AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0344280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0344280 MtrunA17_CPg0492851 87.385 325 1 2 65 349 1 325 0.0 557
Msa0344280 MtrunA17_Chr4g0015731 87.385 325 1 2 65 349 1 325 0.0 557
Msa0344280 MtrunA17_Chr4g0016821 87.385 325 1 2 65 349 1 325 0.0 557
Msa0344280 MtrunA17_Chr4g0016981 76.596 94 3 2 108 197 42 120 6.72e-40 137
Msa0344280 MtrunA17_Chr4g0016991 95.385 65 3 0 285 349 1 65 1.85e-36 126
Msa0344280 MtrunA17_Chr5g0403621 96.667 60 2 0 1 60 86 145 2.84e-35 126
Msa0344280 MtrunA17_CPg0492871 98.333 60 1 0 1 60 86 145 1.54e-34 126
Msa0344280 MtrunA17_Chr4g0015721 98.333 60 1 0 1 60 86 145 1.54e-34 126
Msa0344280 MtrunA17_Chr4g0016811 98.333 60 1 0 1 60 95 154 1.66e-34 126
Msa0344280 MtrunA17_Chr3g0141111 94.737 57 3 0 1 57 15 71 1.55e-32 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0344280 ATCG00540.1 79.688 320 25 2 70 349 1 320 1.61e-178 498
Msa0344280 ATCG00530.1 67.241 58 19 0 3 60 88 145 1.61e-18 84.0

Find 76 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTGGCATCTATTATTT+TGG 0.108321 3_1:-2741098 Msa0344280:CDS
TTCTAAGTGGTTATTCTATT+AGG 0.170612 3_1:-2742513 Msa0344280:CDS
ACAAGGTCTGTTGTTCTTCT+TGG 0.210830 3_1:-2741113 Msa0344280:CDS
TCTAAGTGGTTATTCTATTA+GGG 0.213858 3_1:-2742512 Msa0344280:CDS
ACATTAGGATTACTCGTTAA+TGG 0.226644 3_1:+2741190 None:intergenic
TAGAATAACCACTTAGAATA+AGG 0.296044 3_1:+2742518 None:intergenic
CTACAGGCTTATTAGCTAAA+TGG 0.299374 3_1:+2741793 None:intergenic
CTATATACGTAGGCGGGAAT+AGG 0.308836 3_1:-2741426 Msa0344280:CDS
AATCCTAATGTGGGTGGATT+TGG 0.318985 3_1:-2741178 Msa0344280:CDS
AACTCATTATTCTTAACTCT+TGG 0.323937 3_1:-2742480 Msa0344280:CDS
AAAATTATACGAAAAGAAAA+AGG 0.339453 3_1:-2741325 Msa0344280:CDS
TATATACGTAGGCGGGAATA+GGG 0.340058 3_1:-2741425 Msa0344280:CDS
CTATTCCCGCCTACGTATAT+AGG 0.341092 3_1:+2741427 None:intergenic
GTTAAACAAGTTCTTGCTAA+TGG 0.346567 3_1:-2741696 Msa0344280:CDS
GGTTGTTCGTCTCTATCAAT+TGG 0.367131 3_1:+2742590 None:intergenic
CCCTCTGAAACAAGAAGTTC+TGG 0.373836 3_1:+2741235 None:intergenic
TAATGTGGGTGGATTTGGTC+AGG 0.386047 3_1:-2741173 Msa0344280:CDS
TGACCAAATCCACCCACATT+AGG 0.412065 3_1:+2741175 None:intergenic
TGTTTAACTTGCATATCATA+AGG 0.412925 3_1:+2741711 None:intergenic
ACTCATTATTCTTAACTCTT+GGG 0.414290 3_1:-2742479 Msa0344280:CDS
AATGGGATATGCATTTGAAA+TGG 0.432612 3_1:+2741878 None:intergenic
GTTTATAATGCTACAGCAAC+AGG 0.436701 3_1:-2741358 Msa0344280:CDS
GATCATGAGCAATACGGAAA+TGG 0.442149 3_1:+2741920 None:intergenic
AAATCGTATGGATACGGTCT+TGG 0.446811 3_1:+2742569 None:intergenic
TTATTACTCTTGCTCCCGTC+GGG 0.465288 3_1:+2741385 None:intergenic
ATATGTTTCCTTATTCTAAG+TGG 0.468100 3_1:-2742526 Msa0344280:CDS
TACAGAAATGCAAAATCGTA+TGG 0.481344 3_1:+2742557 None:intergenic
ACTGCTTCAAATACAGTATC+GGG 0.488265 3_1:+2741744 None:intergenic
AAAAGCATTTCTAGTTTGCA+TGG 0.489913 3_1:+2741971 None:intergenic
TGGATACGAAATAACGATAG+TGG 0.491690 3_1:-2741302 Msa0344280:CDS
AACTGCTTCAAATACAGTAT+CGG 0.494328 3_1:+2741743 None:intergenic
ATGGGATATGCATTTGAAAT+GGG 0.502392 3_1:+2741879 None:intergenic
GAGCAATACGGAAATGGATC+GGG 0.505456 3_1:+2741926 None:intergenic
CAAGATCCGTTACGTGTACA+AGG 0.506414 3_1:-2741130 Msa0344280:CDS
TATATAGATCATGAGCAATA+CGG 0.512581 3_1:+2741914 None:intergenic
ATCCGCCCGGTAGCTTCTCT+CGG 0.516777 3_1:+2741831 None:intergenic
AATATCCTATATACGTAGGC+GGG 0.517081 3_1:-2741432 Msa0344280:CDS
ATGTGGGTGGATTTGGTCAG+GGG 0.523100 3_1:-2741171 Msa0344280:CDS
ATTATTACTCTTGCTCCCGT+CGG 0.527873 3_1:+2741384 None:intergenic
CCAGAACTTCTTGTTTCAGA+GGG 0.530598 3_1:-2741235 Msa0344280:CDS
AATGTGGGTGGATTTGGTCA+GGG 0.534197 3_1:-2741172 Msa0344280:CDS
ATCTCGGGCGAAATACGATC+AGG 0.534200 3_1:+2741609 None:intergenic
CTAAGTGGTTATTCTATTAG+GGG 0.545375 3_1:-2742511 Msa0344280:CDS
GAAACAAGAAGTTCTGGTCC+TGG 0.545439 3_1:+2741241 None:intergenic
GTAGGCGGGAATAGGGGAAG+GGG 0.547797 3_1:-2741418 Msa0344280:CDS
AATGCAAAATCGTATGGATA+CGG 0.548969 3_1:+2742563 None:intergenic
GTGAACATCTCTCTTAGTAG+CGG 0.549431 3_1:+2741462 None:intergenic
ACCAGAACTTCTTGTTTCAG+AGG 0.553828 3_1:-2741236 Msa0344280:CDS
AAAATCCGAGAGAAGCTACC+GGG 0.554646 3_1:-2741836 Msa0344280:CDS
TGAGCAATACGGAAATGGAT+CGG 0.555873 3_1:+2741925 None:intergenic
GTGATTGATATTATACCGCC+AGG 0.566218 3_1:-2741259 Msa0344280:CDS
TGAACATCTCTCTTAGTAGC+GGG 0.566429 3_1:+2741463 None:intergenic
ATTAACGAGTAATCCTAATG+TGG 0.573726 3_1:-2741188 Msa0344280:CDS
GGGGCCAATTCAAAACCCTC+TGG 0.574508 3_1:+2741633 None:intergenic
GGGGTCAGATTTATCCCGAC+GGG 0.575656 3_1:-2741399 Msa0344280:CDS
ACGTAGGCGGGAATAGGGGA+AGG 0.589088 3_1:-2741420 Msa0344280:CDS
ACGATAGTGGATGCATCGGA+TGG 0.592008 3_1:-2741289 Msa0344280:CDS
AACAGACCTTGTACACGTAA+CGG 0.600684 3_1:+2741124 None:intergenic
GAAAATCCGAGAGAAGCTAC+CGG 0.606144 3_1:-2741837 Msa0344280:CDS
TGTGGGTGGATTTGGTCAGG+GGG 0.611690 3_1:-2741170 Msa0344280:CDS
AAATATCCTATATACGTAGG+CGG 0.616381 3_1:-2741433 Msa0344280:CDS
TTAAAATATCCTATATACGT+AGG 0.623794 3_1:-2741436 Msa0344280:CDS
ACGAGTAATCCTAATGTGGG+TGG 0.626177 3_1:-2741184 Msa0344280:CDS
TCGGGCGAAATACGATCAGG+AGG 0.629985 3_1:+2741612 None:intergenic
ATTAGCACATACAATCCGCC+CGG 0.633238 3_1:+2741818 None:intergenic
AATAACGATAGTGGATGCAT+CGG 0.634066 3_1:-2741293 Msa0344280:CDS
ATATACGTAGGCGGGAATAG+GGG 0.641009 3_1:-2741424 Msa0344280:CDS
CGTAGGCGGGAATAGGGGAA+GGG 0.650670 3_1:-2741419 Msa0344280:CDS
TTAACGAGTAATCCTAATGT+GGG 0.652400 3_1:-2741187 Msa0344280:CDS
AGATATTGAGGTTCCACAAG+CGG 0.653295 3_1:-2741772 Msa0344280:intron
CGGGCGAAATACGATCAGGA+GGG 0.656521 3_1:+2741613 None:intergenic
GGGCGAAATACGATCAGGAG+GGG 0.658846 3_1:+2741614 None:intergenic
AGGGGTCAGATTTATCCCGA+CGG 0.672516 3_1:-2741400 Msa0344280:CDS
GTATCGGGAAGTACCGCTTG+TGG 0.687149 3_1:+2741759 None:intergenic
ACAAGAAGTTCTGGTCCTGG+CGG 0.692543 3_1:+2741244 None:intergenic
ATCCGAGAGAAGCTACCGGG+CGG 0.767274 3_1:-2741833 Msa0344280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATAAATCAGTTAATAAA+AGG + chr3_1:2741239-2741258 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG - chr3_1:2741240-2741259 Msa0344280:CDS 15.0%
!!! TAGATACAATTTTAAAATAC+TGG - chr3_1:2741376-2741395 Msa0344280:CDS 15.0%
!! AAAATTTCTACAATAAGATT+AGG + chr3_1:2741635-2741654 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG - chr3_1:2742318-2742337 Msa0344280:intron 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG - chr3_1:2742587-2742606 Msa0344280:CDS 15.0%
!! TACATAAATCAGTTAATAAA+AGG + chr3_1:2741239-2741258 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG - chr3_1:2741240-2741259 Msa0344280:CDS 15.0%
!!! TAGATACAATTTTAAAATAC+TGG - chr3_1:2741376-2741395 Msa0344280:CDS 15.0%
!! AAAATTTCTACAATAAGATT+AGG + chr3_1:2741635-2741654 None:intergenic 15.0%
!! AAAATTATACGAAAAGAAAA+AGG - chr3_1:2742318-2742337 Msa0344280:intron 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG - chr3_1:2742587-2742606 Msa0344280:CDS 15.0%
!!! AAAATTGTATCTAAAATGAC+TGG + chr3_1:2741369-2741388 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG + chr3_1:2741477-2741496 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG + chr3_1:2741567-2741586 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG - chr3_1:2741636-2741655 Msa0344280:CDS 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG + chr3_1:2742053-2742072 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTGT+GGG + chr3_1:2742100-2742119 None:intergenic 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG - chr3_1:2742102-2742121 Msa0344280:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG - chr3_1:2742207-2742226 Msa0344280:intron 20.0%
!!! AAAATTGTATCTAAAATGAC+TGG + chr3_1:2741369-2741388 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG + chr3_1:2741477-2741496 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG + chr3_1:2741567-2741586 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG - chr3_1:2741636-2741655 Msa0344280:CDS 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG + chr3_1:2742053-2742072 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTGT+GGG + chr3_1:2742100-2742119 None:intergenic 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG - chr3_1:2742102-2742121 Msa0344280:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG - chr3_1:2742207-2742226 Msa0344280:intron 20.0%
! ATATGTTTCCTTATTCTAAG+TGG - chr3_1:2741117-2741136 Msa0344280:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG + chr3_1:2741128-2741147 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG - chr3_1:2741130-2741149 Msa0344280:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG - chr3_1:2741131-2741150 Msa0344280:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG - chr3_1:2741163-2741182 Msa0344280:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG - chr3_1:2741164-2741183 Msa0344280:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG - chr3_1:2741327-2741346 Msa0344280:CDS 25.0%
! GAGATACACGATTTAAATAA+CGG + chr3_1:2741407-2741426 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG - chr3_1:2741585-2741604 Msa0344280:intron 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG - chr3_1:2741590-2741609 Msa0344280:intron 25.0%
!!! AAATAGCAGAATAATGGATA+GGG - chr3_1:2741591-2741610 Msa0344280:intron 25.0%
! TTTCTACAATAAGATTAGGT+AGG + chr3_1:2741631-2741650 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG - chr3_1:2741648-2741667 Msa0344280:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG - chr3_1:2741678-2741697 Msa0344280:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG - chr3_1:2741685-2741704 Msa0344280:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG + chr3_1:2741732-2741751 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG + chr3_1:2741935-2741954 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG - chr3_1:2741957-2741976 Msa0344280:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG + chr3_1:2742052-2742071 None:intergenic 25.0%
!!! CCACAAGAATATTTTTTTTG+TGG + chr3_1:2742101-2742120 None:intergenic 25.0%
! CCACAAAAAAAATATTCTTG+TGG - chr3_1:2742098-2742117 Msa0344280:intron 25.0%
! ATTATACGAAAAGAAAAAGG+TGG - chr3_1:2742321-2742340 Msa0344280:intron 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG - chr3_1:2742560-2742579 Msa0344280:CDS 25.0%
! ATATGTTTCCTTATTCTAAG+TGG - chr3_1:2741117-2741136 Msa0344280:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG + chr3_1:2741128-2741147 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG - chr3_1:2741130-2741149 Msa0344280:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG - chr3_1:2741131-2741150 Msa0344280:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG - chr3_1:2741163-2741182 Msa0344280:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG - chr3_1:2741164-2741183 Msa0344280:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG - chr3_1:2741327-2741346 Msa0344280:CDS 25.0%
! GAGATACACGATTTAAATAA+CGG + chr3_1:2741407-2741426 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG - chr3_1:2741585-2741604 Msa0344280:intron 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG - chr3_1:2741590-2741609 Msa0344280:intron 25.0%
!!! AAATAGCAGAATAATGGATA+GGG - chr3_1:2741591-2741610 Msa0344280:intron 25.0%
! TTTCTACAATAAGATTAGGT+AGG + chr3_1:2741631-2741650 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG - chr3_1:2741648-2741667 Msa0344280:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG - chr3_1:2741678-2741697 Msa0344280:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG - chr3_1:2741685-2741704 Msa0344280:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG + chr3_1:2741732-2741751 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG + chr3_1:2741935-2741954 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG - chr3_1:2741957-2741976 Msa0344280:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG + chr3_1:2742052-2742071 None:intergenic 25.0%
!!! CCACAAGAATATTTTTTTTG+TGG + chr3_1:2742101-2742120 None:intergenic 25.0%
! CCACAAAAAAAATATTCTTG+TGG - chr3_1:2742098-2742117 Msa0344280:intron 25.0%
! ATTATACGAAAAGAAAAAGG+TGG - chr3_1:2742321-2742340 Msa0344280:intron 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG - chr3_1:2742560-2742579 Msa0344280:CDS 25.0%
AATGCAAAATCGTATGGATA+CGG + chr3_1:2741083-2741102 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG + chr3_1:2741089-2741108 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG - chr3_1:2741132-2741151 Msa0344280:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG + chr3_1:2741361-2741380 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG + chr3_1:2741429-2741448 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG - chr3_1:2741554-2741573 Msa0344280:intron 30.0%
AATAAGATTAGGTAGGTTAC+TGG + chr3_1:2741624-2741643 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG + chr3_1:2741675-2741694 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG + chr3_1:2741767-2741786 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG + chr3_1:2741768-2741787 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG - chr3_1:2741859-2741878 Msa0344280:CDS 30.0%
AACTGCTTCAAATACAGTAT+CGG + chr3_1:2741903-2741922 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG - chr3_1:2741947-2741966 Msa0344280:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG - chr3_1:2741956-2741975 Msa0344280:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG - chr3_1:2741958-2741977 Msa0344280:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG - chr3_1:2742049-2742068 Msa0344280:intron 30.0%
ATTTCACTATATTTCTTCCC+AGG + chr3_1:2742135-2742154 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG - chr3_1:2742210-2742229 Msa0344280:intron 30.0%
ACATTAGGATTACTCGTTAA+TGG + chr3_1:2742456-2742475 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG - chr3_1:2742455-2742474 Msa0344280:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG - chr3_1:2742456-2742475 Msa0344280:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG - chr3_1:2742545-2742564 Msa0344280:CDS 30.0%
AATGCAAAATCGTATGGATA+CGG + chr3_1:2741083-2741102 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG + chr3_1:2741089-2741108 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG - chr3_1:2741132-2741151 Msa0344280:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG + chr3_1:2741361-2741380 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG + chr3_1:2741429-2741448 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG - chr3_1:2741554-2741573 Msa0344280:intron 30.0%
AATAAGATTAGGTAGGTTAC+TGG + chr3_1:2741624-2741643 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG + chr3_1:2741675-2741694 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG + chr3_1:2741767-2741786 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG + chr3_1:2741768-2741787 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG - chr3_1:2741859-2741878 Msa0344280:CDS 30.0%
AACTGCTTCAAATACAGTAT+CGG + chr3_1:2741903-2741922 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG - chr3_1:2741947-2741966 Msa0344280:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG - chr3_1:2741956-2741975 Msa0344280:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG - chr3_1:2741958-2741977 Msa0344280:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG - chr3_1:2742049-2742068 Msa0344280:intron 30.0%
ATTTCACTATATTTCTTCCC+AGG + chr3_1:2742135-2742154 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG - chr3_1:2742210-2742229 Msa0344280:intron 30.0%
ACATTAGGATTACTCGTTAA+TGG + chr3_1:2742456-2742475 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG - chr3_1:2742455-2742474 Msa0344280:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG - chr3_1:2742456-2742475 Msa0344280:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG - chr3_1:2742545-2742564 Msa0344280:CDS 30.0%
ATAGGATTCCATTCAACTCA+TGG - chr3_1:2741258-2741277 Msa0344280:CDS 35.0%
ATTCCATTCAACTCATGGTT+GGG - chr3_1:2741263-2741282 Msa0344280:CDS 35.0%
ATGGTTGGGAACTAATGATT+GGG - chr3_1:2741277-2741296 Msa0344280:CDS 35.0%
! GGGTCTGTCTATAAAGATTT+TGG - chr3_1:2741297-2741316 Msa0344280:CDS 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG - chr3_1:2741778-2741797 Msa0344280:intron 35.0%
!! TATCCCATTTTTGCTCAACA+GGG - chr3_1:2741779-2741798 Msa0344280:intron 35.0%
TAACCCTGTTGAGCAAAAAT+GGG + chr3_1:2741785-2741804 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG + chr3_1:2741786-2741805 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG + chr3_1:2741853-2741872 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG + chr3_1:2741902-2741921 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG - chr3_1:2741971-2741990 Msa0344280:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG - chr3_1:2741994-2742013 Msa0344280:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG - chr3_1:2741995-2742014 Msa0344280:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG - chr3_1:2742006-2742025 Msa0344280:intron 35.0%
ACTATATTTCTTCCCAGGAA+CGG + chr3_1:2742130-2742149 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG + chr3_1:2742160-2742179 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG - chr3_1:2742211-2742230 Msa0344280:intron 35.0%
GTTTATAATGCTACAGCAAC+AGG - chr3_1:2742285-2742304 Msa0344280:intron 35.0%
TGGATACGAAATAACGATAG+TGG - chr3_1:2742341-2742360 Msa0344280:intron 35.0%
!! AATAACGATAGTGGATGCAT+CGG - chr3_1:2742350-2742369 Msa0344280:intron 35.0%
ATAGGATTCCATTCAACTCA+TGG - chr3_1:2741258-2741277 Msa0344280:CDS 35.0%
ATTCCATTCAACTCATGGTT+GGG - chr3_1:2741263-2741282 Msa0344280:CDS 35.0%
ATGGTTGGGAACTAATGATT+GGG - chr3_1:2741277-2741296 Msa0344280:CDS 35.0%
! GGGTCTGTCTATAAAGATTT+TGG - chr3_1:2741297-2741316 Msa0344280:CDS 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG - chr3_1:2741778-2741797 Msa0344280:intron 35.0%
!! TATCCCATTTTTGCTCAACA+GGG - chr3_1:2741779-2741798 Msa0344280:intron 35.0%
TAACCCTGTTGAGCAAAAAT+GGG + chr3_1:2741785-2741804 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG + chr3_1:2741786-2741805 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG + chr3_1:2741853-2741872 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG + chr3_1:2741902-2741921 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG - chr3_1:2741971-2741990 Msa0344280:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG - chr3_1:2741994-2742013 Msa0344280:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG - chr3_1:2741995-2742014 Msa0344280:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG - chr3_1:2742006-2742025 Msa0344280:intron 35.0%
ACTATATTTCTTCCCAGGAA+CGG + chr3_1:2742130-2742149 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG + chr3_1:2742160-2742179 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG - chr3_1:2742211-2742230 Msa0344280:intron 35.0%
GTTTATAATGCTACAGCAAC+AGG - chr3_1:2742285-2742304 Msa0344280:intron 35.0%
TGGATACGAAATAACGATAG+TGG - chr3_1:2742341-2742360 Msa0344280:intron 35.0%
!! AATAACGATAGTGGATGCAT+CGG - chr3_1:2742350-2742369 Msa0344280:intron 35.0%
GGTTGTTCGTCTCTATCAAT+TGG + chr3_1:2741056-2741075 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG + chr3_1:2741077-2741096 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG - chr3_1:2741262-2741281 Msa0344280:CDS 40.0%
CATGGTTGGGAACTAATGAT+TGG - chr3_1:2741276-2741295 Msa0344280:CDS 40.0%
TGAGCAATACGGAAATGGAT+CGG + chr3_1:2741721-2741740 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG + chr3_1:2741726-2741745 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG + chr3_1:2741869-2741888 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG - chr3_1:2741871-2741890 Msa0344280:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG + chr3_1:2742128-2742147 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG + chr3_1:2742129-2742148 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG + chr3_1:2742183-2742202 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG + chr3_1:2742184-2742203 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG - chr3_1:2742218-2742237 Msa0344280:intron 40.0%
ATTATTACTCTTGCTCCCGT+CGG + chr3_1:2742262-2742281 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG - chr3_1:2742384-2742403 Msa0344280:intron 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG - chr3_1:2742407-2742426 Msa0344280:intron 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG - chr3_1:2742408-2742427 Msa0344280:intron 40.0%
! AATCCTAATGTGGGTGGATT+TGG - chr3_1:2742465-2742484 Msa0344280:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG + chr3_1:2742522-2742541 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG - chr3_1:2742530-2742549 Msa0344280:CDS 40.0%
GGTTGTTCGTCTCTATCAAT+TGG + chr3_1:2741056-2741075 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG + chr3_1:2741077-2741096 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG - chr3_1:2741262-2741281 Msa0344280:CDS 40.0%
CATGGTTGGGAACTAATGAT+TGG - chr3_1:2741276-2741295 Msa0344280:CDS 40.0%
TGAGCAATACGGAAATGGAT+CGG + chr3_1:2741721-2741740 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG + chr3_1:2741726-2741745 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG + chr3_1:2741869-2741888 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG - chr3_1:2741871-2741890 Msa0344280:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG + chr3_1:2742128-2742147 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG + chr3_1:2742129-2742148 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG + chr3_1:2742183-2742202 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG + chr3_1:2742184-2742203 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG - chr3_1:2742218-2742237 Msa0344280:intron 40.0%
ATTATTACTCTTGCTCCCGT+CGG + chr3_1:2742262-2742281 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG - chr3_1:2742384-2742403 Msa0344280:intron 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG - chr3_1:2742407-2742426 Msa0344280:intron 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG - chr3_1:2742408-2742427 Msa0344280:intron 40.0%
! AATCCTAATGTGGGTGGATT+TGG - chr3_1:2742465-2742484 Msa0344280:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG + chr3_1:2742522-2742541 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG - chr3_1:2742530-2742549 Msa0344280:CDS 40.0%
! GTTCCCAACCATGAGTTGAA+TGG + chr3_1:2741269-2741288 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG + chr3_1:2741720-2741739 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG - chr3_1:2741806-2741825 Msa0344280:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG - chr3_1:2741807-2741826 Msa0344280:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG + chr3_1:2741828-2741847 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG + chr3_1:2742219-2742238 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG - chr3_1:2742217-2742236 Msa0344280:intron 45.0%
ATATACGTAGGCGGGAATAG+GGG - chr3_1:2742219-2742238 Msa0344280:intron 45.0%
TTATTACTCTTGCTCCCGTC+GGG + chr3_1:2742261-2742280 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG + chr3_1:2742405-2742424 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG + chr3_1:2742411-2742430 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG - chr3_1:2742459-2742478 Msa0344280:CDS 45.0%
TGACCAAATCCACCCACATT+AGG + chr3_1:2742471-2742490 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG - chr3_1:2742470-2742489 Msa0344280:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG - chr3_1:2742471-2742490 Msa0344280:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG - chr3_1:2742513-2742532 Msa0344280:CDS 45.0%
! GTTCCCAACCATGAGTTGAA+TGG + chr3_1:2741269-2741288 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG + chr3_1:2741720-2741739 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG - chr3_1:2741806-2741825 Msa0344280:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG - chr3_1:2741807-2741826 Msa0344280:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG + chr3_1:2741828-2741847 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG + chr3_1:2742219-2742238 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG - chr3_1:2742217-2742236 Msa0344280:intron 45.0%
ATATACGTAGGCGGGAATAG+GGG - chr3_1:2742219-2742238 Msa0344280:intron 45.0%
TTATTACTCTTGCTCCCGTC+GGG + chr3_1:2742261-2742280 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG + chr3_1:2742405-2742424 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG + chr3_1:2742411-2742430 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG - chr3_1:2742459-2742478 Msa0344280:CDS 45.0%
TGACCAAATCCACCCACATT+AGG + chr3_1:2742471-2742490 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG - chr3_1:2742470-2742489 Msa0344280:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG - chr3_1:2742471-2742490 Msa0344280:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG - chr3_1:2742513-2742532 Msa0344280:CDS 45.0%
!!! AAAAAAACAAATTTTATAAT+TGG + chr3_1:2741485-2741504 None:intergenic 5.0%
!!! AAAAAAACAAATTTTATAAT+TGG + chr3_1:2741485-2741504 None:intergenic 5.0%
ATCTCGGGCGAAATACGATC+AGG + chr3_1:2742037-2742056 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG + chr3_1:2742165-2742184 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG + chr3_1:2742177-2742196 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG - chr3_1:2742243-2742262 Msa0344280:intron 50.0%
!! ACGATAGTGGATGCATCGGA+TGG - chr3_1:2742354-2742373 Msa0344280:intron 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG + chr3_1:2742402-2742421 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG - chr3_1:2742472-2742491 Msa0344280:CDS 50.0%
ATCTCGGGCGAAATACGATC+AGG + chr3_1:2742037-2742056 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG + chr3_1:2742165-2742184 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG + chr3_1:2742177-2742196 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG - chr3_1:2742243-2742262 Msa0344280:intron 50.0%
!! ACGATAGTGGATGCATCGGA+TGG - chr3_1:2742354-2742373 Msa0344280:intron 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG + chr3_1:2742402-2742421 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG - chr3_1:2742472-2742491 Msa0344280:CDS 50.0%
!! GTATCGGGAAGTACCGCTTG+TGG + chr3_1:2741887-2741906 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG + chr3_1:2742013-2742032 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG + chr3_1:2742032-2742051 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG + chr3_1:2742033-2742052 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG + chr3_1:2742034-2742053 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG - chr3_1:2742244-2742263 Msa0344280:intron 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG - chr3_1:2742473-2742492 Msa0344280:CDS 55.0%
!! GTATCGGGAAGTACCGCTTG+TGG + chr3_1:2741887-2741906 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG + chr3_1:2742013-2742032 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG + chr3_1:2742032-2742051 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG + chr3_1:2742033-2742052 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG + chr3_1:2742034-2742053 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG - chr3_1:2742244-2742263 Msa0344280:intron 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG - chr3_1:2742473-2742492 Msa0344280:CDS 55.0%
ATCCGAGAGAAGCTACCGGG+CGG - chr3_1:2741810-2741829 Msa0344280:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG + chr3_1:2741815-2741834 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG - chr3_1:2742115-2742134 Msa0344280:intron 60.0%
ACGTAGGCGGGAATAGGGGA+AGG - chr3_1:2742223-2742242 Msa0344280:intron 60.0%
CGTAGGCGGGAATAGGGGAA+GGG - chr3_1:2742224-2742243 Msa0344280:intron 60.0%
GTAGGCGGGAATAGGGGAAG+GGG - chr3_1:2742225-2742244 Msa0344280:intron 60.0%
ATCCGAGAGAAGCTACCGGG+CGG - chr3_1:2741810-2741829 Msa0344280:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG + chr3_1:2741815-2741834 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG - chr3_1:2742115-2742134 Msa0344280:intron 60.0%
ACGTAGGCGGGAATAGGGGA+AGG - chr3_1:2742223-2742242 Msa0344280:intron 60.0%
CGTAGGCGGGAATAGGGGAA+GGG - chr3_1:2742224-2742243 Msa0344280:intron 60.0%
GTAGGCGGGAATAGGGGAAG+GGG - chr3_1:2742225-2742244 Msa0344280:intron 60.0%
CTTGTGGTAGGCCCCGTTCC+TGG - chr3_1:2742114-2742133 Msa0344280:intron 65.0%
CTTGTGGTAGGCCCCGTTCC+TGG - chr3_1:2742114-2742133 Msa0344280:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 2741030 2742635 2741030 ID=Msa0344280;Name=Msa0344280
chr3_1 mRNA 2741030 2742635 2741030 ID=Msa0344280-mRNA-1;Parent=Msa0344280;Name=Msa0344280-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|0.33|0.25|4|0|349
chr3_1 exon 2742455 2742635 2742455 ID=Msa0344280-mRNA-1:exon:864;Parent=Msa0344280-mRNA-1
chr3_1 exon 2741797 2742017 2741797 ID=Msa0344280-mRNA-1:exon:863;Parent=Msa0344280-mRNA-1
chr3_1 exon 2741595 2741784 2741595 ID=Msa0344280-mRNA-1:exon:862;Parent=Msa0344280-mRNA-1
chr3_1 exon 2741030 2741487 2741030 ID=Msa0344280-mRNA-1:exon:861;Parent=Msa0344280-mRNA-1
chr3_1 CDS 2742455 2742635 2742455 ID=Msa0344280-mRNA-1:cds;Parent=Msa0344280-mRNA-1
chr3_1 CDS 2741797 2742017 2741797 ID=Msa0344280-mRNA-1:cds;Parent=Msa0344280-mRNA-1
chr3_1 CDS 2741595 2741784 2741595 ID=Msa0344280-mRNA-1:cds;Parent=Msa0344280-mRNA-1
chr3_1 CDS 2741030 2741487 2741030 ID=Msa0344280-mRNA-1:cds;Parent=Msa0344280-mRNA-1
Gene Sequence

>Msa0344280

ATGGAAATCTACAAAGAAAGCATCCAATTGATAGAGACGAACAACCAAGACCGTATCCATACGATTTTGCATTTCTGTACAAATATAATATGTTTCCTTATTCTAAGTGGTTATTCTATTAGGGGTAATCAAGAACTCATTATTCTTAACTCTTGGGTTCAAGAATTTCTATATAACTTAAAAATTTTCAGGATGAATGATTGGACCATGCAAACTAGAAATGCTTTTTCTTGGATAAAGGAAGAGATTACCCGATCCATTTCCGTATTGCTCATGATCTATATAATAACTCGAGCACCCATTTCAAATGCATATCCCATTTTTGCTCAACAGGGTTATGAAAATCCGAGAGAAGCTACCGGGCGGATTGTATGTGCTAATTGCCATTTAGCTAATAAGCCTGTTCCACAAGCGGTACTTCCCGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAAGTTAAACAAGTTCTTGCTAATGGTAAAAAAGGGGCTTTGAATGTAGGTGCTGTTCTTATTTTACCAGAGGGTTTTGAATTGGCCCCTCCTGATCGTATTTCGCCCGAGATTAAAGAAAAAATAGATCCCGCTACTAAGAGAGATGTTCACTTCTTAAAATATCCTATATACGTAGGCGGGAATAGGGGAAGGGGTCAGATTTATCCCGACGGGAGCAAGAGTAATAATAATGTTTATAATGCTACAGCAACAGGTATAGTAAATAAAATTATACGAAAAGAAAAAGGTGGATACGAAATAACGATAGTGGATGCATCGGATGGACGTGAAGTGATTGATATTATACCGCCAGGACCAGAACTTCTTGTTTCAGAGGGTGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGTGGATTTGGTCAGGGGGATGCAGAAATAGTGCTTCAAGATCCGTTACGTGTACAAGGTCTGTTGTTCTTCTTGGCATCTATTATTTTGGCACAAATCTTTTTGGTTCTTAAAAAGAAACAATTTGAAAAGGTTCAATTGTCCGAAATGAATTTTTAG

Protein sequence

>Msa0344280

MEIYKESIQLIETNNQDRIHTILHFCTNIICFLILSGYSIRGNQELIILNSWVQEFLYNLKIFRMNDWTMQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIVCANCHLANKPVPQAVLPDTVFEAVVRIPYDMQVKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEIKEKIDPATKRDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATATGIVNKIIRKEKGGYEITIVDASDGREVIDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASIILAQIFLVLKKKQFEKVQLSEMNF*