AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1380570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1380570 MtrunA17_CPg0492851 99.692 325 1 0 65 389 1 325 0.0 659
Msa1380570 MtrunA17_Chr4g0015731 99.692 325 1 0 65 389 1 325 0.0 659
Msa1380570 MtrunA17_Chr4g0016821 99.692 325 1 0 65 389 1 325 0.0 659
Msa1380570 MtrunA17_Chr4g0016981 83.186 113 4 1 108 220 42 139 2.08e-58 187
Msa1380570 MtrunA17_Chr4g0016991 95.385 65 3 0 325 389 1 65 4.08e-36 126
Msa1380570 MtrunA17_Chr5g0403621 96.667 60 2 0 1 60 86 145 4.59e-35 127
Msa1380570 MtrunA17_Chr4g0016811 98.333 60 1 0 1 60 95 154 2.12e-34 127
Msa1380570 MtrunA17_CPg0492871 98.333 60 1 0 1 60 86 145 2.37e-34 127
Msa1380570 MtrunA17_Chr4g0015721 98.333 60 1 0 1 60 86 145 2.37e-34 127
Msa1380570 MtrunA17_Chr3g0141111 94.737 57 3 0 1 57 15 71 3.31e-33 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1380570 ATCG00540.1 90.625 320 30 0 70 389 1 320 0.0 595
Msa1380570 ATCG00530.1 67.241 58 19 0 3 60 88 145 2.46e-18 83.6

Find 87 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTGGCATCTATTATTT+TGG 0.108321 tig0020386:-10476 Msa1380570:CDS
TTCTAAGTGGTTATTCTATT+AGG 0.170612 tig0020386:-11893 Msa1380570:CDS
ACAAGGTCTGTTGTTCTTCT+TGG 0.210830 tig0020386:-10491 Msa1380570:CDS
TCTAAGTGGTTATTCTATTA+GGG 0.213858 tig0020386:-11892 Msa1380570:CDS
CTTGTGGTAGGCCCCGTTCC+TGG 0.214230 tig0020386:-10907 Msa1380570:CDS
ACATTAGGATTACTCGTTAA+TGG 0.226644 tig0020386:+10568 None:intergenic
TAGAATAACCACTTAGAATA+AGG 0.296044 tig0020386:+11898 None:intergenic
CTACAGGCTTATTAGCTAAA+TGG 0.299374 tig0020386:+11172 None:intergenic
CTATATACGTAGGCGGGAAT+AGG 0.308836 tig0020386:-10804 Msa1380570:CDS
CTATATTTCTTCCCAGGAAC+GGG 0.314257 tig0020386:+10895 None:intergenic
AATCCTAATGTGGGTGGATT+TGG 0.318985 tig0020386:-10556 Msa1380570:CDS
AACTCATTATTCTTAACTCT+TGG 0.323937 tig0020386:-11860 Msa1380570:CDS
AAAATTATACGAAAAGAAAA+AGG 0.339453 tig0020386:-10703 Msa1380570:CDS
TATATACGTAGGCGGGAATA+GGG 0.340058 tig0020386:-10803 Msa1380570:CDS
CTATTCCCGCCTACGTATAT+AGG 0.341092 tig0020386:+10805 None:intergenic
GTTAAACAAGTTCTTGCTAA+TGG 0.346567 tig0020386:-11075 Msa1380570:CDS
GGTTGTTCGTCTCTATCAAT+TGG 0.367131 tig0020386:+11970 None:intergenic
CCCTCTGAAACAAGAAGTTC+TGG 0.373836 tig0020386:+10613 None:intergenic
TAATGTGGGTGGATTTGGTC+AGG 0.386047 tig0020386:-10551 Msa1380570:CDS
TGACCAAATCCACCCACATT+AGG 0.412065 tig0020386:+10553 None:intergenic
TGTTTAACTTGCATATCATA+AGG 0.412925 tig0020386:+11090 None:intergenic
ACTCATTATTCTTAACTCTT+GGG 0.414290 tig0020386:-11859 Msa1380570:CDS
TCTCTCTTAGTAGCGGGATC+TGG 0.425976 tig0020386:+10847 None:intergenic
AATGGGATATGCATTTGAAA+TGG 0.432612 tig0020386:+11257 None:intergenic
GTTTATAATGCTACAGCAAC+AGG 0.436701 tig0020386:-10736 Msa1380570:CDS
GATCATGAGCAATACGGAAA+TGG 0.442149 tig0020386:+11299 None:intergenic
AAATCGTATGGATACGGTCT+TGG 0.446811 tig0020386:+11949 None:intergenic
TTGTGGTAGGCCCCGTTCCT+GGG 0.450790 tig0020386:-10906 Msa1380570:CDS
TTATTACTCTTGCTCCCGTC+GGG 0.465288 tig0020386:+10763 None:intergenic
ATATGTTTCCTTATTCTAAG+TGG 0.468100 tig0020386:-11906 Msa1380570:CDS
TACAGAAATGCAAAATCGTA+TGG 0.481344 tig0020386:+11937 None:intergenic
ACTGCTTCAAATACAGTATC+GGG 0.488265 tig0020386:+11123 None:intergenic
AAAAGCATTTCTAGTTTGCA+TGG 0.489913 tig0020386:+11350 None:intergenic
TGGATACGAAATAACGATAG+TGG 0.491690 tig0020386:-10680 Msa1380570:CDS
AACTGCTTCAAATACAGTAT+CGG 0.494328 tig0020386:+11122 None:intergenic
ATTTCACTATATTTCTTCCC+AGG 0.497196 tig0020386:+10889 None:intergenic
ATGGGATATGCATTTGAAAT+GGG 0.502392 tig0020386:+11258 None:intergenic
GAGCAATACGGAAATGGATC+GGG 0.505456 tig0020386:+11305 None:intergenic
CAAGATCCGTTACGTGTACA+AGG 0.506414 tig0020386:-10508 Msa1380570:CDS
TATATAGATCATGAGCAATA+CGG 0.512581 tig0020386:+11293 None:intergenic
ATCCGCCCGGTAGCTTCTCT+CGG 0.516777 tig0020386:+11210 None:intergenic
AATATCCTATATACGTAGGC+GGG 0.517081 tig0020386:-10810 Msa1380570:CDS
TAATAAGCCTGTAGATATTG+AGG 0.521759 tig0020386:-11163 Msa1380570:CDS
ATGTGGGTGGATTTGGTCAG+GGG 0.523100 tig0020386:-10549 Msa1380570:CDS
TGTGGAACCTCAATATCTAC+AGG 0.524236 tig0020386:+11156 None:intergenic
ATTATTACTCTTGCTCCCGT+CGG 0.527873 tig0020386:+10762 None:intergenic
CCAGAACTTCTTGTTTCAGA+GGG 0.530598 tig0020386:-10613 Msa1380570:CDS
ACTATATTTCTTCCCAGGAA+CGG 0.533921 tig0020386:+10894 None:intergenic
AATGTGGGTGGATTTGGTCA+GGG 0.534197 tig0020386:-10550 Msa1380570:CDS
ATCTCGGGCGAAATACGATC+AGG 0.534200 tig0020386:+10988 None:intergenic
CTAAGTGGTTATTCTATTAG+GGG 0.545375 tig0020386:-11891 Msa1380570:CDS
GAAACAAGAAGTTCTGGTCC+TGG 0.545439 tig0020386:+10619 None:intergenic
GCGGGATCTGGAGAAAGAAT+AGG 0.547213 tig0020386:+10859 None:intergenic
GTAGGCGGGAATAGGGGAAG+GGG 0.547797 tig0020386:-10796 Msa1380570:CDS
AATGCAAAATCGTATGGATA+CGG 0.548969 tig0020386:+11943 None:intergenic
GTGAACATCTCTCTTAGTAG+CGG 0.549431 tig0020386:+10840 None:intergenic
ACCAGAACTTCTTGTTTCAG+AGG 0.553828 tig0020386:-10614 Msa1380570:CDS
AAAATCCGAGAGAAGCTACC+GGG 0.554646 tig0020386:-11215 Msa1380570:CDS
TGAGCAATACGGAAATGGAT+CGG 0.555873 tig0020386:+11304 None:intergenic
GTGATTGATATTATACCGCC+AGG 0.566218 tig0020386:-10637 Msa1380570:CDS
TGAACATCTCTCTTAGTAGC+GGG 0.566429 tig0020386:+10841 None:intergenic
ATTAACGAGTAATCCTAATG+TGG 0.573726 tig0020386:-10566 Msa1380570:CDS
GGGGCCAATTCAAAACCCTC+TGG 0.574508 tig0020386:+11012 None:intergenic
GGGGTCAGATTTATCCCGAC+GGG 0.575656 tig0020386:-10777 Msa1380570:CDS
ACGTAGGCGGGAATAGGGGA+AGG 0.589088 tig0020386:-10798 Msa1380570:CDS
ACGATAGTGGATGCATCGGA+TGG 0.592008 tig0020386:-10667 Msa1380570:CDS
ATCTGGAGAAAGAATAGGAA+AGG 0.599901 tig0020386:+10864 None:intergenic
AACAGACCTTGTACACGTAA+CGG 0.600684 tig0020386:+10502 None:intergenic
GAAAATCCGAGAGAAGCTAC+CGG 0.606144 tig0020386:-11216 Msa1380570:CDS
TGTGGGTGGATTTGGTCAGG+GGG 0.611690 tig0020386:-10548 Msa1380570:CDS
AAATATCCTATATACGTAGG+CGG 0.616381 tig0020386:-10811 Msa1380570:CDS
TTAAAATATCCTATATACGT+AGG 0.623794 tig0020386:-10814 Msa1380570:CDS
ACGAGTAATCCTAATGTGGG+TGG 0.626177 tig0020386:-10562 Msa1380570:CDS
TCGGGCGAAATACGATCAGG+AGG 0.629985 tig0020386:+10991 None:intergenic
ATTAGCACATACAATCCGCC+CGG 0.633238 tig0020386:+11197 None:intergenic
AATAACGATAGTGGATGCAT+CGG 0.634066 tig0020386:-10671 Msa1380570:CDS
TATATTTCTTCCCAGGAACG+GGG 0.637585 tig0020386:+10896 None:intergenic
ATATACGTAGGCGGGAATAG+GGG 0.641009 tig0020386:-10802 Msa1380570:CDS
CGTAGGCGGGAATAGGGGAA+GGG 0.650670 tig0020386:-10797 Msa1380570:CDS
TTAACGAGTAATCCTAATGT+GGG 0.652400 tig0020386:-10565 Msa1380570:CDS
AGATATTGAGGTTCCACAAG+CGG 0.653295 tig0020386:-11151 Msa1380570:CDS
CGGGCGAAATACGATCAGGA+GGG 0.656521 tig0020386:+10992 None:intergenic
GGGCGAAATACGATCAGGAG+GGG 0.658846 tig0020386:+10993 None:intergenic
AGGGGTCAGATTTATCCCGA+CGG 0.672516 tig0020386:-10778 Msa1380570:CDS
GTATCGGGAAGTACCGCTTG+TGG 0.687149 tig0020386:+11138 None:intergenic
ACAAGAAGTTCTGGTCCTGG+CGG 0.692543 tig0020386:+10622 None:intergenic
ATCCGAGAGAAGCTACCGGG+CGG 0.767274 tig0020386:-11212 Msa1380570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATAAATCAGTTAATAAA+AGG + tig0020386:10617-10636 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG - tig0020386:10618-10637 Msa1380570:CDS 15.0%
!!! TAGATACAATTTTAAAATAC+TGG - tig0020386:10754-10773 Msa1380570:CDS 15.0%
!! AAAATTTCTACAATAAGATT+AGG + tig0020386:11014-11033 None:intergenic 15.0%
!!! ACAAGAATATTTTTTTTTGT+GGG + tig0020386:11479-11498 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG - tig0020386:11698-11717 Msa1380570:intron 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG - tig0020386:11967-11986 Msa1380570:CDS 15.0%
!! TACATAAATCAGTTAATAAA+AGG + tig0020386:10617-10636 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG - tig0020386:10618-10637 Msa1380570:CDS 15.0%
!!! TAGATACAATTTTAAAATAC+TGG - tig0020386:10754-10773 Msa1380570:CDS 15.0%
!! AAAATTTCTACAATAAGATT+AGG + tig0020386:11014-11033 None:intergenic 15.0%
!!! ACAAGAATATTTTTTTTTGT+GGG + tig0020386:11479-11498 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG - tig0020386:11698-11717 Msa1380570:intron 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG - tig0020386:11967-11986 Msa1380570:CDS 15.0%
!!! AAAATTGTATCTAAAATGAC+TGG + tig0020386:10747-10766 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG + tig0020386:10855-10874 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG + tig0020386:10946-10965 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG - tig0020386:11015-11034 Msa1380570:CDS 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG + tig0020386:11432-11451 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG + tig0020386:11480-11499 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG - tig0020386:11478-11497 Msa1380570:intron 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG - tig0020386:11482-11501 Msa1380570:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG - tig0020386:11587-11606 Msa1380570:intron 20.0%
!!! AAAATTGTATCTAAAATGAC+TGG + tig0020386:10747-10766 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG + tig0020386:10855-10874 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG + tig0020386:10946-10965 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG - tig0020386:11015-11034 Msa1380570:CDS 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG + tig0020386:11432-11451 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG + tig0020386:11480-11499 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG - tig0020386:11478-11497 Msa1380570:intron 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG - tig0020386:11482-11501 Msa1380570:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG - tig0020386:11587-11606 Msa1380570:intron 20.0%
! ATATGTTTCCTTATTCTAAG+TGG - tig0020386:10495-10514 Msa1380570:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG + tig0020386:10506-10525 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG - tig0020386:10508-10527 Msa1380570:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG - tig0020386:10509-10528 Msa1380570:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG - tig0020386:10541-10560 Msa1380570:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG - tig0020386:10542-10561 Msa1380570:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG - tig0020386:10705-10724 Msa1380570:CDS 25.0%
! GAGATACACGATTTAAATAA+CGG + tig0020386:10785-10804 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG - tig0020386:10964-10983 Msa1380570:CDS 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG - tig0020386:10969-10988 Msa1380570:CDS 25.0%
!!! AAATAGCAGAATAATGGATA+GGG - tig0020386:10970-10989 Msa1380570:CDS 25.0%
! TTTCTACAATAAGATTAGGT+AGG + tig0020386:11010-11029 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG - tig0020386:11027-11046 Msa1380570:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG - tig0020386:11057-11076 Msa1380570:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG - tig0020386:11064-11083 Msa1380570:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG + tig0020386:11111-11130 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG + tig0020386:11314-11333 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG - tig0020386:11336-11355 Msa1380570:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG + tig0020386:11431-11450 None:intergenic 25.0%
! ATTATACGAAAAGAAAAAGG+TGG - tig0020386:11701-11720 Msa1380570:intron 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG - tig0020386:11940-11959 Msa1380570:CDS 25.0%
! ATATGTTTCCTTATTCTAAG+TGG - tig0020386:10495-10514 Msa1380570:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG + tig0020386:10506-10525 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG - tig0020386:10508-10527 Msa1380570:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG - tig0020386:10509-10528 Msa1380570:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG - tig0020386:10541-10560 Msa1380570:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG - tig0020386:10542-10561 Msa1380570:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG - tig0020386:10705-10724 Msa1380570:CDS 25.0%
! GAGATACACGATTTAAATAA+CGG + tig0020386:10785-10804 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG - tig0020386:10964-10983 Msa1380570:CDS 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG - tig0020386:10969-10988 Msa1380570:CDS 25.0%
!!! AAATAGCAGAATAATGGATA+GGG - tig0020386:10970-10989 Msa1380570:CDS 25.0%
! TTTCTACAATAAGATTAGGT+AGG + tig0020386:11010-11029 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG - tig0020386:11027-11046 Msa1380570:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG - tig0020386:11057-11076 Msa1380570:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG - tig0020386:11064-11083 Msa1380570:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG + tig0020386:11111-11130 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG + tig0020386:11314-11333 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG - tig0020386:11336-11355 Msa1380570:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG + tig0020386:11431-11450 None:intergenic 25.0%
! ATTATACGAAAAGAAAAAGG+TGG - tig0020386:11701-11720 Msa1380570:intron 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG - tig0020386:11940-11959 Msa1380570:CDS 25.0%
AATGCAAAATCGTATGGATA+CGG + tig0020386:10461-10480 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG + tig0020386:10467-10486 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG - tig0020386:10510-10529 Msa1380570:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG + tig0020386:10739-10758 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG + tig0020386:10807-10826 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG - tig0020386:10933-10952 Msa1380570:CDS 30.0%
AATAAGATTAGGTAGGTTAC+TGG + tig0020386:11003-11022 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG + tig0020386:11054-11073 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG + tig0020386:11146-11165 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG + tig0020386:11147-11166 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG - tig0020386:11238-11257 Msa1380570:CDS 30.0%
AACTGCTTCAAATACAGTAT+CGG + tig0020386:11282-11301 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG - tig0020386:11326-11345 Msa1380570:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG - tig0020386:11335-11354 Msa1380570:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG - tig0020386:11337-11356 Msa1380570:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG - tig0020386:11428-11447 Msa1380570:intron 30.0%
ATTTCACTATATTTCTTCCC+AGG + tig0020386:11515-11534 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG - tig0020386:11590-11609 Msa1380570:intron 30.0%
ACATTAGGATTACTCGTTAA+TGG + tig0020386:11836-11855 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG - tig0020386:11835-11854 Msa1380570:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG - tig0020386:11836-11855 Msa1380570:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG - tig0020386:11925-11944 Msa1380570:CDS 30.0%
AATGCAAAATCGTATGGATA+CGG + tig0020386:10461-10480 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG + tig0020386:10467-10486 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG - tig0020386:10510-10529 Msa1380570:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG + tig0020386:10739-10758 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG + tig0020386:10807-10826 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG - tig0020386:10933-10952 Msa1380570:CDS 30.0%
AATAAGATTAGGTAGGTTAC+TGG + tig0020386:11003-11022 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG + tig0020386:11054-11073 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG + tig0020386:11146-11165 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG + tig0020386:11147-11166 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG - tig0020386:11238-11257 Msa1380570:CDS 30.0%
AACTGCTTCAAATACAGTAT+CGG + tig0020386:11282-11301 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG - tig0020386:11326-11345 Msa1380570:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG - tig0020386:11335-11354 Msa1380570:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG - tig0020386:11337-11356 Msa1380570:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG - tig0020386:11428-11447 Msa1380570:intron 30.0%
ATTTCACTATATTTCTTCCC+AGG + tig0020386:11515-11534 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG - tig0020386:11590-11609 Msa1380570:intron 30.0%
ACATTAGGATTACTCGTTAA+TGG + tig0020386:11836-11855 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG - tig0020386:11835-11854 Msa1380570:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG - tig0020386:11836-11855 Msa1380570:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG - tig0020386:11925-11944 Msa1380570:CDS 30.0%
ATAGGATTCCATTCAACTCA+TGG - tig0020386:10636-10655 Msa1380570:CDS 35.0%
ATTCCATTCAACTCATGGTT+GGG - tig0020386:10641-10660 Msa1380570:CDS 35.0%
ATGGTTGGGAACTAATGATT+GGG - tig0020386:10655-10674 Msa1380570:CDS 35.0%
! GGGTCTGTCTATAAAGATTT+TGG - tig0020386:10675-10694 Msa1380570:CDS 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG - tig0020386:11157-11176 Msa1380570:CDS 35.0%
!! TATCCCATTTTTGCTCAACA+GGG - tig0020386:11158-11177 Msa1380570:CDS 35.0%
TAACCCTGTTGAGCAAAAAT+GGG + tig0020386:11164-11183 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG + tig0020386:11165-11184 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG + tig0020386:11232-11251 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG + tig0020386:11281-11300 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG - tig0020386:11350-11369 Msa1380570:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG - tig0020386:11373-11392 Msa1380570:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG - tig0020386:11374-11393 Msa1380570:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG - tig0020386:11385-11404 Msa1380570:intron 35.0%
ACTATATTTCTTCCCAGGAA+CGG + tig0020386:11510-11529 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG + tig0020386:11540-11559 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG - tig0020386:11591-11610 Msa1380570:intron 35.0%
GTTTATAATGCTACAGCAAC+AGG - tig0020386:11665-11684 Msa1380570:intron 35.0%
TGGATACGAAATAACGATAG+TGG - tig0020386:11721-11740 Msa1380570:intron 35.0%
!! AATAACGATAGTGGATGCAT+CGG - tig0020386:11730-11749 Msa1380570:intron 35.0%
ATAGGATTCCATTCAACTCA+TGG - tig0020386:10636-10655 Msa1380570:CDS 35.0%
ATTCCATTCAACTCATGGTT+GGG - tig0020386:10641-10660 Msa1380570:CDS 35.0%
ATGGTTGGGAACTAATGATT+GGG - tig0020386:10655-10674 Msa1380570:CDS 35.0%
! GGGTCTGTCTATAAAGATTT+TGG - tig0020386:10675-10694 Msa1380570:CDS 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG - tig0020386:11157-11176 Msa1380570:CDS 35.0%
!! TATCCCATTTTTGCTCAACA+GGG - tig0020386:11158-11177 Msa1380570:CDS 35.0%
TAACCCTGTTGAGCAAAAAT+GGG + tig0020386:11164-11183 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG + tig0020386:11165-11184 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG + tig0020386:11232-11251 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG + tig0020386:11281-11300 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG - tig0020386:11350-11369 Msa1380570:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG - tig0020386:11373-11392 Msa1380570:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG - tig0020386:11374-11393 Msa1380570:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG - tig0020386:11385-11404 Msa1380570:intron 35.0%
ACTATATTTCTTCCCAGGAA+CGG + tig0020386:11510-11529 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG + tig0020386:11540-11559 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG - tig0020386:11591-11610 Msa1380570:intron 35.0%
GTTTATAATGCTACAGCAAC+AGG - tig0020386:11665-11684 Msa1380570:intron 35.0%
TGGATACGAAATAACGATAG+TGG - tig0020386:11721-11740 Msa1380570:intron 35.0%
!! AATAACGATAGTGGATGCAT+CGG - tig0020386:11730-11749 Msa1380570:intron 35.0%
GGTTGTTCGTCTCTATCAAT+TGG + tig0020386:10434-10453 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG + tig0020386:10455-10474 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG - tig0020386:10640-10659 Msa1380570:CDS 40.0%
CATGGTTGGGAACTAATGAT+TGG - tig0020386:10654-10673 Msa1380570:CDS 40.0%
TGAGCAATACGGAAATGGAT+CGG + tig0020386:11100-11119 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG + tig0020386:11105-11124 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG + tig0020386:11248-11267 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG - tig0020386:11250-11269 Msa1380570:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG + tig0020386:11508-11527 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG + tig0020386:11509-11528 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG + tig0020386:11563-11582 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG + tig0020386:11564-11583 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG - tig0020386:11598-11617 Msa1380570:intron 40.0%
ATTATTACTCTTGCTCCCGT+CGG + tig0020386:11642-11661 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG - tig0020386:11764-11783 Msa1380570:intron 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG - tig0020386:11787-11806 Msa1380570:intron 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG - tig0020386:11788-11807 Msa1380570:intron 40.0%
! AATCCTAATGTGGGTGGATT+TGG - tig0020386:11845-11864 Msa1380570:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG + tig0020386:11902-11921 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG - tig0020386:11910-11929 Msa1380570:CDS 40.0%
GGTTGTTCGTCTCTATCAAT+TGG + tig0020386:10434-10453 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG + tig0020386:10455-10474 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG - tig0020386:10640-10659 Msa1380570:CDS 40.0%
CATGGTTGGGAACTAATGAT+TGG - tig0020386:10654-10673 Msa1380570:CDS 40.0%
TGAGCAATACGGAAATGGAT+CGG + tig0020386:11100-11119 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG + tig0020386:11105-11124 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG + tig0020386:11248-11267 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG - tig0020386:11250-11269 Msa1380570:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG + tig0020386:11508-11527 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG + tig0020386:11509-11528 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG + tig0020386:11563-11582 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG + tig0020386:11564-11583 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG - tig0020386:11598-11617 Msa1380570:intron 40.0%
ATTATTACTCTTGCTCCCGT+CGG + tig0020386:11642-11661 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG - tig0020386:11764-11783 Msa1380570:intron 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG - tig0020386:11787-11806 Msa1380570:intron 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG - tig0020386:11788-11807 Msa1380570:intron 40.0%
! AATCCTAATGTGGGTGGATT+TGG - tig0020386:11845-11864 Msa1380570:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG + tig0020386:11902-11921 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG - tig0020386:11910-11929 Msa1380570:CDS 40.0%
! GTTCCCAACCATGAGTTGAA+TGG + tig0020386:10647-10666 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG + tig0020386:11099-11118 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG - tig0020386:11185-11204 Msa1380570:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG - tig0020386:11186-11205 Msa1380570:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG + tig0020386:11207-11226 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG + tig0020386:11599-11618 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG - tig0020386:11597-11616 Msa1380570:intron 45.0%
ATATACGTAGGCGGGAATAG+GGG - tig0020386:11599-11618 Msa1380570:intron 45.0%
TTATTACTCTTGCTCCCGTC+GGG + tig0020386:11641-11660 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG + tig0020386:11785-11804 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG + tig0020386:11791-11810 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG - tig0020386:11839-11858 Msa1380570:CDS 45.0%
TGACCAAATCCACCCACATT+AGG + tig0020386:11851-11870 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG - tig0020386:11850-11869 Msa1380570:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG - tig0020386:11851-11870 Msa1380570:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG - tig0020386:11893-11912 Msa1380570:CDS 45.0%
! GTTCCCAACCATGAGTTGAA+TGG + tig0020386:10647-10666 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG + tig0020386:11099-11118 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG - tig0020386:11185-11204 Msa1380570:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG - tig0020386:11186-11205 Msa1380570:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG + tig0020386:11207-11226 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG + tig0020386:11599-11618 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG - tig0020386:11597-11616 Msa1380570:intron 45.0%
ATATACGTAGGCGGGAATAG+GGG - tig0020386:11599-11618 Msa1380570:intron 45.0%
TTATTACTCTTGCTCCCGTC+GGG + tig0020386:11641-11660 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG + tig0020386:11785-11804 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG + tig0020386:11791-11810 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG - tig0020386:11839-11858 Msa1380570:CDS 45.0%
TGACCAAATCCACCCACATT+AGG + tig0020386:11851-11870 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG - tig0020386:11850-11869 Msa1380570:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG - tig0020386:11851-11870 Msa1380570:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG - tig0020386:11893-11912 Msa1380570:CDS 45.0%
!!! AAAAAAACAAATTTTATAAT+TGG + tig0020386:10863-10882 None:intergenic 5.0%
!!! AAAAAAACAAATTTTATAAT+TGG + tig0020386:10863-10882 None:intergenic 5.0%
ATCTCGGGCGAAATACGATC+AGG + tig0020386:11416-11435 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG + tig0020386:11545-11564 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG + tig0020386:11557-11576 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG - tig0020386:11623-11642 Msa1380570:intron 50.0%
!! ACGATAGTGGATGCATCGGA+TGG - tig0020386:11734-11753 Msa1380570:intron 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG + tig0020386:11782-11801 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG - tig0020386:11852-11871 Msa1380570:CDS 50.0%
ATCTCGGGCGAAATACGATC+AGG + tig0020386:11416-11435 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG + tig0020386:11545-11564 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG + tig0020386:11557-11576 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG - tig0020386:11623-11642 Msa1380570:intron 50.0%
!! ACGATAGTGGATGCATCGGA+TGG - tig0020386:11734-11753 Msa1380570:intron 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG + tig0020386:11782-11801 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG - tig0020386:11852-11871 Msa1380570:CDS 50.0%
!! GTATCGGGAAGTACCGCTTG+TGG + tig0020386:11266-11285 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG + tig0020386:11392-11411 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG + tig0020386:11411-11430 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG + tig0020386:11412-11431 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG + tig0020386:11413-11432 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG - tig0020386:11624-11643 Msa1380570:intron 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG - tig0020386:11853-11872 Msa1380570:CDS 55.0%
!! GTATCGGGAAGTACCGCTTG+TGG + tig0020386:11266-11285 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG + tig0020386:11392-11411 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG + tig0020386:11411-11430 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG + tig0020386:11412-11431 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG + tig0020386:11413-11432 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG - tig0020386:11624-11643 Msa1380570:intron 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG - tig0020386:11853-11872 Msa1380570:CDS 55.0%
ATCCGAGAGAAGCTACCGGG+CGG - tig0020386:11189-11208 Msa1380570:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG + tig0020386:11194-11213 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG - tig0020386:11495-11514 Msa1380570:intron 60.0%
ACGTAGGCGGGAATAGGGGA+AGG - tig0020386:11603-11622 Msa1380570:intron 60.0%
CGTAGGCGGGAATAGGGGAA+GGG - tig0020386:11604-11623 Msa1380570:intron 60.0%
GTAGGCGGGAATAGGGGAAG+GGG - tig0020386:11605-11624 Msa1380570:intron 60.0%
ATCCGAGAGAAGCTACCGGG+CGG - tig0020386:11189-11208 Msa1380570:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG + tig0020386:11194-11213 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG - tig0020386:11495-11514 Msa1380570:intron 60.0%
ACGTAGGCGGGAATAGGGGA+AGG - tig0020386:11603-11622 Msa1380570:intron 60.0%
CGTAGGCGGGAATAGGGGAA+GGG - tig0020386:11604-11623 Msa1380570:intron 60.0%
GTAGGCGGGAATAGGGGAAG+GGG - tig0020386:11605-11624 Msa1380570:intron 60.0%
CTTGTGGTAGGCCCCGTTCC+TGG - tig0020386:11494-11513 Msa1380570:intron 65.0%
CTTGTGGTAGGCCCCGTTCC+TGG - tig0020386:11494-11513 Msa1380570:intron 65.0%
Chromosome Type Strat End Strand Name
tig0020386 gene 10408 12015 10408 ID=Msa1380570;Name=Msa1380570
tig0020386 mRNA 10408 12015 10408 ID=Msa1380570-mRNA-1;Parent=Msa1380570;Name=Msa1380570-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|0|0|2|0|389
tig0020386 exon 11835 12015 11835 ID=Msa1380570-mRNA-1:exon:7197;Parent=Msa1380570-mRNA-1
tig0020386 exon 10408 11396 10408 ID=Msa1380570-mRNA-1:exon:7196;Parent=Msa1380570-mRNA-1
tig0020386 CDS 11835 12015 11835 ID=Msa1380570-mRNA-1:cds;Parent=Msa1380570-mRNA-1
tig0020386 CDS 10408 11396 10408 ID=Msa1380570-mRNA-1:cds;Parent=Msa1380570-mRNA-1
Gene Sequence

>Msa1380570

ATGGAAATCTACAAAGAAAGCATCCAATTGATAGAGACGAACAACCAAGACCGTATCCATACGATTTTGCATTTCTGTACAAATATAATATGTTTCCTTATTCTAAGTGGTTATTCTATTAGGGGTAATCAAGAACTCATTATTCTTAACTCTTGGGTTCAAGAATTTCTATATAACTTAAAAATTTTCAGGATGAATGATTGGACCATGCAAACTAGAAATGCTTTTTCTTGGATAAAGGAAGAGATTACCCGATCCATTTCCGTATTGCTCATGATCTATATAATAACTCGAGCACCCATTTCAAATGCATATCCCATTTTTGCTCAACAGGGTTATGAAAATCCGAGAGAAGCTACCGGGCGGATTGTATGTGCTAATTGCCATTTAGCTAATAAGCCTGTAGATATTGAGGTTCCACAAGCGGTACTTCCCGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAAGTTAAACAAGTTCTTGCTAATGGTAAAAAAGGGGCTTTGAATGTAGGTGCTGTTCTTATTTTACCAGAGGGTTTTGAATTGGCCCCTCCTGATCGTATTTCGCCCGAGATTAAAGAAAAAATAGGTAATTTGTCTTTTCAAAGCTATCGTCCCACAAAAAAAAATATTCTTGTGGTAGGCCCCGTTCCTGGGAAGAAATATAGTGAAATTACCTTTCCTATTCTTTCTCCAGATCCCGCTACTAAGAGAGATGTTCACTTCTTAAAATATCCTATATACGTAGGCGGGAATAGGGGAAGGGGTCAGATTTATCCCGACGGGAGCAAGAGTAATAATAATGTTTATAATGCTACAGCAACAGGTATAGTAAATAAAATTATACGAAAAGAAAAAGGTGGATACGAAATAACGATAGTGGATGCATCGGATGGACGTGAAGTGATTGATATTATACCGCCAGGACCAGAACTTCTTGTTTCAGAGGGTGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGTGGATTTGGTCAGGGGGATGCAGAAATAGTGCTTCAAGATCCGTTACGTGTACAAGGTCTGTTGTTCTTCTTGGCATCTATTATTTTGGCACAAATCTTTTTGGTTCTTAAAAAGAAACAATTTGAAAAGGTTCAATTGTCCGAAATGAATTTTTAG

Protein sequence

>Msa1380570

MEIYKESIQLIETNNQDRIHTILHFCTNIICFLILSGYSIRGNQELIILNSWVQEFLYNLKIFRMNDWTMQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQVKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEIKEKIGNLSFQSYRPTKKNILVVGPVPGKKYSEITFPILSPDPATKRDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATATGIVNKIIRKEKGGYEITIVDASDGREVIDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASIILAQIFLVLKKKQFEKVQLSEMNF*