AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1086450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1086450 MtrunA17_Chr4g0015651 84.746 413 2 2 1 352 1 413 0.0 669
Msa1086450 MtrunA17_Chr4g0016741 84.746 413 2 2 1 352 1 413 0.0 669
Msa1086450 MtrunA17_CPg0492941 84.746 413 2 2 1 352 1 413 0.0 669
Msa1086450 MtrunA17_MTg0490471 55.000 420 119 3 3 352 4 423 1.03e-149 431
Msa1086450 MtrunA17_Chr2g0286451 88.235 187 20 1 41 227 5 189 1.49e-112 325
Msa1086450 MtrunA17_Chr2g0278821 80.311 193 11 1 187 352 2 194 1.24e-103 306
Msa1086450 MtrunA17_Chr4g0040631 69.106 123 4 1 1 89 1 123 1.13e-44 150
Msa1086450 MtrunA17_Chr4g0061471 89.333 75 8 0 66 140 1 75 2.19e-40 137
Msa1086450 MtrunA17_Chr1g0211291 26.667 375 201 8 32 338 69 437 2.64e-22 97.8
Msa1086450 MtrunA17_Chr7g0250051 26.471 374 202 8 32 338 68 435 7.84e-22 96.3
Msa1086450 MtrunA17_Chr5g0413061 52.941 85 26 2 161 244 13 84 1.29e-19 82.4
Msa1086450 MtrunA17_Chr1g0208751 23.701 308 200 5 34 306 127 434 1.67e-16 80.5
Msa1086450 MtrunA17_Chr1g0208761 23.052 308 202 5 34 306 130 437 1.43e-15 77.8
Msa1086450 MtrunA17_Chr4g0016371 24.823 282 180 5 49 298 46 327 1.73e-12 68.2
Msa1086450 MtrunA17_CPg0493401 24.823 282 180 5 49 298 85 366 2.11e-12 68.2
Msa1086450 MtrunA17_Chr7g0229391 24.468 282 181 4 49 298 85 366 3.80e-12 67.4
Msa1086450 MtrunA17_Chr3g0090971 24.823 282 180 5 49 298 85 366 7.69e-12 66.2
Msa1086450 MtrunA17_Chr4g0000341 24.809 262 150 6 92 311 210 466 7.81e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1086450 ATCG00120.1 81.598 413 15 2 1 352 1 413 0.0 647
Msa1086450 ATMG01190.1 52.632 418 128 3 5 352 6 423 1.28e-142 414
Msa1086450 AT2G07698.1 52.871 418 127 3 5 352 276 693 7.96e-141 418
Msa1086450 AT4G38510.1 26.738 374 201 8 32 338 68 435 5.66e-23 100
Msa1086450 AT4G38510.3 26.738 374 201 8 32 338 68 435 5.66e-23 100
Msa1086450 AT4G38510.4 26.738 374 201 8 32 338 68 435 5.66e-23 100
Msa1086450 AT4G38510.2 26.738 374 201 8 32 338 68 435 5.66e-23 100
Msa1086450 AT4G38510.5 26.738 374 201 8 32 338 75 442 6.82e-23 99.8
Msa1086450 AT1G76030.1 26.738 374 201 8 32 338 67 434 3.66e-22 97.8
Msa1086450 AT1G20260.1 26.133 375 203 8 32 338 67 435 2.73e-21 95.1
Msa1086450 AT5G08690.1 25.000 308 196 5 34 306 127 434 7.96e-18 85.1
Msa1086450 AT5G08670.1 25.000 308 196 5 34 306 127 434 9.05e-18 84.7
Msa1086450 AT5G08680.1 25.000 308 196 5 34 306 130 437 1.09e-17 84.7
Msa1086450 ATCG00480.1 23.592 284 185 4 47 298 83 366 6.11e-11 63.9

Find 86 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAGTAAGTGAGGGTTATT+TGG 0.166311 7_2:-87405992 Msa1086450:CDS
GACGGCATTGCTCGTATTTA+TGG 0.205588 7_2:-87406176 Msa1086450:CDS
CCCAAATAACCCTCACTTAC+TGG 0.241036 7_2:+87405991 None:intergenic
GGCCAGCGAGAATTAATTAT+TGG 0.267680 7_2:-87405799 Msa1086450:CDS
GGTAGCTGGTAAATTAAAAT+TGG 0.278592 7_2:-87405153 Msa1086450:CDS
TCTCGCTGGCCACGCCCTAT+AGG 0.298734 7_2:+87405811 None:intergenic
GCCAGAGCTGCACCTGTATA+AGG 0.317929 7_2:+87405568 None:intergenic
CTCGCTGGCCACGCCCTATA+GGG 0.318797 7_2:+87405812 None:intergenic
TTTACCAGCTACCTGTTTCA+TGG 0.322039 7_2:+87405163 None:intergenic
ATTGATTCTATGATCCCTAT+AGG 0.359827 7_2:-87405826 Msa1086450:CDS
GCGATAAGCCTGTGCTTGTT+TGG 0.364708 7_2:+87405492 None:intergenic
GCCAGCGAGAATTAATTATT+GGG 0.365780 7_2:-87405798 Msa1086450:CDS
CCTGATTGGGTCTCAACTAT+TGG 0.368964 7_2:+87405335 None:intergenic
TGGTAAATTAAAATTGGAAT+TGG 0.382867 7_2:-87405147 Msa1086450:CDS
ATTTCTCCTCGACCATCAAT+AGG 0.391542 7_2:+87405943 None:intergenic
TCCTTATACAGGTGCAGCTC+TGG 0.392160 7_2:-87405569 Msa1086450:CDS
GCCCTAGCTAAACCTATTGA+TGG 0.393369 7_2:-87405955 Msa1086450:CDS
CCAATAGTTGAGACCCAATC+AGG 0.395916 7_2:-87405335 Msa1086450:CDS
AGATACAATTCTCAATCAAC+AGG 0.401486 7_2:-87405743 Msa1086450:CDS
TCAAATTAAAGCCATGAAAC+AGG 0.408465 7_2:-87405174 Msa1086450:CDS
AAGCTGAAACATCTCCTGAT+TGG 0.409535 7_2:+87405321 None:intergenic
CCAGTAAGTGAGGGTTATTT+GGG 0.424091 7_2:-87405991 Msa1086450:CDS
ATTATTGGGGACAGACAAAC+AGG 0.427629 7_2:-87405784 Msa1086450:CDS
AAATATTTGGCCATCTGTAA+TGG 0.434228 7_2:+87405277 None:intergenic
TTGATTCTATGATCCCTATA+GGG 0.437674 7_2:-87405825 Msa1086450:CDS
AGGCTCATACACGGAACGTC+TGG 0.440884 7_2:+87405870 None:intergenic
GGTATTTCCGTTTCCAGAGT+TGG 0.443512 7_2:-87405206 Msa1086450:CDS
GTAATGGAAATTACATTAGT+AGG 0.444650 7_2:+87405293 None:intergenic
ATATGTGTTTATGTAGCTAT+TGG 0.445393 7_2:-87405709 Msa1086450:CDS
TAAAGCTACGCAAAATCAAT+TGG 0.449089 7_2:-87405075 Msa1086450:CDS
TTCGTAATAGAAGAGACATT+TGG 0.452176 7_2:+87405470 None:intergenic
AGCTGAAACATCTCCTGATT+GGG 0.452206 7_2:+87405322 None:intergenic
GGAAGTTCGGTAAAAGCAAC+AGG 0.457398 7_2:-87406030 Msa1086450:CDS
ATAAGCCTGTGCTTGTTTGG+AGG 0.462375 7_2:+87405495 None:intergenic
CAATACCTCGCTCCTTATAC+AGG 0.462710 7_2:-87405580 Msa1086450:CDS
CGTGTATGAGCCTCTTCAAA+CGG 0.465005 7_2:-87405860 Msa1086450:CDS
TCGAGGAGAAATTTCAGCTT+CGG 0.476522 7_2:-87405932 Msa1086450:CDS
CGCCGATCCAACTCTGGAAA+CGG 0.485937 7_2:+87405199 None:intergenic
TATATTGCTCAATACGTTCA+CGG 0.487151 7_2:+87406246 None:intergenic
AAATTTCAGCTTCGGAATCT+CGG 0.492871 7_2:-87405924 Msa1086450:CDS
GCGAGGTATTGTAATGTAGC+TGG 0.497569 7_2:+87405592 None:intergenic
TTCCGTTTCCAGAGTTGGAT+CGG 0.499691 7_2:-87405201 Msa1086450:CDS
ACTAATTTCATCTGCACGAA+TGG 0.507471 7_2:+87406277 None:intergenic
TCTGCCGATCTATTCAATGC+TGG 0.509351 7_2:-87405251 Msa1086450:CDS
GCTGATACAAGAGGGAAGTT+CGG 0.510716 7_2:-87406043 Msa1086450:intron
GTGTATGAGCCTCTTCAAAC+GGG 0.511475 7_2:-87405859 Msa1086450:CDS
GTAACTACTTTACAAGAAAG+AGG 0.516144 7_2:-87405658 Msa1086450:CDS
TGATTAAAGTGTGACGTTCA+CGG 0.516487 7_2:+87405530 None:intergenic
TTGAGCCGCCGATCCAACTC+TGG 0.524235 7_2:+87405193 None:intergenic
TAAGCCTGTGCTTGTTTGGA+GGG 0.526272 7_2:+87405496 None:intergenic
TTAATCGAATCTCCCGCTCC+CGG 0.527597 7_2:-87405901 Msa1086450:CDS
GAAATACCCACATTAATAGC+TGG 0.538501 7_2:+87405221 None:intergenic
TTATGGTCTTGATGAAGTAA+TGG 0.538951 7_2:-87406159 Msa1086450:CDS
CCCCAATAATTAATTCTCGC+TGG 0.539649 7_2:+87405797 None:intergenic
GGAACGTCTGGAAATAATAC+CGG 0.540181 7_2:+87405882 None:intergenic
TTTACAAGAAAGAGGGGCAA+TGG 0.541624 7_2:-87405650 Msa1086450:CDS
GACCATCAATAGGTTTAGCT+AGG 0.542268 7_2:+87405953 None:intergenic
AATGGAGTACACTATTATAG+TGG 0.544433 7_2:-87405632 Msa1086450:CDS
AGCATCTTCTGTGGCTCAAG+TGG 0.546125 7_2:-87405680 Msa1086450:CDS
AATGTAATTTCCATTACAGA+TGG 0.557336 7_2:-87405287 Msa1086450:CDS
AAAGCCATGAAACAGGTAGC+TGG 0.558354 7_2:-87405167 Msa1086450:CDS
CTGGAAATAATACCGGGAGC+GGG 0.565141 7_2:+87405889 None:intergenic
CGATCCCTCCAAACAAGCAC+AGG 0.574680 7_2:-87405500 Msa1086450:CDS
TGCTCAGATACCAGTAAGTG+AGG 0.577261 7_2:-87406001 Msa1086450:CDS
TAACTACTTTACAAGAAAGA+GGG 0.578222 7_2:-87405657 Msa1086450:CDS
TCTGGAAATAATACCGGGAG+CGG 0.583040 7_2:+87405888 None:intergenic
GCAATAAGTCCCGTTTGAAG+AGG 0.589598 7_2:+87405850 None:intergenic
ACAGGTACTGTACTTCAAGT+AGG 0.592569 7_2:-87406200 Msa1086450:CDS
CTTCTATTACGAAGACCACC+AGG 0.597315 7_2:-87405460 Msa1086450:intron
ACCATCAATAGGTTTAGCTA+GGG 0.601516 7_2:+87405954 None:intergenic
ATCAGACCAGCTATTAATGT+GGG 0.604091 7_2:-87405227 Msa1086450:CDS
GCTAAACCTATTGATGGTCG+AGG 0.620970 7_2:-87405949 Msa1086450:CDS
GAACGTCTGGAAATAATACC+GGG 0.622363 7_2:+87405883 None:intergenic
AATCAGACCAGCTATTAATG+TGG 0.625394 7_2:-87405228 Msa1086450:CDS
GATTCCAGCATTGAATAGAT+CGG 0.626418 7_2:+87405247 None:intergenic
TCTATGATCCCTATAGGGCG+TGG 0.628110 7_2:-87405820 Msa1086450:CDS
AACTACTTTACAAGAAAGAG+GGG 0.635218 7_2:-87405656 Msa1086450:CDS
CCAGCGAGAATTAATTATTG+GGG 0.636830 7_2:-87405797 Msa1086450:CDS
GGTCTTGATGAAGTAATGGC+AGG 0.640111 7_2:-87406155 Msa1086450:intron
ACGCAAAATCAATTGGCAAG+AGG 0.645378 7_2:-87405068 None:intergenic
CGTTTGAAGAGGCTCATACA+CGG 0.655862 7_2:+87405861 None:intergenic
CGTTTCCAGAGTTGGATCGG+CGG 0.663289 7_2:-87405198 Msa1086450:CDS
GCTCAGATACCAGTAAGTGA+GGG 0.673181 7_2:-87406000 Msa1086450:CDS
CTGCACCTGTATAAGGAGCG+AGG 0.679934 7_2:+87405575 None:intergenic
ACTGTACTTCAAGTAGGCGA+CGG 0.682410 7_2:-87406194 Msa1086450:CDS
GATACAATTCTCAATCAACA+GGG 0.744742 7_2:-87405742 Msa1086450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTATTTACAATTTTTACTT+CGG + chr7_2:87405137-87405156 None:intergenic 15.0%
!!! TGTATTTACAATTTTTACTT+CGG + chr7_2:87405137-87405156 None:intergenic 15.0%
!! GAAGTAAAAATTGTAAATAC+AGG - chr7_2:87405136-87405155 Msa1086450:CDS 20.0%
!! ATGTAAATAAAAAACATCTC+CGG + chr7_2:87405934-87405953 None:intergenic 20.0%
!! TGGTAAATTAAAATTGGAAT+TGG - chr7_2:87406207-87406226 Msa1086450:CDS 20.0%
!! GAAGTAAAAATTGTAAATAC+AGG - chr7_2:87405136-87405155 Msa1086450:CDS 20.0%
!! ATGTAAATAAAAAACATCTC+CGG + chr7_2:87405934-87405953 None:intergenic 20.0%
!! TGGTAAATTAAAATTGGAAT+TGG - chr7_2:87406207-87406226 Msa1086450:CDS 20.0%
!! TAATACAACACCAACATTTT+TGG + chr7_2:87405277-87405296 None:intergenic 25.0%
!!! AAATGTTGGTGTTGTATTAA+TGG - chr7_2:87405278-87405297 Msa1086450:CDS 25.0%
!!! AATGTTGGTGTTGTATTAAT+GGG - chr7_2:87405279-87405298 Msa1086450:CDS 25.0%
! ATATGTGTTTATGTAGCTAT+TGG - chr7_2:87405645-87405664 Msa1086450:CDS 25.0%
! TAACTACTTTACAAGAAAGA+GGG - chr7_2:87405697-87405716 Msa1086450:CDS 25.0%
! TGTAAATAAAAAACATCTCC+GGG + chr7_2:87405933-87405952 None:intergenic 25.0%
!! TTTATTTACATCTCGTCTTT+TGG - chr7_2:87405943-87405962 Msa1086450:CDS 25.0%
! TAACTGAGAACTTAATTTAG+CGG + chr7_2:87405975-87405994 None:intergenic 25.0%
!! GTAATGGAAATTACATTAGT+AGG + chr7_2:87406064-87406083 None:intergenic 25.0%
! AATGTAATTTCCATTACAGA+TGG - chr7_2:87406067-87406086 Msa1086450:intron 25.0%
!! TAATACAACACCAACATTTT+TGG + chr7_2:87405277-87405296 None:intergenic 25.0%
!!! AAATGTTGGTGTTGTATTAA+TGG - chr7_2:87405278-87405297 Msa1086450:CDS 25.0%
!!! AATGTTGGTGTTGTATTAAT+GGG - chr7_2:87405279-87405298 Msa1086450:CDS 25.0%
! ATATGTGTTTATGTAGCTAT+TGG - chr7_2:87405645-87405664 Msa1086450:CDS 25.0%
! TAACTACTTTACAAGAAAGA+GGG - chr7_2:87405697-87405716 Msa1086450:CDS 25.0%
! TGTAAATAAAAAACATCTCC+GGG + chr7_2:87405933-87405952 None:intergenic 25.0%
!! TTTATTTACATCTCGTCTTT+TGG - chr7_2:87405943-87405962 Msa1086450:CDS 25.0%
! TAACTGAGAACTTAATTTAG+CGG + chr7_2:87405975-87405994 None:intergenic 25.0%
!! GTAATGGAAATTACATTAGT+AGG + chr7_2:87406064-87406083 None:intergenic 25.0%
! AATGTAATTTCCATTACAGA+TGG - chr7_2:87406067-87406086 Msa1086450:intron 25.0%
TATATTGCTCAATACGTTCA+CGG + chr7_2:87405111-87405130 None:intergenic 30.0%
! TTATGGTCTTGATGAAGTAA+TGG - chr7_2:87405195-87405214 Msa1086450:CDS 30.0%
TGAATTAGTCGAATTTGAAG+AGG - chr7_2:87405222-87405241 Msa1086450:CDS 30.0%
GAATTAGTCGAATTTGAAGA+GGG - chr7_2:87405223-87405242 Msa1086450:CDS 30.0%
GAATTGGAATCCAAAAATGT+TGG - chr7_2:87405264-87405283 Msa1086450:CDS 30.0%
! ATTGATTCTATGATCCCTAT+AGG - chr7_2:87405528-87405547 Msa1086450:CDS 30.0%
TTGATTCTATGATCCCTATA+GGG - chr7_2:87405529-87405548 Msa1086450:CDS 30.0%
AGATACAATTCTCAATCAAC+AGG - chr7_2:87405611-87405630 Msa1086450:CDS 30.0%
GATACAATTCTCAATCAACA+GGG - chr7_2:87405612-87405631 Msa1086450:CDS 30.0%
GTAACTACTTTACAAGAAAG+AGG - chr7_2:87405696-87405715 Msa1086450:CDS 30.0%
AACTACTTTACAAGAAAGAG+GGG - chr7_2:87405698-87405717 Msa1086450:CDS 30.0%
AATGGAGTACACTATTATAG+TGG - chr7_2:87405722-87405741 Msa1086450:CDS 30.0%
TTCGTAATAGAAGAGACATT+TGG + chr7_2:87405887-87405906 None:intergenic 30.0%
GCTAAATTAAGTTCTCAGTT+AGG - chr7_2:87405974-87405993 Msa1086450:CDS 30.0%
AAATATTTGGCCATCTGTAA+TGG + chr7_2:87406080-87406099 None:intergenic 30.0%
GATCGGCAGATAAAAATATT+TGG + chr7_2:87406093-87406112 None:intergenic 30.0%
TCAAATTAAAGCCATGAAAC+AGG - chr7_2:87406180-87406199 Msa1086450:CDS 30.0%
GGTAGCTGGTAAATTAAAAT+TGG - chr7_2:87406201-87406220 Msa1086450:CDS 30.0%
TAAAGCTACGCAAAATCAAT+TGG - chr7_2:87406279-87406298 Msa1086450:CDS 30.0%
TATATTGCTCAATACGTTCA+CGG + chr7_2:87405111-87405130 None:intergenic 30.0%
! TTATGGTCTTGATGAAGTAA+TGG - chr7_2:87405195-87405214 Msa1086450:CDS 30.0%
TGAATTAGTCGAATTTGAAG+AGG - chr7_2:87405222-87405241 Msa1086450:CDS 30.0%
GAATTAGTCGAATTTGAAGA+GGG - chr7_2:87405223-87405242 Msa1086450:CDS 30.0%
GAATTGGAATCCAAAAATGT+TGG - chr7_2:87405264-87405283 Msa1086450:CDS 30.0%
! ATTGATTCTATGATCCCTAT+AGG - chr7_2:87405528-87405547 Msa1086450:CDS 30.0%
TTGATTCTATGATCCCTATA+GGG - chr7_2:87405529-87405548 Msa1086450:CDS 30.0%
AGATACAATTCTCAATCAAC+AGG - chr7_2:87405611-87405630 Msa1086450:CDS 30.0%
GATACAATTCTCAATCAACA+GGG - chr7_2:87405612-87405631 Msa1086450:CDS 30.0%
GTAACTACTTTACAAGAAAG+AGG - chr7_2:87405696-87405715 Msa1086450:CDS 30.0%
AACTACTTTACAAGAAAGAG+GGG - chr7_2:87405698-87405717 Msa1086450:CDS 30.0%
AATGGAGTACACTATTATAG+TGG - chr7_2:87405722-87405741 Msa1086450:CDS 30.0%
TTCGTAATAGAAGAGACATT+TGG + chr7_2:87405887-87405906 None:intergenic 30.0%
GCTAAATTAAGTTCTCAGTT+AGG - chr7_2:87405974-87405993 Msa1086450:CDS 30.0%
AAATATTTGGCCATCTGTAA+TGG + chr7_2:87406080-87406099 None:intergenic 30.0%
GATCGGCAGATAAAAATATT+TGG + chr7_2:87406093-87406112 None:intergenic 30.0%
TCAAATTAAAGCCATGAAAC+AGG - chr7_2:87406180-87406199 Msa1086450:CDS 30.0%
GGTAGCTGGTAAATTAAAAT+TGG - chr7_2:87406201-87406220 Msa1086450:CDS 30.0%
TAAAGCTACGCAAAATCAAT+TGG - chr7_2:87406279-87406298 Msa1086450:CDS 30.0%
ACTAATTTCATCTGCACGAA+TGG + chr7_2:87405080-87405099 None:intergenic 35.0%
ACCATCAATAGGTTTAGCTA+GGG + chr7_2:87405403-87405422 None:intergenic 35.0%
AAATTTCAGCTTCGGAATCT+CGG - chr7_2:87405430-87405449 Msa1086450:intron 35.0%
GCCAGCGAGAATTAATTATT+GGG - chr7_2:87405556-87405575 Msa1086450:CDS 35.0%
CCAGCGAGAATTAATTATTG+GGG - chr7_2:87405557-87405576 Msa1086450:CDS 35.0%
TGATTAAAGTGTGACGTTCA+CGG + chr7_2:87405827-87405846 None:intergenic 35.0%
TTAAGTTCTCAGTTAGGTGA+AGG - chr7_2:87405980-87405999 Msa1086450:CDS 35.0%
! GATTCCAGCATTGAATAGAT+CGG + chr7_2:87406110-87406129 None:intergenic 35.0%
AATCAGACCAGCTATTAATG+TGG - chr7_2:87406126-87406145 Msa1086450:intron 35.0%
ATCAGACCAGCTATTAATGT+GGG - chr7_2:87406127-87406146 Msa1086450:intron 35.0%
GAAATACCCACATTAATAGC+TGG + chr7_2:87406136-87406155 None:intergenic 35.0%
ACTAATTTCATCTGCACGAA+TGG + chr7_2:87405080-87405099 None:intergenic 35.0%
ACCATCAATAGGTTTAGCTA+GGG + chr7_2:87405403-87405422 None:intergenic 35.0%
AAATTTCAGCTTCGGAATCT+CGG - chr7_2:87405430-87405449 Msa1086450:intron 35.0%
GCCAGCGAGAATTAATTATT+GGG - chr7_2:87405556-87405575 Msa1086450:CDS 35.0%
CCAGCGAGAATTAATTATTG+GGG - chr7_2:87405557-87405576 Msa1086450:CDS 35.0%
TGATTAAAGTGTGACGTTCA+CGG + chr7_2:87405827-87405846 None:intergenic 35.0%
TTAAGTTCTCAGTTAGGTGA+AGG - chr7_2:87405980-87405999 Msa1086450:CDS 35.0%
! GATTCCAGCATTGAATAGAT+CGG + chr7_2:87406110-87406129 None:intergenic 35.0%
AATCAGACCAGCTATTAATG+TGG - chr7_2:87406126-87406145 Msa1086450:intron 35.0%
ATCAGACCAGCTATTAATGT+GGG - chr7_2:87406127-87406146 Msa1086450:intron 35.0%
GAAATACCCACATTAATAGC+TGG + chr7_2:87406136-87406155 None:intergenic 35.0%
! ACAGGTACTGTACTTCAAGT+AGG - chr7_2:87405154-87405173 Msa1086450:CDS 40.0%
!! GAATTTGAAGAGGGTACTGT+AGG - chr7_2:87405232-87405251 Msa1086450:CDS 40.0%
! CTGTAGGCATTGCTTTGAAT+TGG - chr7_2:87405248-87405267 Msa1086450:CDS 40.0%
! GGTGTTGTATTAATGGGTGA+TGG - chr7_2:87405285-87405304 Msa1086450:CDS 40.0%
!! TGATGGTTTGCTGATACAAG+AGG - chr7_2:87405302-87405321 Msa1086450:CDS 40.0%
!! GATGGTTTGCTGATACAAGA+GGG - chr7_2:87405303-87405322 Msa1086450:CDS 40.0%
ACCAGTAAGTGAGGGTTATT+TGG - chr7_2:87405362-87405381 Msa1086450:intron 40.0%
CCAGTAAGTGAGGGTTATTT+GGG - chr7_2:87405363-87405382 Msa1086450:intron 40.0%
GACCATCAATAGGTTTAGCT+AGG + chr7_2:87405404-87405423 None:intergenic 40.0%
ATTTCTCCTCGACCATCAAT+AGG + chr7_2:87405414-87405433 None:intergenic 40.0%
TCGAGGAGAAATTTCAGCTT+CGG - chr7_2:87405422-87405441 Msa1086450:intron 40.0%
GAACGTCTGGAAATAATACC+GGG + chr7_2:87405474-87405493 None:intergenic 40.0%
GGAACGTCTGGAAATAATAC+CGG + chr7_2:87405475-87405494 None:intergenic 40.0%
GGCCAGCGAGAATTAATTAT+TGG - chr7_2:87405555-87405574 Msa1086450:CDS 40.0%
CCCCAATAATTAATTCTCGC+TGG + chr7_2:87405560-87405579 None:intergenic 40.0%
ATTATTGGGGACAGACAAAC+AGG - chr7_2:87405570-87405589 Msa1086450:CDS 40.0%
!! TGGTCAAAAAGCATCTTCTG+TGG - chr7_2:87405665-87405684 Msa1086450:CDS 40.0%
TTTACAAGAAAGAGGGGCAA+TGG - chr7_2:87405704-87405723 Msa1086450:CDS 40.0%
AGCTGAAACATCTCCTGATT+GGG + chr7_2:87406035-87406054 None:intergenic 40.0%
AAGCTGAAACATCTCCTGAT+TGG + chr7_2:87406036-87406055 None:intergenic 40.0%
TTTACCAGCTACCTGTTTCA+TGG + chr7_2:87406194-87406213 None:intergenic 40.0%
! ACAGGTACTGTACTTCAAGT+AGG - chr7_2:87405154-87405173 Msa1086450:CDS 40.0%
!! GAATTTGAAGAGGGTACTGT+AGG - chr7_2:87405232-87405251 Msa1086450:CDS 40.0%
! CTGTAGGCATTGCTTTGAAT+TGG - chr7_2:87405248-87405267 Msa1086450:CDS 40.0%
! GGTGTTGTATTAATGGGTGA+TGG - chr7_2:87405285-87405304 Msa1086450:CDS 40.0%
!! TGATGGTTTGCTGATACAAG+AGG - chr7_2:87405302-87405321 Msa1086450:CDS 40.0%
!! GATGGTTTGCTGATACAAGA+GGG - chr7_2:87405303-87405322 Msa1086450:CDS 40.0%
ACCAGTAAGTGAGGGTTATT+TGG - chr7_2:87405362-87405381 Msa1086450:intron 40.0%
CCAGTAAGTGAGGGTTATTT+GGG - chr7_2:87405363-87405382 Msa1086450:intron 40.0%
GACCATCAATAGGTTTAGCT+AGG + chr7_2:87405404-87405423 None:intergenic 40.0%
ATTTCTCCTCGACCATCAAT+AGG + chr7_2:87405414-87405433 None:intergenic 40.0%
TCGAGGAGAAATTTCAGCTT+CGG - chr7_2:87405422-87405441 Msa1086450:intron 40.0%
GAACGTCTGGAAATAATACC+GGG + chr7_2:87405474-87405493 None:intergenic 40.0%
GGAACGTCTGGAAATAATAC+CGG + chr7_2:87405475-87405494 None:intergenic 40.0%
GGCCAGCGAGAATTAATTAT+TGG - chr7_2:87405555-87405574 Msa1086450:CDS 40.0%
CCCCAATAATTAATTCTCGC+TGG + chr7_2:87405560-87405579 None:intergenic 40.0%
ATTATTGGGGACAGACAAAC+AGG - chr7_2:87405570-87405589 Msa1086450:CDS 40.0%
!! TGGTCAAAAAGCATCTTCTG+TGG - chr7_2:87405665-87405684 Msa1086450:CDS 40.0%
TTTACAAGAAAGAGGGGCAA+TGG - chr7_2:87405704-87405723 Msa1086450:CDS 40.0%
AGCTGAAACATCTCCTGATT+GGG + chr7_2:87406035-87406054 None:intergenic 40.0%
AAGCTGAAACATCTCCTGAT+TGG + chr7_2:87406036-87406055 None:intergenic 40.0%
TTTACCAGCTACCTGTTTCA+TGG + chr7_2:87406194-87406213 None:intergenic 40.0%
ACTGTACTTCAAGTAGGCGA+CGG - chr7_2:87405160-87405179 Msa1086450:CDS 45.0%
GACGGCATTGCTCGTATTTA+TGG - chr7_2:87405178-87405197 Msa1086450:CDS 45.0%
GGTCTTGATGAAGTAATGGC+AGG - chr7_2:87405199-87405218 Msa1086450:CDS 45.0%
GCTGATACAAGAGGGAAGTT+CGG - chr7_2:87405311-87405330 Msa1086450:CDS 45.0%
GGAAGTTCGGTAAAAGCAAC+AGG - chr7_2:87405324-87405343 Msa1086450:CDS 45.0%
TGCTCAGATACCAGTAAGTG+AGG - chr7_2:87405353-87405372 Msa1086450:CDS 45.0%
GCTCAGATACCAGTAAGTGA+GGG - chr7_2:87405354-87405373 Msa1086450:CDS 45.0%
CCCAAATAACCCTCACTTAC+TGG + chr7_2:87405366-87405385 None:intergenic 45.0%
GCCCTAGCTAAACCTATTGA+TGG - chr7_2:87405399-87405418 Msa1086450:intron 45.0%
! GCTAAACCTATTGATGGTCG+AGG - chr7_2:87405405-87405424 Msa1086450:intron 45.0%
TCTGGAAATAATACCGGGAG+CGG + chr7_2:87405469-87405488 None:intergenic 45.0%
CGTTTGAAGAGGCTCATACA+CGG + chr7_2:87405496-87405515 None:intergenic 45.0%
CGTGTATGAGCCTCTTCAAA+CGG - chr7_2:87405494-87405513 Msa1086450:CDS 45.0%
GTGTATGAGCCTCTTCAAAC+GGG - chr7_2:87405495-87405514 Msa1086450:CDS 45.0%
GCAATAAGTCCCGTTTGAAG+AGG + chr7_2:87405507-87405526 None:intergenic 45.0%
!! GCGAGGTATTGTAATGTAGC+TGG + chr7_2:87405765-87405784 None:intergenic 45.0%
CAATACCTCGCTCCTTATAC+AGG - chr7_2:87405774-87405793 Msa1086450:CDS 45.0%
TAAGCCTGTGCTTGTTTGGA+GGG + chr7_2:87405861-87405880 None:intergenic 45.0%
ATAAGCCTGTGCTTGTTTGG+AGG + chr7_2:87405862-87405881 None:intergenic 45.0%
CTTCTATTACGAAGACCACC+AGG - chr7_2:87405894-87405913 Msa1086450:CDS 45.0%
CCTGATTGGGTCTCAACTAT+TGG + chr7_2:87406022-87406041 None:intergenic 45.0%
CCAATAGTTGAGACCCAATC+AGG - chr7_2:87406019-87406038 Msa1086450:CDS 45.0%
TCTGCCGATCTATTCAATGC+TGG - chr7_2:87406103-87406122 Msa1086450:intron 45.0%
GGTATTTCCGTTTCCAGAGT+TGG - chr7_2:87406148-87406167 Msa1086450:intron 45.0%
TTCCGTTTCCAGAGTTGGAT+CGG - chr7_2:87406153-87406172 Msa1086450:intron 45.0%
AAAGCCATGAAACAGGTAGC+TGG - chr7_2:87406187-87406206 Msa1086450:CDS 45.0%
ACTGTACTTCAAGTAGGCGA+CGG - chr7_2:87405160-87405179 Msa1086450:CDS 45.0%
GACGGCATTGCTCGTATTTA+TGG - chr7_2:87405178-87405197 Msa1086450:CDS 45.0%
GGTCTTGATGAAGTAATGGC+AGG - chr7_2:87405199-87405218 Msa1086450:CDS 45.0%
GCTGATACAAGAGGGAAGTT+CGG - chr7_2:87405311-87405330 Msa1086450:CDS 45.0%
GGAAGTTCGGTAAAAGCAAC+AGG - chr7_2:87405324-87405343 Msa1086450:CDS 45.0%
TGCTCAGATACCAGTAAGTG+AGG - chr7_2:87405353-87405372 Msa1086450:CDS 45.0%
GCTCAGATACCAGTAAGTGA+GGG - chr7_2:87405354-87405373 Msa1086450:CDS 45.0%
CCCAAATAACCCTCACTTAC+TGG + chr7_2:87405366-87405385 None:intergenic 45.0%
GCCCTAGCTAAACCTATTGA+TGG - chr7_2:87405399-87405418 Msa1086450:intron 45.0%
! GCTAAACCTATTGATGGTCG+AGG - chr7_2:87405405-87405424 Msa1086450:intron 45.0%
TCTGGAAATAATACCGGGAG+CGG + chr7_2:87405469-87405488 None:intergenic 45.0%
CGTTTGAAGAGGCTCATACA+CGG + chr7_2:87405496-87405515 None:intergenic 45.0%
CGTGTATGAGCCTCTTCAAA+CGG - chr7_2:87405494-87405513 Msa1086450:CDS 45.0%
GTGTATGAGCCTCTTCAAAC+GGG - chr7_2:87405495-87405514 Msa1086450:CDS 45.0%
GCAATAAGTCCCGTTTGAAG+AGG + chr7_2:87405507-87405526 None:intergenic 45.0%
!! GCGAGGTATTGTAATGTAGC+TGG + chr7_2:87405765-87405784 None:intergenic 45.0%
CAATACCTCGCTCCTTATAC+AGG - chr7_2:87405774-87405793 Msa1086450:CDS 45.0%
TAAGCCTGTGCTTGTTTGGA+GGG + chr7_2:87405861-87405880 None:intergenic 45.0%
ATAAGCCTGTGCTTGTTTGG+AGG + chr7_2:87405862-87405881 None:intergenic 45.0%
CTTCTATTACGAAGACCACC+AGG - chr7_2:87405894-87405913 Msa1086450:CDS 45.0%
CCTGATTGGGTCTCAACTAT+TGG + chr7_2:87406022-87406041 None:intergenic 45.0%
CCAATAGTTGAGACCCAATC+AGG - chr7_2:87406019-87406038 Msa1086450:CDS 45.0%
TCTGCCGATCTATTCAATGC+TGG - chr7_2:87406103-87406122 Msa1086450:intron 45.0%
GGTATTTCCGTTTCCAGAGT+TGG - chr7_2:87406148-87406167 Msa1086450:intron 45.0%
TTCCGTTTCCAGAGTTGGAT+CGG - chr7_2:87406153-87406172 Msa1086450:intron 45.0%
AAAGCCATGAAACAGGTAGC+TGG - chr7_2:87406187-87406206 Msa1086450:CDS 45.0%
TTAATCGAATCTCCCGCTCC+CGG - chr7_2:87405453-87405472 Msa1086450:intron 50.0%
CTGGAAATAATACCGGGAGC+GGG + chr7_2:87405468-87405487 None:intergenic 50.0%
TCTATGATCCCTATAGGGCG+TGG - chr7_2:87405534-87405553 Msa1086450:CDS 50.0%
AGCATCTTCTGTGGCTCAAG+TGG - chr7_2:87405674-87405693 Msa1086450:CDS 50.0%
TCCTTATACAGGTGCAGCTC+TGG - chr7_2:87405785-87405804 Msa1086450:CDS 50.0%
GCGATAAGCCTGTGCTTGTT+TGG + chr7_2:87405865-87405884 None:intergenic 50.0%
TTAATCGAATCTCCCGCTCC+CGG - chr7_2:87405453-87405472 Msa1086450:intron 50.0%
CTGGAAATAATACCGGGAGC+GGG + chr7_2:87405468-87405487 None:intergenic 50.0%
TCTATGATCCCTATAGGGCG+TGG - chr7_2:87405534-87405553 Msa1086450:CDS 50.0%
AGCATCTTCTGTGGCTCAAG+TGG - chr7_2:87405674-87405693 Msa1086450:CDS 50.0%
TCCTTATACAGGTGCAGCTC+TGG - chr7_2:87405785-87405804 Msa1086450:CDS 50.0%
GCGATAAGCCTGTGCTTGTT+TGG + chr7_2:87405865-87405884 None:intergenic 50.0%
AGGCTCATACACGGAACGTC+TGG + chr7_2:87405487-87405506 None:intergenic 55.0%
CTGCACCTGTATAAGGAGCG+AGG + chr7_2:87405782-87405801 None:intergenic 55.0%
GCCAGAGCTGCACCTGTATA+AGG + chr7_2:87405789-87405808 None:intergenic 55.0%
CGATCCCTCCAAACAAGCAC+AGG - chr7_2:87405854-87405873 Msa1086450:CDS 55.0%
! CGCCGATCCAACTCTGGAAA+CGG + chr7_2:87406158-87406177 None:intergenic 55.0%
CGTTTCCAGAGTTGGATCGG+CGG - chr7_2:87406156-87406175 Msa1086450:CDS 55.0%
AGGCTCATACACGGAACGTC+TGG + chr7_2:87405487-87405506 None:intergenic 55.0%
CTGCACCTGTATAAGGAGCG+AGG + chr7_2:87405782-87405801 None:intergenic 55.0%
GCCAGAGCTGCACCTGTATA+AGG + chr7_2:87405789-87405808 None:intergenic 55.0%
CGATCCCTCCAAACAAGCAC+AGG - chr7_2:87405854-87405873 Msa1086450:CDS 55.0%
! CGCCGATCCAACTCTGGAAA+CGG + chr7_2:87406158-87406177 None:intergenic 55.0%
CGTTTCCAGAGTTGGATCGG+CGG - chr7_2:87406156-87406175 Msa1086450:CDS 55.0%
TTGAGCCGCCGATCCAACTC+TGG + chr7_2:87406164-87406183 None:intergenic 60.0%
TTGAGCCGCCGATCCAACTC+TGG + chr7_2:87406164-87406183 None:intergenic 60.0%
CTCGCTGGCCACGCCCTATA+GGG + chr7_2:87405545-87405564 None:intergenic 65.0%
TCTCGCTGGCCACGCCCTAT+AGG + chr7_2:87405546-87405565 None:intergenic 65.0%
GGATACGCTTCGCGACCTGG+TGG + chr7_2:87405912-87405931 None:intergenic 65.0%
CCAGGTCGCGAAGCGTATCC+CGG - chr7_2:87405912-87405931 Msa1086450:CDS 65.0%
CTCGCTGGCCACGCCCTATA+GGG + chr7_2:87405545-87405564 None:intergenic 65.0%
TCTCGCTGGCCACGCCCTAT+AGG + chr7_2:87405546-87405565 None:intergenic 65.0%
GGATACGCTTCGCGACCTGG+TGG + chr7_2:87405912-87405931 None:intergenic 65.0%
CCAGGTCGCGAAGCGTATCC+CGG - chr7_2:87405912-87405931 Msa1086450:CDS 65.0%
CCGGGATACGCTTCGCGACC+TGG + chr7_2:87405915-87405934 None:intergenic 70.0%
CCGGGATACGCTTCGCGACC+TGG + chr7_2:87405915-87405934 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 87405070 87406306 87405070 ID=Msa1086450;Name=Msa1086450
chr7_2 mRNA 87405070 87406306 87405070 ID=Msa1086450-mRNA-1;Parent=Msa1086450;Name=Msa1086450-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0|0|1|1|0.66|3|0|352
chr7_2 exon 87406156 87406306 87406156 ID=Msa1086450-mRNA-1:exon:23799;Parent=Msa1086450-mRNA-1
chr7_2 exon 87405461 87406054 87405461 ID=Msa1086450-mRNA-1:exon:23798;Parent=Msa1086450-mRNA-1
chr7_2 exon 87405070 87405380 87405070 ID=Msa1086450-mRNA-1:exon:23797;Parent=Msa1086450-mRNA-1
chr7_2 CDS 87406156 87406306 87406156 ID=Msa1086450-mRNA-1:cds;Parent=Msa1086450-mRNA-1
chr7_2 CDS 87405461 87406054 87405461 ID=Msa1086450-mRNA-1:cds;Parent=Msa1086450-mRNA-1
chr7_2 CDS 87405070 87405380 87405070 ID=Msa1086450-mRNA-1:cds;Parent=Msa1086450-mRNA-1
Gene Sequence

>Msa1086450

ATGGTAACCATTCGTGCAGATGAAATTAGTAAAATTATCCGTGAACGTATTGAGCAATATAATACCGAAGTAAAAATTGTAAATACAGGTACTGTACTTCAAGTAGGCGACGGCATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCAGAGGGAAGTTCGGTAAAAGCAACAGGAAGAATTGCTCAGATACCAGTAAGTGAGGGTTATTTGGGTCGTGTTGTAAATGCCCTAGCTAAACCTATTGATGGTCGAGGAGAAATTTCAGCTTCGGAATCTCGGTTAATCGAATCTCCCGCTCCCGGTATTATTTCCAGACGTTCCGTGTATGAGCCTCTTCAAACGGGACTTATTGCTATTGATTCTATGATCCCTATAGGGCGTGGCCAGCGAGAATTAATTATTGGGGACAGACAAACAGGTAAAACAGCAGTAGCAACAGATACAATTCTCAATCAACAGGGACAAAATGTAATATGTGTTTATGTAGCTATTGGTCAAAAAGCATCTTCTGTGGCTCAAGTGGTAACTACTTTACAAGAAAGAGGGGCAATGGAGTACACTATTATAGTGGCTGAAACAGCAAATTCTCCAGCTACATTACAATACCTCGCTCCTTATACAGGTGCAGCTCTGGCTGAATATTTTATGTACCGTGAACGTCACACTTTAATCATTTATGACGATCCCTCCAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCAGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACAGATGGCCAAATATTTTTATCTGCCGATCTATTCAATGCTGGAATCAGACCAGCTATTAATGTGGGTATTTCCGTTTCCAGAGTTGGATCGGCGGCTCAAATTAAAGCCATGAAACAGGTAGCTGGTAAATTAAAATTGGAATTGGCACAATTCGCAGAATTAGAAGCTTTTGCACAATTCGCTTCTGATCTCGATAAAGCTACGCAAAATCAATTGGCAAGA

Protein sequence

>Msa1086450

MVTIRADEISKIIRERIEQYNTEVKIVNTGTVLQVGDGIARIYGLDEVMAEGSSVKATGRIAQIPVSEGYLGRVVNALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIIVAETANSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDPSKQAQAYRQMSLLLRRPPGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLAR