AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1354880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1354880 MtrunA17_CPg0492851 99.692 325 1 0 65 389 1 325 0.0 659
Msa1354880 MtrunA17_Chr4g0015731 99.692 325 1 0 65 389 1 325 0.0 659
Msa1354880 MtrunA17_Chr4g0016821 99.692 325 1 0 65 389 1 325 0.0 659
Msa1354880 MtrunA17_Chr4g0016981 83.186 113 4 1 108 220 42 139 2.08e-58 187
Msa1354880 MtrunA17_Chr4g0016991 95.385 65 3 0 325 389 1 65 4.08e-36 126
Msa1354880 MtrunA17_Chr5g0403621 96.667 60 2 0 1 60 86 145 4.59e-35 127
Msa1354880 MtrunA17_Chr4g0016811 98.333 60 1 0 1 60 95 154 2.12e-34 127
Msa1354880 MtrunA17_CPg0492871 98.333 60 1 0 1 60 86 145 2.37e-34 127
Msa1354880 MtrunA17_Chr4g0015721 98.333 60 1 0 1 60 86 145 2.37e-34 127
Msa1354880 MtrunA17_Chr3g0141111 94.737 57 3 0 1 57 15 71 3.31e-33 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1354880 ATCG00540.1 90.625 320 30 0 70 389 1 320 0.0 595
Msa1354880 ATCG00530.1 67.241 58 19 0 3 60 88 145 2.46e-18 83.6

Find 87 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTGGCATCTATTATTT+TGG 0.108321 tig0014543:-573113 Msa1354880:CDS
TTCTAAGTGGTTATTCTATT+AGG 0.170612 tig0014543:-574530 Msa1354880:CDS
ACAAGGTCTGTTGTTCTTCT+TGG 0.210830 tig0014543:-573128 Msa1354880:CDS
TCTAAGTGGTTATTCTATTA+GGG 0.213858 tig0014543:-574529 Msa1354880:CDS
CTTGTGGTAGGCCCCGTTCC+TGG 0.214230 tig0014543:-573544 Msa1354880:CDS
ACATTAGGATTACTCGTTAA+TGG 0.226644 tig0014543:+573205 None:intergenic
TAGAATAACCACTTAGAATA+AGG 0.296044 tig0014543:+574535 None:intergenic
CTACAGGCTTATTAGCTAAA+TGG 0.299374 tig0014543:+573809 None:intergenic
CTATATACGTAGGCGGGAAT+AGG 0.308836 tig0014543:-573441 Msa1354880:CDS
CTATATTTCTTCCCAGGAAC+GGG 0.314257 tig0014543:+573532 None:intergenic
AATCCTAATGTGGGTGGATT+TGG 0.318985 tig0014543:-573193 Msa1354880:CDS
AACTCATTATTCTTAACTCT+TGG 0.323937 tig0014543:-574497 Msa1354880:CDS
AAAATTATACGAAAAGAAAA+AGG 0.339453 tig0014543:-573340 Msa1354880:CDS
TATATACGTAGGCGGGAATA+GGG 0.340058 tig0014543:-573440 Msa1354880:CDS
CTATTCCCGCCTACGTATAT+AGG 0.341092 tig0014543:+573442 None:intergenic
GTTAAACAAGTTCTTGCTAA+TGG 0.346567 tig0014543:-573712 Msa1354880:CDS
GGTTGTTCGTCTCTATCAAT+TGG 0.367131 tig0014543:+574607 None:intergenic
CCCTCTGAAACAAGAAGTTC+TGG 0.373836 tig0014543:+573250 None:intergenic
TAATGTGGGTGGATTTGGTC+AGG 0.386047 tig0014543:-573188 Msa1354880:CDS
TGACCAAATCCACCCACATT+AGG 0.412065 tig0014543:+573190 None:intergenic
TGTTTAACTTGCATATCATA+AGG 0.412925 tig0014543:+573727 None:intergenic
ACTCATTATTCTTAACTCTT+GGG 0.414290 tig0014543:-574496 Msa1354880:CDS
TCTCTCTTAGTAGCGGGATC+TGG 0.425976 tig0014543:+573484 None:intergenic
AATGGGATATGCATTTGAAA+TGG 0.432612 tig0014543:+573894 None:intergenic
GTTTATAATGCTACAGCAAC+AGG 0.436701 tig0014543:-573373 Msa1354880:CDS
GATCATGAGCAATACGGAAA+TGG 0.442149 tig0014543:+573936 None:intergenic
AAATCGTATGGATACGGTCT+TGG 0.446811 tig0014543:+574586 None:intergenic
TTGTGGTAGGCCCCGTTCCT+GGG 0.450790 tig0014543:-573543 Msa1354880:CDS
TTATTACTCTTGCTCCCGTC+GGG 0.465288 tig0014543:+573400 None:intergenic
ATATGTTTCCTTATTCTAAG+TGG 0.468100 tig0014543:-574543 Msa1354880:CDS
TACAGAAATGCAAAATCGTA+TGG 0.481344 tig0014543:+574574 None:intergenic
ACTGCTTCAAATACAGTATC+GGG 0.488265 tig0014543:+573760 None:intergenic
AAAAGCATTTCTAGTTTGCA+TGG 0.489913 tig0014543:+573987 None:intergenic
TGGATACGAAATAACGATAG+TGG 0.491690 tig0014543:-573317 Msa1354880:CDS
AACTGCTTCAAATACAGTAT+CGG 0.494328 tig0014543:+573759 None:intergenic
ATTTCACTATATTTCTTCCC+AGG 0.497196 tig0014543:+573526 None:intergenic
ATGGGATATGCATTTGAAAT+GGG 0.502392 tig0014543:+573895 None:intergenic
GAGCAATACGGAAATGGATC+GGG 0.505456 tig0014543:+573942 None:intergenic
CAAGATCCGTTACGTGTACA+AGG 0.506414 tig0014543:-573145 Msa1354880:CDS
TATATAGATCATGAGCAATA+CGG 0.512581 tig0014543:+573930 None:intergenic
ATCCGCCCGGTAGCTTCTCT+CGG 0.516777 tig0014543:+573847 None:intergenic
AATATCCTATATACGTAGGC+GGG 0.517081 tig0014543:-573447 Msa1354880:CDS
TAATAAGCCTGTAGATATTG+AGG 0.521759 tig0014543:-573800 Msa1354880:CDS
ATGTGGGTGGATTTGGTCAG+GGG 0.523100 tig0014543:-573186 Msa1354880:CDS
TGTGGAACCTCAATATCTAC+AGG 0.524236 tig0014543:+573793 None:intergenic
ATTATTACTCTTGCTCCCGT+CGG 0.527873 tig0014543:+573399 None:intergenic
CCAGAACTTCTTGTTTCAGA+GGG 0.530598 tig0014543:-573250 Msa1354880:CDS
ACTATATTTCTTCCCAGGAA+CGG 0.533921 tig0014543:+573531 None:intergenic
AATGTGGGTGGATTTGGTCA+GGG 0.534197 tig0014543:-573187 Msa1354880:CDS
ATCTCGGGCGAAATACGATC+AGG 0.534200 tig0014543:+573625 None:intergenic
CTAAGTGGTTATTCTATTAG+GGG 0.545375 tig0014543:-574528 Msa1354880:CDS
GAAACAAGAAGTTCTGGTCC+TGG 0.545439 tig0014543:+573256 None:intergenic
GCGGGATCTGGAGAAAGAAT+AGG 0.547213 tig0014543:+573496 None:intergenic
GTAGGCGGGAATAGGGGAAG+GGG 0.547797 tig0014543:-573433 Msa1354880:CDS
AATGCAAAATCGTATGGATA+CGG 0.548969 tig0014543:+574580 None:intergenic
GTGAACATCTCTCTTAGTAG+CGG 0.549431 tig0014543:+573477 None:intergenic
ACCAGAACTTCTTGTTTCAG+AGG 0.553828 tig0014543:-573251 Msa1354880:CDS
AAAATCCGAGAGAAGCTACC+GGG 0.554646 tig0014543:-573852 Msa1354880:CDS
TGAGCAATACGGAAATGGAT+CGG 0.555873 tig0014543:+573941 None:intergenic
GTGATTGATATTATACCGCC+AGG 0.566218 tig0014543:-573274 Msa1354880:CDS
TGAACATCTCTCTTAGTAGC+GGG 0.566429 tig0014543:+573478 None:intergenic
ATTAACGAGTAATCCTAATG+TGG 0.573726 tig0014543:-573203 Msa1354880:CDS
GGGGCCAATTCAAAACCCTC+TGG 0.574508 tig0014543:+573649 None:intergenic
GGGGTCAGATTTATCCCGAC+GGG 0.575656 tig0014543:-573414 Msa1354880:CDS
ACGTAGGCGGGAATAGGGGA+AGG 0.589088 tig0014543:-573435 Msa1354880:CDS
ACGATAGTGGATGCATCGGA+TGG 0.592008 tig0014543:-573304 Msa1354880:CDS
ATCTGGAGAAAGAATAGGAA+AGG 0.599901 tig0014543:+573501 None:intergenic
AACAGACCTTGTACACGTAA+CGG 0.600684 tig0014543:+573139 None:intergenic
GAAAATCCGAGAGAAGCTAC+CGG 0.606144 tig0014543:-573853 Msa1354880:CDS
TGTGGGTGGATTTGGTCAGG+GGG 0.611690 tig0014543:-573185 Msa1354880:CDS
AAATATCCTATATACGTAGG+CGG 0.616381 tig0014543:-573448 Msa1354880:CDS
TTAAAATATCCTATATACGT+AGG 0.623794 tig0014543:-573451 Msa1354880:CDS
ACGAGTAATCCTAATGTGGG+TGG 0.626177 tig0014543:-573199 Msa1354880:CDS
TCGGGCGAAATACGATCAGG+AGG 0.629985 tig0014543:+573628 None:intergenic
ATTAGCACATACAATCCGCC+CGG 0.633238 tig0014543:+573834 None:intergenic
AATAACGATAGTGGATGCAT+CGG 0.634066 tig0014543:-573308 Msa1354880:CDS
TATATTTCTTCCCAGGAACG+GGG 0.637585 tig0014543:+573533 None:intergenic
ATATACGTAGGCGGGAATAG+GGG 0.641009 tig0014543:-573439 Msa1354880:CDS
CGTAGGCGGGAATAGGGGAA+GGG 0.650670 tig0014543:-573434 Msa1354880:CDS
TTAACGAGTAATCCTAATGT+GGG 0.652400 tig0014543:-573202 Msa1354880:CDS
AGATATTGAGGTTCCACAAG+CGG 0.653295 tig0014543:-573788 Msa1354880:CDS
CGGGCGAAATACGATCAGGA+GGG 0.656521 tig0014543:+573629 None:intergenic
GGGCGAAATACGATCAGGAG+GGG 0.658846 tig0014543:+573630 None:intergenic
AGGGGTCAGATTTATCCCGA+CGG 0.672516 tig0014543:-573415 Msa1354880:CDS
GTATCGGGAAGTACCGCTTG+TGG 0.687149 tig0014543:+573775 None:intergenic
ACAAGAAGTTCTGGTCCTGG+CGG 0.692543 tig0014543:+573259 None:intergenic
ATCCGAGAGAAGCTACCGGG+CGG 0.767274 tig0014543:-573849 Msa1354880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATAAATCAGTTAATAAA+AGG + tig0014543:573254-573273 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG - tig0014543:573255-573274 Msa1354880:CDS 15.0%
!!! TAGATACAATTTTAAAATAC+TGG - tig0014543:573391-573410 Msa1354880:CDS 15.0%
!! AAAATTTCTACAATAAGATT+AGG + tig0014543:573651-573670 None:intergenic 15.0%
!!! ACAAGAATATTTTTTTTTGT+GGG + tig0014543:574116-574135 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG - tig0014543:574335-574354 Msa1354880:intron 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG - tig0014543:574604-574623 Msa1354880:CDS 15.0%
!! TACATAAATCAGTTAATAAA+AGG + tig0014543:573254-573273 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG - tig0014543:573255-573274 Msa1354880:CDS 15.0%
!!! TAGATACAATTTTAAAATAC+TGG - tig0014543:573391-573410 Msa1354880:CDS 15.0%
!! AAAATTTCTACAATAAGATT+AGG + tig0014543:573651-573670 None:intergenic 15.0%
!!! ACAAGAATATTTTTTTTTGT+GGG + tig0014543:574116-574135 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG - tig0014543:574335-574354 Msa1354880:intron 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG - tig0014543:574604-574623 Msa1354880:CDS 15.0%
!!! AAAATTGTATCTAAAATGAC+TGG + tig0014543:573384-573403 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG + tig0014543:573492-573511 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG + tig0014543:573583-573602 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG - tig0014543:573652-573671 Msa1354880:CDS 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG + tig0014543:574069-574088 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG + tig0014543:574117-574136 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG - tig0014543:574115-574134 Msa1354880:intron 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG - tig0014543:574119-574138 Msa1354880:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG - tig0014543:574224-574243 Msa1354880:intron 20.0%
!!! AAAATTGTATCTAAAATGAC+TGG + tig0014543:573384-573403 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG + tig0014543:573492-573511 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG + tig0014543:573583-573602 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG - tig0014543:573652-573671 Msa1354880:CDS 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG + tig0014543:574069-574088 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG + tig0014543:574117-574136 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG - tig0014543:574115-574134 Msa1354880:intron 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG - tig0014543:574119-574138 Msa1354880:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG - tig0014543:574224-574243 Msa1354880:intron 20.0%
! ATATGTTTCCTTATTCTAAG+TGG - tig0014543:573132-573151 Msa1354880:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG + tig0014543:573143-573162 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG - tig0014543:573145-573164 Msa1354880:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG - tig0014543:573146-573165 Msa1354880:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG - tig0014543:573178-573197 Msa1354880:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG - tig0014543:573179-573198 Msa1354880:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG - tig0014543:573342-573361 Msa1354880:CDS 25.0%
! GAGATACACGATTTAAATAA+CGG + tig0014543:573422-573441 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG - tig0014543:573601-573620 Msa1354880:CDS 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG - tig0014543:573606-573625 Msa1354880:CDS 25.0%
!!! AAATAGCAGAATAATGGATA+GGG - tig0014543:573607-573626 Msa1354880:CDS 25.0%
! TTTCTACAATAAGATTAGGT+AGG + tig0014543:573647-573666 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG - tig0014543:573664-573683 Msa1354880:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG - tig0014543:573694-573713 Msa1354880:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG - tig0014543:573701-573720 Msa1354880:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG + tig0014543:573748-573767 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG + tig0014543:573951-573970 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG - tig0014543:573973-573992 Msa1354880:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG + tig0014543:574068-574087 None:intergenic 25.0%
! ATTATACGAAAAGAAAAAGG+TGG - tig0014543:574338-574357 Msa1354880:intron 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG - tig0014543:574577-574596 Msa1354880:CDS 25.0%
! ATATGTTTCCTTATTCTAAG+TGG - tig0014543:573132-573151 Msa1354880:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG + tig0014543:573143-573162 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG - tig0014543:573145-573164 Msa1354880:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG - tig0014543:573146-573165 Msa1354880:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG - tig0014543:573178-573197 Msa1354880:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG - tig0014543:573179-573198 Msa1354880:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG - tig0014543:573342-573361 Msa1354880:CDS 25.0%
! GAGATACACGATTTAAATAA+CGG + tig0014543:573422-573441 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG - tig0014543:573601-573620 Msa1354880:CDS 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG - tig0014543:573606-573625 Msa1354880:CDS 25.0%
!!! AAATAGCAGAATAATGGATA+GGG - tig0014543:573607-573626 Msa1354880:CDS 25.0%
! TTTCTACAATAAGATTAGGT+AGG + tig0014543:573647-573666 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG - tig0014543:573664-573683 Msa1354880:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG - tig0014543:573694-573713 Msa1354880:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG - tig0014543:573701-573720 Msa1354880:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG + tig0014543:573748-573767 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG + tig0014543:573951-573970 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG - tig0014543:573973-573992 Msa1354880:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG + tig0014543:574068-574087 None:intergenic 25.0%
! ATTATACGAAAAGAAAAAGG+TGG - tig0014543:574338-574357 Msa1354880:intron 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG - tig0014543:574577-574596 Msa1354880:CDS 25.0%
AATGCAAAATCGTATGGATA+CGG + tig0014543:573098-573117 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG + tig0014543:573104-573123 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG - tig0014543:573147-573166 Msa1354880:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG + tig0014543:573376-573395 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG + tig0014543:573444-573463 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG - tig0014543:573570-573589 Msa1354880:CDS 30.0%
AATAAGATTAGGTAGGTTAC+TGG + tig0014543:573640-573659 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG + tig0014543:573691-573710 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG + tig0014543:573783-573802 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG + tig0014543:573784-573803 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG - tig0014543:573875-573894 Msa1354880:CDS 30.0%
AACTGCTTCAAATACAGTAT+CGG + tig0014543:573919-573938 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG - tig0014543:573963-573982 Msa1354880:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG - tig0014543:573972-573991 Msa1354880:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG - tig0014543:573974-573993 Msa1354880:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG - tig0014543:574065-574084 Msa1354880:intron 30.0%
ATTTCACTATATTTCTTCCC+AGG + tig0014543:574152-574171 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG - tig0014543:574227-574246 Msa1354880:intron 30.0%
ACATTAGGATTACTCGTTAA+TGG + tig0014543:574473-574492 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG - tig0014543:574472-574491 Msa1354880:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG - tig0014543:574473-574492 Msa1354880:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG - tig0014543:574562-574581 Msa1354880:CDS 30.0%
AATGCAAAATCGTATGGATA+CGG + tig0014543:573098-573117 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG + tig0014543:573104-573123 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG - tig0014543:573147-573166 Msa1354880:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG + tig0014543:573376-573395 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG + tig0014543:573444-573463 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG - tig0014543:573570-573589 Msa1354880:CDS 30.0%
AATAAGATTAGGTAGGTTAC+TGG + tig0014543:573640-573659 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG + tig0014543:573691-573710 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG + tig0014543:573783-573802 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG + tig0014543:573784-573803 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG - tig0014543:573875-573894 Msa1354880:CDS 30.0%
AACTGCTTCAAATACAGTAT+CGG + tig0014543:573919-573938 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG - tig0014543:573963-573982 Msa1354880:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG - tig0014543:573972-573991 Msa1354880:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG - tig0014543:573974-573993 Msa1354880:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG - tig0014543:574065-574084 Msa1354880:intron 30.0%
ATTTCACTATATTTCTTCCC+AGG + tig0014543:574152-574171 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG - tig0014543:574227-574246 Msa1354880:intron 30.0%
ACATTAGGATTACTCGTTAA+TGG + tig0014543:574473-574492 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG - tig0014543:574472-574491 Msa1354880:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG - tig0014543:574473-574492 Msa1354880:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG - tig0014543:574562-574581 Msa1354880:CDS 30.0%
ATAGGATTCCATTCAACTCA+TGG - tig0014543:573273-573292 Msa1354880:CDS 35.0%
ATTCCATTCAACTCATGGTT+GGG - tig0014543:573278-573297 Msa1354880:CDS 35.0%
ATGGTTGGGAACTAATGATT+GGG - tig0014543:573292-573311 Msa1354880:CDS 35.0%
! GGGTCTGTCTATAAAGATTT+TGG - tig0014543:573312-573331 Msa1354880:CDS 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG - tig0014543:573794-573813 Msa1354880:CDS 35.0%
!! TATCCCATTTTTGCTCAACA+GGG - tig0014543:573795-573814 Msa1354880:CDS 35.0%
TAACCCTGTTGAGCAAAAAT+GGG + tig0014543:573801-573820 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG + tig0014543:573802-573821 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG + tig0014543:573869-573888 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG + tig0014543:573918-573937 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG - tig0014543:573987-574006 Msa1354880:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG - tig0014543:574010-574029 Msa1354880:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG - tig0014543:574011-574030 Msa1354880:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG - tig0014543:574022-574041 Msa1354880:intron 35.0%
ACTATATTTCTTCCCAGGAA+CGG + tig0014543:574147-574166 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG + tig0014543:574177-574196 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG - tig0014543:574228-574247 Msa1354880:intron 35.0%
GTTTATAATGCTACAGCAAC+AGG - tig0014543:574302-574321 Msa1354880:intron 35.0%
TGGATACGAAATAACGATAG+TGG - tig0014543:574358-574377 Msa1354880:intron 35.0%
!! AATAACGATAGTGGATGCAT+CGG - tig0014543:574367-574386 Msa1354880:intron 35.0%
ATAGGATTCCATTCAACTCA+TGG - tig0014543:573273-573292 Msa1354880:CDS 35.0%
ATTCCATTCAACTCATGGTT+GGG - tig0014543:573278-573297 Msa1354880:CDS 35.0%
ATGGTTGGGAACTAATGATT+GGG - tig0014543:573292-573311 Msa1354880:CDS 35.0%
! GGGTCTGTCTATAAAGATTT+TGG - tig0014543:573312-573331 Msa1354880:CDS 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG - tig0014543:573794-573813 Msa1354880:CDS 35.0%
!! TATCCCATTTTTGCTCAACA+GGG - tig0014543:573795-573814 Msa1354880:CDS 35.0%
TAACCCTGTTGAGCAAAAAT+GGG + tig0014543:573801-573820 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG + tig0014543:573802-573821 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG + tig0014543:573869-573888 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG + tig0014543:573918-573937 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG - tig0014543:573987-574006 Msa1354880:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG - tig0014543:574010-574029 Msa1354880:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG - tig0014543:574011-574030 Msa1354880:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG - tig0014543:574022-574041 Msa1354880:intron 35.0%
ACTATATTTCTTCCCAGGAA+CGG + tig0014543:574147-574166 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG + tig0014543:574177-574196 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG - tig0014543:574228-574247 Msa1354880:intron 35.0%
GTTTATAATGCTACAGCAAC+AGG - tig0014543:574302-574321 Msa1354880:intron 35.0%
TGGATACGAAATAACGATAG+TGG - tig0014543:574358-574377 Msa1354880:intron 35.0%
!! AATAACGATAGTGGATGCAT+CGG - tig0014543:574367-574386 Msa1354880:intron 35.0%
GGTTGTTCGTCTCTATCAAT+TGG + tig0014543:573071-573090 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG + tig0014543:573092-573111 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG - tig0014543:573277-573296 Msa1354880:CDS 40.0%
CATGGTTGGGAACTAATGAT+TGG - tig0014543:573291-573310 Msa1354880:CDS 40.0%
TGAGCAATACGGAAATGGAT+CGG + tig0014543:573737-573756 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG + tig0014543:573742-573761 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG + tig0014543:573885-573904 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG - tig0014543:573887-573906 Msa1354880:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG + tig0014543:574145-574164 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG + tig0014543:574146-574165 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG + tig0014543:574200-574219 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG + tig0014543:574201-574220 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG - tig0014543:574235-574254 Msa1354880:intron 40.0%
ATTATTACTCTTGCTCCCGT+CGG + tig0014543:574279-574298 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG - tig0014543:574401-574420 Msa1354880:intron 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG - tig0014543:574424-574443 Msa1354880:intron 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG - tig0014543:574425-574444 Msa1354880:intron 40.0%
! AATCCTAATGTGGGTGGATT+TGG - tig0014543:574482-574501 Msa1354880:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG + tig0014543:574539-574558 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG - tig0014543:574547-574566 Msa1354880:CDS 40.0%
GGTTGTTCGTCTCTATCAAT+TGG + tig0014543:573071-573090 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG + tig0014543:573092-573111 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG - tig0014543:573277-573296 Msa1354880:CDS 40.0%
CATGGTTGGGAACTAATGAT+TGG - tig0014543:573291-573310 Msa1354880:CDS 40.0%
TGAGCAATACGGAAATGGAT+CGG + tig0014543:573737-573756 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG + tig0014543:573742-573761 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG + tig0014543:573885-573904 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG - tig0014543:573887-573906 Msa1354880:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG + tig0014543:574145-574164 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG + tig0014543:574146-574165 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG + tig0014543:574200-574219 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG + tig0014543:574201-574220 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG - tig0014543:574235-574254 Msa1354880:intron 40.0%
ATTATTACTCTTGCTCCCGT+CGG + tig0014543:574279-574298 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG - tig0014543:574401-574420 Msa1354880:intron 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG - tig0014543:574424-574443 Msa1354880:intron 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG - tig0014543:574425-574444 Msa1354880:intron 40.0%
! AATCCTAATGTGGGTGGATT+TGG - tig0014543:574482-574501 Msa1354880:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG + tig0014543:574539-574558 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG - tig0014543:574547-574566 Msa1354880:CDS 40.0%
! GTTCCCAACCATGAGTTGAA+TGG + tig0014543:573284-573303 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG + tig0014543:573736-573755 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG - tig0014543:573822-573841 Msa1354880:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG - tig0014543:573823-573842 Msa1354880:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG + tig0014543:573844-573863 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG + tig0014543:574236-574255 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG - tig0014543:574234-574253 Msa1354880:intron 45.0%
ATATACGTAGGCGGGAATAG+GGG - tig0014543:574236-574255 Msa1354880:intron 45.0%
TTATTACTCTTGCTCCCGTC+GGG + tig0014543:574278-574297 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG + tig0014543:574422-574441 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG + tig0014543:574428-574447 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG - tig0014543:574476-574495 Msa1354880:CDS 45.0%
TGACCAAATCCACCCACATT+AGG + tig0014543:574488-574507 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG - tig0014543:574487-574506 Msa1354880:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG - tig0014543:574488-574507 Msa1354880:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG - tig0014543:574530-574549 Msa1354880:CDS 45.0%
! GTTCCCAACCATGAGTTGAA+TGG + tig0014543:573284-573303 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG + tig0014543:573736-573755 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG - tig0014543:573822-573841 Msa1354880:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG - tig0014543:573823-573842 Msa1354880:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG + tig0014543:573844-573863 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG + tig0014543:574236-574255 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG - tig0014543:574234-574253 Msa1354880:intron 45.0%
ATATACGTAGGCGGGAATAG+GGG - tig0014543:574236-574255 Msa1354880:intron 45.0%
TTATTACTCTTGCTCCCGTC+GGG + tig0014543:574278-574297 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG + tig0014543:574422-574441 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG + tig0014543:574428-574447 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG - tig0014543:574476-574495 Msa1354880:CDS 45.0%
TGACCAAATCCACCCACATT+AGG + tig0014543:574488-574507 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG - tig0014543:574487-574506 Msa1354880:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG - tig0014543:574488-574507 Msa1354880:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG - tig0014543:574530-574549 Msa1354880:CDS 45.0%
!!! AAAAAAACAAATTTTATAAT+TGG + tig0014543:573500-573519 None:intergenic 5.0%
!!! AAAAAAACAAATTTTATAAT+TGG + tig0014543:573500-573519 None:intergenic 5.0%
ATCTCGGGCGAAATACGATC+AGG + tig0014543:574053-574072 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG + tig0014543:574182-574201 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG + tig0014543:574194-574213 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG - tig0014543:574260-574279 Msa1354880:intron 50.0%
!! ACGATAGTGGATGCATCGGA+TGG - tig0014543:574371-574390 Msa1354880:intron 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG + tig0014543:574419-574438 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG - tig0014543:574489-574508 Msa1354880:CDS 50.0%
ATCTCGGGCGAAATACGATC+AGG + tig0014543:574053-574072 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG + tig0014543:574182-574201 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG + tig0014543:574194-574213 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG - tig0014543:574260-574279 Msa1354880:intron 50.0%
!! ACGATAGTGGATGCATCGGA+TGG - tig0014543:574371-574390 Msa1354880:intron 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG + tig0014543:574419-574438 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG - tig0014543:574489-574508 Msa1354880:CDS 50.0%
!! GTATCGGGAAGTACCGCTTG+TGG + tig0014543:573903-573922 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG + tig0014543:574029-574048 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG + tig0014543:574048-574067 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG + tig0014543:574049-574068 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG + tig0014543:574050-574069 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG - tig0014543:574261-574280 Msa1354880:intron 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG - tig0014543:574490-574509 Msa1354880:CDS 55.0%
!! GTATCGGGAAGTACCGCTTG+TGG + tig0014543:573903-573922 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG + tig0014543:574029-574048 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG + tig0014543:574048-574067 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG + tig0014543:574049-574068 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG + tig0014543:574050-574069 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG - tig0014543:574261-574280 Msa1354880:intron 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG - tig0014543:574490-574509 Msa1354880:CDS 55.0%
ATCCGAGAGAAGCTACCGGG+CGG - tig0014543:573826-573845 Msa1354880:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG + tig0014543:573831-573850 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG - tig0014543:574132-574151 Msa1354880:intron 60.0%
ACGTAGGCGGGAATAGGGGA+AGG - tig0014543:574240-574259 Msa1354880:intron 60.0%
CGTAGGCGGGAATAGGGGAA+GGG - tig0014543:574241-574260 Msa1354880:intron 60.0%
GTAGGCGGGAATAGGGGAAG+GGG - tig0014543:574242-574261 Msa1354880:intron 60.0%
ATCCGAGAGAAGCTACCGGG+CGG - tig0014543:573826-573845 Msa1354880:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG + tig0014543:573831-573850 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG - tig0014543:574132-574151 Msa1354880:intron 60.0%
ACGTAGGCGGGAATAGGGGA+AGG - tig0014543:574240-574259 Msa1354880:intron 60.0%
CGTAGGCGGGAATAGGGGAA+GGG - tig0014543:574241-574260 Msa1354880:intron 60.0%
GTAGGCGGGAATAGGGGAAG+GGG - tig0014543:574242-574261 Msa1354880:intron 60.0%
CTTGTGGTAGGCCCCGTTCC+TGG - tig0014543:574131-574150 Msa1354880:intron 65.0%
CTTGTGGTAGGCCCCGTTCC+TGG - tig0014543:574131-574150 Msa1354880:intron 65.0%
Chromosome Type Strat End Strand Name
tig0014543 gene 573045 574652 573045 ID=Msa1354880;Name=Msa1354880
tig0014543 mRNA 573045 574652 573045 ID=Msa1354880-mRNA-1;Parent=Msa1354880;Name=Msa1354880-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|0|0|2|0|389
tig0014543 exon 574472 574652 574472 ID=Msa1354880-mRNA-1:exon:9232;Parent=Msa1354880-mRNA-1
tig0014543 exon 573045 574033 573045 ID=Msa1354880-mRNA-1:exon:9231;Parent=Msa1354880-mRNA-1
tig0014543 CDS 574472 574652 574472 ID=Msa1354880-mRNA-1:cds;Parent=Msa1354880-mRNA-1
tig0014543 CDS 573045 574033 573045 ID=Msa1354880-mRNA-1:cds;Parent=Msa1354880-mRNA-1
Gene Sequence

>Msa1354880

ATGGAAATCTACAAAGAAAGCATCCAATTGATAGAGACGAACAACCAAGACCGTATCCATACGATTTTGCATTTCTGTACAAATATAATATGTTTCCTTATTCTAAGTGGTTATTCTATTAGGGGTAATCAAGAACTCATTATTCTTAACTCTTGGGTTCAAGAATTTCTATATAACTTAAAAATTTTCAGGATGAATGATTGGACCATGCAAACTAGAAATGCTTTTTCTTGGATAAAGGAAGAGATTACCCGATCCATTTCCGTATTGCTCATGATCTATATAATAACTCGAGCACCCATTTCAAATGCATATCCCATTTTTGCTCAACAGGGTTATGAAAATCCGAGAGAAGCTACCGGGCGGATTGTATGTGCTAATTGCCATTTAGCTAATAAGCCTGTAGATATTGAGGTTCCACAAGCGGTACTTCCCGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAAGTTAAACAAGTTCTTGCTAATGGTAAAAAAGGGGCTTTGAATGTAGGTGCTGTTCTTATTTTACCAGAGGGTTTTGAATTGGCCCCTCCTGATCGTATTTCGCCCGAGATTAAAGAAAAAATAGGTAATTTGTCTTTTCAAAGCTATCGTCCCACAAAAAAAAATATTCTTGTGGTAGGCCCCGTTCCTGGGAAGAAATATAGTGAAATTACCTTTCCTATTCTTTCTCCAGATCCCGCTACTAAGAGAGATGTTCACTTCTTAAAATATCCTATATACGTAGGCGGGAATAGGGGAAGGGGTCAGATTTATCCCGACGGGAGCAAGAGTAATAATAATGTTTATAATGCTACAGCAACAGGTATAGTAAATAAAATTATACGAAAAGAAAAAGGTGGATACGAAATAACGATAGTGGATGCATCGGATGGACGTGAAGTGATTGATATTATACCGCCAGGACCAGAACTTCTTGTTTCAGAGGGTGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGTGGATTTGGTCAGGGGGATGCAGAAATAGTGCTTCAAGATCCGTTACGTGTACAAGGTCTGTTGTTCTTCTTGGCATCTATTATTTTGGCACAAATCTTTTTGGTTCTTAAAAAGAAACAATTTGAAAAGGTTCAATTGTCCGAAATGAATTTTTAG

Protein sequence

>Msa1354880

MEIYKESIQLIETNNQDRIHTILHFCTNIICFLILSGYSIRGNQELIILNSWVQEFLYNLKIFRMNDWTMQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQVKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEIKEKIGNLSFQSYRPTKKNILVVGPVPGKKYSEITFPILSPDPATKRDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATATGIVNKIIRKEKGGYEITIVDASDGREVIDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASIILAQIFLVLKKKQFEKVQLSEMNF*