AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1205850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1205850 MtrunA17_Chr4g0054961 97.500 280 7 0 1 280 1 280 0.0 564
Msa1205850 MtrunA17_Chr5g0400291 78.819 288 53 2 1 280 2 289 1.59e-161 450
Msa1205850 MtrunA17_Chr1g0182821 37.143 245 138 6 10 252 13 243 9.97e-50 164
Msa1205850 MtrunA17_Chr4g0010471 33.704 270 141 7 1 254 1 248 2.13e-30 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1205850 AT1G32400.2 69.286 280 86 0 1 280 1 280 2.15e-131 374
Msa1205850 AT1G32400.1 69.286 280 86 0 1 280 1 280 2.15e-131 374
Msa1205850 AT1G32400.3 69.286 280 86 0 1 280 1 280 2.15e-131 374
Msa1205850 AT2G20230.1 33.333 267 151 5 3 251 6 263 2.74e-38 135
Msa1205850 AT2G20740.1 33.772 228 115 6 4 221 6 207 1.17e-37 132
Msa1205850 AT4G28770.1 38.172 186 103 3 75 258 105 280 1.87e-34 126
Msa1205850 AT4G28770.2 38.172 186 103 3 75 258 149 324 4.32e-34 126
Msa1205850 AT2G20740.2 40.397 151 81 3 66 210 4 151 7.24e-33 119
Msa1205850 AT2G20740.3 36.000 100 58 2 117 210 3 102 2.24e-15 71.6

Find 107 sgRNAs with CRISPR-Local

Find 400 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGCGAAGTTGAAAATTT+TGG 0.088527 8_1:-62367299 None:intergenic
GATACATTCAACTCATATTT+AGG 0.123932 8_1:-62372747 None:intergenic
AGAAAACATCACCATAATTT+AGG 0.126960 8_1:+62372656 Msa1205850:three_prime_UTR
CTCTTTGTCATTTCTTGTTT+TGG 0.136530 8_1:+62368944 Msa1205850:CDS
ACGTACTGTTGTCAGTAATT+TGG 0.176394 8_1:+62372699 Msa1205850:three_prime_UTR
CGTACTGTTGTCAGTAATTT+GGG 0.191267 8_1:+62372700 Msa1205850:three_prime_UTR
TTCATTTACTCCCTAAATTA+TGG 0.203907 8_1:-62372667 None:intergenic
GGTCTGGCAATGGTGGGATA+TGG 0.250918 8_1:+62367917 Msa1205850:CDS
AAAATACATCACCTTCATTC+TGG 0.299384 8_1:+62372796 Msa1205850:three_prime_UTR
TCCAACAAAGTATTCAGTTT+TGG 0.305556 8_1:+62369197 Msa1205850:intron
GGATGGCTTGTAGGGGTTGC+TGG 0.307397 8_1:+62367852 Msa1205850:exon
TCATCTTAGCCCTTATTGTT+CGG 0.310442 8_1:+62370096 Msa1205850:CDS
CATCTTAGCCCTTATTGTTC+GGG 0.313588 8_1:+62370097 Msa1205850:CDS
GGCTGACGGGCTTGCTGCCT+TGG 0.316943 8_1:-62370167 None:intergenic
TTATTGTTCGGGCTGCAAAT+AGG 0.317015 8_1:+62370108 Msa1205850:CDS
ACTTGGTCGACCTATGCTTA+TGG 0.319794 8_1:+62368024 Msa1205850:CDS
GAAAACATCACCATAATTTA+GGG 0.320638 8_1:+62372657 Msa1205850:three_prime_UTR
TTTACCTGTTCATTGGAGTT+GGG 0.331205 8_1:+62368915 Msa1205850:CDS
AAACTTTAGTAAATGATTAT+CGG 0.331388 8_1:+62372910 Msa1205850:three_prime_UTR
ATACATTCAACTCATATTTA+GGG 0.344706 8_1:-62372746 None:intergenic
AACTTCATACTGACCATTAC+CGG 0.352920 8_1:+62367896 Msa1205850:CDS
TGAGAAACGCGTATCGGATA+AGG 0.354161 8_1:+62367179 Msa1205850:five_prime_UTR
GTCTATCATTCACACTACTA+TGG 0.358060 8_1:+62372562 Msa1205850:three_prime_UTR
TCTTGGGATTGTTATCTTTG+AGG 0.367761 8_1:+62369447 Msa1205850:CDS
ATTTACCTGTTCATTGGAGT+TGG 0.368733 8_1:+62368914 Msa1205850:CDS
GCACCAGGTGTACCAGTTAC+AGG 0.370589 8_1:+62370215 Msa1205850:CDS
TATTTGCAGCCCGAACAATA+AGG 0.385840 8_1:-62370106 None:intergenic
AGTAGAGGAGGATGGCTTGT+AGG 0.395881 8_1:+62367843 Msa1205850:exon
GCTACGGAGTGATCACATTA+TGG 0.401087 8_1:-62372452 None:intergenic
CTGGTTGTGAGTTTACTTGC+TGG 0.402443 8_1:-62372408 None:intergenic
GGATCAGTTGTGCCTGTAAC+TGG 0.404417 8_1:-62370227 None:intergenic
AGAACTGGACTATTGTGAAA+TGG 0.409773 8_1:+62369419 Msa1205850:CDS
GTCTGGCAATGGTGGGATAT+GGG 0.420172 8_1:+62367918 Msa1205850:CDS
GAAATTCCAAGGGACAAAAC+TGG 0.423055 8_1:+62369364 Msa1205850:CDS
GTAGAGGAGGATGGCTTGTA+GGG 0.430148 8_1:+62367844 Msa1205850:exon
CACCATTGCCAGACCGGTAA+TGG 0.431922 8_1:-62367909 None:intergenic
TTGTGAAATGGGTTGCTCTT+GGG 0.434631 8_1:+62369431 Msa1205850:CDS
TAAAGTTGCGTGACAGTAAT+CGG 0.437735 8_1:+62372836 Msa1205850:three_prime_UTR
TTGTTGATCTTAGTAGAGCT+TGG 0.442554 8_1:+62369225 Msa1205850:CDS
ATTGTGAAATGGGTTGCTCT+TGG 0.443869 8_1:+62369430 Msa1205850:CDS
AGGTTTATTTACCTGTTCAT+TGG 0.446243 8_1:+62368908 Msa1205850:intron
ACACCTGGTGCAGGTCCAGC+TGG 0.449029 8_1:-62370203 None:intergenic
GATGGCTTGTAGGGGTTGCT+GGG 0.452738 8_1:+62367853 Msa1205850:exon
AAGAAACGATGATGACTGTC+TGG 0.454548 8_1:-62367247 None:intergenic
ACAACTTTCTGAGAGAGAAC+TGG 0.456234 8_1:+62369404 Msa1205850:CDS
GGGATATGGGATTTATCTGC+TGG 0.463999 8_1:+62367931 Msa1205850:CDS
GAGAAACGCGTATCGGATAA+GGG 0.473832 8_1:+62367180 Msa1205850:five_prime_UTR
GCTCCTTCTGCAGTATGGGC+TGG 0.476121 8_1:+62372342 Msa1205850:intron
ACTCCATGCATCATTTCTGC+TGG 0.481870 8_1:-62370255 None:intergenic
GGTTGAATTCAGTAGAGCTT+CGG 0.482474 8_1:+62367952 Msa1205850:CDS
CTGCCCCAACTCCAATGAAC+AGG 0.482635 8_1:-62368919 None:intergenic
TTGATAATTTGCCCAAGGCT+TGG 0.487542 8_1:+62368071 Msa1205850:CDS
ATTTGCAGCCCGAACAATAA+GGG 0.490381 8_1:-62370105 None:intergenic
GAGTGAAAAGAAAACCAAAC+AGG 0.501109 8_1:-62367273 None:intergenic
GTCTATTGAGCAAAGGCTGA+CGG 0.505722 8_1:-62370181 None:intergenic
CAGCATTCATACCAAGCCTT+GGG 0.506572 8_1:-62368082 None:intergenic
GCAGCATTCATACCAAGCCT+TGG 0.509997 8_1:-62368083 None:intergenic
GACCATTACCGGTCTGGCAA+TGG 0.510170 8_1:+62367907 Msa1205850:CDS
CAACGGCTCCTCTCTTCAGC+TGG 0.510530 8_1:-62372427 None:intergenic
ATTTCAAAGATTGTTGTTGT+GGG 0.512206 8_1:+62372488 Msa1205850:three_prime_UTR
CATTACCGGTCTGGCAATGG+TGG 0.517477 8_1:+62367910 Msa1205850:CDS
TTACCTGTTCATTGGAGTTG+GGG 0.523179 8_1:+62368916 Msa1205850:CDS
TTGCTGGAACCTTTGTGACT+CGG 0.526208 8_1:-62372392 None:intergenic
CATACTGACCATTACCGGTC+TGG 0.526569 8_1:+62367901 Msa1205850:CDS
AATTTCAAAGATTGTTGTTG+TGG 0.527232 8_1:+62372487 Msa1205850:three_prime_UTR
GAACTGGACTATTGTGAAAT+GGG 0.528635 8_1:+62369420 Msa1205850:CDS
CCTTTGCTCAATAGACCAGC+TGG 0.529305 8_1:+62370188 Msa1205850:CDS
TCATCACTATCGTAATCTAC+TGG 0.531183 8_1:-62370131 None:intergenic
TCTATTGAGCAAAGGCTGAC+GGG 0.533441 8_1:-62370180 None:intergenic
ATGCATGGAGTACAAGGATG+AGG 0.538451 8_1:+62370267 Msa1205850:CDS
GAAATGATGCATGGAGTACA+AGG 0.541340 8_1:+62370261 Msa1205850:CDS
AGAGGCAAAGCCATAAGCAT+AGG 0.548262 8_1:-62368034 None:intergenic
ATAATTTAGGGAGTAAATGA+AGG 0.552265 8_1:+62372669 Msa1205850:three_prime_UTR
ATATCCCACCATTGCCAGAC+CGG 0.553232 8_1:-62367915 None:intergenic
AATTCAGCCAGCTGTGGCTA+CGG 0.554186 8_1:-62372468 None:intergenic
TGGAACCTTTGTGACTCGGA+TGG 0.561436 8_1:-62372388 None:intergenic
AAAGGAATGAATGTGTGGAT+TGG 0.564262 8_1:-62367224 None:intergenic
GTAACTGGTACACCTGGTGC+AGG 0.572846 8_1:-62370212 None:intergenic
TAGTTGTGAGAAACGCGTAT+CGG 0.578313 8_1:+62367173 Msa1205850:five_prime_UTR
AGTGACATTGTGAGTAGAGG+AGG 0.590600 8_1:+62367831 Msa1205850:five_prime_UTR
AGACCAGCTGGACCTGCACC+AGG 0.591085 8_1:+62370200 Msa1205850:CDS
ACGATGATGACTGTCTGGAA+AGG 0.592337 8_1:-62367242 None:intergenic
CTTTGAAATTCAGCCAGCTG+TGG 0.593181 8_1:-62372474 None:intergenic
GAGTACAAGGATGAGGGAGA+AGG 0.593909 8_1:+62370274 Msa1205850:CDS
GATCAAACTCTAGTTCAACT+TGG 0.594550 8_1:+62368007 Msa1205850:CDS
TAGAGGAGGATGGCTTGTAG+GGG 0.596376 8_1:+62367845 Msa1205850:exon
GAATGAATGTGTGGATTGGA+AGG 0.596794 8_1:-62367220 None:intergenic
GCAGTATGGGCTGGATACAT+CGG 0.601573 8_1:+62372351 Msa1205850:intron
GTGCCTGTAACTGGTACACC+TGG 0.604124 8_1:-62370218 None:intergenic
ATGAAGAGTTCATTAATCCA+AGG 0.604574 8_1:+62370150 Msa1205850:CDS
ATTTAGGGCAACATAAAGCA+CGG 0.607268 8_1:-62372731 None:intergenic
TCTAGAAGGATACACAGCTC+AGG 0.613872 8_1:-62369000 None:intergenic
TCAAGTGACATTGTGAGTAG+AGG 0.619216 8_1:+62367828 Msa1205850:five_prime_UTR
CCAGCTGGTCTATTGAGCAA+AGG 0.620197 8_1:-62370188 None:intergenic
GCATCATTTCTGCTGGAACG+TGG 0.623509 8_1:-62370248 None:intergenic
TGTTGTGGGCAATGAAGTTG+AGG 0.623679 8_1:+62372502 Msa1205850:three_prime_UTR
GTTGTATTGCATCTATGACA+CGG 0.627570 8_1:+62368966 Msa1205850:CDS
TGCATGGAGTACAAGGATGA+GGG 0.628268 8_1:+62370268 Msa1205850:CDS
GTTCCAGCAGAAATGATGCA+TGG 0.636511 8_1:+62370252 Msa1205850:CDS
ATTACCGGTCTGGCAATGGT+GGG 0.644241 8_1:+62367911 Msa1205850:CDS
ACTCACAACCAGCTGAAGAG+AGG 0.649480 8_1:+62372419 Msa1205850:CDS
ATTGCATCTATGACACGGAA+TGG 0.652036 8_1:+62368971 Msa1205850:CDS
ACAATCCATCCGAGTCACAA+AGG 0.653165 8_1:+62372383 Msa1205850:CDS
ACATTGTGAGTAGAGGAGGA+TGG 0.668326 8_1:+62367835 Msa1205850:exon
GTGATCACATTATGGTACAA+CGG 0.682252 8_1:-62372444 None:intergenic
TCTGGAAAGGAATGAATGTG+TGG 0.692242 8_1:-62367229 None:intergenic
GTACTGTTGTCAGTAATTTG+GGG 0.696013 8_1:+62372701 Msa1205850:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTAATAAATGAATTTTT+TGG + chr8_1:62369645-62369664 Msa1205850:intron 10.0%
!! AAAATTTCATATTAAGTAAA+TGG + chr8_1:62370769-62370788 Msa1205850:intron 10.0%
!! AAATTTCATATTAAGTAAAT+GGG + chr8_1:62370770-62370789 Msa1205850:intron 10.0%
!! GATTAAATAAAAAGTAAAAC+AGG - chr8_1:62367435-62367454 None:intergenic 15.0%
!! ATGGTCAATTAAAAAAAATT+GGG + chr8_1:62367542-62367561 Msa1205850:intron 15.0%
!!! ATTATTTTTCCAAAGAAAAT+TGG - chr8_1:62368353-62368372 None:intergenic 15.0%
!! CAATAGAAATATTAAAATAC+AGG - chr8_1:62368458-62368477 None:intergenic 15.0%
!! AAATGAAATTACTTTATTGA+CGG + chr8_1:62368604-62368623 Msa1205850:intron 15.0%
!! ATATATTAAAGTAACAATTG+TGG - chr8_1:62368828-62368847 None:intergenic 15.0%
!!! GTTTTTGTCAAAAAATATAA+AGG - chr8_1:62369259-62369278 None:intergenic 15.0%
!!! TTATATTTTTTGACAAAAAC+TGG + chr8_1:62369259-62369278 Msa1205850:CDS 15.0%
!! AAAAGAAGATAATTATAAGA+TGG - chr8_1:62369341-62369360 None:intergenic 15.0%
!! GGGTAAATATAAAATTAAAT+AGG + chr8_1:62369800-62369819 Msa1205850:intron 15.0%
!! AAAATATAGTGATAAATTGT+TGG + chr8_1:62370528-62370547 Msa1205850:intron 15.0%
!!! ATTTTTCATATATTCTAACA+AGG - chr8_1:62370579-62370598 None:intergenic 15.0%
!! AATTTCATATTAAGTAAATG+GGG + chr8_1:62370771-62370790 Msa1205850:intron 15.0%
!! AAACTTTAGTAAATGATTAT+CGG + chr8_1:62372910-62372929 Msa1205850:three_prime_UTR 15.0%
!! AAATAAGTATGATTGATAGA+AGG - chr8_1:62367369-62367388 None:intergenic 20.0%
!!! CTAGATTTTATAGGAAATTA+TGG + chr8_1:62367498-62367517 Msa1205850:intron 20.0%
!!! CAATTTTTTTTAATTGACCA+TGG - chr8_1:62367543-62367562 None:intergenic 20.0%
!! CATGGTCAATTAAAAAAAAT+TGG + chr8_1:62367541-62367560 Msa1205850:intron 20.0%
!! TGGTCAATTAAAAAAAATTG+GGG + chr8_1:62367543-62367562 Msa1205850:intron 20.0%
!!! TTCTTAATTTGACGAAATTA+AGG + chr8_1:62367640-62367659 Msa1205850:intron 20.0%
!! TGGAAAAATAATGTGTAAAA+TGG + chr8_1:62368361-62368380 Msa1205850:intron 20.0%
!!! AATAATGTGTAAAATGGATT+TGG + chr8_1:62368367-62368386 Msa1205850:intron 20.0%
!!! ATAATGTGTAAAATGGATTT+GGG + chr8_1:62368368-62368387 Msa1205850:intron 20.0%
!! TCTTGTAAAACAAATACAAA+GGG - chr8_1:62368721-62368740 None:intergenic 20.0%
!! TGAAACACAATAAATATGTT+AGG - chr8_1:62369042-62369061 None:intergenic 20.0%
!!! CTTATAATTATCTTCTTTTC+AGG + chr8_1:62369342-62369361 Msa1205850:intron 20.0%
!! TTAAACGAAAGATATGTTAA+GGG - chr8_1:62369891-62369910 None:intergenic 20.0%
!! ATTAAACGAAAGATATGTTA+AGG - chr8_1:62369892-62369911 None:intergenic 20.0%
!!! ATACACATTTACATTTGTTA+TGG - chr8_1:62370451-62370470 None:intergenic 20.0%
!!! TATTAAAAGTATAGCACATA+CGG + chr8_1:62370716-62370735 Msa1205850:intron 20.0%
!! ATTTCATATTAAGTAAATGG+GGG + chr8_1:62370772-62370791 Msa1205850:intron 20.0%
!!! ATAAGAGAAGATATGTTTTT+AGG + chr8_1:62371112-62371131 Msa1205850:intron 20.0%
!! AAATCTTATAAGGAAAACTT+TGG - chr8_1:62371376-62371395 None:intergenic 20.0%
!!! AAAGTTTTCCTTATAAGATT+TGG + chr8_1:62371375-62371394 Msa1205850:intron 20.0%
!!! AAGTTTTCCTTATAAGATTT+GGG + chr8_1:62371376-62371395 Msa1205850:intron 20.0%
!!! TAAATTAAGACTTTTTCGTT+AGG - chr8_1:62371482-62371501 None:intergenic 20.0%
!!! TCATTTTCTCAGATTATTAT+CGG + chr8_1:62371795-62371814 Msa1205850:intron 20.0%
!!! CTATTTATATAGCTCTATTT+AGG + chr8_1:62372215-62372234 Msa1205850:intron 20.0%
!! ATACATTCAACTCATATTTA+GGG - chr8_1:62372749-62372768 None:intergenic 20.0%
!!! TGATGTATTTTAATTTGTGA+GGG - chr8_1:62372787-62372806 None:intergenic 20.0%
!! ATTGCGAAGTTGAAAATTTT+GGG - chr8_1:62367301-62367320 None:intergenic 25.0%
!! AATTGCGAAGTTGAAAATTT+TGG - chr8_1:62367302-62367321 None:intergenic 25.0%
! AATAAAAAGTAAAACAGGCA+AGG - chr8_1:62367430-62367449 None:intergenic 25.0%
!! TTTTCTGAGCTAGATTTTAT+AGG + chr8_1:62367489-62367508 Msa1205850:intron 25.0%
! GGTCAATTAAAAAAAATTGG+GGG + chr8_1:62367544-62367563 Msa1205850:intron 25.0%
! AATTTGACGAAATTAAGGTT+AGG + chr8_1:62367645-62367664 Msa1205850:intron 25.0%
! AATTAAGGTTAGGATTGATA+TGG + chr8_1:62367655-62367674 Msa1205850:intron 25.0%
! ATTAAGGTTAGGATTGATAT+GGG + chr8_1:62367656-62367675 Msa1205850:intron 25.0%
! CATGGATTCTATAAAACAAT+TGG - chr8_1:62367682-62367701 None:intergenic 25.0%
! ACACATGAATTTAAACATCA+TGG - chr8_1:62367700-62367719 None:intergenic 25.0%
! GAGAAAAAAATATTGTGCAT+TGG + chr8_1:62367778-62367797 Msa1205850:intron 25.0%
!!! ACTGTTTTGATTTTGATTGA+AGG + chr8_1:62367803-62367822 Msa1205850:five_prime_UTR 25.0%
! TCAAAAATGTTATCAGAAAG+AGG - chr8_1:62368055-62368074 None:intergenic 25.0%
! CATACTCTAATGAAAACAAA+AGG - chr8_1:62368194-62368213 None:intergenic 25.0%
!! AAAACTACTCCAATTTTCTT+TGG + chr8_1:62368341-62368360 Msa1205850:intron 25.0%
! CTTGTAAAACAAATACAAAG+GGG - chr8_1:62368720-62368739 None:intergenic 25.0%
! CTCTTGTAAAACAAATACAA+AGG - chr8_1:62368722-62368741 None:intergenic 25.0%
!! CATTTATTAAAAGTTGACTC+TGG - chr8_1:62369638-62369657 None:intergenic 25.0%
! AGAACATACTATTAAAAGCA+TGG - chr8_1:62369671-62369690 None:intergenic 25.0%
!!! ACTTTGAAATTCAAATGTCT+TGG + chr8_1:62369850-62369869 Msa1205850:intron 25.0%
! AATTCCATAAGCATAACAAT+CGG - chr8_1:62370061-62370080 None:intergenic 25.0%
!!! TTGTCCTAAGTTTTAATTTG+TGG + chr8_1:62370361-62370380 Msa1205850:intron 25.0%
!!! TTTTAAAAGTATTCTCGAGA+AGG - chr8_1:62370512-62370531 None:intergenic 25.0%
!!! ATTTTAGCCTACAATATCTT+AGG + chr8_1:62370615-62370634 Msa1205850:intron 25.0%
!! GATTTATTTCCTTGTTTAGT+CGG + chr8_1:62370693-62370712 Msa1205850:intron 25.0%
! TTTCATATTAAGTAAATGGG+GGG + chr8_1:62370773-62370792 Msa1205850:intron 25.0%
!!! CATACTCTATTCATTTTTTG+AGG + chr8_1:62370837-62370856 Msa1205850:intron 25.0%
! ACAAATGCATACTATTTGTA+AGG - chr8_1:62371204-62371223 None:intergenic 25.0%
! TATCTTTGAATTTGGACTAT+AGG - chr8_1:62371449-62371468 None:intergenic 25.0%
! CTGAATACTATCTTTGAATT+TGG - chr8_1:62371457-62371476 None:intergenic 25.0%
! GATTTCATGTCTATAATGAA+TGG + chr8_1:62372063-62372082 Msa1205850:intron 25.0%
!! AATTTCAAAGATTGTTGTTG+TGG + chr8_1:62372487-62372506 Msa1205850:three_prime_UTR 25.0%
!! ATTTCAAAGATTGTTGTTGT+GGG + chr8_1:62372488-62372507 Msa1205850:three_prime_UTR 25.0%
! AGAAAACATCACCATAATTT+AGG + chr8_1:62372656-62372675 Msa1205850:three_prime_UTR 25.0%
! GAAAACATCACCATAATTTA+GGG + chr8_1:62372657-62372676 Msa1205850:three_prime_UTR 25.0%
! TTCATTTACTCCCTAAATTA+TGG - chr8_1:62372670-62372689 None:intergenic 25.0%
! ATAATTTAGGGAGTAAATGA+AGG + chr8_1:62372669-62372688 Msa1205850:three_prime_UTR 25.0%
! GATACATTCAACTCATATTT+AGG - chr8_1:62372750-62372769 None:intergenic 25.0%
!!! GTGATGTATTTTAATTTGTG+AGG - chr8_1:62372788-62372807 None:intergenic 25.0%
! AAAAATAAACACCAGAATGA+AGG - chr8_1:62372810-62372829 None:intergenic 25.0%
!!! CAAGGTTTTGAAGGAAAAAA+TGG - chr8_1:62367412-62367431 None:intergenic 30.0%
AATTGCATTGAAAAACACCA+TGG + chr8_1:62367523-62367542 Msa1205850:intron 30.0%
ATCTTGGGAGAAAAAATGAT+GGG - chr8_1:62367607-62367626 None:intergenic 30.0%
AATCTTGGGAGAAAAAATGA+TGG - chr8_1:62367608-62367627 None:intergenic 30.0%
AAACCCAGTAGAAAAATCTT+GGG - chr8_1:62367622-62367641 None:intergenic 30.0%
!! CATTTTTGATAATTTGCCCA+AGG + chr8_1:62368066-62368085 Msa1205850:CDS 30.0%
AATCAATACACTCCAAAAAC+AGG - chr8_1:62368119-62368138 None:intergenic 30.0%
ATTAGAGTATGTTGATGCAT+CGG + chr8_1:62368203-62368222 Msa1205850:intron 30.0%
TTCTATTGTAAGCAGATATG+TGG + chr8_1:62368470-62368489 Msa1205850:intron 30.0%
TTTCAATGCCAATTGAATGT+AGG + chr8_1:62368498-62368517 Msa1205850:intron 30.0%
TTTATTGACGGTCCATATAT+TGG + chr8_1:62368616-62368635 Msa1205850:intron 30.0%
GTGTAGTGTATACCAATATA+TGG - chr8_1:62368631-62368650 None:intergenic 30.0%
GTGGTGAATATAATCCATTA+GGG - chr8_1:62368809-62368828 None:intergenic 30.0%
TGTGGTGAATATAATCCATT+AGG - chr8_1:62368810-62368829 None:intergenic 30.0%
AGGTTTATTTACCTGTTCAT+TGG + chr8_1:62368908-62368927 Msa1205850:intron 30.0%
!! CTCTTTGTCATTTCTTGTTT+TGG + chr8_1:62368944-62368963 Msa1205850:CDS 30.0%
ATAGCATAAGACATTCTAGA+AGG - chr8_1:62369017-62369036 None:intergenic 30.0%
CTGAATACTTTGTTGGATTA+AGG - chr8_1:62369194-62369213 None:intergenic 30.0%
!! TCCAACAAAGTATTCAGTTT+TGG + chr8_1:62369197-62369216 Msa1205850:intron 30.0%
ACCAAAACTGAATACTTTGT+TGG - chr8_1:62369201-62369220 None:intergenic 30.0%
!! AACAAAGTATTCAGTTTTGG+TGG + chr8_1:62369200-62369219 Msa1205850:intron 30.0%
! TTTTGACAAAAACTGGAAAG+AGG + chr8_1:62369266-62369285 Msa1205850:CDS 30.0%
! GGGTACTAGTATTTTATGAT+AGG + chr8_1:62369294-62369313 Msa1205850:intron 30.0%
!! TTCTTTTCAGGAAATTCCAA+GGG + chr8_1:62369354-62369373 Msa1205850:intron 30.0%
CGATTACAAGTGAAATCATA+AGG + chr8_1:62369693-62369712 Msa1205850:intron 30.0%
TCATAAGGATATAGTTTCAC+AGG + chr8_1:62369708-62369727 Msa1205850:intron 30.0%
CATAAGGATATAGTTTCACA+GGG + chr8_1:62369709-62369728 Msa1205850:intron 30.0%
AAGCAAAAAGAAGAAGACAA+TGG + chr8_1:62369771-62369790 Msa1205850:intron 30.0%
AAAGAAGAAGACAATGGTTA+AGG + chr8_1:62369777-62369796 Msa1205850:intron 30.0%
AAGAAGAAGACAATGGTTAA+GGG + chr8_1:62369778-62369797 Msa1205850:intron 30.0%
GTTATGCTTATGGAATTTGT+AGG + chr8_1:62370064-62370083 Msa1205850:intron 30.0%
ATGAAGAGTTCATTAATCCA+AGG + chr8_1:62370150-62370169 Msa1205850:CDS 30.0%
AGCACCACAAATTAAAACTT+AGG - chr8_1:62370368-62370387 None:intergenic 30.0%
!! TGTGGTGCTATTATAATCAA+TGG + chr8_1:62370379-62370398 Msa1205850:intron 30.0%
AAGTGAATCATAAACCTCTT+TGG - chr8_1:62370420-62370439 None:intergenic 30.0%
GTTATGTCCTAAGATATTGT+AGG - chr8_1:62370625-62370644 None:intergenic 30.0%
!! TACGAGTAGTTTTACAGATT+CGG + chr8_1:62370660-62370679 Msa1205850:intron 30.0%
!! CTTTTAATACCGACTAAACA+AGG - chr8_1:62370705-62370724 None:intergenic 30.0%
ATAAAAAGAGTGACTTGACT+TGG + chr8_1:62370862-62370881 Msa1205850:intron 30.0%
ATATCTACATGATCCATTTG+AGG + chr8_1:62370902-62370921 Msa1205850:intron 30.0%
! AACAGAATTGTCTTTTCTCT+TGG + chr8_1:62370942-62370961 Msa1205850:intron 30.0%
ACAAATGCAAGTGGAATAAT+AGG - chr8_1:62371281-62371300 None:intergenic 30.0%
AAACAAGACTACAACACATT+TGG - chr8_1:62371311-62371330 None:intergenic 30.0%
AAAACTTTGGTCAAATCTCT+AGG - chr8_1:62371363-62371382 None:intergenic 30.0%
CTTAATTTATGCCTATTCAG+TGG + chr8_1:62371493-62371512 Msa1205850:intron 30.0%
CAGGAAATCATAAAGGAAAA+TGG - chr8_1:62371552-62371571 None:intergenic 30.0%
! CATTTTCCTTTATGATTTCC+TGG + chr8_1:62371550-62371569 Msa1205850:intron 30.0%
TCATAGGATAAAGTGCATAT+GGG - chr8_1:62371687-62371706 None:intergenic 30.0%
TTCATAGGATAAAGTGCATA+TGG - chr8_1:62371688-62371707 None:intergenic 30.0%
TTCAGTGTAATCATATGTGT+TGG - chr8_1:62371770-62371789 None:intergenic 30.0%
TGGAAAAAGTTGTCCTTATA+CGG - chr8_1:62371938-62371957 None:intergenic 30.0%
! TTTTTCCATATGTTGGATCT+AGG + chr8_1:62371950-62371969 Msa1205850:intron 30.0%
TCAGACACTTTATACAACAT+GGG - chr8_1:62372001-62372020 None:intergenic 30.0%
ACAAAAAACACAGTACAATC+AGG - chr8_1:62372094-62372113 None:intergenic 30.0%
AAAAACCAATGCAAAAAGGA+TGG - chr8_1:62372175-62372194 None:intergenic 30.0%
GTGAAAAAACCAATGCAAAA+AGG - chr8_1:62372179-62372198 None:intergenic 30.0%
CATGTCATGGAAAAAAATGA+TGG - chr8_1:62372592-62372611 None:intergenic 30.0%
AAAATACATCACCTTCATTC+TGG + chr8_1:62372796-62372815 Msa1205850:three_prime_UTR 30.0%
AAAGGAATGAATGTGTGGAT+TGG - chr8_1:62367227-62367246 None:intergenic 35.0%
! CATCGTTTCTTTTTCCTGTT+TGG + chr8_1:62367259-62367278 Msa1205850:five_prime_UTR 35.0%
GAGTGAAAAGAAAACCAAAC+AGG - chr8_1:62367276-62367295 None:intergenic 35.0%
!! TAAAACAGGCAAGGTTTTGA+AGG - chr8_1:62367421-62367440 None:intergenic 35.0%
! TTCTCCCAAGATTTTTCTAC+TGG + chr8_1:62367615-62367634 Msa1205850:intron 35.0%
! TCTCCCAAGATTTTTCTACT+GGG + chr8_1:62367616-62367635 Msa1205850:intron 35.0%
GAAACCCAGTAGAAAAATCT+TGG - chr8_1:62367623-62367642 None:intergenic 35.0%
! AGACCATGCTGTTAATGTTT+TGG + chr8_1:62367728-62367747 Msa1205850:intron 35.0%
CACAAAAGACGTGAAATGAA+AGG - chr8_1:62367756-62367775 None:intergenic 35.0%
AACTTCATACTGACCATTAC+CGG + chr8_1:62367896-62367915 Msa1205850:CDS 35.0%
! GATCAAACTCTAGTTCAACT+TGG + chr8_1:62368007-62368026 Msa1205850:CDS 35.0%
! TAATTTGTGCCTGTGCTAAT+GGG + chr8_1:62368250-62368269 Msa1205850:intron 35.0%
ATAGCACACCTACATTCAAT+TGG - chr8_1:62368509-62368528 None:intergenic 35.0%
TATTGGTATACACTACACAC+TGG + chr8_1:62368633-62368652 Msa1205850:intron 35.0%
TATACACTACACACTGGATA+TGG + chr8_1:62368639-62368658 Msa1205850:intron 35.0%
ATACACTACACACTGGATAT+GGG + chr8_1:62368640-62368659 Msa1205850:intron 35.0%
! TGTTTTACAAGAGACAGTCA+TGG + chr8_1:62368729-62368748 Msa1205850:intron 35.0%
! GTTTTACAAGAGACAGTCAT+GGG + chr8_1:62368730-62368749 Msa1205850:intron 35.0%
CCAAACATGGAATACACAAT+CGG - chr8_1:62368887-62368906 None:intergenic 35.0%
GTAAATAAACCTGCCAAACA+TGG - chr8_1:62368900-62368919 None:intergenic 35.0%
ATTTACCTGTTCATTGGAGT+TGG + chr8_1:62368914-62368933 Msa1205850:CDS 35.0%
TTTACCTGTTCATTGGAGTT+GGG + chr8_1:62368915-62368934 Msa1205850:CDS 35.0%
GTTGTATTGCATCTATGACA+CGG + chr8_1:62368966-62368985 Msa1205850:CDS 35.0%
TTGTTGATCTTAGTAGAGCT+TGG + chr8_1:62369225-62369244 Msa1205850:CDS 35.0%
AAAAACTGGAAAGAGGTAAG+TGG + chr8_1:62369273-62369292 Msa1205850:intron 35.0%
AAAACTGGAAAGAGGTAAGT+GGG + chr8_1:62369274-62369293 Msa1205850:intron 35.0%
!! CTTCTTTTCAGGAAATTCCA+AGG + chr8_1:62369353-62369372 Msa1205850:intron 35.0%
AGAACTGGACTATTGTGAAA+TGG + chr8_1:62369419-62369438 Msa1205850:CDS 35.0%
GAACTGGACTATTGTGAAAT+GGG + chr8_1:62369420-62369439 Msa1205850:CDS 35.0%
TCTTGGGATTGTTATCTTTG+AGG + chr8_1:62369447-62369466 Msa1205850:CDS 35.0%
TTACAATCAACTTGGCTGTA+TGG - chr8_1:62369586-62369605 None:intergenic 35.0%
! GATGTTGGTTACAATCAACT+TGG - chr8_1:62369594-62369613 None:intergenic 35.0%
AGAAGAAGACAATGGTTAAG+GGG + chr8_1:62369779-62369798 Msa1205850:intron 35.0%
CGAAAGATATGTTAAGGGTA+AGG - chr8_1:62369886-62369905 None:intergenic 35.0%
TCATCTTAGCCCTTATTGTT+CGG + chr8_1:62370096-62370115 Msa1205850:CDS 35.0%
TCATCACTATCGTAATCTAC+TGG - chr8_1:62370134-62370153 None:intergenic 35.0%
AAACTATTGCAAGTTCCCAA+GGG - chr8_1:62370554-62370573 None:intergenic 35.0%
TATTAAGTAAATGGGGGGTT+AGG + chr8_1:62370778-62370797 Msa1205850:intron 35.0%
CATCATGTTGTGAGAAGAAT+TGG + chr8_1:62370810-62370829 Msa1205850:intron 35.0%
!! TTTGTGCAACATTTTGACAC+TGG + chr8_1:62371032-62371051 Msa1205850:intron 35.0%
ACTACAACACATTTGGTATG+TGG - chr8_1:62371304-62371323 None:intergenic 35.0%
!! TGTTGTAGTCTTGTTTGTGA+CGG + chr8_1:62371315-62371334 Msa1205850:intron 35.0%
!!! TCCATCAGCACACTTTTTTT+GGG + chr8_1:62371524-62371543 Msa1205850:intron 35.0%
TGGAAACCAGGAAATCATAA+AGG - chr8_1:62371559-62371578 None:intergenic 35.0%
CATACTAGATACTCCAAAGA+TGG - chr8_1:62371592-62371611 None:intergenic 35.0%
! GTAATCATATGTGTTGGTGT+CGG - chr8_1:62371764-62371783 None:intergenic 35.0%
GAGATACAGTCTATGAAGTA+AGG - chr8_1:62371838-62371857 None:intergenic 35.0%
TACTTCATAGACTGTATCTC+TGG + chr8_1:62371838-62371857 Msa1205850:intron 35.0%
!!! TCTCTGGCTGCTATTTTTAT+AGG + chr8_1:62371854-62371873 Msa1205850:intron 35.0%
!!! CTCTGGCTGCTATTTTTATA+GGG + chr8_1:62371855-62371874 Msa1205850:intron 35.0%
!!! GCTACTTTTTGGGTTGAATT+AGG - chr8_1:62371892-62371911 None:intergenic 35.0%
!!! TACCTCTTGAGCTACTTTTT+GGG - chr8_1:62371902-62371921 None:intergenic 35.0%
!!! TTACCTCTTGAGCTACTTTT+TGG - chr8_1:62371903-62371922 None:intergenic 35.0%
AAAGTTGTCCTTATACGGTT+TGG - chr8_1:62371933-62371952 None:intergenic 35.0%
!! GGACAACTTTTTCCATATGT+TGG + chr8_1:62371943-62371962 Msa1205850:intron 35.0%
AACTACCTAGATCCAACATA+TGG - chr8_1:62371958-62371977 None:intergenic 35.0%
GATCTAGGTAGTTAGTATCT+GGG + chr8_1:62371965-62371984 Msa1205850:intron 35.0%
CTCAGACACTTTATACAACA+TGG - chr8_1:62372002-62372021 None:intergenic 35.0%
GTGAAAATACCAACGCAAAA+AGG - chr8_1:62372136-62372155 None:intergenic 35.0%
! TGTTGCTTGAGACTATTGAA+AGG + chr8_1:62372250-62372269 Msa1205850:intron 35.0%
GTTGCTTGAGACTATTGAAA+GGG + chr8_1:62372251-62372270 Msa1205850:intron 35.0%
ATATGACTATCTGACACCAA+TGG + chr8_1:62372318-62372337 Msa1205850:intron 35.0%
GTGATCACATTATGGTACAA+CGG - chr8_1:62372447-62372466 None:intergenic 35.0%
GTCTATCATTCACACTACTA+TGG + chr8_1:62372562-62372581 Msa1205850:three_prime_UTR 35.0%
! GAAGATGTGTTTTCATGTCA+TGG - chr8_1:62372605-62372624 None:intergenic 35.0%
ACGTACTGTTGTCAGTAATT+TGG + chr8_1:62372699-62372718 Msa1205850:three_prime_UTR 35.0%
CGTACTGTTGTCAGTAATTT+GGG + chr8_1:62372700-62372719 Msa1205850:three_prime_UTR 35.0%
GTACTGTTGTCAGTAATTTG+GGG + chr8_1:62372701-62372720 Msa1205850:three_prime_UTR 35.0%
! ATTTAGGGCAACATAAAGCA+CGG - chr8_1:62372734-62372753 None:intergenic 35.0%
TAAAGTTGCGTGACAGTAAT+CGG + chr8_1:62372836-62372855 Msa1205850:three_prime_UTR 35.0%
TAGTTGTGAGAAACGCGTAT+CGG + chr8_1:62367173-62367192 Msa1205850:five_prime_UTR 40.0%
!! GAATGAATGTGTGGATTGGA+AGG - chr8_1:62367223-62367242 None:intergenic 40.0%
TCTGGAAAGGAATGAATGTG+TGG - chr8_1:62367232-62367251 None:intergenic 40.0%
AAGAAACGATGATGACTGTC+TGG - chr8_1:62367250-62367269 None:intergenic 40.0%
GCACCAAAACATTAACAGCA+TGG - chr8_1:62367734-62367753 None:intergenic 40.0%
TCAAGTGACATTGTGAGTAG+AGG + chr8_1:62367828-62367847 Msa1205850:five_prime_UTR 40.0%
GGTTGAATTCAGTAGAGCTT+CGG + chr8_1:62367952-62367971 Msa1205850:CDS 40.0%
! TTGATAATTTGCCCAAGGCT+TGG + chr8_1:62368071-62368090 Msa1205850:CDS 40.0%
ACTCCAAAAACAGGCAAGAA+AGG - chr8_1:62368110-62368129 None:intergenic 40.0%
TGATTGCTCGTAGAGTTTAC+AGG + chr8_1:62368157-62368176 Msa1205850:intron 40.0%
! GTAATTTGTGCCTGTGCTAA+TGG + chr8_1:62368249-62368268 Msa1205850:intron 40.0%
AATTTGTGCCTGTGCTAATG+GGG + chr8_1:62368251-62368270 Msa1205850:intron 40.0%
CTTTCCTGCAAGATTCACTT+AGG + chr8_1:62368391-62368410 Msa1205850:intron 40.0%
ATGACCTAAGTGAATCTTGC+AGG - chr8_1:62368398-62368417 None:intergenic 40.0%
GCAAGATTCACTTAGGTCAT+AGG + chr8_1:62368398-62368417 Msa1205850:intron 40.0%
TCACTTAGGTCATAGGAATC+AGG + chr8_1:62368405-62368424 Msa1205850:intron 40.0%
GAATGTAGGTGTGCTATAGT+CGG + chr8_1:62368512-62368531 Msa1205850:intron 40.0%
! CGGAAGCATGCTTCATTATT+TGG + chr8_1:62368532-62368551 Msa1205850:intron 40.0%
AATACAAAGGGGTCACTAGT+AGG - chr8_1:62368709-62368728 None:intergenic 40.0%
CCGATTGTGTATTCCATGTT+TGG + chr8_1:62368884-62368903 Msa1205850:intron 40.0%
TTGTGTATTCCATGTTTGGC+AGG + chr8_1:62368888-62368907 Msa1205850:intron 40.0%
TTACCTGTTCATTGGAGTTG+GGG + chr8_1:62368916-62368935 Msa1205850:CDS 40.0%
ATTGCATCTATGACACGGAA+TGG + chr8_1:62368971-62368990 Msa1205850:CDS 40.0%
AAACACAAACACACACGTAG+AGG - chr8_1:62369125-62369144 None:intergenic 40.0%
GAAATTCCAAGGGACAAAAC+TGG + chr8_1:62369364-62369383 Msa1205850:CDS 40.0%
!! AAATCTCCAGTTTTGTCCCT+TGG - chr8_1:62369373-62369392 None:intergenic 40.0%
! ACAACTTTCTGAGAGAGAAC+TGG + chr8_1:62369404-62369423 Msa1205850:CDS 40.0%
!! ATTGTGAAATGGGTTGCTCT+TGG + chr8_1:62369430-62369449 Msa1205850:CDS 40.0%
!! TTGTGAAATGGGTTGCTCTT+GGG + chr8_1:62369431-62369450 Msa1205850:CDS 40.0%
AATCAACTTGGCTGTATGGT+AGG - chr8_1:62369582-62369601 None:intergenic 40.0%
GTTGATTGTAACCAACATCC+TGG + chr8_1:62369595-62369614 Msa1205850:intron 40.0%
TGTAACAACTACCAGGATGT+TGG - chr8_1:62369609-62369628 None:intergenic 40.0%
GTGTAAGTGTAACAACTACC+AGG - chr8_1:62369616-62369635 None:intergenic 40.0%
GAAGAAGACAATGGTTAAGG+GGG + chr8_1:62369780-62369799 Msa1205850:intron 40.0%
!! TGTGCCGATTGTTATGCTTA+TGG + chr8_1:62370054-62370073 Msa1205850:intron 40.0%
CATCTTAGCCCTTATTGTTC+GGG + chr8_1:62370097-62370116 Msa1205850:CDS 40.0%
ATTTGCAGCCCGAACAATAA+GGG - chr8_1:62370108-62370127 None:intergenic 40.0%
TATTTGCAGCCCGAACAATA+AGG - chr8_1:62370109-62370128 None:intergenic 40.0%
TTATTGTTCGGGCTGCAAAT+AGG + chr8_1:62370108-62370127 Msa1205850:CDS 40.0%
GAAATGATGCATGGAGTACA+AGG + chr8_1:62370261-62370280 Msa1205850:CDS 40.0%
! AATCAATGGTGAAGCCCTTT+TGG + chr8_1:62370393-62370412 Msa1205850:intron 40.0%
! ATCAATGGTGAAGCCCTTTT+GGG + chr8_1:62370394-62370413 Msa1205850:intron 40.0%
TAAACCTCTTTGGCCCAAAA+GGG - chr8_1:62370410-62370429 None:intergenic 40.0%
ATAAACCTCTTTGGCCCAAA+AGG - chr8_1:62370411-62370430 None:intergenic 40.0%
AGTGATAAATTGTTGGCCCT+TGG + chr8_1:62370535-62370554 Msa1205850:intron 40.0%
GTGATAAATTGTTGGCCCTT+GGG + chr8_1:62370536-62370555 Msa1205850:intron 40.0%
CAAACTATTGCAAGTTCCCA+AGG - chr8_1:62370555-62370574 None:intergenic 40.0%
CTACATGATCCATTTGAGGA+TGG + chr8_1:62370906-62370925 Msa1205850:intron 40.0%
AGGACTGCCCAAATCTTATA+AGG - chr8_1:62371386-62371405 None:intergenic 40.0%
AAAAGCAAGCTCAAAAGGTG+AGG - chr8_1:62371412-62371431 None:intergenic 40.0%
!! TCACCTTTTGAGCTTGCTTT+TGG + chr8_1:62371411-62371430 Msa1205850:intron 40.0%
!! CACCTTTTGAGCTTGCTTTT+GGG + chr8_1:62371412-62371431 Msa1205850:intron 40.0%
!! ACCTTTTGAGCTTGCTTTTG+GGG + chr8_1:62371413-62371432 Msa1205850:intron 40.0%
!!! CTTGCTTTTGGGGTTGAATT+TGG + chr8_1:62371423-62371442 Msa1205850:intron 40.0%
!!! GTCCATCAGCACACTTTTTT+TGG + chr8_1:62371523-62371542 Msa1205850:intron 40.0%
! TCCCAAAAAAAGTGTGCTGA+TGG - chr8_1:62371528-62371547 None:intergenic 40.0%
ACTAGATACTCCAAAGATGG+AGG - chr8_1:62371589-62371608 None:intergenic 40.0%
GCACTTTATCCTATGAAGCA+CGG + chr8_1:62371691-62371710 Msa1205850:intron 40.0%
AACCCAAAAAGTAGCTCAAG+AGG + chr8_1:62371897-62371916 Msa1205850:intron 40.0%
GTAGCTCAAGAGGTAAGAAT+TGG + chr8_1:62371907-62371926 Msa1205850:intron 40.0%
AGAATTGGCCAAACCGTATA+AGG + chr8_1:62371922-62371941 Msa1205850:intron 40.0%
GGATCTAGGTAGTTAGTATC+TGG + chr8_1:62371964-62371983 Msa1205850:intron 40.0%
TATACAACATGGGTGCGATA+TGG - chr8_1:62371991-62372010 None:intergenic 40.0%
TGAGAAACGCGTATCGGATA+AGG + chr8_1:62367179-62367198 Msa1205850:five_prime_UTR 45.0%
GAGAAACGCGTATCGGATAA+GGG + chr8_1:62367180-62367199 Msa1205850:five_prime_UTR 45.0%
ACGATGATGACTGTCTGGAA+AGG - chr8_1:62367245-62367264 None:intergenic 45.0%
AGTGACATTGTGAGTAGAGG+AGG + chr8_1:62367831-62367850 Msa1205850:five_prime_UTR 45.0%
ACATTGTGAGTAGAGGAGGA+TGG + chr8_1:62367835-62367854 Msa1205850:exon 45.0%
GGGATATGGGATTTATCTGC+TGG + chr8_1:62367931-62367950 Msa1205850:CDS 45.0%
ACTTGGTCGACCTATGCTTA+TGG + chr8_1:62368024-62368043 Msa1205850:CDS 45.0%
AGAGGCAAAGCCATAAGCAT+AGG - chr8_1:62368037-62368056 None:intergenic 45.0%
CAGCATTCATACCAAGCCTT+GGG - chr8_1:62368085-62368104 None:intergenic 45.0%
! GCTCCTTTCTTGCCTGTTTT+TGG + chr8_1:62368104-62368123 Msa1205850:intron 45.0%
ACTACACACTGGATATGGGT+TGG + chr8_1:62368644-62368663 Msa1205850:intron 45.0%
TCTATCTGAGTTCGCCCTAA+TGG + chr8_1:62368792-62368811 Msa1205850:intron 45.0%
TCTAGAAGGATACACAGCTC+AGG - chr8_1:62369003-62369022 None:intergenic 45.0%
ACAAACACACACGTAGAGGA+GGG - chr8_1:62369121-62369140 None:intergenic 45.0%
GGTGTTAGGTAAGTAGGGTA+CGG - chr8_1:62369973-62369992 None:intergenic 45.0%
GTACCCTACTTACCTAACAC+CGG + chr8_1:62369972-62369991 Msa1205850:intron 45.0%
TACCCTACTTACCTAACACC+GGG + chr8_1:62369973-62369992 Msa1205850:intron 45.0%
! ATCCCGGTGTTAGGTAAGTA+GGG - chr8_1:62369978-62369997 None:intergenic 45.0%
! AATCCCGGTGTTAGGTAAGT+AGG - chr8_1:62369979-62369998 None:intergenic 45.0%
! CTTACCTAACACCGGGATTT+TGG + chr8_1:62369980-62369999 Msa1205850:intron 45.0%
TCTATTGAGCAAAGGCTGAC+GGG - chr8_1:62370183-62370202 None:intergenic 45.0%
GTCTATTGAGCAAAGGCTGA+CGG - chr8_1:62370184-62370203 None:intergenic 45.0%
GTTCCAGCAGAAATGATGCA+TGG + chr8_1:62370252-62370271 Msa1205850:CDS 45.0%
ACTCCATGCATCATTTCTGC+TGG - chr8_1:62370258-62370277 None:intergenic 45.0%
ATGCATGGAGTACAAGGATG+AGG + chr8_1:62370267-62370286 Msa1205850:CDS 45.0%
TGCATGGAGTACAAGGATGA+GGG + chr8_1:62370268-62370287 Msa1205850:CDS 45.0%
!! AGAGTGACTTGACTTGGTTG+TGG + chr8_1:62370868-62370887 Msa1205850:intron 45.0%
!! GAGTGACTTGACTTGGTTGT+GGG + chr8_1:62370869-62370888 Msa1205850:intron 45.0%
ACTTGGTTGTGGGATGTTAG+TGG + chr8_1:62370879-62370898 Msa1205850:intron 45.0%
CATGATCCATTTGAGGATGG+TGG + chr8_1:62370909-62370928 Msa1205850:intron 45.0%
CAATCACCACCATCCTCAAA+TGG - chr8_1:62370918-62370937 None:intergenic 45.0%
GGTATGTGGACAAATGCAAG+TGG - chr8_1:62371290-62371309 None:intergenic 45.0%
GGTCAAATCTCTAGGTGATG+TGG - chr8_1:62371355-62371374 None:intergenic 45.0%
AAGCTCAAAAGGTGAGGATG+AGG - chr8_1:62371406-62371425 None:intergenic 45.0%
ACCCCAAAAGCAAGCTCAAA+AGG - chr8_1:62371417-62371436 None:intergenic 45.0%
ACTCCAAAGATGGAGGAACA+CGG - chr8_1:62371582-62371601 None:intergenic 45.0%
CGTTCAAGATGAACCTTAGG+CGG - chr8_1:62371651-62371670 None:intergenic 45.0%
GGACGTTCAAGATGAACCTT+AGG - chr8_1:62371654-62371673 None:intergenic 45.0%
!! TCCTCATTTTAGGTGTGTCC+CGG + chr8_1:62371718-62371737 Msa1205850:intron 45.0%
!! TATTATCGGTGTCGACGTGT+CGG + chr8_1:62371809-62371828 Msa1205850:intron 45.0%
! GCATGATGTCCTTTTTGCGT+TGG + chr8_1:62372124-62372143 Msa1205850:intron 45.0%
ACAATCCATCCGAGTCACAA+AGG + chr8_1:62372383-62372402 Msa1205850:CDS 45.0%
TTGCTGGAACCTTTGTGACT+CGG - chr8_1:62372395-62372414 None:intergenic 45.0%
CTGGTTGTGAGTTTACTTGC+TGG - chr8_1:62372411-62372430 None:intergenic 45.0%
GCTACGGAGTGATCACATTA+TGG - chr8_1:62372455-62372474 None:intergenic 45.0%
!! CTTTGAAATTCAGCCAGCTG+TGG - chr8_1:62372477-62372496 None:intergenic 45.0%
TGTTGTGGGCAATGAAGTTG+AGG + chr8_1:62372502-62372521 Msa1205850:three_prime_UTR 45.0%
!! AAATAAATAAATTTCTTATA+TGG + chr8_1:62371089-62371108 Msa1205850:intron 5.0%
! AGTAGAGGAGGATGGCTTGT+AGG + chr8_1:62367843-62367862 Msa1205850:exon 50.0%
! GTAGAGGAGGATGGCTTGTA+GGG + chr8_1:62367844-62367863 Msa1205850:exon 50.0%
! TAGAGGAGGATGGCTTGTAG+GGG + chr8_1:62367845-62367864 Msa1205850:exon 50.0%
CATACTGACCATTACCGGTC+TGG + chr8_1:62367901-62367920 Msa1205850:CDS 50.0%
ATTACCGGTCTGGCAATGGT+GGG + chr8_1:62367911-62367930 Msa1205850:CDS 50.0%
ATATCCCACCATTGCCAGAC+CGG - chr8_1:62367918-62367937 None:intergenic 50.0%
! GTCTGGCAATGGTGGGATAT+GGG + chr8_1:62367918-62367937 Msa1205850:CDS 50.0%
GCAGCATTCATACCAAGCCT+TGG - chr8_1:62368086-62368105 None:intergenic 50.0%
CACAAACACACACGTAGAGG+AGG - chr8_1:62369122-62369141 None:intergenic 50.0%
CTCTCCAAAATCCCGGTGTT+AGG - chr8_1:62369987-62370006 None:intergenic 50.0%
!! CTAACACCGGGATTTTGGAG+AGG + chr8_1:62369985-62370004 Msa1205850:intron 50.0%
TGTGTGCCTCTCCAAAATCC+CGG - chr8_1:62369994-62370013 None:intergenic 50.0%
! CCAGCTGGTCTATTGAGCAA+AGG - chr8_1:62370191-62370210 None:intergenic 50.0%
CCTTTGCTCAATAGACCAGC+TGG + chr8_1:62370188-62370207 Msa1205850:CDS 50.0%
GGATCAGTTGTGCCTGTAAC+TGG - chr8_1:62370230-62370249 None:intergenic 50.0%
GCATCATTTCTGCTGGAACG+TGG - chr8_1:62370251-62370270 None:intergenic 50.0%
GAGTACAAGGATGAGGGAGA+AGG + chr8_1:62370274-62370293 Msa1205850:CDS 50.0%
!! GGTTGGGAATCTTTTGGGGA+GGG - chr8_1:62370480-62370499 None:intergenic 50.0%
! CAGCGGTTGGGAATCTTTTG+GGG - chr8_1:62370484-62370503 None:intergenic 50.0%
! CCAGCGGTTGGGAATCTTTT+GGG - chr8_1:62370485-62370504 None:intergenic 50.0%
ATCGGAGGAGACACTGCAAA+TGG - chr8_1:62371621-62371640 None:intergenic 50.0%
ACCTTAGGCGGAAGGTAGAT+CGG - chr8_1:62371639-62371658 None:intergenic 50.0%
CAAGATGAACCTTAGGCGGA+AGG - chr8_1:62371647-62371666 None:intergenic 50.0%
GTGCATATGGGCATGTGCAT+GGG - chr8_1:62371675-62371694 None:intergenic 50.0%
AGTGCATATGGGCATGTGCA+TGG - chr8_1:62371676-62371695 None:intergenic 50.0%
! GCACGGACACTCCTCATTTT+AGG + chr8_1:62371708-62371727 Msa1205850:intron 50.0%
ACCGGGACACACCTAAAATG+AGG - chr8_1:62371722-62371741 None:intergenic 50.0%
!! TTTTAGGTGTGTCCCGGTGT+CGG + chr8_1:62371724-62371743 Msa1205850:intron 50.0%
!! TACTGCAGAAGGAGCACCAT+TGG - chr8_1:62372337-62372356 None:intergenic 50.0%
ATGGTGCTCCTTCTGCAGTA+TGG + chr8_1:62372337-62372356 Msa1205850:intron 50.0%
TGGTGCTCCTTCTGCAGTAT+GGG + chr8_1:62372338-62372357 Msa1205850:intron 50.0%
TATCCAGCCCATACTGCAGA+AGG - chr8_1:62372348-62372367 None:intergenic 50.0%
!! GCAGTATGGGCTGGATACAT+CGG + chr8_1:62372351-62372370 Msa1205850:intron 50.0%
! TGGAACCTTTGTGACTCGGA+TGG - chr8_1:62372391-62372410 None:intergenic 50.0%
ACTCACAACCAGCTGAAGAG+AGG + chr8_1:62372419-62372438 Msa1205850:CDS 50.0%
AATTCAGCCAGCTGTGGCTA+CGG - chr8_1:62372471-62372490 None:intergenic 50.0%
! GATGGCTTGTAGGGGTTGCT+GGG + chr8_1:62367853-62367872 Msa1205850:exon 55.0%
GACCATTACCGGTCTGGCAA+TGG + chr8_1:62367907-62367926 Msa1205850:CDS 55.0%
CACCATTGCCAGACCGGTAA+TGG - chr8_1:62367912-62367931 None:intergenic 55.0%
CATTACCGGTCTGGCAATGG+TGG + chr8_1:62367910-62367929 Msa1205850:CDS 55.0%
! GGTCTGGCAATGGTGGGATA+TGG + chr8_1:62367917-62367936 Msa1205850:CDS 55.0%
TGTGCCTGTGCTAATGGGGT+AGG + chr8_1:62368255-62368274 Msa1205850:intron 55.0%
GTGCCTGTGCTAATGGGGTA+GGG + chr8_1:62368256-62368275 Msa1205850:intron 55.0%
TGCCTGTGCTAATGGGGTAG+GGG + chr8_1:62368257-62368276 Msa1205850:intron 55.0%
CTGCCCCAACTCCAATGAAC+AGG - chr8_1:62368922-62368941 None:intergenic 55.0%
ACACGTAGAGGAGGGAGAGA+AGG - chr8_1:62369113-62369132 None:intergenic 55.0%
GGTAAGTAGGGTACGGTGAG+AGG - chr8_1:62369966-62369985 None:intergenic 55.0%
GTAACTGGTACACCTGGTGC+AGG - chr8_1:62370215-62370234 None:intergenic 55.0%
GCACCAGGTGTACCAGTTAC+AGG + chr8_1:62370215-62370234 Msa1205850:CDS 55.0%
GTGCCTGTAACTGGTACACC+TGG - chr8_1:62370221-62370240 None:intergenic 55.0%
! GAAGCCCTTTTGGGCCAAAG+AGG + chr8_1:62370403-62370422 Msa1205850:intron 55.0%
!! CGGTTGGGAATCTTTTGGGG+AGG - chr8_1:62370481-62370500 None:intergenic 55.0%
CCCAAAAGATTCCCAACCGC+TGG + chr8_1:62370482-62370501 Msa1205850:intron 55.0%
! GCCAGCGGTTGGGAATCTTT+TGG - chr8_1:62370486-62370505 None:intergenic 55.0%
TTCTCGAGAAGGTGAGCCAG+CGG - chr8_1:62370501-62370520 None:intergenic 55.0%
GGACAGCGAGTCCACTGAAT+AGG - chr8_1:62371507-62371526 None:intergenic 55.0%
CCAAAGATGGAGGAACACGG+TGG - chr8_1:62371579-62371598 None:intergenic 55.0%
CCACCGTGTTCCTCCATCTT+TGG + chr8_1:62371576-62371595 Msa1205850:intron 55.0%
GGAGGAGACACTGCAAATGG+AGG - chr8_1:62371618-62371637 None:intergenic 55.0%
TTAGGCGGAAGGTAGATCGG+AGG - chr8_1:62371636-62371655 None:intergenic 55.0%
TCCGATCTACCTTCCGCCTA+AGG + chr8_1:62371635-62371654 Msa1205850:intron 55.0%
!! GAGGAGTGTCCGTGCTTCAT+AGG - chr8_1:62371703-62371722 None:intergenic 55.0%
! GGATGGCTTGTAGGGGTTGC+TGG + chr8_1:62367852-62367871 Msa1205850:exon 60.0%
GCCTGTGCTAATGGGGTAGG+GGG + chr8_1:62368258-62368277 Msa1205850:intron 60.0%
ACCCCCTACCCCATTAGCAC+AGG - chr8_1:62368262-62368281 None:intergenic 60.0%
CGTAGAGGAGGGAGAGAAGG+TGG - chr8_1:62369110-62369129 None:intergenic 60.0%
GAGAAGGTGAGCCAGCGGTT+GGG - chr8_1:62370496-62370515 None:intergenic 60.0%
GGAGGAACACGGTGGAAACC+AGG - chr8_1:62371571-62371590 None:intergenic 60.0%
ACCAACGTGTGTCCGACACC+GGG - chr8_1:62371739-62371758 None:intergenic 60.0%
CACCAACGTGTGTCCGACAC+CGG - chr8_1:62371740-62371759 None:intergenic 60.0%
GCTCCTTCTGCAGTATGGGC+TGG + chr8_1:62372342-62372361 Msa1205850:intron 60.0%
CAACGGCTCCTCTCTTCAGC+TGG - chr8_1:62372430-62372449 None:intergenic 60.0%
GATCACTCCGTAGCCACAGC+TGG + chr8_1:62372461-62372480 Msa1205850:exon 60.0%
AGACCAGCTGGACCTGCACC+AGG + chr8_1:62370200-62370219 Msa1205850:CDS 65.0%
ACACCTGGTGCAGGTCCAGC+TGG - chr8_1:62370206-62370225 None:intergenic 65.0%
CGAGAAGGTGAGCCAGCGGT+TGG - chr8_1:62370497-62370516 None:intergenic 65.0%
! TCCCGGTGTCGGACACACGT+TGG + chr8_1:62371735-62371754 Msa1205850:intron 65.0%
!! GGCTGACGGGCTTGCTGCCT+TGG - chr8_1:62370170-62370189 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 62367171 62372934 62367171 ID=Msa1205850;Name=Msa1205850
chr8_1 mRNA 62367171 62372934 62367171 ID=Msa1205850-mRNA-1;Parent=Msa1205850;Name=Msa1205850-mRNA-1;_AED=0.08;_eAED=0.08;_QI=257|1|1|1|0.66|0.57|7|472|280
chr8_1 exon 62367171 62367352 62367171 ID=Msa1205850-mRNA-1:exon:20231;Parent=Msa1205850-mRNA-1
chr8_1 exon 62367779 62368092 62367779 ID=Msa1205850-mRNA-1:exon:20232;Parent=Msa1205850-mRNA-1
chr8_1 exon 62368910 62369009 62368910 ID=Msa1205850-mRNA-1:exon:20233;Parent=Msa1205850-mRNA-1
chr8_1 exon 62369207 62369287 62369207 ID=Msa1205850-mRNA-1:exon:20234;Parent=Msa1205850-mRNA-1
chr8_1 exon 62369364 62369468 62369364 ID=Msa1205850-mRNA-1:exon:20235;Parent=Msa1205850-mRNA-1
chr8_1 exon 62370086 62370295 62370086 ID=Msa1205850-mRNA-1:exon:20236;Parent=Msa1205850-mRNA-1
chr8_1 exon 62372355 62372934 62372355 ID=Msa1205850-mRNA-1:exon:20237;Parent=Msa1205850-mRNA-1
chr8_1 five_prime_UTR 62367171 62367352 62367171 ID=Msa1205850-mRNA-1:five_prime_utr;Parent=Msa1205850-mRNA-1
chr8_1 five_prime_UTR 62367779 62367853 62367779 ID=Msa1205850-mRNA-1:five_prime_utr;Parent=Msa1205850-mRNA-1
chr8_1 CDS 62367854 62368092 62367854 ID=Msa1205850-mRNA-1:cds;Parent=Msa1205850-mRNA-1
chr8_1 CDS 62368910 62369009 62368910 ID=Msa1205850-mRNA-1:cds;Parent=Msa1205850-mRNA-1
chr8_1 CDS 62369207 62369287 62369207 ID=Msa1205850-mRNA-1:cds;Parent=Msa1205850-mRNA-1
chr8_1 CDS 62369364 62369468 62369364 ID=Msa1205850-mRNA-1:cds;Parent=Msa1205850-mRNA-1
chr8_1 CDS 62370086 62370295 62370086 ID=Msa1205850-mRNA-1:cds;Parent=Msa1205850-mRNA-1
chr8_1 CDS 62372355 62372462 62372355 ID=Msa1205850-mRNA-1:cds;Parent=Msa1205850-mRNA-1
chr8_1 three_prime_UTR 62372463 62372934 62372463 ID=Msa1205850-mRNA-1:three_prime_utr;Parent=Msa1205850-mRNA-1
Gene Sequence

>Msa1205850

ATGGCTTGTAGGGGTTGCTGGGAATGTCTGTTGAAGCTTTTGAACTTCATACTGACCATTACCGGTCTGGCAATGGTGGGATATGGGATTTATCTGCTGGTTGAATTCAGTAGAGCTTCGGATAATTCTGTGACGCTCTCTGCTGTCAGCGATGATCAAACTCTAGTTCAACTTGGTCGACCTATGCTTATGGCTTTGCCTCTTTCTGATAACATTTTTGATAATTTGCCCAAGGCTTGGTTTATTTACCTGTTCATTGGAGTTGGGGCAGTTCTCTTTGTCATTTCTTGTTTTGGTTGTATTGCATCTATGACACGGAATGGTTGCTGCCTGAGCTGTTATTCAGTTTTGGTGGTCTTGTTGATCTTAGTAGAGCTTGGATGTGCAGCCTTTATATTTTTTGACAAAAACTGGAAAGAGGAAATTCCAAGGGACAAAACTGGAGATTTTGATATGCTATACAACTTTCTGAGAGAGAACTGGACTATTGTGAAATGGGTTGCTCTTGGGATTGTTATCTTTGAGGCACTTCTTTTCATCTTAGCCCTTATTGTTCGGGCTGCAAATAGGCCAGTAGATTACGATAGTGATGAAGAGTTCATTAATCCAAGGCAGCAAGCCCGTCAGCCTTTGCTCAATAGACCAGCTGGACCTGCACCAGGTGTACCAGTTACAGGCACAACTGATCCACGTTCCAGCAGAAATGATGCATGGAGTACAAGGATGAGGGAGAAGTATGGGCTGGATACATCGGAATTCACATACAATCCATCCGAGTCACAAAGGTTCCAGCAAGTAAACTCACAACCAGCTGAAGAGAGGAGCCGTTGTACCATAATGTGA

Protein sequence

>Msa1205850

MACRGCWECLLKLLNFILTITGLAMVGYGIYLLVEFSRASDNSVTLSAVSDDQTLVQLGRPMLMALPLSDNIFDNLPKAWFIYLFIGVGAVLFVISCFGCIASMTRNGCCLSCYSVLVVLLILVELGCAAFIFFDKNWKEEIPRDKTGDFDMLYNFLRENWTIVKWVALGIVIFEALLFILALIVRAANRPVDYDSDEEFINPRQQARQPLLNRPAGPAPGVPVTGTTDPRSSRNDAWSTRMREKYGLDTSEFTYNPSESQRFQQVNSQPAEERSRCTIM*