AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1086660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1086660 MtrunA17_CPg0492851 93.538 325 2 3 65 370 1 325 0.0 602
Msa1086660 MtrunA17_Chr4g0015731 93.538 325 2 3 65 370 1 325 0.0 602
Msa1086660 MtrunA17_Chr4g0016821 93.538 325 2 3 65 370 1 325 0.0 602
Msa1086660 MtrunA17_Chr4g0016981 70.796 113 4 3 108 206 42 139 4.04e-43 147
Msa1086660 MtrunA17_Chr4g0016991 95.385 65 3 0 306 370 1 65 2.80e-36 126
Msa1086660 MtrunA17_Chr5g0403621 96.667 60 2 0 1 60 86 145 3.17e-35 127
Msa1086660 MtrunA17_CPg0492871 98.333 60 1 0 1 60 86 145 1.65e-34 127
Msa1086660 MtrunA17_Chr4g0015721 98.333 60 1 0 1 60 86 145 1.65e-34 127
Msa1086660 MtrunA17_Chr4g0016811 98.333 60 1 0 1 60 95 154 1.78e-34 127
Msa1086660 MtrunA17_Chr3g0141111 94.737 57 3 0 1 57 15 71 2.86e-33 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1086660 ATCG00540.1 84.688 320 30 3 70 370 1 320 0.0 538
Msa1086660 ATCG00530.1 67.241 58 19 0 3 60 88 145 2.24e-18 83.6

Find 76 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTGGCATCTATTATTT+TGG 0.108321 7_2:-87495997 Msa1086660:CDS
TTCTAAGTGGTTATTCTATT+AGG 0.170612 7_2:-87497412 Msa1086660:CDS
ACAAGGTCTGTTGTTCTTCT+TGG 0.210830 7_2:-87496012 Msa1086660:CDS
TCTAAGTGGTTATTCTATTA+GGG 0.213858 7_2:-87497411 Msa1086660:CDS
CTTGTGGTAGGCCCCGTTCC+TGG 0.214230 7_2:-87496427 Msa1086660:CDS
ACATTAGGATTACTCGTTAA+TGG 0.226644 7_2:+87496089 None:intergenic
TAGAATAACCACTTAGAATA+AGG 0.296044 7_2:+87497417 None:intergenic
CTACAGGCTTATTAGCTAAA+TGG 0.299374 7_2:+87496692 None:intergenic
CTATATTTCTTCCCAGGAAC+GGG 0.314257 7_2:+87496415 None:intergenic
AATCCTAATGTGGGTGGATT+TGG 0.318985 7_2:-87496077 Msa1086660:CDS
AACTCATTATTCTTAACTCT+TGG 0.323937 7_2:-87497379 Msa1086660:CDS
AAAATTATACGAAAAGAAAA+AGG 0.339453 7_2:-87496224 Msa1086660:CDS
CTATTCCCGCCTACGTATAT+AGG 0.341092 7_2:+87496325 None:intergenic
GTTAAACAAGTTCTTGCTAA+TGG 0.346567 7_2:-87496595 Msa1086660:CDS
GGTTGTTCGTCTCTATCAAT+TGG 0.367131 7_2:+87497489 None:intergenic
CCCTCTGAAACAAGAAGTTC+TGG 0.373836 7_2:+87496134 None:intergenic
TAATGTGGGTGGATTTGGTC+AGG 0.386047 7_2:-87496072 Msa1086660:CDS
TGACCAAATCCACCCACATT+AGG 0.412065 7_2:+87496074 None:intergenic
TGTTTAACTTGCATATCATA+AGG 0.412925 7_2:+87496610 None:intergenic
ACTCATTATTCTTAACTCTT+GGG 0.414290 7_2:-87497378 Msa1086660:CDS
TCTCTCTTAGTAGCGGGATC+TGG 0.425976 7_2:+87496367 None:intergenic
AATGGGATATGCATTTGAAA+TGG 0.432612 7_2:+87496777 None:intergenic
GTTTATAATGCTACAGCAAC+AGG 0.436701 7_2:-87496257 Msa1086660:CDS
GATCATGAGCAATACGGAAA+TGG 0.442149 7_2:+87496819 None:intergenic
AAATCGTATGGATACGGTCT+TGG 0.446811 7_2:+87497468 None:intergenic
TTGTGGTAGGCCCCGTTCCT+GGG 0.450790 7_2:-87496426 Msa1086660:CDS
TTATTACTCTTGCTCCCGTC+GGG 0.465288 7_2:+87496284 None:intergenic
ATATGTTTCCTTATTCTAAG+TGG 0.468100 7_2:-87497425 Msa1086660:CDS
TACAGAAATGCAAAATCGTA+TGG 0.481344 7_2:+87497456 None:intergenic
ACTGCTTCAAATACAGTATC+GGG 0.488265 7_2:+87496643 None:intergenic
AAAAGCATTTCTAGTTTGCA+TGG 0.489913 7_2:+87496870 None:intergenic
TGGATACGAAATAACGATAG+TGG 0.491690 7_2:-87496201 Msa1086660:CDS
AACTGCTTCAAATACAGTAT+CGG 0.494328 7_2:+87496642 None:intergenic
ATTTCACTATATTTCTTCCC+AGG 0.497196 7_2:+87496409 None:intergenic
ATGGGATATGCATTTGAAAT+GGG 0.502392 7_2:+87496778 None:intergenic
GAGCAATACGGAAATGGATC+GGG 0.505456 7_2:+87496825 None:intergenic
CAAGATCCGTTACGTGTACA+AGG 0.506414 7_2:-87496029 Msa1086660:CDS
TATATAGATCATGAGCAATA+CGG 0.512581 7_2:+87496813 None:intergenic
ATCCGCCCGGTAGCTTCTCT+CGG 0.516777 7_2:+87496730 None:intergenic
ATGTGGGTGGATTTGGTCAG+GGG 0.523100 7_2:-87496070 Msa1086660:CDS
ATTATTACTCTTGCTCCCGT+CGG 0.527873 7_2:+87496283 None:intergenic
CCAGAACTTCTTGTTTCAGA+GGG 0.530598 7_2:-87496134 Msa1086660:CDS
ACTATATTTCTTCCCAGGAA+CGG 0.533921 7_2:+87496414 None:intergenic
AATGTGGGTGGATTTGGTCA+GGG 0.534197 7_2:-87496071 Msa1086660:CDS
CTAAGTGGTTATTCTATTAG+GGG 0.545375 7_2:-87497410 Msa1086660:CDS
GAAACAAGAAGTTCTGGTCC+TGG 0.545439 7_2:+87496140 None:intergenic
GCGGGATCTGGAGAAAGAAT+AGG 0.547213 7_2:+87496379 None:intergenic
AATGCAAAATCGTATGGATA+CGG 0.548969 7_2:+87497462 None:intergenic
GTGAACATCTCTCTTAGTAG+CGG 0.549431 7_2:+87496360 None:intergenic
ACCAGAACTTCTTGTTTCAG+AGG 0.553828 7_2:-87496135 Msa1086660:CDS
AAAATCCGAGAGAAGCTACC+GGG 0.554646 7_2:-87496735 Msa1086660:CDS
TGAGCAATACGGAAATGGAT+CGG 0.555873 7_2:+87496824 None:intergenic
GTGATTGATATTATACCGCC+AGG 0.566218 7_2:-87496158 Msa1086660:CDS
TGAACATCTCTCTTAGTAGC+GGG 0.566429 7_2:+87496361 None:intergenic
ATTAACGAGTAATCCTAATG+TGG 0.573726 7_2:-87496087 Msa1086660:CDS
GGGGCCAATTCAAAACCCTC+TGG 0.574508 7_2:+87496532 None:intergenic
AGGGTCAGATTTATCCCGAC+GGG 0.581704 7_2:-87496298 Msa1086660:CDS
ACGATAGTGGATGCATCGGA+TGG 0.592008 7_2:-87496188 Msa1086660:CDS
ATCTGGAGAAAGAATAGGAA+AGG 0.599901 7_2:+87496384 None:intergenic
AACAGACCTTGTACACGTAA+CGG 0.600684 7_2:+87496023 None:intergenic
GAAAATCCGAGAGAAGCTAC+CGG 0.606144 7_2:-87496736 Msa1086660:CDS
TGTGGGTGGATTTGGTCAGG+GGG 0.611690 7_2:-87496069 Msa1086660:CDS
ACGAGTAATCCTAATGTGGG+TGG 0.626177 7_2:-87496083 Msa1086660:CDS
TCGGGCGAAATACGATCAGG+AGG 0.629985 7_2:+87496511 None:intergenic
ATTAGCACATACAATCCGCC+CGG 0.633238 7_2:+87496717 None:intergenic
AATAACGATAGTGGATGCAT+CGG 0.634066 7_2:-87496192 Msa1086660:CDS
TATATTTCTTCCCAGGAACG+GGG 0.637585 7_2:+87496416 None:intergenic
TTAACGAGTAATCCTAATGT+GGG 0.652400 7_2:-87496086 Msa1086660:CDS
AGATATTGAGGTTCCACAAG+CGG 0.653295 7_2:-87496671 Msa1086660:intron
CGGGCGAAATACGATCAGGA+GGG 0.656521 7_2:+87496512 None:intergenic
GGGCGAAATACGATCAGGAG+GGG 0.658846 7_2:+87496513 None:intergenic
AAGGGTCAGATTTATCCCGA+CGG 0.672516 7_2:-87496299 Msa1086660:CDS
CGTAGGCGGGAATAGGGGAA+GGG 0.682884 7_2:-87496317 Msa1086660:intron
GTATCGGGAAGTACCGCTTG+TGG 0.687149 7_2:+87496658 None:intergenic
ACAAGAAGTTCTGGTCCTGG+CGG 0.692543 7_2:+87496143 None:intergenic
ATCCGAGAGAAGCTACCGGG+CGG 0.767274 7_2:-87496732 Msa1086660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATAAATCAGTTAATAAA+AGG + chr7_2:87496138-87496157 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG - chr7_2:87496139-87496158 Msa1086660:CDS 15.0%
!!! TAGATACAATTTTAAAATAC+TGG - chr7_2:87496275-87496294 Msa1086660:CDS 15.0%
!! AAAATTTCTACAATAAGATT+AGG + chr7_2:87496534-87496553 None:intergenic 15.0%
!!! ACAAGAATATTTTTTTTTGT+GGG + chr7_2:87496999-87497018 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG - chr7_2:87497217-87497236 Msa1086660:intron 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG - chr7_2:87497486-87497505 Msa1086660:CDS 15.0%
!! TACATAAATCAGTTAATAAA+AGG + chr7_2:87496138-87496157 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG - chr7_2:87496139-87496158 Msa1086660:CDS 15.0%
!!! TAGATACAATTTTAAAATAC+TGG - chr7_2:87496275-87496294 Msa1086660:CDS 15.0%
!! AAAATTTCTACAATAAGATT+AGG + chr7_2:87496534-87496553 None:intergenic 15.0%
!!! ACAAGAATATTTTTTTTTGT+GGG + chr7_2:87496999-87497018 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG - chr7_2:87497217-87497236 Msa1086660:intron 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG - chr7_2:87497486-87497505 Msa1086660:CDS 15.0%
!!! AAAATTGTATCTAAAATGAC+TGG + chr7_2:87496268-87496287 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG + chr7_2:87496376-87496395 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG + chr7_2:87496466-87496485 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG - chr7_2:87496535-87496554 Msa1086660:CDS 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG + chr7_2:87496952-87496971 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG + chr7_2:87497000-87497019 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG - chr7_2:87496998-87497017 Msa1086660:intron 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG - chr7_2:87497002-87497021 Msa1086660:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG - chr7_2:87497107-87497126 Msa1086660:intron 20.0%
!!! AAAATTGTATCTAAAATGAC+TGG + chr7_2:87496268-87496287 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG + chr7_2:87496376-87496395 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG + chr7_2:87496466-87496485 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG - chr7_2:87496535-87496554 Msa1086660:CDS 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG + chr7_2:87496952-87496971 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG + chr7_2:87497000-87497019 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG - chr7_2:87496998-87497017 Msa1086660:intron 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG - chr7_2:87497002-87497021 Msa1086660:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG - chr7_2:87497107-87497126 Msa1086660:intron 20.0%
! ATATGTTTCCTTATTCTAAG+TGG - chr7_2:87496016-87496035 Msa1086660:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG + chr7_2:87496027-87496046 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG - chr7_2:87496029-87496048 Msa1086660:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG - chr7_2:87496030-87496049 Msa1086660:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG - chr7_2:87496062-87496081 Msa1086660:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG - chr7_2:87496063-87496082 Msa1086660:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG - chr7_2:87496226-87496245 Msa1086660:CDS 25.0%
! GAGATACACGATTTAAATAA+CGG + chr7_2:87496306-87496325 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG - chr7_2:87496484-87496503 Msa1086660:intron 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG - chr7_2:87496489-87496508 Msa1086660:intron 25.0%
!!! AAATAGCAGAATAATGGATA+GGG - chr7_2:87496490-87496509 Msa1086660:intron 25.0%
! TTTCTACAATAAGATTAGGT+AGG + chr7_2:87496530-87496549 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG - chr7_2:87496547-87496566 Msa1086660:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG - chr7_2:87496577-87496596 Msa1086660:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG - chr7_2:87496584-87496603 Msa1086660:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG + chr7_2:87496631-87496650 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG + chr7_2:87496834-87496853 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG - chr7_2:87496856-87496875 Msa1086660:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG + chr7_2:87496951-87496970 None:intergenic 25.0%
! ATTATACGAAAAGAAAAAGG+TGG - chr7_2:87497220-87497239 Msa1086660:intron 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG - chr7_2:87497459-87497478 Msa1086660:CDS 25.0%
! ATATGTTTCCTTATTCTAAG+TGG - chr7_2:87496016-87496035 Msa1086660:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG + chr7_2:87496027-87496046 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG - chr7_2:87496029-87496048 Msa1086660:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG - chr7_2:87496030-87496049 Msa1086660:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG - chr7_2:87496062-87496081 Msa1086660:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG - chr7_2:87496063-87496082 Msa1086660:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG - chr7_2:87496226-87496245 Msa1086660:CDS 25.0%
! GAGATACACGATTTAAATAA+CGG + chr7_2:87496306-87496325 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG - chr7_2:87496484-87496503 Msa1086660:intron 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG - chr7_2:87496489-87496508 Msa1086660:intron 25.0%
!!! AAATAGCAGAATAATGGATA+GGG - chr7_2:87496490-87496509 Msa1086660:intron 25.0%
! TTTCTACAATAAGATTAGGT+AGG + chr7_2:87496530-87496549 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG - chr7_2:87496547-87496566 Msa1086660:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG - chr7_2:87496577-87496596 Msa1086660:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG - chr7_2:87496584-87496603 Msa1086660:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG + chr7_2:87496631-87496650 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG + chr7_2:87496834-87496853 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG - chr7_2:87496856-87496875 Msa1086660:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG + chr7_2:87496951-87496970 None:intergenic 25.0%
! ATTATACGAAAAGAAAAAGG+TGG - chr7_2:87497220-87497239 Msa1086660:intron 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG - chr7_2:87497459-87497478 Msa1086660:CDS 25.0%
AATGCAAAATCGTATGGATA+CGG + chr7_2:87495982-87496001 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG + chr7_2:87495988-87496007 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG - chr7_2:87496031-87496050 Msa1086660:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG + chr7_2:87496260-87496279 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG + chr7_2:87496328-87496347 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG - chr7_2:87496453-87496472 Msa1086660:CDS 30.0%
AATAAGATTAGGTAGGTTAC+TGG + chr7_2:87496523-87496542 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG + chr7_2:87496574-87496593 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG + chr7_2:87496666-87496685 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG + chr7_2:87496667-87496686 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG - chr7_2:87496758-87496777 Msa1086660:CDS 30.0%
AACTGCTTCAAATACAGTAT+CGG + chr7_2:87496802-87496821 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG - chr7_2:87496846-87496865 Msa1086660:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG - chr7_2:87496855-87496874 Msa1086660:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG - chr7_2:87496857-87496876 Msa1086660:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG - chr7_2:87496948-87496967 Msa1086660:intron 30.0%
ATTTCACTATATTTCTTCCC+AGG + chr7_2:87497035-87497054 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG - chr7_2:87497110-87497129 Msa1086660:intron 30.0%
ACATTAGGATTACTCGTTAA+TGG + chr7_2:87497355-87497374 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG - chr7_2:87497354-87497373 Msa1086660:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG - chr7_2:87497355-87497374 Msa1086660:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG - chr7_2:87497444-87497463 Msa1086660:CDS 30.0%
AATGCAAAATCGTATGGATA+CGG + chr7_2:87495982-87496001 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG + chr7_2:87495988-87496007 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG - chr7_2:87496031-87496050 Msa1086660:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG + chr7_2:87496260-87496279 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG + chr7_2:87496328-87496347 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG - chr7_2:87496453-87496472 Msa1086660:CDS 30.0%
AATAAGATTAGGTAGGTTAC+TGG + chr7_2:87496523-87496542 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG + chr7_2:87496574-87496593 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG + chr7_2:87496666-87496685 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG + chr7_2:87496667-87496686 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG - chr7_2:87496758-87496777 Msa1086660:CDS 30.0%
AACTGCTTCAAATACAGTAT+CGG + chr7_2:87496802-87496821 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG - chr7_2:87496846-87496865 Msa1086660:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG - chr7_2:87496855-87496874 Msa1086660:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG - chr7_2:87496857-87496876 Msa1086660:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG - chr7_2:87496948-87496967 Msa1086660:intron 30.0%
ATTTCACTATATTTCTTCCC+AGG + chr7_2:87497035-87497054 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG - chr7_2:87497110-87497129 Msa1086660:intron 30.0%
ACATTAGGATTACTCGTTAA+TGG + chr7_2:87497355-87497374 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG - chr7_2:87497354-87497373 Msa1086660:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG - chr7_2:87497355-87497374 Msa1086660:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG - chr7_2:87497444-87497463 Msa1086660:CDS 30.0%
ATAGGATTCCATTCAACTCA+TGG - chr7_2:87496157-87496176 Msa1086660:CDS 35.0%
ATTCCATTCAACTCATGGTT+GGG - chr7_2:87496162-87496181 Msa1086660:CDS 35.0%
ATGGTTGGGAACTAATGATT+GGG - chr7_2:87496176-87496195 Msa1086660:CDS 35.0%
! GGGTCTGTCTATAAAGATTT+TGG - chr7_2:87496196-87496215 Msa1086660:CDS 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG - chr7_2:87496677-87496696 Msa1086660:intron 35.0%
!! TATCCCATTTTTGCTCAACA+GGG - chr7_2:87496678-87496697 Msa1086660:intron 35.0%
TAACCCTGTTGAGCAAAAAT+GGG + chr7_2:87496684-87496703 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG + chr7_2:87496685-87496704 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG + chr7_2:87496752-87496771 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG + chr7_2:87496801-87496820 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG - chr7_2:87496870-87496889 Msa1086660:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG - chr7_2:87496893-87496912 Msa1086660:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG - chr7_2:87496894-87496913 Msa1086660:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG - chr7_2:87496905-87496924 Msa1086660:intron 35.0%
ACTATATTTCTTCCCAGGAA+CGG + chr7_2:87497030-87497049 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG + chr7_2:87497060-87497079 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG - chr7_2:87497111-87497130 Msa1086660:intron 35.0%
GTTTATAATGCTACAGCAAC+AGG - chr7_2:87497184-87497203 Msa1086660:intron 35.0%
TGGATACGAAATAACGATAG+TGG - chr7_2:87497240-87497259 Msa1086660:intron 35.0%
!! AATAACGATAGTGGATGCAT+CGG - chr7_2:87497249-87497268 Msa1086660:intron 35.0%
ATAGGATTCCATTCAACTCA+TGG - chr7_2:87496157-87496176 Msa1086660:CDS 35.0%
ATTCCATTCAACTCATGGTT+GGG - chr7_2:87496162-87496181 Msa1086660:CDS 35.0%
ATGGTTGGGAACTAATGATT+GGG - chr7_2:87496176-87496195 Msa1086660:CDS 35.0%
! GGGTCTGTCTATAAAGATTT+TGG - chr7_2:87496196-87496215 Msa1086660:CDS 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG - chr7_2:87496677-87496696 Msa1086660:intron 35.0%
!! TATCCCATTTTTGCTCAACA+GGG - chr7_2:87496678-87496697 Msa1086660:intron 35.0%
TAACCCTGTTGAGCAAAAAT+GGG + chr7_2:87496684-87496703 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG + chr7_2:87496685-87496704 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG + chr7_2:87496752-87496771 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG + chr7_2:87496801-87496820 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG - chr7_2:87496870-87496889 Msa1086660:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG - chr7_2:87496893-87496912 Msa1086660:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG - chr7_2:87496894-87496913 Msa1086660:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG - chr7_2:87496905-87496924 Msa1086660:intron 35.0%
ACTATATTTCTTCCCAGGAA+CGG + chr7_2:87497030-87497049 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG + chr7_2:87497060-87497079 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG - chr7_2:87497111-87497130 Msa1086660:intron 35.0%
GTTTATAATGCTACAGCAAC+AGG - chr7_2:87497184-87497203 Msa1086660:intron 35.0%
TGGATACGAAATAACGATAG+TGG - chr7_2:87497240-87497259 Msa1086660:intron 35.0%
!! AATAACGATAGTGGATGCAT+CGG - chr7_2:87497249-87497268 Msa1086660:intron 35.0%
GGTTGTTCGTCTCTATCAAT+TGG + chr7_2:87495955-87495974 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG + chr7_2:87495976-87495995 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG - chr7_2:87496161-87496180 Msa1086660:CDS 40.0%
CATGGTTGGGAACTAATGAT+TGG - chr7_2:87496175-87496194 Msa1086660:CDS 40.0%
TGAGCAATACGGAAATGGAT+CGG + chr7_2:87496620-87496639 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG + chr7_2:87496625-87496644 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG + chr7_2:87496768-87496787 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG - chr7_2:87496770-87496789 Msa1086660:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG + chr7_2:87497028-87497047 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG + chr7_2:87497029-87497048 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG + chr7_2:87497083-87497102 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG + chr7_2:87497084-87497103 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG - chr7_2:87497118-87497137 Msa1086660:intron 40.0%
ATTATTACTCTTGCTCCCGT+CGG + chr7_2:87497161-87497180 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG - chr7_2:87497283-87497302 Msa1086660:intron 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG - chr7_2:87497306-87497325 Msa1086660:intron 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG - chr7_2:87497307-87497326 Msa1086660:intron 40.0%
! AATCCTAATGTGGGTGGATT+TGG - chr7_2:87497364-87497383 Msa1086660:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG + chr7_2:87497421-87497440 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG - chr7_2:87497429-87497448 Msa1086660:CDS 40.0%
GGTTGTTCGTCTCTATCAAT+TGG + chr7_2:87495955-87495974 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG + chr7_2:87495976-87495995 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG - chr7_2:87496161-87496180 Msa1086660:CDS 40.0%
CATGGTTGGGAACTAATGAT+TGG - chr7_2:87496175-87496194 Msa1086660:CDS 40.0%
TGAGCAATACGGAAATGGAT+CGG + chr7_2:87496620-87496639 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG + chr7_2:87496625-87496644 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG + chr7_2:87496768-87496787 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG - chr7_2:87496770-87496789 Msa1086660:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG + chr7_2:87497028-87497047 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG + chr7_2:87497029-87497048 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG + chr7_2:87497083-87497102 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG + chr7_2:87497084-87497103 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG - chr7_2:87497118-87497137 Msa1086660:intron 40.0%
ATTATTACTCTTGCTCCCGT+CGG + chr7_2:87497161-87497180 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG - chr7_2:87497283-87497302 Msa1086660:intron 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG - chr7_2:87497306-87497325 Msa1086660:intron 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG - chr7_2:87497307-87497326 Msa1086660:intron 40.0%
! AATCCTAATGTGGGTGGATT+TGG - chr7_2:87497364-87497383 Msa1086660:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG + chr7_2:87497421-87497440 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG - chr7_2:87497429-87497448 Msa1086660:CDS 40.0%
! GTTCCCAACCATGAGTTGAA+TGG + chr7_2:87496168-87496187 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG + chr7_2:87496619-87496638 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG - chr7_2:87496705-87496724 Msa1086660:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG - chr7_2:87496706-87496725 Msa1086660:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG + chr7_2:87496727-87496746 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG + chr7_2:87497119-87497138 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG - chr7_2:87497117-87497136 Msa1086660:intron 45.0%
ATATACGTAGGCGGGAATAG+GGG - chr7_2:87497119-87497138 Msa1086660:intron 45.0%
AAGGGTCAGATTTATCCCGA+CGG - chr7_2:87497142-87497161 Msa1086660:intron 45.0%
TTATTACTCTTGCTCCCGTC+GGG + chr7_2:87497160-87497179 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG + chr7_2:87497304-87497323 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG + chr7_2:87497310-87497329 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG - chr7_2:87497358-87497377 Msa1086660:CDS 45.0%
TGACCAAATCCACCCACATT+AGG + chr7_2:87497370-87497389 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG - chr7_2:87497369-87497388 Msa1086660:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG - chr7_2:87497370-87497389 Msa1086660:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG - chr7_2:87497412-87497431 Msa1086660:CDS 45.0%
! GTTCCCAACCATGAGTTGAA+TGG + chr7_2:87496168-87496187 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG + chr7_2:87496619-87496638 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG - chr7_2:87496705-87496724 Msa1086660:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG - chr7_2:87496706-87496725 Msa1086660:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG + chr7_2:87496727-87496746 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG + chr7_2:87497119-87497138 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG - chr7_2:87497117-87497136 Msa1086660:intron 45.0%
ATATACGTAGGCGGGAATAG+GGG - chr7_2:87497119-87497138 Msa1086660:intron 45.0%
AAGGGTCAGATTTATCCCGA+CGG - chr7_2:87497142-87497161 Msa1086660:intron 45.0%
TTATTACTCTTGCTCCCGTC+GGG + chr7_2:87497160-87497179 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG + chr7_2:87497304-87497323 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG + chr7_2:87497310-87497329 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG - chr7_2:87497358-87497377 Msa1086660:CDS 45.0%
TGACCAAATCCACCCACATT+AGG + chr7_2:87497370-87497389 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG - chr7_2:87497369-87497388 Msa1086660:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG - chr7_2:87497370-87497389 Msa1086660:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG - chr7_2:87497412-87497431 Msa1086660:CDS 45.0%
!!! AAAAAAACAAATTTTATAAT+TGG + chr7_2:87496384-87496403 None:intergenic 5.0%
!!! AAAAAAACAAATTTTATAAT+TGG + chr7_2:87496384-87496403 None:intergenic 5.0%
ATCTCGGGCGAAATACGATC+AGG + chr7_2:87496936-87496955 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG + chr7_2:87497065-87497084 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG + chr7_2:87497077-87497096 None:intergenic 50.0%
AGGGTCAGATTTATCCCGAC+GGG - chr7_2:87497143-87497162 Msa1086660:intron 50.0%
!! ACGATAGTGGATGCATCGGA+TGG - chr7_2:87497253-87497272 Msa1086660:intron 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG + chr7_2:87497301-87497320 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG - chr7_2:87497371-87497390 Msa1086660:CDS 50.0%
ATCTCGGGCGAAATACGATC+AGG + chr7_2:87496936-87496955 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG + chr7_2:87497065-87497084 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG + chr7_2:87497077-87497096 None:intergenic 50.0%
AGGGTCAGATTTATCCCGAC+GGG - chr7_2:87497143-87497162 Msa1086660:intron 50.0%
!! ACGATAGTGGATGCATCGGA+TGG - chr7_2:87497253-87497272 Msa1086660:intron 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG + chr7_2:87497301-87497320 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG - chr7_2:87497371-87497390 Msa1086660:CDS 50.0%
!! GTATCGGGAAGTACCGCTTG+TGG + chr7_2:87496786-87496805 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG + chr7_2:87496912-87496931 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG + chr7_2:87496931-87496950 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG + chr7_2:87496932-87496951 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG + chr7_2:87496933-87496952 None:intergenic 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG - chr7_2:87497372-87497391 Msa1086660:CDS 55.0%
!! GTATCGGGAAGTACCGCTTG+TGG + chr7_2:87496786-87496805 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG + chr7_2:87496912-87496931 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG + chr7_2:87496931-87496950 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG + chr7_2:87496932-87496951 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG + chr7_2:87496933-87496952 None:intergenic 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG - chr7_2:87497372-87497391 Msa1086660:CDS 55.0%
ATCCGAGAGAAGCTACCGGG+CGG - chr7_2:87496709-87496728 Msa1086660:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG + chr7_2:87496714-87496733 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG - chr7_2:87497015-87497034 Msa1086660:intron 60.0%
ACGTAGGCGGGAATAGGGGA+AGG - chr7_2:87497123-87497142 Msa1086660:intron 60.0%
CGTAGGCGGGAATAGGGGAA+GGG - chr7_2:87497124-87497143 Msa1086660:intron 60.0%
ATCCGAGAGAAGCTACCGGG+CGG - chr7_2:87496709-87496728 Msa1086660:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG + chr7_2:87496714-87496733 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG - chr7_2:87497015-87497034 Msa1086660:intron 60.0%
ACGTAGGCGGGAATAGGGGA+AGG - chr7_2:87497123-87497142 Msa1086660:intron 60.0%
CGTAGGCGGGAATAGGGGAA+GGG - chr7_2:87497124-87497143 Msa1086660:intron 60.0%
CTTGTGGTAGGCCCCGTTCC+TGG - chr7_2:87497014-87497033 Msa1086660:intron 65.0%
CTTGTGGTAGGCCCCGTTCC+TGG - chr7_2:87497014-87497033 Msa1086660:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 87495929 87497534 87495929 ID=Msa1086660;Name=Msa1086660
chr7_2 mRNA 87495929 87497534 87495929 ID=Msa1086660-mRNA-1;Parent=Msa1086660;Name=Msa1086660-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|0|0|5|0|370
chr7_2 exon 87497354 87497534 87497354 ID=Msa1086660-mRNA-1:exon:23881;Parent=Msa1086660-mRNA-1
chr7_2 exon 87496696 87496916 87496696 ID=Msa1086660-mRNA-1:exon:23880;Parent=Msa1086660-mRNA-1
chr7_2 exon 87496524 87496683 87496524 ID=Msa1086660-mRNA-1:exon:23879;Parent=Msa1086660-mRNA-1
chr7_2 exon 87496339 87496493 87496339 ID=Msa1086660-mRNA-1:exon:23878;Parent=Msa1086660-mRNA-1
chr7_2 exon 87495929 87496324 87495929 ID=Msa1086660-mRNA-1:exon:23877;Parent=Msa1086660-mRNA-1
chr7_2 CDS 87497354 87497534 87497354 ID=Msa1086660-mRNA-1:cds;Parent=Msa1086660-mRNA-1
chr7_2 CDS 87496696 87496916 87496696 ID=Msa1086660-mRNA-1:cds;Parent=Msa1086660-mRNA-1
chr7_2 CDS 87496524 87496683 87496524 ID=Msa1086660-mRNA-1:cds;Parent=Msa1086660-mRNA-1
chr7_2 CDS 87496339 87496493 87496339 ID=Msa1086660-mRNA-1:cds;Parent=Msa1086660-mRNA-1
chr7_2 CDS 87495929 87496324 87495929 ID=Msa1086660-mRNA-1:cds;Parent=Msa1086660-mRNA-1
Gene Sequence

>Msa1086660

ATGGAAATCTACAAAGAAAGCATCCAATTGATAGAGACGAACAACCAAGACCGTATCCATACGATTTTGCATTTCTGTACAAATATAATATGTTTCCTTATTCTAAGTGGTTATTCTATTAGGGGTAATCAAGAACTCATTATTCTTAACTCTTGGGTTCAAGAATTTCTATATAACTTAAAAATTTTCAGGATGAATGATTGGACCATGCAAACTAGAAATGCTTTTTCTTGGATAAAGGAAGAGATTACCCGATCCATTTCCGTATTGCTCATGATCTATATAATAACTCGAGCACCCATTTCAAATGCATATCCCATTTTTGCTCAACAGGGTTATGAAAATCCGAGAGAAGCTACCGGGCGGATTGTATGTGCTAATTGCCATTTAGCTAATAAGCCTGTTCCACAAGCGGTACTTCCCGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAAGTTAAACAAGTTCTTGCTAATGGTAAAAAAGGGGCTTTGAATGTAGGTGCTGTTCTTATTTTACCAGAGGGTTTTGAATTGGCCCCTCCTGATCGTAATTTGTCTTTTCAAAGCTATCGTCCCACAAAAAAAAATATTCTTGTGGTAGGCCCCGTTCCTGGGAAGAAATATAGTGAAATTACCTTTCCTATTCTTTCTCCAGATCCCGCTACTAAGAGAGATGTTCACTTCTTAAAATATCCTATATACGGGAAGGGTCAGATTTATCCCGACGGGAGCAAGAGTAATAATAATGTTTATAATGCTACAGCAACAGGTATAGTAAATAAAATTATACGAAAAGAAAAAGGTGGATACGAAATAACGATAGTGGATGCATCGGATGGACGTGAAGTGATTGATATTATACCGCCAGGACCAGAACTTCTTGTTTCAGAGGGTGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGTGGATTTGGTCAGGGGGATGCAGAAATAGTGCTTCAAGATCCGTTACGTGTACAAGGTCTGTTGTTCTTCTTGGCATCTATTATTTTGGCACAAATCTTTTTGGTTCTTAAAAAGAAACAATTTGAAAAGGTTCAATTGTCCGAAATGAATTTTTAG

Protein sequence

>Msa1086660

MEIYKESIQLIETNNQDRIHTILHFCTNIICFLILSGYSIRGNQELIILNSWVQEFLYNLKIFRMNDWTMQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIVCANCHLANKPVPQAVLPDTVFEAVVRIPYDMQVKQVLANGKKGALNVGAVLILPEGFELAPPDRNLSFQSYRPTKKNILVVGPVPGKKYSEITFPILSPDPATKRDVHFLKYPIYGKGQIYPDGSKSNNNVYNATATGIVNKIIRKEKGGYEITIVDASDGREVIDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASIILAQIFLVLKKKQFEKVQLSEMNF*