AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1355050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1355050 MtrunA17_CPg0492851 99.692 325 1 0 65 389 1 325 0.0 659
Msa1355050 MtrunA17_Chr4g0015731 99.692 325 1 0 65 389 1 325 0.0 659
Msa1355050 MtrunA17_Chr4g0016821 99.692 325 1 0 65 389 1 325 0.0 659
Msa1355050 MtrunA17_Chr4g0016981 83.186 113 4 1 108 220 42 139 2.08e-58 187
Msa1355050 MtrunA17_Chr4g0016991 95.385 65 3 0 325 389 1 65 4.08e-36 126
Msa1355050 MtrunA17_Chr5g0403621 96.667 60 2 0 1 60 86 145 4.59e-35 127
Msa1355050 MtrunA17_Chr4g0016811 98.333 60 1 0 1 60 95 154 2.12e-34 127
Msa1355050 MtrunA17_CPg0492871 98.333 60 1 0 1 60 86 145 2.37e-34 127
Msa1355050 MtrunA17_Chr4g0015721 98.333 60 1 0 1 60 86 145 2.37e-34 127
Msa1355050 MtrunA17_Chr3g0141111 94.737 57 3 0 1 57 15 71 3.31e-33 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1355050 ATCG00540.1 90.625 320 30 0 70 389 1 320 0.0 595
Msa1355050 ATCG00530.1 67.241 58 19 0 3 60 88 145 2.46e-18 83.6

Find 87 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTGGCATCTATTATTT+TGG 0.108321 tig0014543:-698620 Msa1355050:CDS
TTCTAAGTGGTTATTCTATT+AGG 0.170612 tig0014543:-700037 Msa1355050:CDS
ACAAGGTCTGTTGTTCTTCT+TGG 0.210830 tig0014543:-698635 Msa1355050:CDS
TCTAAGTGGTTATTCTATTA+GGG 0.213858 tig0014543:-700036 Msa1355050:CDS
CTTGTGGTAGGCCCCGTTCC+TGG 0.214230 tig0014543:-699051 Msa1355050:CDS
ACATTAGGATTACTCGTTAA+TGG 0.226644 tig0014543:+698712 None:intergenic
TAGAATAACCACTTAGAATA+AGG 0.296044 tig0014543:+700042 None:intergenic
CTACAGGCTTATTAGCTAAA+TGG 0.299374 tig0014543:+699316 None:intergenic
CTATATACGTAGGCGGGAAT+AGG 0.308836 tig0014543:-698948 Msa1355050:CDS
CTATATTTCTTCCCAGGAAC+GGG 0.314257 tig0014543:+699039 None:intergenic
AATCCTAATGTGGGTGGATT+TGG 0.318985 tig0014543:-698700 Msa1355050:CDS
AACTCATTATTCTTAACTCT+TGG 0.323937 tig0014543:-700004 Msa1355050:CDS
AAAATTATACGAAAAGAAAA+AGG 0.339453 tig0014543:-698847 Msa1355050:CDS
TATATACGTAGGCGGGAATA+GGG 0.340058 tig0014543:-698947 Msa1355050:CDS
CTATTCCCGCCTACGTATAT+AGG 0.341092 tig0014543:+698949 None:intergenic
GTTAAACAAGTTCTTGCTAA+TGG 0.346567 tig0014543:-699219 Msa1355050:CDS
GGTTGTTCGTCTCTATCAAT+TGG 0.367131 tig0014543:+700114 None:intergenic
CCCTCTGAAACAAGAAGTTC+TGG 0.373836 tig0014543:+698757 None:intergenic
TAATGTGGGTGGATTTGGTC+AGG 0.386047 tig0014543:-698695 Msa1355050:CDS
TGACCAAATCCACCCACATT+AGG 0.412065 tig0014543:+698697 None:intergenic
TGTTTAACTTGCATATCATA+AGG 0.412925 tig0014543:+699234 None:intergenic
ACTCATTATTCTTAACTCTT+GGG 0.414290 tig0014543:-700003 Msa1355050:CDS
TCTCTCTTAGTAGCGGGATC+TGG 0.425976 tig0014543:+698991 None:intergenic
AATGGGATATGCATTTGAAA+TGG 0.432612 tig0014543:+699401 None:intergenic
GTTTATAATGCTACAGCAAC+AGG 0.436701 tig0014543:-698880 Msa1355050:CDS
GATCATGAGCAATACGGAAA+TGG 0.442149 tig0014543:+699443 None:intergenic
AAATCGTATGGATACGGTCT+TGG 0.446811 tig0014543:+700093 None:intergenic
TTGTGGTAGGCCCCGTTCCT+GGG 0.450790 tig0014543:-699050 Msa1355050:CDS
TTATTACTCTTGCTCCCGTC+GGG 0.465288 tig0014543:+698907 None:intergenic
ATATGTTTCCTTATTCTAAG+TGG 0.468100 tig0014543:-700050 Msa1355050:CDS
TACAGAAATGCAAAATCGTA+TGG 0.481344 tig0014543:+700081 None:intergenic
ACTGCTTCAAATACAGTATC+GGG 0.488265 tig0014543:+699267 None:intergenic
AAAAGCATTTCTAGTTTGCA+TGG 0.489913 tig0014543:+699494 None:intergenic
TGGATACGAAATAACGATAG+TGG 0.491690 tig0014543:-698824 Msa1355050:CDS
AACTGCTTCAAATACAGTAT+CGG 0.494328 tig0014543:+699266 None:intergenic
ATTTCACTATATTTCTTCCC+AGG 0.497196 tig0014543:+699033 None:intergenic
ATGGGATATGCATTTGAAAT+GGG 0.502392 tig0014543:+699402 None:intergenic
GAGCAATACGGAAATGGATC+GGG 0.505456 tig0014543:+699449 None:intergenic
CAAGATCCGTTACGTGTACA+AGG 0.506414 tig0014543:-698652 Msa1355050:CDS
TATATAGATCATGAGCAATA+CGG 0.512581 tig0014543:+699437 None:intergenic
ATCCGCCCGGTAGCTTCTCT+CGG 0.516777 tig0014543:+699354 None:intergenic
AATATCCTATATACGTAGGC+GGG 0.517081 tig0014543:-698954 Msa1355050:CDS
TAATAAGCCTGTAGATATTG+AGG 0.521759 tig0014543:-699307 Msa1355050:CDS
ATGTGGGTGGATTTGGTCAG+GGG 0.523100 tig0014543:-698693 Msa1355050:CDS
TGTGGAACCTCAATATCTAC+AGG 0.524236 tig0014543:+699300 None:intergenic
ATTATTACTCTTGCTCCCGT+CGG 0.527873 tig0014543:+698906 None:intergenic
CCAGAACTTCTTGTTTCAGA+GGG 0.530598 tig0014543:-698757 Msa1355050:CDS
ACTATATTTCTTCCCAGGAA+CGG 0.533921 tig0014543:+699038 None:intergenic
AATGTGGGTGGATTTGGTCA+GGG 0.534197 tig0014543:-698694 Msa1355050:CDS
ATCTCGGGCGAAATACGATC+AGG 0.534200 tig0014543:+699132 None:intergenic
CTAAGTGGTTATTCTATTAG+GGG 0.545375 tig0014543:-700035 Msa1355050:CDS
GAAACAAGAAGTTCTGGTCC+TGG 0.545439 tig0014543:+698763 None:intergenic
GCGGGATCTGGAGAAAGAAT+AGG 0.547213 tig0014543:+699003 None:intergenic
GTAGGCGGGAATAGGGGAAG+GGG 0.547797 tig0014543:-698940 Msa1355050:CDS
AATGCAAAATCGTATGGATA+CGG 0.548969 tig0014543:+700087 None:intergenic
GTGAACATCTCTCTTAGTAG+CGG 0.549431 tig0014543:+698984 None:intergenic
ACCAGAACTTCTTGTTTCAG+AGG 0.553828 tig0014543:-698758 Msa1355050:CDS
AAAATCCGAGAGAAGCTACC+GGG 0.554646 tig0014543:-699359 Msa1355050:CDS
TGAGCAATACGGAAATGGAT+CGG 0.555873 tig0014543:+699448 None:intergenic
GTGATTGATATTATACCGCC+AGG 0.566218 tig0014543:-698781 Msa1355050:CDS
TGAACATCTCTCTTAGTAGC+GGG 0.566429 tig0014543:+698985 None:intergenic
ATTAACGAGTAATCCTAATG+TGG 0.573726 tig0014543:-698710 Msa1355050:CDS
GGGGCCAATTCAAAACCCTC+TGG 0.574508 tig0014543:+699156 None:intergenic
GGGGTCAGATTTATCCCGAC+GGG 0.575656 tig0014543:-698921 Msa1355050:CDS
ACGTAGGCGGGAATAGGGGA+AGG 0.589088 tig0014543:-698942 Msa1355050:CDS
ACGATAGTGGATGCATCGGA+TGG 0.592008 tig0014543:-698811 Msa1355050:CDS
ATCTGGAGAAAGAATAGGAA+AGG 0.599901 tig0014543:+699008 None:intergenic
AACAGACCTTGTACACGTAA+CGG 0.600684 tig0014543:+698646 None:intergenic
GAAAATCCGAGAGAAGCTAC+CGG 0.606144 tig0014543:-699360 Msa1355050:CDS
TGTGGGTGGATTTGGTCAGG+GGG 0.611690 tig0014543:-698692 Msa1355050:CDS
AAATATCCTATATACGTAGG+CGG 0.616381 tig0014543:-698955 Msa1355050:CDS
TTAAAATATCCTATATACGT+AGG 0.623794 tig0014543:-698958 Msa1355050:CDS
ACGAGTAATCCTAATGTGGG+TGG 0.626177 tig0014543:-698706 Msa1355050:CDS
TCGGGCGAAATACGATCAGG+AGG 0.629985 tig0014543:+699135 None:intergenic
ATTAGCACATACAATCCGCC+CGG 0.633238 tig0014543:+699341 None:intergenic
AATAACGATAGTGGATGCAT+CGG 0.634066 tig0014543:-698815 Msa1355050:CDS
TATATTTCTTCCCAGGAACG+GGG 0.637585 tig0014543:+699040 None:intergenic
ATATACGTAGGCGGGAATAG+GGG 0.641009 tig0014543:-698946 Msa1355050:CDS
CGTAGGCGGGAATAGGGGAA+GGG 0.650670 tig0014543:-698941 Msa1355050:CDS
TTAACGAGTAATCCTAATGT+GGG 0.652400 tig0014543:-698709 Msa1355050:CDS
AGATATTGAGGTTCCACAAG+CGG 0.653295 tig0014543:-699295 Msa1355050:CDS
CGGGCGAAATACGATCAGGA+GGG 0.656521 tig0014543:+699136 None:intergenic
GGGCGAAATACGATCAGGAG+GGG 0.658846 tig0014543:+699137 None:intergenic
AGGGGTCAGATTTATCCCGA+CGG 0.672516 tig0014543:-698922 Msa1355050:CDS
GTATCGGGAAGTACCGCTTG+TGG 0.687149 tig0014543:+699282 None:intergenic
ACAAGAAGTTCTGGTCCTGG+CGG 0.692543 tig0014543:+698766 None:intergenic
ATCCGAGAGAAGCTACCGGG+CGG 0.767274 tig0014543:-699356 Msa1355050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATAAATCAGTTAATAAA+AGG + tig0014543:698761-698780 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG - tig0014543:698762-698781 Msa1355050:CDS 15.0%
!!! TAGATACAATTTTAAAATAC+TGG - tig0014543:698898-698917 Msa1355050:CDS 15.0%
!! AAAATTTCTACAATAAGATT+AGG + tig0014543:699158-699177 None:intergenic 15.0%
!!! ACAAGAATATTTTTTTTTGT+GGG + tig0014543:699623-699642 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG - tig0014543:699842-699861 Msa1355050:intron 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG - tig0014543:700111-700130 Msa1355050:CDS 15.0%
!! TACATAAATCAGTTAATAAA+AGG + tig0014543:698761-698780 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG - tig0014543:698762-698781 Msa1355050:CDS 15.0%
!!! TAGATACAATTTTAAAATAC+TGG - tig0014543:698898-698917 Msa1355050:CDS 15.0%
!! AAAATTTCTACAATAAGATT+AGG + tig0014543:699158-699177 None:intergenic 15.0%
!!! ACAAGAATATTTTTTTTTGT+GGG + tig0014543:699623-699642 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG - tig0014543:699842-699861 Msa1355050:intron 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG - tig0014543:700111-700130 Msa1355050:CDS 15.0%
!!! AAAATTGTATCTAAAATGAC+TGG + tig0014543:698891-698910 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG + tig0014543:698999-699018 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG + tig0014543:699090-699109 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG - tig0014543:699159-699178 Msa1355050:CDS 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG + tig0014543:699576-699595 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG + tig0014543:699624-699643 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG - tig0014543:699622-699641 Msa1355050:intron 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG - tig0014543:699626-699645 Msa1355050:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG - tig0014543:699731-699750 Msa1355050:intron 20.0%
!!! AAAATTGTATCTAAAATGAC+TGG + tig0014543:698891-698910 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG + tig0014543:698999-699018 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG + tig0014543:699090-699109 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG - tig0014543:699159-699178 Msa1355050:CDS 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG + tig0014543:699576-699595 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG + tig0014543:699624-699643 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG - tig0014543:699622-699641 Msa1355050:intron 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG - tig0014543:699626-699645 Msa1355050:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG - tig0014543:699731-699750 Msa1355050:intron 20.0%
! ATATGTTTCCTTATTCTAAG+TGG - tig0014543:698639-698658 Msa1355050:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG + tig0014543:698650-698669 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG - tig0014543:698652-698671 Msa1355050:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG - tig0014543:698653-698672 Msa1355050:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG - tig0014543:698685-698704 Msa1355050:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG - tig0014543:698686-698705 Msa1355050:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG - tig0014543:698849-698868 Msa1355050:CDS 25.0%
! GAGATACACGATTTAAATAA+CGG + tig0014543:698929-698948 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG - tig0014543:699108-699127 Msa1355050:CDS 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG - tig0014543:699113-699132 Msa1355050:CDS 25.0%
!!! AAATAGCAGAATAATGGATA+GGG - tig0014543:699114-699133 Msa1355050:CDS 25.0%
! TTTCTACAATAAGATTAGGT+AGG + tig0014543:699154-699173 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG - tig0014543:699171-699190 Msa1355050:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG - tig0014543:699201-699220 Msa1355050:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG - tig0014543:699208-699227 Msa1355050:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG + tig0014543:699255-699274 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG + tig0014543:699458-699477 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG - tig0014543:699480-699499 Msa1355050:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG + tig0014543:699575-699594 None:intergenic 25.0%
! ATTATACGAAAAGAAAAAGG+TGG - tig0014543:699845-699864 Msa1355050:intron 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG - tig0014543:700084-700103 Msa1355050:CDS 25.0%
! ATATGTTTCCTTATTCTAAG+TGG - tig0014543:698639-698658 Msa1355050:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG + tig0014543:698650-698669 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG - tig0014543:698652-698671 Msa1355050:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG - tig0014543:698653-698672 Msa1355050:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG - tig0014543:698685-698704 Msa1355050:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG - tig0014543:698686-698705 Msa1355050:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG - tig0014543:698849-698868 Msa1355050:CDS 25.0%
! GAGATACACGATTTAAATAA+CGG + tig0014543:698929-698948 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG - tig0014543:699108-699127 Msa1355050:CDS 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG - tig0014543:699113-699132 Msa1355050:CDS 25.0%
!!! AAATAGCAGAATAATGGATA+GGG - tig0014543:699114-699133 Msa1355050:CDS 25.0%
! TTTCTACAATAAGATTAGGT+AGG + tig0014543:699154-699173 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG - tig0014543:699171-699190 Msa1355050:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG - tig0014543:699201-699220 Msa1355050:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG - tig0014543:699208-699227 Msa1355050:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG + tig0014543:699255-699274 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG + tig0014543:699458-699477 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG - tig0014543:699480-699499 Msa1355050:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG + tig0014543:699575-699594 None:intergenic 25.0%
! ATTATACGAAAAGAAAAAGG+TGG - tig0014543:699845-699864 Msa1355050:intron 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG - tig0014543:700084-700103 Msa1355050:CDS 25.0%
AATGCAAAATCGTATGGATA+CGG + tig0014543:698605-698624 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG + tig0014543:698611-698630 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG - tig0014543:698654-698673 Msa1355050:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG + tig0014543:698883-698902 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG + tig0014543:698951-698970 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG - tig0014543:699077-699096 Msa1355050:CDS 30.0%
AATAAGATTAGGTAGGTTAC+TGG + tig0014543:699147-699166 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG + tig0014543:699198-699217 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG + tig0014543:699290-699309 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG + tig0014543:699291-699310 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG - tig0014543:699382-699401 Msa1355050:CDS 30.0%
AACTGCTTCAAATACAGTAT+CGG + tig0014543:699426-699445 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG - tig0014543:699470-699489 Msa1355050:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG - tig0014543:699479-699498 Msa1355050:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG - tig0014543:699481-699500 Msa1355050:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG - tig0014543:699572-699591 Msa1355050:intron 30.0%
ATTTCACTATATTTCTTCCC+AGG + tig0014543:699659-699678 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG - tig0014543:699734-699753 Msa1355050:intron 30.0%
ACATTAGGATTACTCGTTAA+TGG + tig0014543:699980-699999 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG - tig0014543:699979-699998 Msa1355050:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG - tig0014543:699980-699999 Msa1355050:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG - tig0014543:700069-700088 Msa1355050:CDS 30.0%
AATGCAAAATCGTATGGATA+CGG + tig0014543:698605-698624 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG + tig0014543:698611-698630 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG - tig0014543:698654-698673 Msa1355050:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG + tig0014543:698883-698902 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG + tig0014543:698951-698970 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG - tig0014543:699077-699096 Msa1355050:CDS 30.0%
AATAAGATTAGGTAGGTTAC+TGG + tig0014543:699147-699166 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG + tig0014543:699198-699217 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG + tig0014543:699290-699309 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG + tig0014543:699291-699310 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG - tig0014543:699382-699401 Msa1355050:CDS 30.0%
AACTGCTTCAAATACAGTAT+CGG + tig0014543:699426-699445 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG - tig0014543:699470-699489 Msa1355050:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG - tig0014543:699479-699498 Msa1355050:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG - tig0014543:699481-699500 Msa1355050:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG - tig0014543:699572-699591 Msa1355050:intron 30.0%
ATTTCACTATATTTCTTCCC+AGG + tig0014543:699659-699678 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG - tig0014543:699734-699753 Msa1355050:intron 30.0%
ACATTAGGATTACTCGTTAA+TGG + tig0014543:699980-699999 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG - tig0014543:699979-699998 Msa1355050:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG - tig0014543:699980-699999 Msa1355050:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG - tig0014543:700069-700088 Msa1355050:CDS 30.0%
ATAGGATTCCATTCAACTCA+TGG - tig0014543:698780-698799 Msa1355050:CDS 35.0%
ATTCCATTCAACTCATGGTT+GGG - tig0014543:698785-698804 Msa1355050:CDS 35.0%
ATGGTTGGGAACTAATGATT+GGG - tig0014543:698799-698818 Msa1355050:CDS 35.0%
! GGGTCTGTCTATAAAGATTT+TGG - tig0014543:698819-698838 Msa1355050:CDS 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG - tig0014543:699301-699320 Msa1355050:CDS 35.0%
!! TATCCCATTTTTGCTCAACA+GGG - tig0014543:699302-699321 Msa1355050:CDS 35.0%
TAACCCTGTTGAGCAAAAAT+GGG + tig0014543:699308-699327 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG + tig0014543:699309-699328 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG + tig0014543:699376-699395 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG + tig0014543:699425-699444 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG - tig0014543:699494-699513 Msa1355050:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG - tig0014543:699517-699536 Msa1355050:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG - tig0014543:699518-699537 Msa1355050:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG - tig0014543:699529-699548 Msa1355050:intron 35.0%
ACTATATTTCTTCCCAGGAA+CGG + tig0014543:699654-699673 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG + tig0014543:699684-699703 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG - tig0014543:699735-699754 Msa1355050:intron 35.0%
GTTTATAATGCTACAGCAAC+AGG - tig0014543:699809-699828 Msa1355050:intron 35.0%
TGGATACGAAATAACGATAG+TGG - tig0014543:699865-699884 Msa1355050:intron 35.0%
!! AATAACGATAGTGGATGCAT+CGG - tig0014543:699874-699893 Msa1355050:intron 35.0%
ATAGGATTCCATTCAACTCA+TGG - tig0014543:698780-698799 Msa1355050:CDS 35.0%
ATTCCATTCAACTCATGGTT+GGG - tig0014543:698785-698804 Msa1355050:CDS 35.0%
ATGGTTGGGAACTAATGATT+GGG - tig0014543:698799-698818 Msa1355050:CDS 35.0%
! GGGTCTGTCTATAAAGATTT+TGG - tig0014543:698819-698838 Msa1355050:CDS 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG - tig0014543:699301-699320 Msa1355050:CDS 35.0%
!! TATCCCATTTTTGCTCAACA+GGG - tig0014543:699302-699321 Msa1355050:CDS 35.0%
TAACCCTGTTGAGCAAAAAT+GGG + tig0014543:699308-699327 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG + tig0014543:699309-699328 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG + tig0014543:699376-699395 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG + tig0014543:699425-699444 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG - tig0014543:699494-699513 Msa1355050:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG - tig0014543:699517-699536 Msa1355050:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG - tig0014543:699518-699537 Msa1355050:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG - tig0014543:699529-699548 Msa1355050:intron 35.0%
ACTATATTTCTTCCCAGGAA+CGG + tig0014543:699654-699673 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG + tig0014543:699684-699703 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG - tig0014543:699735-699754 Msa1355050:intron 35.0%
GTTTATAATGCTACAGCAAC+AGG - tig0014543:699809-699828 Msa1355050:intron 35.0%
TGGATACGAAATAACGATAG+TGG - tig0014543:699865-699884 Msa1355050:intron 35.0%
!! AATAACGATAGTGGATGCAT+CGG - tig0014543:699874-699893 Msa1355050:intron 35.0%
GGTTGTTCGTCTCTATCAAT+TGG + tig0014543:698578-698597 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG + tig0014543:698599-698618 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG - tig0014543:698784-698803 Msa1355050:CDS 40.0%
CATGGTTGGGAACTAATGAT+TGG - tig0014543:698798-698817 Msa1355050:CDS 40.0%
TGAGCAATACGGAAATGGAT+CGG + tig0014543:699244-699263 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG + tig0014543:699249-699268 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG + tig0014543:699392-699411 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG - tig0014543:699394-699413 Msa1355050:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG + tig0014543:699652-699671 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG + tig0014543:699653-699672 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG + tig0014543:699707-699726 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG + tig0014543:699708-699727 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG - tig0014543:699742-699761 Msa1355050:intron 40.0%
ATTATTACTCTTGCTCCCGT+CGG + tig0014543:699786-699805 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG - tig0014543:699908-699927 Msa1355050:intron 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG - tig0014543:699931-699950 Msa1355050:intron 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG - tig0014543:699932-699951 Msa1355050:intron 40.0%
! AATCCTAATGTGGGTGGATT+TGG - tig0014543:699989-700008 Msa1355050:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG + tig0014543:700046-700065 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG - tig0014543:700054-700073 Msa1355050:CDS 40.0%
GGTTGTTCGTCTCTATCAAT+TGG + tig0014543:698578-698597 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG + tig0014543:698599-698618 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG - tig0014543:698784-698803 Msa1355050:CDS 40.0%
CATGGTTGGGAACTAATGAT+TGG - tig0014543:698798-698817 Msa1355050:CDS 40.0%
TGAGCAATACGGAAATGGAT+CGG + tig0014543:699244-699263 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG + tig0014543:699249-699268 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG + tig0014543:699392-699411 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG - tig0014543:699394-699413 Msa1355050:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG + tig0014543:699652-699671 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG + tig0014543:699653-699672 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG + tig0014543:699707-699726 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG + tig0014543:699708-699727 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG - tig0014543:699742-699761 Msa1355050:intron 40.0%
ATTATTACTCTTGCTCCCGT+CGG + tig0014543:699786-699805 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG - tig0014543:699908-699927 Msa1355050:intron 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG - tig0014543:699931-699950 Msa1355050:intron 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG - tig0014543:699932-699951 Msa1355050:intron 40.0%
! AATCCTAATGTGGGTGGATT+TGG - tig0014543:699989-700008 Msa1355050:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG + tig0014543:700046-700065 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG - tig0014543:700054-700073 Msa1355050:CDS 40.0%
! GTTCCCAACCATGAGTTGAA+TGG + tig0014543:698791-698810 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG + tig0014543:699243-699262 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG - tig0014543:699329-699348 Msa1355050:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG - tig0014543:699330-699349 Msa1355050:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG + tig0014543:699351-699370 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG + tig0014543:699743-699762 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG - tig0014543:699741-699760 Msa1355050:intron 45.0%
ATATACGTAGGCGGGAATAG+GGG - tig0014543:699743-699762 Msa1355050:intron 45.0%
TTATTACTCTTGCTCCCGTC+GGG + tig0014543:699785-699804 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG + tig0014543:699929-699948 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG + tig0014543:699935-699954 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG - tig0014543:699983-700002 Msa1355050:CDS 45.0%
TGACCAAATCCACCCACATT+AGG + tig0014543:699995-700014 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG - tig0014543:699994-700013 Msa1355050:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG - tig0014543:699995-700014 Msa1355050:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG - tig0014543:700037-700056 Msa1355050:CDS 45.0%
! GTTCCCAACCATGAGTTGAA+TGG + tig0014543:698791-698810 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG + tig0014543:699243-699262 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG - tig0014543:699329-699348 Msa1355050:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG - tig0014543:699330-699349 Msa1355050:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG + tig0014543:699351-699370 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG + tig0014543:699743-699762 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG - tig0014543:699741-699760 Msa1355050:intron 45.0%
ATATACGTAGGCGGGAATAG+GGG - tig0014543:699743-699762 Msa1355050:intron 45.0%
TTATTACTCTTGCTCCCGTC+GGG + tig0014543:699785-699804 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG + tig0014543:699929-699948 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG + tig0014543:699935-699954 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG - tig0014543:699983-700002 Msa1355050:CDS 45.0%
TGACCAAATCCACCCACATT+AGG + tig0014543:699995-700014 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG - tig0014543:699994-700013 Msa1355050:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG - tig0014543:699995-700014 Msa1355050:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG - tig0014543:700037-700056 Msa1355050:CDS 45.0%
!!! AAAAAAACAAATTTTATAAT+TGG + tig0014543:699007-699026 None:intergenic 5.0%
!!! AAAAAAACAAATTTTATAAT+TGG + tig0014543:699007-699026 None:intergenic 5.0%
ATCTCGGGCGAAATACGATC+AGG + tig0014543:699560-699579 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG + tig0014543:699689-699708 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG + tig0014543:699701-699720 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG - tig0014543:699767-699786 Msa1355050:intron 50.0%
!! ACGATAGTGGATGCATCGGA+TGG - tig0014543:699878-699897 Msa1355050:intron 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG + tig0014543:699926-699945 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG - tig0014543:699996-700015 Msa1355050:CDS 50.0%
ATCTCGGGCGAAATACGATC+AGG + tig0014543:699560-699579 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG + tig0014543:699689-699708 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG + tig0014543:699701-699720 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG - tig0014543:699767-699786 Msa1355050:intron 50.0%
!! ACGATAGTGGATGCATCGGA+TGG - tig0014543:699878-699897 Msa1355050:intron 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG + tig0014543:699926-699945 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG - tig0014543:699996-700015 Msa1355050:CDS 50.0%
!! GTATCGGGAAGTACCGCTTG+TGG + tig0014543:699410-699429 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG + tig0014543:699536-699555 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG + tig0014543:699555-699574 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG + tig0014543:699556-699575 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG + tig0014543:699557-699576 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG - tig0014543:699768-699787 Msa1355050:intron 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG - tig0014543:699997-700016 Msa1355050:CDS 55.0%
!! GTATCGGGAAGTACCGCTTG+TGG + tig0014543:699410-699429 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG + tig0014543:699536-699555 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG + tig0014543:699555-699574 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG + tig0014543:699556-699575 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG + tig0014543:699557-699576 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG - tig0014543:699768-699787 Msa1355050:intron 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG - tig0014543:699997-700016 Msa1355050:CDS 55.0%
ATCCGAGAGAAGCTACCGGG+CGG - tig0014543:699333-699352 Msa1355050:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG + tig0014543:699338-699357 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG - tig0014543:699639-699658 Msa1355050:intron 60.0%
ACGTAGGCGGGAATAGGGGA+AGG - tig0014543:699747-699766 Msa1355050:intron 60.0%
CGTAGGCGGGAATAGGGGAA+GGG - tig0014543:699748-699767 Msa1355050:intron 60.0%
GTAGGCGGGAATAGGGGAAG+GGG - tig0014543:699749-699768 Msa1355050:intron 60.0%
ATCCGAGAGAAGCTACCGGG+CGG - tig0014543:699333-699352 Msa1355050:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG + tig0014543:699338-699357 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG - tig0014543:699639-699658 Msa1355050:intron 60.0%
ACGTAGGCGGGAATAGGGGA+AGG - tig0014543:699747-699766 Msa1355050:intron 60.0%
CGTAGGCGGGAATAGGGGAA+GGG - tig0014543:699748-699767 Msa1355050:intron 60.0%
GTAGGCGGGAATAGGGGAAG+GGG - tig0014543:699749-699768 Msa1355050:intron 60.0%
CTTGTGGTAGGCCCCGTTCC+TGG - tig0014543:699638-699657 Msa1355050:intron 65.0%
CTTGTGGTAGGCCCCGTTCC+TGG - tig0014543:699638-699657 Msa1355050:intron 65.0%
Chromosome Type Strat End Strand Name
tig0014543 gene 698552 700159 698552 ID=Msa1355050;Name=Msa1355050
tig0014543 mRNA 698552 700159 698552 ID=Msa1355050-mRNA-1;Parent=Msa1355050;Name=Msa1355050-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|0|0|2|0|389
tig0014543 exon 699979 700159 699979 ID=Msa1355050-mRNA-1:exon:9299;Parent=Msa1355050-mRNA-1
tig0014543 exon 698552 699540 698552 ID=Msa1355050-mRNA-1:exon:9298;Parent=Msa1355050-mRNA-1
tig0014543 CDS 699979 700159 699979 ID=Msa1355050-mRNA-1:cds;Parent=Msa1355050-mRNA-1
tig0014543 CDS 698552 699540 698552 ID=Msa1355050-mRNA-1:cds;Parent=Msa1355050-mRNA-1
Gene Sequence

>Msa1355050

ATGGAAATCTACAAAGAAAGCATCCAATTGATAGAGACGAACAACCAAGACCGTATCCATACGATTTTGCATTTCTGTACAAATATAATATGTTTCCTTATTCTAAGTGGTTATTCTATTAGGGGTAATCAAGAACTCATTATTCTTAACTCTTGGGTTCAAGAATTTCTATATAACTTAAAAATTTTCAGGATGAATGATTGGACCATGCAAACTAGAAATGCTTTTTCTTGGATAAAGGAAGAGATTACCCGATCCATTTCCGTATTGCTCATGATCTATATAATAACTCGAGCACCCATTTCAAATGCATATCCCATTTTTGCTCAACAGGGTTATGAAAATCCGAGAGAAGCTACCGGGCGGATTGTATGTGCTAATTGCCATTTAGCTAATAAGCCTGTAGATATTGAGGTTCCACAAGCGGTACTTCCCGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAAGTTAAACAAGTTCTTGCTAATGGTAAAAAAGGGGCTTTGAATGTAGGTGCTGTTCTTATTTTACCAGAGGGTTTTGAATTGGCCCCTCCTGATCGTATTTCGCCCGAGATTAAAGAAAAAATAGGTAATTTGTCTTTTCAAAGCTATCGTCCCACAAAAAAAAATATTCTTGTGGTAGGCCCCGTTCCTGGGAAGAAATATAGTGAAATTACCTTTCCTATTCTTTCTCCAGATCCCGCTACTAAGAGAGATGTTCACTTCTTAAAATATCCTATATACGTAGGCGGGAATAGGGGAAGGGGTCAGATTTATCCCGACGGGAGCAAGAGTAATAATAATGTTTATAATGCTACAGCAACAGGTATAGTAAATAAAATTATACGAAAAGAAAAAGGTGGATACGAAATAACGATAGTGGATGCATCGGATGGACGTGAAGTGATTGATATTATACCGCCAGGACCAGAACTTCTTGTTTCAGAGGGTGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGTGGATTTGGTCAGGGGGATGCAGAAATAGTGCTTCAAGATCCGTTACGTGTACAAGGTCTGTTGTTCTTCTTGGCATCTATTATTTTGGCACAAATCTTTTTGGTTCTTAAAAAGAAACAATTTGAAAAGGTTCAATTGTCCGAAATGAATTTTTAG

Protein sequence

>Msa1355050

MEIYKESIQLIETNNQDRIHTILHFCTNIICFLILSGYSIRGNQELIILNSWVQEFLYNLKIFRMNDWTMQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQVKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEIKEKIGNLSFQSYRPTKKNILVVGPVPGKKYSEITFPILSPDPATKRDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATATGIVNKIIRKEKGGYEITIVDASDGREVIDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASIILAQIFLVLKKKQFEKVQLSEMNF*