None:intergenic
TGTTTAACTTGCATATCATA+AGG 0.412925 4_2:-1261782 None:intergenic
ACTCATTATTCTTAACTCTT+GGG 0.414290 4_2:+1261013 Msa0582840:CDS
AATGGGATATGCATTTGAAA+TGG 0.432612 4_2:-1261615 None:intergenic
GTTTATAATGCTACAGCAAC+AGG 0.436701 4_2:+1262135 Msa0582840:CDS
GATCATGAGCAATACGGAAA+TGG 0.442149 4_2:-1261573 None:intergenic
AAATCGTATGGATACGGTCT+TGG 0.446811 4_2:-1260923 None:intergenic
TTATTACTCTTGCTCCCGTC+GGG 0.465288 4_2:-1262108 None:intergenic
ATATGTTTCCTTATTCTAAG+TGG 0.468100 4_2:+1260966 Msa0582840:CDS
TACAGAAATGCAAAATCGTA+TGG 0.481344 4_2:-1260935 None:intergenic
ACTGCTTCAAATACAGTATC+GGG 0.488265 4_2:-1261749 None:intergenic
AAAAGCATTTCTAGTTTGCA+TGG 0.489913 4_2:-1261522 None:intergenic
TGGATACGAAATAACGATAG+TGG 0.491690 4_2:+1262191 Msa0582840:CDS
AACTGCTTCAAATACAGTAT+CGG 0.494328 4_2:-1261750 None:intergenic
ATGGGATATGCATTTGAAAT+GGG 0.502392 4_2:-1261614 None:intergenic
GAGCAATACGGAAATGGATC+GGG 0.505456 4_2:-1261567 None:intergenic
CAAGATCCGTTACGTGTACA+AGG 0.506414 4_2:+1262363 Msa0582840:CDS
TATATAGATCATGAGCAATA+CGG 0.512581 4_2:-1261579 None:intergenic
ATCCGCCCGGTAGCTTCTCT+CGG 0.516777 4_2:-1261662 None:intergenic
AATATCCTATATACGTAGGC+GGG 0.517081 4_2:+1262061 Msa0582840:CDS
ATGTGGGTGGATTTGGTCAG+GGG 0.523100 4_2:+1262322 Msa0582840:CDS
ATTATTACTCTTGCTCCCGT+CGG 0.527873 4_2:-1262109 None:intergenic
CCAGAACTTCTTGTTTCAGA+GGG 0.530598 4_2:+1262258 Msa0582840:CDS
AATGTGGGTGGATTTGGTCA+GGG 0.534197 4_2:+1262321 Msa0582840:CDS
ATCTCGGGCGAAATACGATC+AGG 0.534200 4_2:-1261884 None:intergenic
CTAAGTGGTTATTCTATTAG+GGG 0.545375 4_2:+1260981 Msa0582840:CDS
GAAACAAGAAGTTCTGGTCC+TGG 0.545439 4_2:-1262252 None:intergenic
GTAGGCGGGAATAGGGGAAG+GGG 0.547797 4_2:+1262075 Msa0582840:CDS
AATGCAAAATCGTATGGATA+CGG 0.548969 4_2:-1260929 None:intergenic
GTGAACATCTCTCTTAGTAG+CGG 0.549431 4_2:-1262031 None:intergenic
ACCAGAACTTCTTGTTTCAG+AGG 0.553828 4_2:+1262257 Msa0582840:CDS
AAAATCCGAGAGAAGCTACC+GGG 0.554646 4_2:+1261657 Msa0582840:CDS
TGAGCAATACGGAAATGGAT+CGG 0.555873 4_2:-1261568 None:intergenic
GTGATTGATATTATACCGCC+AGG 0.566218 4_2:+1262234 Msa0582840:CDS
TGAACATCTCTCTTAGTAGC+GGG 0.566429 4_2:-1262030 None:intergenic
ATTAACGAGTAATCCTAATG+TGG 0.573726 4_2:+1262305 Msa0582840:CDS
GGGGCCAATTCAAAACCCTC+TGG 0.574508 4_2:-1261860 None:intergenic
GGGGTCAGATTTATCCCGAC+GGG 0.575656 4_2:+1262094 Msa0582840:CDS
ACGTAGGCGGGAATAGGGGA+AGG 0.589088 4_2:+1262073 Msa0582840:CDS
ACGATAGTGGATGCATCGGA+TGG 0.592008 4_2:+1262204 Msa0582840:CDS
AACAGACCTTGTACACGTAA+CGG 0.600684 4_2:-1262369 None:intergenic
GAAAATCCGAGAGAAGCTAC+CGG 0.606144 4_2:+1261656 Msa0582840:CDS
TGTGGGTGGATTTGGTCAGG+GGG 0.611690 4_2:+1262323 Msa0582840:CDS
AAATATCCTATATACGTAGG+CGG 0.616381 4_2:+1262060 Msa0582840:CDS
TTAAAATATCCTATATACGT+AGG 0.623794 4_2:+1262057 Msa0582840:CDS
ACGAGTAATCCTAATGTGGG+TGG 0.626177 4_2:+1262309 Msa0582840:CDS
TCGGGCGAAATACGATCAGG+AGG 0.629985 4_2:-1261881 None:intergenic
ATTAGCACATACAATCCGCC+CGG 0.633238 4_2:-1261675 None:intergenic
AATAACGATAGTGGATGCAT+CGG 0.634066 4_2:+1262200 Msa0582840:CDS
ATATACGTAGGCGGGAATAG+GGG 0.641009 4_2:+1262069 Msa0582840:CDS
CGTAGGCGGGAATAGGGGAA+GGG 0.650670 4_2:+1262074 Msa0582840:CDS
TTAACGAGTAATCCTAATGT+GGG 0.652400 4_2:+1262306 Msa0582840:CDS
AGATATTGAGGTTCCACAAG+CGG 0.653295 4_2:+1261721 Msa0582840:intron
CGGGCGAAATACGATCAGGA+GGG 0.656521 4_2:-1261880 None:intergenic
GGGCGAAATACGATCAGGAG+GGG 0.658846 4_2:-1261879 None:intergenic
AGGGGTCAGATTTATCCCGA+CGG 0.672516 4_2:+1262093 Msa0582840:CDS
GTATCGGGAAGTACCGCTTG+TGG 0.687149 4_2:-1261734 None:intergenic
ACAAGAAGTTCTGGTCCTGG+CGG 0.692543 4_2:-1262249 None:intergenic
ATCCGAGAGAAGCTACCGGG+CGG 0.767274 4_2:+1261660 Msa0582840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATAAATCAGTTAATAAA+AGG - chr4_2:1261088-1261107 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG + chr4_2:1261089-1261108 Msa0582840:intron 15.0%
!!! TAGATACAATTTTAAAATAC+TGG + chr4_2:1261225-1261244 Msa0582840:intron 15.0%
!! AAAATTTCTACAATAAGATT+AGG - chr4_2:1261485-1261504 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG + chr4_2:1262168-1262187 Msa0582840:CDS 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG + chr4_2:1262437-1262456 Msa0582840:CDS 15.0%
!! TACATAAATCAGTTAATAAA+AGG - chr4_2:1261088-1261107 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG + chr4_2:1261089-1261108 Msa0582840:intron 15.0%
!!! TAGATACAATTTTAAAATAC+TGG + chr4_2:1261225-1261244 Msa0582840:intron 15.0%
!! AAAATTTCTACAATAAGATT+AGG - chr4_2:1261485-1261504 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG + chr4_2:1262168-1262187 Msa0582840:CDS 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG + chr4_2:1262437-1262456 Msa0582840:CDS 15.0%
!!! AAAATTGTATCTAAAATGAC+TGG - chr4_2:1261218-1261237 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG - chr4_2:1261326-1261345 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG - chr4_2:1261417-1261436 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG + chr4_2:1261486-1261505 Msa0582840:intron 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG - chr4_2:1261903-1261922 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTGT+GGG - chr4_2:1261950-1261969 None:intergenic 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG + chr4_2:1261952-1261971 Msa0582840:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG + chr4_2:1262057-1262076 Msa0582840:CDS 20.0%
!!! AAAATTGTATCTAAAATGAC+TGG - chr4_2:1261218-1261237 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG - chr4_2:1261326-1261345 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG - chr4_2:1261417-1261436 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG + chr4_2:1261486-1261505 Msa0582840:intron 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG - chr4_2:1261903-1261922 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTGT+GGG - chr4_2:1261950-1261969 None:intergenic 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG + chr4_2:1261952-1261971 Msa0582840:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG + chr4_2:1262057-1262076 Msa0582840:CDS 20.0%
! ATATGTTTCCTTATTCTAAG+TGG + chr4_2:1260966-1260985 Msa0582840:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG - chr4_2:1260977-1260996 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG + chr4_2:1260979-1260998 Msa0582840:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG + chr4_2:1260980-1260999 Msa0582840:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG + chr4_2:1261012-1261031 Msa0582840:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG + chr4_2:1261013-1261032 Msa0582840:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG + chr4_2:1261176-1261195 Msa0582840:intron 25.0%
! GAGATACACGATTTAAATAA+CGG - chr4_2:1261256-1261275 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG + chr4_2:1261435-1261454 Msa0582840:intron 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG + chr4_2:1261440-1261459 Msa0582840:intron 25.0%
!!! AAATAGCAGAATAATGGATA+GGG + chr4_2:1261441-1261460 Msa0582840:intron 25.0%
! TTTCTACAATAAGATTAGGT+AGG - chr4_2:1261481-1261500 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG + chr4_2:1261498-1261517 Msa0582840:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG + chr4_2:1261528-1261547 Msa0582840:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG + chr4_2:1261535-1261554 Msa0582840:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG - chr4_2:1261582-1261601 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG - chr4_2:1261785-1261804 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG + chr4_2:1261807-1261826 Msa0582840:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG - chr4_2:1261902-1261921 None:intergenic 25.0%
!!! CCACAAGAATATTTTTTTTG+TGG - chr4_2:1261951-1261970 None:intergenic 25.0%
! CCACAAAAAAAATATTCTTG+TGG + chr4_2:1261948-1261967 Msa0582840:intron 25.0%
! ATTATACGAAAAGAAAAAGG+TGG + chr4_2:1262171-1262190 Msa0582840:CDS 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG + chr4_2:1262410-1262429 Msa0582840:CDS 25.0%
! ATATGTTTCCTTATTCTAAG+TGG + chr4_2:1260966-1260985 Msa0582840:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG - chr4_2:1260977-1260996 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG + chr4_2:1260979-1260998 Msa0582840:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG + chr4_2:1260980-1260999 Msa0582840:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG + chr4_2:1261012-1261031 Msa0582840:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG + chr4_2:1261013-1261032 Msa0582840:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG + chr4_2:1261176-1261195 Msa0582840:intron 25.0%
! GAGATACACGATTTAAATAA+CGG - chr4_2:1261256-1261275 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG + chr4_2:1261435-1261454 Msa0582840:intron 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG + chr4_2:1261440-1261459 Msa0582840:intron 25.0%
!!! AAATAGCAGAATAATGGATA+GGG + chr4_2:1261441-1261460 Msa0582840:intron 25.0%
! TTTCTACAATAAGATTAGGT+AGG - chr4_2:1261481-1261500 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG + chr4_2:1261498-1261517 Msa0582840:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG + chr4_2:1261528-1261547 Msa0582840:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG + chr4_2:1261535-1261554 Msa0582840:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG - chr4_2:1261582-1261601 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG - chr4_2:1261785-1261804 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG + chr4_2:1261807-1261826 Msa0582840:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG - chr4_2:1261902-1261921 None:intergenic 25.0%
!!! CCACAAGAATATTTTTTTTG+TGG - chr4_2:1261951-1261970 None:intergenic 25.0%
! CCACAAAAAAAATATTCTTG+TGG + chr4_2:1261948-1261967 Msa0582840:intron 25.0%
! ATTATACGAAAAGAAAAAGG+TGG + chr4_2:1262171-1262190 Msa0582840:CDS 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG + chr4_2:1262410-1262429 Msa0582840:CDS 25.0%
AATGCAAAATCGTATGGATA+CGG - chr4_2:1260932-1260951 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG - chr4_2:1260938-1260957 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG + chr4_2:1260981-1261000 Msa0582840:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG - chr4_2:1261210-1261229 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG - chr4_2:1261278-1261297 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG + chr4_2:1261404-1261423 Msa0582840:intron 30.0%
AATAAGATTAGGTAGGTTAC+TGG - chr4_2:1261474-1261493 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG - chr4_2:1261525-1261544 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG - chr4_2:1261617-1261636 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG - chr4_2:1261618-1261637 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG + chr4_2:1261709-1261728 Msa0582840:intron 30.0%
AACTGCTTCAAATACAGTAT+CGG - chr4_2:1261753-1261772 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG + chr4_2:1261797-1261816 Msa0582840:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG + chr4_2:1261806-1261825 Msa0582840:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG + chr4_2:1261808-1261827 Msa0582840:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG + chr4_2:1261899-1261918 Msa0582840:CDS 30.0%
ATTTCACTATATTTCTTCCC+AGG - chr4_2:1261985-1262004 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG + chr4_2:1262060-1262079 Msa0582840:CDS 30.0%
ACATTAGGATTACTCGTTAA+TGG - chr4_2:1262306-1262325 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG + chr4_2:1262305-1262324 Msa0582840:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG + chr4_2:1262306-1262325 Msa0582840:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG + chr4_2:1262395-1262414 Msa0582840:CDS 30.0%
AATGCAAAATCGTATGGATA+CGG - chr4_2:1260932-1260951 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG - chr4_2:1260938-1260957 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG + chr4_2:1260981-1261000 Msa0582840:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG - chr4_2:1261210-1261229 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG - chr4_2:1261278-1261297 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG + chr4_2:1261404-1261423 Msa0582840:intron 30.0%
AATAAGATTAGGTAGGTTAC+TGG - chr4_2:1261474-1261493 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG - chr4_2:1261525-1261544 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG - chr4_2:1261617-1261636 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG - chr4_2:1261618-1261637 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG + chr4_2:1261709-1261728 Msa0582840:intron 30.0%
AACTGCTTCAAATACAGTAT+CGG - chr4_2:1261753-1261772 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG + chr4_2:1261797-1261816 Msa0582840:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG + chr4_2:1261806-1261825 Msa0582840:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG + chr4_2:1261808-1261827 Msa0582840:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG + chr4_2:1261899-1261918 Msa0582840:CDS 30.0%
ATTTCACTATATTTCTTCCC+AGG - chr4_2:1261985-1262004 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG + chr4_2:1262060-1262079 Msa0582840:CDS 30.0%
ACATTAGGATTACTCGTTAA+TGG - chr4_2:1262306-1262325 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG + chr4_2:1262305-1262324 Msa0582840:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG + chr4_2:1262306-1262325 Msa0582840:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG + chr4_2:1262395-1262414 Msa0582840:CDS 30.0%
ATAGGATTCCATTCAACTCA+TGG + chr4_2:1261107-1261126 Msa0582840:intron 35.0%
ATTCCATTCAACTCATGGTT+GGG + chr4_2:1261112-1261131 Msa0582840:intron 35.0%
ATGGTTGGGAACTAATGATT+GGG + chr4_2:1261126-1261145 Msa0582840:intron 35.0%
! GGGTCTGTCTATAAAGATTT+TGG + chr4_2:1261146-1261165 Msa0582840:intron 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG + chr4_2:1261628-1261647 Msa0582840:CDS 35.0%
!! TATCCCATTTTTGCTCAACA+GGG + chr4_2:1261629-1261648 Msa0582840:CDS 35.0%
TAACCCTGTTGAGCAAAAAT+GGG - chr4_2:1261635-1261654 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG - chr4_2:1261636-1261655 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG - chr4_2:1261703-1261722 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG - chr4_2:1261752-1261771 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG + chr4_2:1261821-1261840 Msa0582840:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG + chr4_2:1261844-1261863 Msa0582840:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG + chr4_2:1261845-1261864 Msa0582840:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG + chr4_2:1261856-1261875 Msa0582840:CDS 35.0%
ACTATATTTCTTCCCAGGAA+CGG - chr4_2:1261980-1261999 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG - chr4_2:1262010-1262029 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG + chr4_2:1262061-1262080 Msa0582840:CDS 35.0%
GTTTATAATGCTACAGCAAC+AGG + chr4_2:1262135-1262154 Msa0582840:CDS 35.0%
TGGATACGAAATAACGATAG+TGG + chr4_2:1262191-1262210 Msa0582840:CDS 35.0%
!! AATAACGATAGTGGATGCAT+CGG + chr4_2:1262200-1262219 Msa0582840:CDS 35.0%
ATAGGATTCCATTCAACTCA+TGG + chr4_2:1261107-1261126 Msa0582840:intron 35.0%
ATTCCATTCAACTCATGGTT+GGG + chr4_2:1261112-1261131 Msa0582840:intron 35.0%
ATGGTTGGGAACTAATGATT+GGG + chr4_2:1261126-1261145 Msa0582840:intron 35.0%
! GGGTCTGTCTATAAAGATTT+TGG + chr4_2:1261146-1261165 Msa0582840:intron 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG + chr4_2:1261628-1261647 Msa0582840:CDS 35.0%
!! TATCCCATTTTTGCTCAACA+GGG + chr4_2:1261629-1261648 Msa0582840:CDS 35.0%
TAACCCTGTTGAGCAAAAAT+GGG - chr4_2:1261635-1261654 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG - chr4_2:1261636-1261655 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG - chr4_2:1261703-1261722 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG - chr4_2:1261752-1261771 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG + chr4_2:1261821-1261840 Msa0582840:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG + chr4_2:1261844-1261863 Msa0582840:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG + chr4_2:1261845-1261864 Msa0582840:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG + chr4_2:1261856-1261875 Msa0582840:CDS 35.0%
ACTATATTTCTTCCCAGGAA+CGG - chr4_2:1261980-1261999 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG - chr4_2:1262010-1262029 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG + chr4_2:1262061-1262080 Msa0582840:CDS 35.0%
GTTTATAATGCTACAGCAAC+AGG + chr4_2:1262135-1262154 Msa0582840:CDS 35.0%
TGGATACGAAATAACGATAG+TGG + chr4_2:1262191-1262210 Msa0582840:CDS 35.0%
!! AATAACGATAGTGGATGCAT+CGG + chr4_2:1262200-1262219 Msa0582840:CDS 35.0%
GGTTGTTCGTCTCTATCAAT+TGG - chr4_2:1260905-1260924 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG - chr4_2:1260926-1260945 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG + chr4_2:1261111-1261130 Msa0582840:intron 40.0%
CATGGTTGGGAACTAATGAT+TGG + chr4_2:1261125-1261144 Msa0582840:intron 40.0%
TGAGCAATACGGAAATGGAT+CGG - chr4_2:1261571-1261590 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG - chr4_2:1261576-1261595 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG - chr4_2:1261719-1261738 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG + chr4_2:1261721-1261740 Msa0582840:intron 40.0%
TATATTTCTTCCCAGGAACG+GGG - chr4_2:1261978-1261997 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG - chr4_2:1261979-1261998 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG - chr4_2:1262033-1262052 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG - chr4_2:1262034-1262053 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG + chr4_2:1262068-1262087 Msa0582840:CDS 40.0%
ATTATTACTCTTGCTCCCGT+CGG - chr4_2:1262112-1262131 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG + chr4_2:1262234-1262253 Msa0582840:CDS 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG + chr4_2:1262257-1262276 Msa0582840:CDS 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG + chr4_2:1262258-1262277 Msa0582840:CDS 40.0%
! AATCCTAATGTGGGTGGATT+TGG + chr4_2:1262315-1262334 Msa0582840:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG - chr4_2:1262372-1262391 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG + chr4_2:1262380-1262399 Msa0582840:CDS 40.0%
GGTTGTTCGTCTCTATCAAT+TGG - chr4_2:1260905-1260924 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG - chr4_2:1260926-1260945 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG + chr4_2:1261111-1261130 Msa0582840:intron 40.0%
CATGGTTGGGAACTAATGAT+TGG + chr4_2:1261125-1261144 Msa0582840:intron 40.0%
TGAGCAATACGGAAATGGAT+CGG - chr4_2:1261571-1261590 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG - chr4_2:1261576-1261595 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG - chr4_2:1261719-1261738 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG + chr4_2:1261721-1261740 Msa0582840:intron 40.0%
TATATTTCTTCCCAGGAACG+GGG - chr4_2:1261978-1261997 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG - chr4_2:1261979-1261998 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG - chr4_2:1262033-1262052 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG - chr4_2:1262034-1262053 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG + chr4_2:1262068-1262087 Msa0582840:CDS 40.0%
ATTATTACTCTTGCTCCCGT+CGG - chr4_2:1262112-1262131 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG + chr4_2:1262234-1262253 Msa0582840:CDS 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG + chr4_2:1262257-1262276 Msa0582840:CDS 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG + chr4_2:1262258-1262277 Msa0582840:CDS 40.0%
! AATCCTAATGTGGGTGGATT+TGG + chr4_2:1262315-1262334 Msa0582840:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG - chr4_2:1262372-1262391 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG + chr4_2:1262380-1262399 Msa0582840:CDS 40.0%
! GTTCCCAACCATGAGTTGAA+TGG - chr4_2:1261118-1261137 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG - chr4_2:1261570-1261589 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG + chr4_2:1261656-1261675 Msa0582840:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG + chr4_2:1261657-1261676 Msa0582840:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG - chr4_2:1261678-1261697 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG - chr4_2:1262069-1262088 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG + chr4_2:1262067-1262086 Msa0582840:CDS 45.0%
ATATACGTAGGCGGGAATAG+GGG + chr4_2:1262069-1262088 Msa0582840:CDS 45.0%
TTATTACTCTTGCTCCCGTC+GGG - chr4_2:1262111-1262130 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG - chr4_2:1262255-1262274 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG - chr4_2:1262261-1262280 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG + chr4_2:1262309-1262328 Msa0582840:CDS 45.0%
TGACCAAATCCACCCACATT+AGG - chr4_2:1262321-1262340 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG + chr4_2:1262320-1262339 Msa0582840:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG + chr4_2:1262321-1262340 Msa0582840:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG + chr4_2:1262363-1262382 Msa0582840:CDS 45.0%
! GTTCCCAACCATGAGTTGAA+TGG - chr4_2:1261118-1261137 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG - chr4_2:1261570-1261589 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG + chr4_2:1261656-1261675 Msa0582840:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG + chr4_2:1261657-1261676 Msa0582840:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG - chr4_2:1261678-1261697 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG - chr4_2:1262069-1262088 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG + chr4_2:1262067-1262086 Msa0582840:CDS 45.0%
ATATACGTAGGCGGGAATAG+GGG + chr4_2:1262069-1262088 Msa0582840:CDS 45.0%
TTATTACTCTTGCTCCCGTC+GGG - chr4_2:1262111-1262130 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG - chr4_2:1262255-1262274 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG - chr4_2:1262261-1262280 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG + chr4_2:1262309-1262328 Msa0582840:CDS 45.0%
TGACCAAATCCACCCACATT+AGG - chr4_2:1262321-1262340 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG + chr4_2:1262320-1262339 Msa0582840:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG + chr4_2:1262321-1262340 Msa0582840:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG + chr4_2:1262363-1262382 Msa0582840:CDS 45.0%
!!! AAAAAAACAAATTTTATAAT+TGG - chr4_2:1261334-1261353 None:intergenic 5.0%
!!! AAAAAAACAAATTTTATAAT+TGG - chr4_2:1261334-1261353 None:intergenic 5.0%
ATCTCGGGCGAAATACGATC+AGG - chr4_2:1261887-1261906 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG - chr4_2:1262015-1262034 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG - chr4_2:1262027-1262046 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG + chr4_2:1262093-1262112 Msa0582840:CDS 50.0%
!! ACGATAGTGGATGCATCGGA+TGG + chr4_2:1262204-1262223 Msa0582840:CDS 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG - chr4_2:1262252-1262271 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG + chr4_2:1262322-1262341 Msa0582840:CDS 50.0%
ATCTCGGGCGAAATACGATC+AGG - chr4_2:1261887-1261906 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG - chr4_2:1262015-1262034 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG - chr4_2:1262027-1262046 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG + chr4_2:1262093-1262112 Msa0582840:CDS 50.0%
!! ACGATAGTGGATGCATCGGA+TGG + chr4_2:1262204-1262223 Msa0582840:CDS 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG - chr4_2:1262252-1262271 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG + chr4_2:1262322-1262341 Msa0582840:CDS 50.0%
!! GTATCGGGAAGTACCGCTTG+TGG - chr4_2:1261737-1261756 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG - chr4_2:1261863-1261882 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG - chr4_2:1261882-1261901 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG - chr4_2:1261883-1261902 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG - chr4_2:1261884-1261903 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG + chr4_2:1262094-1262113 Msa0582840:CDS 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG + chr4_2:1262323-1262342 Msa0582840:CDS 55.0%
!! GTATCGGGAAGTACCGCTTG+TGG - chr4_2:1261737-1261756 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG - chr4_2:1261863-1261882 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG - chr4_2:1261882-1261901 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG - chr4_2:1261883-1261902 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG - chr4_2:1261884-1261903 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG + chr4_2:1262094-1262113 Msa0582840:CDS 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG + chr4_2:1262323-1262342 Msa0582840:CDS 55.0%
ATCCGAGAGAAGCTACCGGG+CGG + chr4_2:1261660-1261679 Msa0582840:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG - chr4_2:1261665-1261684 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG + chr4_2:1261965-1261984 Msa0582840:intron 60.0%
ACGTAGGCGGGAATAGGGGA+AGG + chr4_2:1262073-1262092 Msa0582840:CDS 60.0%
CGTAGGCGGGAATAGGGGAA+GGG + chr4_2:1262074-1262093 Msa0582840:CDS 60.0%
GTAGGCGGGAATAGGGGAAG+GGG + chr4_2:1262075-1262094 Msa0582840:CDS 60.0%
ATCCGAGAGAAGCTACCGGG+CGG + chr4_2:1261660-1261679 Msa0582840:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG - chr4_2:1261665-1261684 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG + chr4_2:1261965-1261984 Msa0582840:intron 60.0%
ACGTAGGCGGGAATAGGGGA+AGG + chr4_2:1262073-1262092 Msa0582840:CDS 60.0%
CGTAGGCGGGAATAGGGGAA+GGG + chr4_2:1262074-1262093 Msa0582840:CDS 60.0%
GTAGGCGGGAATAGGGGAAG+GGG + chr4_2:1262075-1262094 Msa0582840:CDS 60.0%
CTTGTGGTAGGCCCCGTTCC+TGG + chr4_2:1261964-1261983 Msa0582840:intron 65.0%
CTTGTGGTAGGCCCCGTTCC+TGG + chr4_2:1261964-1261983 Msa0582840:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 1260879 1262485 1260879 ID=Msa0582840;Name=Msa0582840
chr4_2 mRNA 1260879 1262485 1260879 ID=Msa0582840-mRNA-1;Parent=Msa0582840;Name=Msa0582840-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|0.33|0.25|4|0|349
chr4_2 exon 1260879 1261059 1260879 ID=Msa0582840-mRNA-1:exon:267;Parent=Msa0582840-mRNA-1
chr4_2 exon 1261498 1261718 1261498 ID=Msa0582840-mRNA-1:exon:268;Parent=Msa0582840-mRNA-1
chr4_2 exon 1261731 1261920 1261731 ID=Msa0582840-mRNA-1:exon:269;Parent=Msa0582840-mRNA-1
chr4_2 exon 1262028 1262485 1262028 ID=Msa0582840-mRNA-1:exon:270;Parent=Msa0582840-mRNA-1
chr4_2 CDS 1260879 1261059 1260879 ID=Msa0582840-mRNA-1:cds;Parent=Msa0582840-mRNA-1
chr4_2 CDS 1261498 1261718 1261498 ID=Msa0582840-mRNA-1:cds;Parent=Msa0582840-mRNA-1
chr4_2 CDS 1261731 1261920 1261731 ID=Msa0582840-mRNA-1:cds;Parent=Msa0582840-mRNA-1
chr4_2 CDS 1262028 1262485 1262028 ID=Msa0582840-mRNA-1:cds;Parent=Msa0582840-mRNA-1
Gene Sequence

>Msa0582840

ATGGAAATCTACAAAGAAAGCATCCAATTGATAGAGACGAACAACCAAGACCGTATCCATACGATTTTGCATTTCTGTACAAATATAATATGTTTCCTTATTCTAAGTGGTTATTCTATTAGGGGTAATCAAGAACTCATTATTCTTAACTCTTGGGTTCAAGAATTTCTATATAACTTAAAAATTTTCAGGATGAATGATTGGACCATGCAAACTAGAAATGCTTTTTCTTGGATAAAGGAAGAGATTACCCGATCCATTTCCGTATTGCTCATGATCTATATAATAACTCGAGCACCCATTTCAAATGCATATCCCATTTTTGCTCAACAGGGTTATGAAAATCCGAGAGAAGCTACCGGGCGGATTGTATGTGCTAATTGCCATTTAGCTAATAAGCCTGTTCCACAAGCGGTACTTCCCGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAAGTTAAACAAGTTCTTGCTAATGGTAAAAAAGGGGCTTTGAATGTAGGTGCTGTTCTTATTTTACCAGAGGGTTTTGAATTGGCCCCTCCTGATCGTATTTCGCCCGAGATTAAAGAAAAAATAGATCCCGCTACTAAGAGAGATGTTCACTTCTTAAAATATCCTATATACGTAGGCGGGAATAGGGGAAGGGGTCAGATTTATCCCGACGGGAGCAAGAGTAATAATAATGTTTATAATGCTACAGCAACAGGTATAGTAAATAAAATTATACGAAAAGAAAAAGGTGGATACGAAATAACGATAGTGGATGCATCGGATGGACGTGAAGTGATTGATATTATACCGCCAGGACCAGAACTTCTTGTTTCAGAGGGTGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGTGGATTTGGTCAGGGGGATGCAGAAATAGTGCTTCAAGATCCGTTACGTGTACAAGGTCTGTTGTTCTTCTTGGCATCTATTATTTTGGCACAAATCTTTTTGGTTCTTAAAAAGAAACAATTTGAAAAGGTTCAATTGTCCGAAATGAATTTTTAG

Protein sequence

>Msa0582840

MEIYKESIQLIETNNQDRIHTILHFCTNIICFLILSGYSIRGNQELIILNSWVQEFLYNLKIFRMNDWTMQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIVCANCHLANKPVPQAVLPDTVFEAVVRIPYDMQVKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEIKEKIDPATKRDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATATGIVNKIIRKEKGGYEITIVDASDGREVIDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASIILAQIFLVLKKKQFEKVQLSEMNF*