AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0931190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0931190 MtrunA17_CPg0492851 87.385 325 1 2 65 349 1 325 0.0 557
Msa0931190 MtrunA17_Chr4g0015731 87.385 325 1 2 65 349 1 325 0.0 557
Msa0931190 MtrunA17_Chr4g0016821 87.385 325 1 2 65 349 1 325 0.0 557
Msa0931190 MtrunA17_Chr4g0016981 76.596 94 3 2 108 197 42 120 6.72e-40 137
Msa0931190 MtrunA17_Chr4g0016991 95.385 65 3 0 285 349 1 65 1.85e-36 126
Msa0931190 MtrunA17_Chr5g0403621 96.667 60 2 0 1 60 86 145 2.84e-35 126
Msa0931190 MtrunA17_CPg0492871 98.333 60 1 0 1 60 86 145 1.54e-34 126
Msa0931190 MtrunA17_Chr4g0015721 98.333 60 1 0 1 60 86 145 1.54e-34 126
Msa0931190 MtrunA17_Chr4g0016811 98.333 60 1 0 1 60 95 154 1.66e-34 126
Msa0931190 MtrunA17_Chr3g0141111 94.737 57 3 0 1 57 15 71 1.55e-32 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0931190 ATCG00540.1 79.688 320 25 2 70 349 1 320 1.61e-178 498
Msa0931190 ATCG00530.1 67.241 58 19 0 3 60 88 145 1.61e-18 84.0

Find 76 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTGGCATCTATTATTT+TGG 0.108321 6_2:-80373096 Msa0931190:CDS
TTCTAAGTGGTTATTCTATT+AGG 0.170612 6_2:-80374512 Msa0931190:CDS
ACAAGGTCTGTTGTTCTTCT+TGG 0.210830 6_2:-80373111 Msa0931190:CDS
TCTAAGTGGTTATTCTATTA+GGG 0.213858 6_2:-80374511 Msa0931190:CDS
ACATTAGGATTACTCGTTAA+TGG 0.226644 6_2:+80373188 None:intergenic
TAGAATAACCACTTAGAATA+AGG 0.296044 6_2:+80374517 None:intergenic
CTACAGGCTTATTAGCTAAA+TGG 0.299374 6_2:+80373791 None:intergenic
CTATATACGTAGGCGGGAAT+AGG 0.308836 6_2:-80373424 Msa0931190:CDS
AATCCTAATGTGGGTGGATT+TGG 0.318985 6_2:-80373176 Msa0931190:CDS
AACTCATTATTCTTAACTCT+TGG 0.323937 6_2:-80374479 Msa0931190:CDS
AAAATTATACGAAAAGAAAA+AGG 0.339453 6_2:-80373323 Msa0931190:CDS
TATATACGTAGGCGGGAATA+GGG 0.340058 6_2:-80373423 Msa0931190:CDS
CTATTCCCGCCTACGTATAT+AGG 0.341092 6_2:+80373425 None:intergenic
GTTAAACAAGTTCTTGCTAA+TGG 0.346567 6_2:-80373694 Msa0931190:CDS
GGTTGTTCGTCTCTATCAAT+TGG 0.367131 6_2:+80374589 None:intergenic
CCCTCTGAAACAAGAAGTTC+TGG 0.373836 6_2:+80373233 None:intergenic
TAATGTGGGTGGATTTGGTC+AGG 0.386047 6_2:-80373171 Msa0931190:CDS
TGACCAAATCCACCCACATT+AGG 0.412065 6_2:+80373173 None:intergenic
TGTTTAACTTGCATATCATA+AGG 0.412925 6_2:+80373709 None:intergenic
ACTCATTATTCTTAACTCTT+GGG 0.414290 6_2:-80374478 Msa0931190:CDS
AATGGGATATGCATTTGAAA+TGG 0.432612 6_2:+80373876 None:intergenic
GTTTATAATGCTACAGCAAC+AGG 0.436701 6_2:-80373356 Msa0931190:CDS
GATCATGAGCAATACGGAAA+TGG 0.442149 6_2:+80373918 None:intergenic
AAATCGTATGGATACGGTCT+TGG 0.446811 6_2:+80374568 None:intergenic
TTATTACTCTTGCTCCCGTC+GGG 0.465288 6_2:+80373383 None:intergenic
ATATGTTTCCTTATTCTAAG+TGG 0.468100 6_2:-80374525 Msa0931190:CDS
TACAGAAATGCAAAATCGTA+TGG 0.481344 6_2:+80374556 None:intergenic
ACTGCTTCAAATACAGTATC+GGG 0.488265 6_2:+80373742 None:intergenic
AAAAGCATTTCTAGTTTGCA+TGG 0.489913 6_2:+80373969 None:intergenic
TGGATACGAAATAACGATAG+TGG 0.491690 6_2:-80373300 Msa0931190:CDS
AACTGCTTCAAATACAGTAT+CGG 0.494328 6_2:+80373741 None:intergenic
ATGGGATATGCATTTGAAAT+GGG 0.502392 6_2:+80373877 None:intergenic
GAGCAATACGGAAATGGATC+GGG 0.505456 6_2:+80373924 None:intergenic
CAAGATCCGTTACGTGTACA+AGG 0.506414 6_2:-80373128 Msa0931190:CDS
TATATAGATCATGAGCAATA+CGG 0.512581 6_2:+80373912 None:intergenic
ATCCGCCCGGTAGCTTCTCT+CGG 0.516777 6_2:+80373829 None:intergenic
AATATCCTATATACGTAGGC+GGG 0.517081 6_2:-80373430 Msa0931190:CDS
ATGTGGGTGGATTTGGTCAG+GGG 0.523100 6_2:-80373169 Msa0931190:CDS
ATTATTACTCTTGCTCCCGT+CGG 0.527873 6_2:+80373382 None:intergenic
CCAGAACTTCTTGTTTCAGA+GGG 0.530598 6_2:-80373233 Msa0931190:CDS
AATGTGGGTGGATTTGGTCA+GGG 0.534197 6_2:-80373170 Msa0931190:CDS
ATCTCGGGCGAAATACGATC+AGG 0.534200 6_2:+80373607 None:intergenic
CTAAGTGGTTATTCTATTAG+GGG 0.545375 6_2:-80374510 Msa0931190:CDS
GAAACAAGAAGTTCTGGTCC+TGG 0.545439 6_2:+80373239 None:intergenic
GTAGGCGGGAATAGGGGAAG+GGG 0.547797 6_2:-80373416 Msa0931190:CDS
AATGCAAAATCGTATGGATA+CGG 0.548969 6_2:+80374562 None:intergenic
GTGAACATCTCTCTTAGTAG+CGG 0.549431 6_2:+80373460 None:intergenic
ACCAGAACTTCTTGTTTCAG+AGG 0.553828 6_2:-80373234 Msa0931190:CDS
AAAATCCGAGAGAAGCTACC+GGG 0.554646 6_2:-80373834 Msa0931190:CDS
TGAGCAATACGGAAATGGAT+CGG 0.555873 6_2:+80373923 None:intergenic
GTGATTGATATTATACCGCC+AGG 0.566218 6_2:-80373257 Msa0931190:CDS
TGAACATCTCTCTTAGTAGC+GGG 0.566429 6_2:+80373461 None:intergenic
ATTAACGAGTAATCCTAATG+TGG 0.573726 6_2:-80373186 Msa0931190:CDS
GGGGCCAATTCAAAACCCTC+TGG 0.574508 6_2:+80373631 None:intergenic
GGGGTCAGATTTATCCCGAC+GGG 0.575656 6_2:-80373397 Msa0931190:CDS
ACGTAGGCGGGAATAGGGGA+AGG 0.589088 6_2:-80373418 Msa0931190:CDS
ACGATAGTGGATGCATCGGA+TGG 0.592008 6_2:-80373287 Msa0931190:CDS
AACAGACCTTGTACACGTAA+CGG 0.600684 6_2:+80373122 None:intergenic
GAAAATCCGAGAGAAGCTAC+CGG 0.606144 6_2:-80373835 Msa0931190:CDS
TGTGGGTGGATTTGGTCAGG+GGG 0.611690 6_2:-80373168 Msa0931190:CDS
AAATATCCTATATACGTAGG+CGG 0.616381 6_2:-80373431 Msa0931190:CDS
TTAAAATATCCTATATACGT+AGG 0.623794 6_2:-80373434 Msa0931190:CDS
ACGAGTAATCCTAATGTGGG+TGG 0.626177 6_2:-80373182 Msa0931190:CDS
TCGGGCGAAATACGATCAGG+AGG 0.629985 6_2:+80373610 None:intergenic
ATTAGCACATACAATCCGCC+CGG 0.633238 6_2:+80373816 None:intergenic
AATAACGATAGTGGATGCAT+CGG 0.634066 6_2:-80373291 Msa0931190:CDS
ATATACGTAGGCGGGAATAG+GGG 0.641009 6_2:-80373422 Msa0931190:CDS
CGTAGGCGGGAATAGGGGAA+GGG 0.650670 6_2:-80373417 Msa0931190:CDS
TTAACGAGTAATCCTAATGT+GGG 0.652400 6_2:-80373185 Msa0931190:CDS
AGATATTGAGGTTCCACAAG+CGG 0.653295 6_2:-80373770 Msa0931190:intron
CGGGCGAAATACGATCAGGA+GGG 0.656521 6_2:+80373611 None:intergenic
GGGCGAAATACGATCAGGAG+GGG 0.658846 6_2:+80373612 None:intergenic
AGGGGTCAGATTTATCCCGA+CGG 0.672516 6_2:-80373398 Msa0931190:CDS
GTATCGGGAAGTACCGCTTG+TGG 0.687149 6_2:+80373757 None:intergenic
ACAAGAAGTTCTGGTCCTGG+CGG 0.692543 6_2:+80373242 None:intergenic
ATCCGAGAGAAGCTACCGGG+CGG 0.767274 6_2:-80373831 Msa0931190:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATAAATCAGTTAATAAA+AGG + chr6_2:80373237-80373256 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG - chr6_2:80373238-80373257 Msa0931190:CDS 15.0%
!!! TAGATACAATTTTAAAATAC+TGG - chr6_2:80373374-80373393 Msa0931190:CDS 15.0%
!! AAAATTTCTACAATAAGATT+AGG + chr6_2:80373634-80373653 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG - chr6_2:80374317-80374336 Msa0931190:intron 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG - chr6_2:80374586-80374605 Msa0931190:CDS 15.0%
!! TACATAAATCAGTTAATAAA+AGG + chr6_2:80373237-80373256 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG - chr6_2:80373238-80373257 Msa0931190:CDS 15.0%
!!! TAGATACAATTTTAAAATAC+TGG - chr6_2:80373374-80373393 Msa0931190:CDS 15.0%
!! AAAATTTCTACAATAAGATT+AGG + chr6_2:80373634-80373653 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG - chr6_2:80374317-80374336 Msa0931190:intron 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG - chr6_2:80374586-80374605 Msa0931190:CDS 15.0%
!!! AAAATTGTATCTAAAATGAC+TGG + chr6_2:80373367-80373386 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG + chr6_2:80373475-80373494 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG + chr6_2:80373566-80373585 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG - chr6_2:80373635-80373654 Msa0931190:CDS 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG + chr6_2:80374052-80374071 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTGT+GGG + chr6_2:80374099-80374118 None:intergenic 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG - chr6_2:80374101-80374120 Msa0931190:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG - chr6_2:80374206-80374225 Msa0931190:intron 20.0%
!!! AAAATTGTATCTAAAATGAC+TGG + chr6_2:80373367-80373386 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG + chr6_2:80373475-80373494 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG + chr6_2:80373566-80373585 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG - chr6_2:80373635-80373654 Msa0931190:CDS 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG + chr6_2:80374052-80374071 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTGT+GGG + chr6_2:80374099-80374118 None:intergenic 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG - chr6_2:80374101-80374120 Msa0931190:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG - chr6_2:80374206-80374225 Msa0931190:intron 20.0%
! ATATGTTTCCTTATTCTAAG+TGG - chr6_2:80373115-80373134 Msa0931190:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG + chr6_2:80373126-80373145 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG - chr6_2:80373128-80373147 Msa0931190:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG - chr6_2:80373129-80373148 Msa0931190:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG - chr6_2:80373161-80373180 Msa0931190:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG - chr6_2:80373162-80373181 Msa0931190:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG - chr6_2:80373325-80373344 Msa0931190:CDS 25.0%
! GAGATACACGATTTAAATAA+CGG + chr6_2:80373405-80373424 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG - chr6_2:80373584-80373603 Msa0931190:intron 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG - chr6_2:80373589-80373608 Msa0931190:intron 25.0%
!!! AAATAGCAGAATAATGGATA+GGG - chr6_2:80373590-80373609 Msa0931190:intron 25.0%
! TTTCTACAATAAGATTAGGT+AGG + chr6_2:80373630-80373649 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG - chr6_2:80373647-80373666 Msa0931190:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG - chr6_2:80373677-80373696 Msa0931190:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG - chr6_2:80373684-80373703 Msa0931190:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG + chr6_2:80373731-80373750 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG + chr6_2:80373934-80373953 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG - chr6_2:80373956-80373975 Msa0931190:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG + chr6_2:80374051-80374070 None:intergenic 25.0%
!!! CCACAAGAATATTTTTTTTG+TGG + chr6_2:80374100-80374119 None:intergenic 25.0%
! CCACAAAAAAAATATTCTTG+TGG - chr6_2:80374097-80374116 Msa0931190:intron 25.0%
! ATTATACGAAAAGAAAAAGG+TGG - chr6_2:80374320-80374339 Msa0931190:intron 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG - chr6_2:80374559-80374578 Msa0931190:CDS 25.0%
! ATATGTTTCCTTATTCTAAG+TGG - chr6_2:80373115-80373134 Msa0931190:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG + chr6_2:80373126-80373145 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG - chr6_2:80373128-80373147 Msa0931190:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG - chr6_2:80373129-80373148 Msa0931190:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG - chr6_2:80373161-80373180 Msa0931190:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG - chr6_2:80373162-80373181 Msa0931190:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG - chr6_2:80373325-80373344 Msa0931190:CDS 25.0%
! GAGATACACGATTTAAATAA+CGG + chr6_2:80373405-80373424 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG - chr6_2:80373584-80373603 Msa0931190:intron 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG - chr6_2:80373589-80373608 Msa0931190:intron 25.0%
!!! AAATAGCAGAATAATGGATA+GGG - chr6_2:80373590-80373609 Msa0931190:intron 25.0%
! TTTCTACAATAAGATTAGGT+AGG + chr6_2:80373630-80373649 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG - chr6_2:80373647-80373666 Msa0931190:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG - chr6_2:80373677-80373696 Msa0931190:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG - chr6_2:80373684-80373703 Msa0931190:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG + chr6_2:80373731-80373750 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG + chr6_2:80373934-80373953 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG - chr6_2:80373956-80373975 Msa0931190:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG + chr6_2:80374051-80374070 None:intergenic 25.0%
!!! CCACAAGAATATTTTTTTTG+TGG + chr6_2:80374100-80374119 None:intergenic 25.0%
! CCACAAAAAAAATATTCTTG+TGG - chr6_2:80374097-80374116 Msa0931190:intron 25.0%
! ATTATACGAAAAGAAAAAGG+TGG - chr6_2:80374320-80374339 Msa0931190:intron 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG - chr6_2:80374559-80374578 Msa0931190:CDS 25.0%
AATGCAAAATCGTATGGATA+CGG + chr6_2:80373081-80373100 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG + chr6_2:80373087-80373106 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG - chr6_2:80373130-80373149 Msa0931190:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG + chr6_2:80373359-80373378 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG + chr6_2:80373427-80373446 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG - chr6_2:80373553-80373572 Msa0931190:intron 30.0%
AATAAGATTAGGTAGGTTAC+TGG + chr6_2:80373623-80373642 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG + chr6_2:80373674-80373693 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG + chr6_2:80373766-80373785 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG + chr6_2:80373767-80373786 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG - chr6_2:80373858-80373877 Msa0931190:CDS 30.0%
AACTGCTTCAAATACAGTAT+CGG + chr6_2:80373902-80373921 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG - chr6_2:80373946-80373965 Msa0931190:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG - chr6_2:80373955-80373974 Msa0931190:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG - chr6_2:80373957-80373976 Msa0931190:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG - chr6_2:80374048-80374067 Msa0931190:intron 30.0%
ATTTCACTATATTTCTTCCC+AGG + chr6_2:80374134-80374153 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG - chr6_2:80374209-80374228 Msa0931190:intron 30.0%
ACATTAGGATTACTCGTTAA+TGG + chr6_2:80374455-80374474 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG - chr6_2:80374454-80374473 Msa0931190:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG - chr6_2:80374455-80374474 Msa0931190:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG - chr6_2:80374544-80374563 Msa0931190:CDS 30.0%
AATGCAAAATCGTATGGATA+CGG + chr6_2:80373081-80373100 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG + chr6_2:80373087-80373106 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG - chr6_2:80373130-80373149 Msa0931190:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG + chr6_2:80373359-80373378 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG + chr6_2:80373427-80373446 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG - chr6_2:80373553-80373572 Msa0931190:intron 30.0%
AATAAGATTAGGTAGGTTAC+TGG + chr6_2:80373623-80373642 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG + chr6_2:80373674-80373693 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG + chr6_2:80373766-80373785 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG + chr6_2:80373767-80373786 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG - chr6_2:80373858-80373877 Msa0931190:CDS 30.0%
AACTGCTTCAAATACAGTAT+CGG + chr6_2:80373902-80373921 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG - chr6_2:80373946-80373965 Msa0931190:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG - chr6_2:80373955-80373974 Msa0931190:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG - chr6_2:80373957-80373976 Msa0931190:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG - chr6_2:80374048-80374067 Msa0931190:intron 30.0%
ATTTCACTATATTTCTTCCC+AGG + chr6_2:80374134-80374153 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG - chr6_2:80374209-80374228 Msa0931190:intron 30.0%
ACATTAGGATTACTCGTTAA+TGG + chr6_2:80374455-80374474 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG - chr6_2:80374454-80374473 Msa0931190:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG - chr6_2:80374455-80374474 Msa0931190:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG - chr6_2:80374544-80374563 Msa0931190:CDS 30.0%
ATAGGATTCCATTCAACTCA+TGG - chr6_2:80373256-80373275 Msa0931190:CDS 35.0%
ATTCCATTCAACTCATGGTT+GGG - chr6_2:80373261-80373280 Msa0931190:CDS 35.0%
ATGGTTGGGAACTAATGATT+GGG - chr6_2:80373275-80373294 Msa0931190:CDS 35.0%
! GGGTCTGTCTATAAAGATTT+TGG - chr6_2:80373295-80373314 Msa0931190:CDS 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG - chr6_2:80373777-80373796 Msa0931190:intron 35.0%
!! TATCCCATTTTTGCTCAACA+GGG - chr6_2:80373778-80373797 Msa0931190:intron 35.0%
TAACCCTGTTGAGCAAAAAT+GGG + chr6_2:80373784-80373803 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG + chr6_2:80373785-80373804 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG + chr6_2:80373852-80373871 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG + chr6_2:80373901-80373920 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG - chr6_2:80373970-80373989 Msa0931190:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG - chr6_2:80373993-80374012 Msa0931190:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG - chr6_2:80373994-80374013 Msa0931190:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG - chr6_2:80374005-80374024 Msa0931190:intron 35.0%
ACTATATTTCTTCCCAGGAA+CGG + chr6_2:80374129-80374148 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG + chr6_2:80374159-80374178 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG - chr6_2:80374210-80374229 Msa0931190:intron 35.0%
GTTTATAATGCTACAGCAAC+AGG - chr6_2:80374284-80374303 Msa0931190:intron 35.0%
TGGATACGAAATAACGATAG+TGG - chr6_2:80374340-80374359 Msa0931190:intron 35.0%
!! AATAACGATAGTGGATGCAT+CGG - chr6_2:80374349-80374368 Msa0931190:intron 35.0%
ATAGGATTCCATTCAACTCA+TGG - chr6_2:80373256-80373275 Msa0931190:CDS 35.0%
ATTCCATTCAACTCATGGTT+GGG - chr6_2:80373261-80373280 Msa0931190:CDS 35.0%
ATGGTTGGGAACTAATGATT+GGG - chr6_2:80373275-80373294 Msa0931190:CDS 35.0%
! GGGTCTGTCTATAAAGATTT+TGG - chr6_2:80373295-80373314 Msa0931190:CDS 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG - chr6_2:80373777-80373796 Msa0931190:intron 35.0%
!! TATCCCATTTTTGCTCAACA+GGG - chr6_2:80373778-80373797 Msa0931190:intron 35.0%
TAACCCTGTTGAGCAAAAAT+GGG + chr6_2:80373784-80373803 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG + chr6_2:80373785-80373804 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG + chr6_2:80373852-80373871 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG + chr6_2:80373901-80373920 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG - chr6_2:80373970-80373989 Msa0931190:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG - chr6_2:80373993-80374012 Msa0931190:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG - chr6_2:80373994-80374013 Msa0931190:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG - chr6_2:80374005-80374024 Msa0931190:intron 35.0%
ACTATATTTCTTCCCAGGAA+CGG + chr6_2:80374129-80374148 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG + chr6_2:80374159-80374178 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG - chr6_2:80374210-80374229 Msa0931190:intron 35.0%
GTTTATAATGCTACAGCAAC+AGG - chr6_2:80374284-80374303 Msa0931190:intron 35.0%
TGGATACGAAATAACGATAG+TGG - chr6_2:80374340-80374359 Msa0931190:intron 35.0%
!! AATAACGATAGTGGATGCAT+CGG - chr6_2:80374349-80374368 Msa0931190:intron 35.0%
GGTTGTTCGTCTCTATCAAT+TGG + chr6_2:80373054-80373073 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG + chr6_2:80373075-80373094 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG - chr6_2:80373260-80373279 Msa0931190:CDS 40.0%
CATGGTTGGGAACTAATGAT+TGG - chr6_2:80373274-80373293 Msa0931190:CDS 40.0%
TGAGCAATACGGAAATGGAT+CGG + chr6_2:80373720-80373739 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG + chr6_2:80373725-80373744 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG + chr6_2:80373868-80373887 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG - chr6_2:80373870-80373889 Msa0931190:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG + chr6_2:80374127-80374146 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG + chr6_2:80374128-80374147 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG + chr6_2:80374182-80374201 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG + chr6_2:80374183-80374202 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG - chr6_2:80374217-80374236 Msa0931190:intron 40.0%
ATTATTACTCTTGCTCCCGT+CGG + chr6_2:80374261-80374280 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG - chr6_2:80374383-80374402 Msa0931190:intron 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG - chr6_2:80374406-80374425 Msa0931190:intron 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG - chr6_2:80374407-80374426 Msa0931190:intron 40.0%
! AATCCTAATGTGGGTGGATT+TGG - chr6_2:80374464-80374483 Msa0931190:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG + chr6_2:80374521-80374540 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG - chr6_2:80374529-80374548 Msa0931190:CDS 40.0%
GGTTGTTCGTCTCTATCAAT+TGG + chr6_2:80373054-80373073 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG + chr6_2:80373075-80373094 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG - chr6_2:80373260-80373279 Msa0931190:CDS 40.0%
CATGGTTGGGAACTAATGAT+TGG - chr6_2:80373274-80373293 Msa0931190:CDS 40.0%
TGAGCAATACGGAAATGGAT+CGG + chr6_2:80373720-80373739 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG + chr6_2:80373725-80373744 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG + chr6_2:80373868-80373887 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG - chr6_2:80373870-80373889 Msa0931190:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG + chr6_2:80374127-80374146 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG + chr6_2:80374128-80374147 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG + chr6_2:80374182-80374201 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG + chr6_2:80374183-80374202 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG - chr6_2:80374217-80374236 Msa0931190:intron 40.0%
ATTATTACTCTTGCTCCCGT+CGG + chr6_2:80374261-80374280 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG - chr6_2:80374383-80374402 Msa0931190:intron 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG - chr6_2:80374406-80374425 Msa0931190:intron 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG - chr6_2:80374407-80374426 Msa0931190:intron 40.0%
! AATCCTAATGTGGGTGGATT+TGG - chr6_2:80374464-80374483 Msa0931190:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG + chr6_2:80374521-80374540 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG - chr6_2:80374529-80374548 Msa0931190:CDS 40.0%
! GTTCCCAACCATGAGTTGAA+TGG + chr6_2:80373267-80373286 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG + chr6_2:80373719-80373738 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG - chr6_2:80373805-80373824 Msa0931190:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG - chr6_2:80373806-80373825 Msa0931190:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG + chr6_2:80373827-80373846 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG + chr6_2:80374218-80374237 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG - chr6_2:80374216-80374235 Msa0931190:intron 45.0%
ATATACGTAGGCGGGAATAG+GGG - chr6_2:80374218-80374237 Msa0931190:intron 45.0%
TTATTACTCTTGCTCCCGTC+GGG + chr6_2:80374260-80374279 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG + chr6_2:80374404-80374423 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG + chr6_2:80374410-80374429 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG - chr6_2:80374458-80374477 Msa0931190:CDS 45.0%
TGACCAAATCCACCCACATT+AGG + chr6_2:80374470-80374489 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG - chr6_2:80374469-80374488 Msa0931190:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG - chr6_2:80374470-80374489 Msa0931190:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG - chr6_2:80374512-80374531 Msa0931190:CDS 45.0%
! GTTCCCAACCATGAGTTGAA+TGG + chr6_2:80373267-80373286 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG + chr6_2:80373719-80373738 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG - chr6_2:80373805-80373824 Msa0931190:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG - chr6_2:80373806-80373825 Msa0931190:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG + chr6_2:80373827-80373846 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG + chr6_2:80374218-80374237 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG - chr6_2:80374216-80374235 Msa0931190:intron 45.0%
ATATACGTAGGCGGGAATAG+GGG - chr6_2:80374218-80374237 Msa0931190:intron 45.0%
TTATTACTCTTGCTCCCGTC+GGG + chr6_2:80374260-80374279 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG + chr6_2:80374404-80374423 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG + chr6_2:80374410-80374429 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG - chr6_2:80374458-80374477 Msa0931190:CDS 45.0%
TGACCAAATCCACCCACATT+AGG + chr6_2:80374470-80374489 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG - chr6_2:80374469-80374488 Msa0931190:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG - chr6_2:80374470-80374489 Msa0931190:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG - chr6_2:80374512-80374531 Msa0931190:CDS 45.0%
!!! AAAAAAACAAATTTTATAAT+TGG + chr6_2:80373483-80373502 None:intergenic 5.0%
!!! AAAAAAACAAATTTTATAAT+TGG + chr6_2:80373483-80373502 None:intergenic 5.0%
ATCTCGGGCGAAATACGATC+AGG + chr6_2:80374036-80374055 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG + chr6_2:80374164-80374183 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG + chr6_2:80374176-80374195 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG - chr6_2:80374242-80374261 Msa0931190:intron 50.0%
!! ACGATAGTGGATGCATCGGA+TGG - chr6_2:80374353-80374372 Msa0931190:intron 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG + chr6_2:80374401-80374420 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG - chr6_2:80374471-80374490 Msa0931190:CDS 50.0%
ATCTCGGGCGAAATACGATC+AGG + chr6_2:80374036-80374055 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG + chr6_2:80374164-80374183 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG + chr6_2:80374176-80374195 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG - chr6_2:80374242-80374261 Msa0931190:intron 50.0%
!! ACGATAGTGGATGCATCGGA+TGG - chr6_2:80374353-80374372 Msa0931190:intron 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG + chr6_2:80374401-80374420 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG - chr6_2:80374471-80374490 Msa0931190:CDS 50.0%
!! GTATCGGGAAGTACCGCTTG+TGG + chr6_2:80373886-80373905 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG + chr6_2:80374012-80374031 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG + chr6_2:80374031-80374050 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG + chr6_2:80374032-80374051 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG + chr6_2:80374033-80374052 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG - chr6_2:80374243-80374262 Msa0931190:intron 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG - chr6_2:80374472-80374491 Msa0931190:CDS 55.0%
!! GTATCGGGAAGTACCGCTTG+TGG + chr6_2:80373886-80373905 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG + chr6_2:80374012-80374031 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG + chr6_2:80374031-80374050 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG + chr6_2:80374032-80374051 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG + chr6_2:80374033-80374052 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG - chr6_2:80374243-80374262 Msa0931190:intron 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG - chr6_2:80374472-80374491 Msa0931190:CDS 55.0%
ATCCGAGAGAAGCTACCGGG+CGG - chr6_2:80373809-80373828 Msa0931190:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG + chr6_2:80373814-80373833 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG - chr6_2:80374114-80374133 Msa0931190:intron 60.0%
ACGTAGGCGGGAATAGGGGA+AGG - chr6_2:80374222-80374241 Msa0931190:intron 60.0%
CGTAGGCGGGAATAGGGGAA+GGG - chr6_2:80374223-80374242 Msa0931190:intron 60.0%
GTAGGCGGGAATAGGGGAAG+GGG - chr6_2:80374224-80374243 Msa0931190:intron 60.0%
ATCCGAGAGAAGCTACCGGG+CGG - chr6_2:80373809-80373828 Msa0931190:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG + chr6_2:80373814-80373833 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG - chr6_2:80374114-80374133 Msa0931190:intron 60.0%
ACGTAGGCGGGAATAGGGGA+AGG - chr6_2:80374222-80374241 Msa0931190:intron 60.0%
CGTAGGCGGGAATAGGGGAA+GGG - chr6_2:80374223-80374242 Msa0931190:intron 60.0%
GTAGGCGGGAATAGGGGAAG+GGG - chr6_2:80374224-80374243 Msa0931190:intron 60.0%
CTTGTGGTAGGCCCCGTTCC+TGG - chr6_2:80374113-80374132 Msa0931190:intron 65.0%
CTTGTGGTAGGCCCCGTTCC+TGG - chr6_2:80374113-80374132 Msa0931190:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 80373028 80374634 80373028 ID=Msa0931190;Name=Msa0931190
chr6_2 mRNA 80373028 80374634 80373028 ID=Msa0931190-mRNA-1;Parent=Msa0931190;Name=Msa0931190-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|0.33|0.25|4|0|349
chr6_2 exon 80374454 80374634 80374454 ID=Msa0931190-mRNA-1:exon:14061;Parent=Msa0931190-mRNA-1
chr6_2 exon 80373795 80374015 80373795 ID=Msa0931190-mRNA-1:exon:14060;Parent=Msa0931190-mRNA-1
chr6_2 exon 80373593 80373782 80373593 ID=Msa0931190-mRNA-1:exon:14059;Parent=Msa0931190-mRNA-1
chr6_2 exon 80373028 80373485 80373028 ID=Msa0931190-mRNA-1:exon:14058;Parent=Msa0931190-mRNA-1
chr6_2 CDS 80374454 80374634 80374454 ID=Msa0931190-mRNA-1:cds;Parent=Msa0931190-mRNA-1
chr6_2 CDS 80373795 80374015 80373795 ID=Msa0931190-mRNA-1:cds;Parent=Msa0931190-mRNA-1
chr6_2 CDS 80373593 80373782 80373593 ID=Msa0931190-mRNA-1:cds;Parent=Msa0931190-mRNA-1
chr6_2 CDS 80373028 80373485 80373028 ID=Msa0931190-mRNA-1:cds;Parent=Msa0931190-mRNA-1
Gene Sequence

>Msa0931190

ATGGAAATCTACAAAGAAAGCATCCAATTGATAGAGACGAACAACCAAGACCGTATCCATACGATTTTGCATTTCTGTACAAATATAATATGTTTCCTTATTCTAAGTGGTTATTCTATTAGGGGTAATCAAGAACTCATTATTCTTAACTCTTGGGTTCAAGAATTTCTATATAACTTAAAAATTTTCAGGATGAATGATTGGACCATGCAAACTAGAAATGCTTTTTCTTGGATAAAGGAAGAGATTACCCGATCCATTTCCGTATTGCTCATGATCTATATAATAACTCGAGCACCCATTTCAAATGCATATCCCATTTTTGCTCAACAGGGTTATGAAAATCCGAGAGAAGCTACCGGGCGGATTGTATGTGCTAATTGCCATTTAGCTAATAAGCCTGTTCCACAAGCGGTACTTCCCGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAAGTTAAACAAGTTCTTGCTAATGGTAAAAAAGGGGCTTTGAATGTAGGTGCTGTTCTTATTTTACCAGAGGGTTTTGAATTGGCCCCTCCTGATCGTATTTCGCCCGAGATTAAAGAAAAAATAGATCCCGCTACTAAGAGAGATGTTCACTTCTTAAAATATCCTATATACGTAGGCGGGAATAGGGGAAGGGGTCAGATTTATCCCGACGGGAGCAAGAGTAATAATAATGTTTATAATGCTACAGCAACAGGTATAGTAAATAAAATTATACGAAAAGAAAAAGGTGGATACGAAATAACGATAGTGGATGCATCGGATGGACGTGAAGTGATTGATATTATACCGCCAGGACCAGAACTTCTTGTTTCAGAGGGTGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGTGGATTTGGTCAGGGGGATGCAGAAATAGTGCTTCAAGATCCGTTACGTGTACAAGGTCTGTTGTTCTTCTTGGCATCTATTATTTTGGCACAAATCTTTTTGGTTCTTAAAAAGAAACAATTTGAAAAGGTTCAATTGTCCGAAATGAATTTTTAG

Protein sequence

>Msa0931190

MEIYKESIQLIETNNQDRIHTILHFCTNIICFLILSGYSIRGNQELIILNSWVQEFLYNLKIFRMNDWTMQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIVCANCHLANKPVPQAVLPDTVFEAVVRIPYDMQVKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEIKEKIDPATKRDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATATGIVNKIIRKEKGGYEITIVDASDGREVIDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASIILAQIFLVLKKKQFEKVQLSEMNF*