AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0931110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0931110 MtrunA17_CPg0492851 84.227 317 31 1 1 298 1 317 0.0 521
Msa0931110 MtrunA17_Chr4g0015731 84.227 317 31 1 1 298 1 317 0.0 521
Msa0931110 MtrunA17_Chr4g0016821 84.227 317 31 1 1 298 1 317 0.0 521
Msa0931110 MtrunA17_Chr4g0016981 78.667 75 1 1 63 137 80 139 1.95e-30 112
Msa0931110 MtrunA17_Chr4g0016991 75.439 57 14 0 242 298 1 57 7.87e-24 92.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0931110 ATCG00540.1 75.321 312 58 1 6 298 1 312 3.68e-165 462

Find 73 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCTTGGCATCTATTATT+TGG 0.163751 6_2:+80332081 Msa0931110:CDS
CATAACCCTGTTGAGCAAAA+TGG 0.172240 6_2:-80331321 None:intergenic
ACAAGGTCTGTTGTTCTTCT+TGG 0.210830 6_2:+80332067 Msa0931110:CDS
CTTGTGGTAGGCCCCGTTCC+TGG 0.214230 6_2:+80331651 Msa0931110:CDS
ACATTAGGATTACTCGTTAA+TGG 0.226644 6_2:-80331990 None:intergenic
CTATATACGTAGGCGGGAAT+AGG 0.308836 6_2:+80331754 Msa0931110:CDS
CTATATTTCTTCCCAGGAAC+GGG 0.314257 6_2:-80331663 None:intergenic
AATCCTAATGTGGGTGGATT+TGG 0.318985 6_2:+80332002 Msa0931110:CDS
AAAATTATACGAAAAGAAAA+AGG 0.339453 6_2:+80331855 Msa0931110:CDS
TATATACGTAGGCGGGAATA+GGG 0.340058 6_2:+80331755 Msa0931110:CDS
CTATTCCCGCCTACGTATAT+AGG 0.341092 6_2:-80331753 None:intergenic
GTTAAACAAGTTCTTGCTAA+TGG 0.346567 6_2:+80331483 Msa0931110:CDS
CCCTCTGAAACAAGAAGTTC+TGG 0.373836 6_2:-80331945 None:intergenic
TAATGTGGGTGGATTTGGTC+AGG 0.386047 6_2:+80332007 Msa0931110:CDS
GAAATTTCAGGATGAATGAT+TGG 0.403258 6_2:+80331186 None:intergenic
TGACCAAATCCACCCACATT+AGG 0.412065 6_2:-80332005 None:intergenic
TGTTTAACTTGCATATCATA+AGG 0.412925 6_2:-80331468 None:intergenic
ATAACCCTGTTGAGCAAAAT+GGG 0.415476 6_2:-80331320 None:intergenic
TCTCTCTTAGTAGCGGGATC+TGG 0.425976 6_2:-80331711 None:intergenic
AATGGGATATGCATTTGAAA+TGG 0.431297 6_2:-80331303 None:intergenic
GTTTATAATGCTACAGCAAC+AGG 0.436701 6_2:+80331822 Msa0931110:CDS
GATCATGAGCAATACGGAAA+TGG 0.442149 6_2:-80331261 None:intergenic
TTGTGGTAGGCCCCGTTCCT+GGG 0.450790 6_2:+80331652 Msa0931110:CDS
TTATTACTCTTGCTCCCGTC+GGG 0.465288 6_2:-80331795 None:intergenic
AAAAGCATTTCTAGTTTGCA+TGG 0.489913 6_2:-80331210 None:intergenic
TGGATACGAAATAACGATAG+TGG 0.491690 6_2:+80331878 Msa0931110:CDS
ATTTCACTATATTTCTTCCC+AGG 0.497196 6_2:-80331669 None:intergenic
ATGGGATATGCATTTGAAAT+GGG 0.502392 6_2:-80331302 None:intergenic
GAGCAATACGGAAATGGATC+GGG 0.505456 6_2:-80331255 None:intergenic
CAAGATCCGTTACGTGTACA+AGG 0.506414 6_2:+80332050 Msa0931110:CDS
TATATAGATCATGAGCAATA+CGG 0.512581 6_2:-80331267 None:intergenic
ATCCGCCCGGTAGCTTCTCT+CGG 0.516777 6_2:-80331349 None:intergenic
AATATCCTATATACGTAGGC+GGG 0.517081 6_2:+80331748 Msa0931110:CDS
ATGTGGGTGGATTTGGTCAG+GGG 0.523100 6_2:+80332009 Msa0931110:CDS
ATTATTACTCTTGCTCCCGT+CGG 0.527873 6_2:-80331796 None:intergenic
CCAGAACTTCTTGTTTCAGA+GGG 0.530598 6_2:+80331945 Msa0931110:CDS
ACTATATTTCTTCCCAGGAA+CGG 0.533921 6_2:-80331664 None:intergenic
AATGTGGGTGGATTTGGTCA+GGG 0.534197 6_2:+80332008 Msa0931110:CDS
ATCTCGGGCGAAATACGATC+AGG 0.534200 6_2:-80331570 None:intergenic
GAAACAAGAAGTTCTGGTCC+TGG 0.545439 6_2:-80331939 None:intergenic
GCGGGATCTGGAGAAAGAAT+AGG 0.547213 6_2:-80331699 None:intergenic
GTAGGCGGGAATAGGGGAAG+GGG 0.547797 6_2:+80331762 Msa0931110:CDS
GTGAACATCTCTCTTAGTAG+CGG 0.549431 6_2:-80331718 None:intergenic
ACCAGAACTTCTTGTTTCAG+AGG 0.553828 6_2:+80331944 Msa0931110:CDS
AAAATCCGAGAGAAGCTACC+GGG 0.554646 6_2:+80331344 Msa0931110:CDS
TGAGCAATACGGAAATGGAT+CGG 0.555873 6_2:-80331256 None:intergenic
AACTGCTTCAAATACAGTAT+CGG 0.560303 6_2:-80331436 None:intergenic
GTGATTGATATTATACCGCC+AGG 0.566218 6_2:+80331921 Msa0931110:CDS
TGAACATCTCTCTTAGTAGC+GGG 0.566429 6_2:-80331717 None:intergenic
ATTAACGAGTAATCCTAATG+TGG 0.573726 6_2:+80331992 Msa0931110:CDS
GGGGCCAATTCAAAACCCTC+TGG 0.574508 6_2:-80331546 None:intergenic
GGGGTCAGATTTATCCCGAC+GGG 0.575656 6_2:+80331781 Msa0931110:CDS
ACGTAGGCGGGAATAGGGGA+AGG 0.589088 6_2:+80331760 Msa0931110:CDS
ACGATAGTGGATGCATCGGA+TGG 0.592008 6_2:+80331891 Msa0931110:CDS
ATCTGGAGAAAGAATAGGAA+AGG 0.599901 6_2:-80331694 None:intergenic
AACAGACCTTGTACACGTAA+CGG 0.600684 6_2:-80332056 None:intergenic
GAAAATCCGAGAGAAGCTAC+CGG 0.606144 6_2:+80331343 Msa0931110:CDS
TGTGGGTGGATTTGGTCAGG+GGG 0.611690 6_2:+80332010 Msa0931110:CDS
AAATATCCTATATACGTAGG+CGG 0.616381 6_2:+80331747 Msa0931110:CDS
TTAAAATATCCTATATACGT+AGG 0.623794 6_2:+80331744 Msa0931110:CDS
ACGAGTAATCCTAATGTGGG+TGG 0.626177 6_2:+80331996 Msa0931110:CDS
TCGGGCGAAATACGATCAGG+AGG 0.629985 6_2:-80331567 None:intergenic
ATTAGCACATACAATCCGCC+CGG 0.633238 6_2:-80331362 None:intergenic
AATAACGATAGTGGATGCAT+CGG 0.634066 6_2:+80331887 Msa0931110:CDS
TATATTTCTTCCCAGGAACG+GGG 0.637585 6_2:-80331662 None:intergenic
ATATACGTAGGCGGGAATAG+GGG 0.641009 6_2:+80331756 Msa0931110:CDS
CGTAGGCGGGAATAGGGGAA+GGG 0.650670 6_2:+80331761 Msa0931110:CDS
TTAACGAGTAATCCTAATGT+GGG 0.652400 6_2:+80331993 Msa0931110:CDS
CGGGCGAAATACGATCAGGA+GGG 0.656521 6_2:-80331566 None:intergenic
GGGCGAAATACGATCAGGAG+GGG 0.658846 6_2:-80331565 None:intergenic
AGGGGTCAGATTTATCCCGA+CGG 0.672516 6_2:+80331780 Msa0931110:CDS
ACAAGAAGTTCTGGTCCTGG+CGG 0.692543 6_2:-80331936 None:intergenic
ATCCGAGAGAAGCTACCGGG+CGG 0.767274 6_2:+80331347 Msa0931110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAAGAATATTTTTTTTTGT+GGG - chr6_2:80331636-80331655 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG + chr6_2:80331855-80331874 Msa0931110:CDS 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG + chr6_2:80332123-80332142 Msa0931110:CDS 15.0%
!!! ACAAGAATATTTTTTTTTGT+GGG - chr6_2:80331636-80331655 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG + chr6_2:80331855-80331874 Msa0931110:CDS 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG + chr6_2:80332123-80332142 Msa0931110:CDS 15.0%
!!! ACCTATTTTTTCTTTAATCT+CGG - chr6_2:80331589-80331608 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG - chr6_2:80331637-80331656 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG + chr6_2:80331635-80331654 Msa0931110:CDS 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG + chr6_2:80331639-80331658 Msa0931110:CDS 20.0%
!! TTAAAATATCCTATATACGT+AGG + chr6_2:80331744-80331763 Msa0931110:CDS 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG - chr6_2:80331589-80331608 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG - chr6_2:80331637-80331656 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG + chr6_2:80331635-80331654 Msa0931110:CDS 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG + chr6_2:80331639-80331658 Msa0931110:CDS 20.0%
!! TTAAAATATCCTATATACGT+AGG + chr6_2:80331744-80331763 Msa0931110:CDS 20.0%
!!! AAACTAGAAATGCTTTTTCT+TGG + chr6_2:80331216-80331235 Msa0931110:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG + chr6_2:80331223-80331242 Msa0931110:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG - chr6_2:80331270-80331289 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG - chr6_2:80331471-80331490 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG + chr6_2:80331493-80331512 Msa0931110:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG - chr6_2:80331588-80331607 None:intergenic 25.0%
! ATTATACGAAAAGAAAAAGG+TGG + chr6_2:80331858-80331877 Msa0931110:CDS 25.0%
!! TTATTTGGCACAAATCTTTT+TGG + chr6_2:80332096-80332115 Msa0931110:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG + chr6_2:80331216-80331235 Msa0931110:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG + chr6_2:80331223-80331242 Msa0931110:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG - chr6_2:80331270-80331289 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG - chr6_2:80331471-80331490 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG + chr6_2:80331493-80331512 Msa0931110:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG - chr6_2:80331588-80331607 None:intergenic 25.0%
! ATTATACGAAAAGAAAAAGG+TGG + chr6_2:80331858-80331877 Msa0931110:CDS 25.0%
!! TTATTTGGCACAAATCTTTT+TGG + chr6_2:80332096-80332115 Msa0931110:CDS 25.0%
!! AAAAGCATTTCTAGTTTGCA+TGG - chr6_2:80331213-80331232 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG - chr6_2:80331305-80331324 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG - chr6_2:80331306-80331325 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG + chr6_2:80331396-80331415 Msa0931110:intron 30.0%
AACTGCTTCAAATACAGTAT+CGG - chr6_2:80331439-80331458 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG + chr6_2:80331483-80331502 Msa0931110:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG + chr6_2:80331492-80331511 Msa0931110:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG + chr6_2:80331494-80331513 Msa0931110:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG + chr6_2:80331585-80331604 Msa0931110:CDS 30.0%
ATTTCACTATATTTCTTCCC+AGG - chr6_2:80331672-80331691 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG + chr6_2:80331747-80331766 Msa0931110:CDS 30.0%
ACATTAGGATTACTCGTTAA+TGG - chr6_2:80331993-80332012 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG + chr6_2:80331992-80332011 Msa0931110:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG + chr6_2:80331993-80332012 Msa0931110:CDS 30.0%
TCTTCTTGGCATCTATTATT+TGG + chr6_2:80332081-80332100 Msa0931110:CDS 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG - chr6_2:80331213-80331232 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG - chr6_2:80331305-80331324 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG - chr6_2:80331306-80331325 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG + chr6_2:80331396-80331415 Msa0931110:intron 30.0%
AACTGCTTCAAATACAGTAT+CGG - chr6_2:80331439-80331458 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG + chr6_2:80331483-80331502 Msa0931110:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG + chr6_2:80331492-80331511 Msa0931110:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG + chr6_2:80331494-80331513 Msa0931110:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG + chr6_2:80331585-80331604 Msa0931110:CDS 30.0%
ATTTCACTATATTTCTTCCC+AGG - chr6_2:80331672-80331691 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG + chr6_2:80331747-80331766 Msa0931110:CDS 30.0%
ACATTAGGATTACTCGTTAA+TGG - chr6_2:80331993-80332012 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG + chr6_2:80331992-80332011 Msa0931110:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG + chr6_2:80331993-80332012 Msa0931110:CDS 30.0%
TCTTCTTGGCATCTATTATT+TGG + chr6_2:80332081-80332100 Msa0931110:CDS 30.0%
! ATATCCCATTTTGCTCAACA+GGG + chr6_2:80331316-80331335 Msa0931110:CDS 35.0%
ATAACCCTGTTGAGCAAAAT+GGG - chr6_2:80331323-80331342 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG - chr6_2:80331390-80331409 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG + chr6_2:80331507-80331526 Msa0931110:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG + chr6_2:80331530-80331549 Msa0931110:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG + chr6_2:80331531-80331550 Msa0931110:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG + chr6_2:80331542-80331561 Msa0931110:CDS 35.0%
ACTATATTTCTTCCCAGGAA+CGG - chr6_2:80331667-80331686 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG - chr6_2:80331697-80331716 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG + chr6_2:80331748-80331767 Msa0931110:CDS 35.0%
GTTTATAATGCTACAGCAAC+AGG + chr6_2:80331822-80331841 Msa0931110:CDS 35.0%
TGGATACGAAATAACGATAG+TGG + chr6_2:80331878-80331897 Msa0931110:CDS 35.0%
!! AATAACGATAGTGGATGCAT+CGG + chr6_2:80331887-80331906 Msa0931110:CDS 35.0%
! ATATCCCATTTTGCTCAACA+GGG + chr6_2:80331316-80331335 Msa0931110:CDS 35.0%
ATAACCCTGTTGAGCAAAAT+GGG - chr6_2:80331323-80331342 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG - chr6_2:80331390-80331409 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG + chr6_2:80331507-80331526 Msa0931110:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG + chr6_2:80331530-80331549 Msa0931110:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG + chr6_2:80331531-80331550 Msa0931110:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG + chr6_2:80331542-80331561 Msa0931110:CDS 35.0%
ACTATATTTCTTCCCAGGAA+CGG - chr6_2:80331667-80331686 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG - chr6_2:80331697-80331716 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG + chr6_2:80331748-80331767 Msa0931110:CDS 35.0%
GTTTATAATGCTACAGCAAC+AGG + chr6_2:80331822-80331841 Msa0931110:CDS 35.0%
TGGATACGAAATAACGATAG+TGG + chr6_2:80331878-80331897 Msa0931110:CDS 35.0%
!! AATAACGATAGTGGATGCAT+CGG + chr6_2:80331887-80331906 Msa0931110:CDS 35.0%
TGAGCAATACGGAAATGGAT+CGG - chr6_2:80331259-80331278 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG - chr6_2:80331264-80331283 None:intergenic 40.0%
! CATATCCCATTTTGCTCAAC+AGG + chr6_2:80331315-80331334 Msa0931110:CDS 40.0%
CATAACCCTGTTGAGCAAAA+TGG - chr6_2:80331324-80331343 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG - chr6_2:80331406-80331425 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG + chr6_2:80331408-80331427 Msa0931110:intron 40.0%
TATATTTCTTCCCAGGAACG+GGG - chr6_2:80331665-80331684 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG - chr6_2:80331666-80331685 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG - chr6_2:80331720-80331739 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG - chr6_2:80331721-80331740 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG + chr6_2:80331755-80331774 Msa0931110:CDS 40.0%
ATTATTACTCTTGCTCCCGT+CGG - chr6_2:80331799-80331818 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG + chr6_2:80331921-80331940 Msa0931110:CDS 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG + chr6_2:80331944-80331963 Msa0931110:CDS 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG + chr6_2:80331945-80331964 Msa0931110:CDS 40.0%
! AATCCTAATGTGGGTGGATT+TGG + chr6_2:80332002-80332021 Msa0931110:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG - chr6_2:80332059-80332078 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG + chr6_2:80332067-80332086 Msa0931110:CDS 40.0%
TGAGCAATACGGAAATGGAT+CGG - chr6_2:80331259-80331278 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG - chr6_2:80331264-80331283 None:intergenic 40.0%
! CATATCCCATTTTGCTCAAC+AGG + chr6_2:80331315-80331334 Msa0931110:CDS 40.0%
CATAACCCTGTTGAGCAAAA+TGG - chr6_2:80331324-80331343 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG - chr6_2:80331406-80331425 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG + chr6_2:80331408-80331427 Msa0931110:intron 40.0%
TATATTTCTTCCCAGGAACG+GGG - chr6_2:80331665-80331684 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG - chr6_2:80331666-80331685 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG - chr6_2:80331720-80331739 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG - chr6_2:80331721-80331740 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG + chr6_2:80331755-80331774 Msa0931110:CDS 40.0%
ATTATTACTCTTGCTCCCGT+CGG - chr6_2:80331799-80331818 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG + chr6_2:80331921-80331940 Msa0931110:CDS 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG + chr6_2:80331944-80331963 Msa0931110:CDS 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG + chr6_2:80331945-80331964 Msa0931110:CDS 40.0%
! AATCCTAATGTGGGTGGATT+TGG + chr6_2:80332002-80332021 Msa0931110:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG - chr6_2:80332059-80332078 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG + chr6_2:80332067-80332086 Msa0931110:CDS 40.0%
GAGCAATACGGAAATGGATC+GGG - chr6_2:80331258-80331277 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG + chr6_2:80331343-80331362 Msa0931110:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG + chr6_2:80331344-80331363 Msa0931110:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG - chr6_2:80331365-80331384 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG - chr6_2:80331756-80331775 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG + chr6_2:80331754-80331773 Msa0931110:CDS 45.0%
ATATACGTAGGCGGGAATAG+GGG + chr6_2:80331756-80331775 Msa0931110:CDS 45.0%
TTATTACTCTTGCTCCCGTC+GGG - chr6_2:80331798-80331817 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG - chr6_2:80331942-80331961 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG - chr6_2:80331948-80331967 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG + chr6_2:80331996-80332015 Msa0931110:CDS 45.0%
TGACCAAATCCACCCACATT+AGG - chr6_2:80332008-80332027 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG + chr6_2:80332007-80332026 Msa0931110:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG + chr6_2:80332008-80332027 Msa0931110:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG + chr6_2:80332050-80332069 Msa0931110:CDS 45.0%
GAGCAATACGGAAATGGATC+GGG - chr6_2:80331258-80331277 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG + chr6_2:80331343-80331362 Msa0931110:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG + chr6_2:80331344-80331363 Msa0931110:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG - chr6_2:80331365-80331384 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG - chr6_2:80331756-80331775 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG + chr6_2:80331754-80331773 Msa0931110:CDS 45.0%
ATATACGTAGGCGGGAATAG+GGG + chr6_2:80331756-80331775 Msa0931110:CDS 45.0%
TTATTACTCTTGCTCCCGTC+GGG - chr6_2:80331798-80331817 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG - chr6_2:80331942-80331961 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG - chr6_2:80331948-80331967 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG + chr6_2:80331996-80332015 Msa0931110:CDS 45.0%
TGACCAAATCCACCCACATT+AGG - chr6_2:80332008-80332027 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG + chr6_2:80332007-80332026 Msa0931110:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG + chr6_2:80332008-80332027 Msa0931110:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG + chr6_2:80332050-80332069 Msa0931110:CDS 45.0%
!! AGTATCGGAAGTACCGCTTG+TGG - chr6_2:80331424-80331443 None:intergenic 50.0%
ATCTCGGGCGAAATACGATC+AGG - chr6_2:80331573-80331592 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG - chr6_2:80331702-80331721 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG - chr6_2:80331714-80331733 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG + chr6_2:80331780-80331799 Msa0931110:CDS 50.0%
!! ACGATAGTGGATGCATCGGA+TGG + chr6_2:80331891-80331910 Msa0931110:CDS 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG - chr6_2:80331939-80331958 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG + chr6_2:80332009-80332028 Msa0931110:CDS 50.0%
!! AGTATCGGAAGTACCGCTTG+TGG - chr6_2:80331424-80331443 None:intergenic 50.0%
ATCTCGGGCGAAATACGATC+AGG - chr6_2:80331573-80331592 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG - chr6_2:80331702-80331721 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG - chr6_2:80331714-80331733 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG + chr6_2:80331780-80331799 Msa0931110:CDS 50.0%
!! ACGATAGTGGATGCATCGGA+TGG + chr6_2:80331891-80331910 Msa0931110:CDS 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG - chr6_2:80331939-80331958 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG + chr6_2:80332009-80332028 Msa0931110:CDS 50.0%
GGGGCCAATTCAAAACCCTC+TGG - chr6_2:80331549-80331568 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG - chr6_2:80331568-80331587 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG - chr6_2:80331569-80331588 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG - chr6_2:80331570-80331589 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG + chr6_2:80331781-80331800 Msa0931110:CDS 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG + chr6_2:80332010-80332029 Msa0931110:CDS 55.0%
GGGGCCAATTCAAAACCCTC+TGG - chr6_2:80331549-80331568 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG - chr6_2:80331568-80331587 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG - chr6_2:80331569-80331588 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG - chr6_2:80331570-80331589 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG + chr6_2:80331781-80331800 Msa0931110:CDS 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG + chr6_2:80332010-80332029 Msa0931110:CDS 55.0%
ATCCGAGAGAAGCTACCGGG+CGG + chr6_2:80331347-80331366 Msa0931110:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG - chr6_2:80331352-80331371 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG + chr6_2:80331652-80331671 Msa0931110:CDS 60.0%
ACGTAGGCGGGAATAGGGGA+AGG + chr6_2:80331760-80331779 Msa0931110:CDS 60.0%
CGTAGGCGGGAATAGGGGAA+GGG + chr6_2:80331761-80331780 Msa0931110:CDS 60.0%
GTAGGCGGGAATAGGGGAAG+GGG + chr6_2:80331762-80331781 Msa0931110:CDS 60.0%
ATCCGAGAGAAGCTACCGGG+CGG + chr6_2:80331347-80331366 Msa0931110:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG - chr6_2:80331352-80331371 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG + chr6_2:80331652-80331671 Msa0931110:CDS 60.0%
ACGTAGGCGGGAATAGGGGA+AGG + chr6_2:80331760-80331779 Msa0931110:CDS 60.0%
CGTAGGCGGGAATAGGGGAA+GGG + chr6_2:80331761-80331780 Msa0931110:CDS 60.0%
GTAGGCGGGAATAGGGGAAG+GGG + chr6_2:80331762-80331781 Msa0931110:CDS 60.0%
CTTGTGGTAGGCCCCGTTCC+TGG + chr6_2:80331651-80331670 Msa0931110:CDS 65.0%
CTTGTGGTAGGCCCCGTTCC+TGG + chr6_2:80331651-80331670 Msa0931110:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 80331197 80332163 80331197 ID=Msa0931110;Name=Msa0931110
chr6_2 mRNA 80331197 80332163 80331197 ID=Msa0931110-mRNA-1;Parent=Msa0931110;Name=Msa0931110-mRNA-1;_AED=0.21;_eAED=0.22;_QI=0|0|0|1|0|0|2|0|303
chr6_2 exon 80331197 80331372 80331197 ID=Msa0931110-mRNA-1:exon:14064;Parent=Msa0931110-mRNA-1
chr6_2 exon 80331428 80332163 80331428 ID=Msa0931110-mRNA-1:exon:14065;Parent=Msa0931110-mRNA-1
chr6_2 CDS 80331197 80331372 80331197 ID=Msa0931110-mRNA-1:cds;Parent=Msa0931110-mRNA-1
chr6_2 CDS 80331428 80332163 80331428 ID=Msa0931110-mRNA-1:cds;Parent=Msa0931110-mRNA-1
Gene Sequence

>Msa0931110

ATGAATGATTGGACCATGCAAACTAGAAATGCTTTTTCTTGGATAAAGGAAGAGATTACCCGATCCATTTCCGTATTGCTCATGATCTATATAATAACTCGAGCACCCATTTCAAATGCATATCCCATTTTGCTCAACAGGGTTATGAAAATCCGAGAGAAGCTACCGGGCGGATTCGGTACTTCCGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAAGTTAAACAAGTTCTTGCTAATGGTAAAAAAGGGGCTTTGAATGTAGGTGCTGTTCTTATTTTACCAGAGGGTTTTGAATTGGCCCCTCCTGATCGTATTTCGCCCGAGATTAAAGAAAAAATAGGTAATTTGTCTTTTCAAAGCTATCGTCCCACAAAAAAAAATATTCTTGTGGTAGGCCCCGTTCCTGGGAAGAAATATAGTGAAATTACCTTTCCTATTCTTTCTCCAGATCCCGCTACTAAGAGAGATGTTCACTTCTTAAAATATCCTATATACGTAGGCGGGAATAGGGGAAGGGGTCAGATTTATCCCGACGGGAGCAAGAGTAATAATAATGTTTATAATGCTACAGCAACAGGTATAGTAAATAAAATTATACGAAAAGAAAAAGGTGGATACGAAATAACGATAGTGGATGCATCGGATGGACGTGAAGTGATTGATATTATACCGCCAGGACCAGAACTTCTTGTTTCAGAGGGTGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGTGGATTTGGTCAGGGGGATGCAGAAATAGTGCTTCAAGATCCGTTACGTGTACAAGGTCTGTTGTTCTTCTTGGCATCTATTATTTGGCACAAATCTTTTTGGTTCTTAAAAAGAAACAATTTGAAAAGGTTCAATTGTCCGAAATGA

Protein sequence

>Msa0931110

MNDWTMQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPILLNRVMKIREKLPGGFGTSDTVFEAVVRIPYDMQVKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEIKEKIGNLSFQSYRPTKKNILVVGPVPGKKYSEITFPILSPDPATKRDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATATGIVNKIIRKEKGGYEITIVDASDGREVIDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASIIWHKSFWFLKRNNLKRFNCPK*