Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1298050 | XP_013457573.1 | 100.000 | 213 | 0 | 0 | 1 | 213 | 1 | 213 | 7.15e-151 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1298050 | sp|O81445|CNBL1_ARATH | 79.812 | 213 | 43 | 0 | 1 | 213 | 1 | 213 | 1.16e-122 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1298050 | A0A072UP32 | 100.000 | 213 | 0 | 0 | 1 | 213 | 1 | 213 | 3.42e-151 | 427 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006880 | Msa1298050 | 0.823452 | 1.374342e-53 | -8.615850e-47 |
| Msa0029260 | Msa1298050 | 0.813677 | 2.267737e-51 | -8.615850e-47 |
| Msa0033880 | Msa1298050 | 0.831527 | 1.586812e-55 | -8.615850e-47 |
| Msa0043860 | Msa1298050 | 0.843504 | 1.345566e-58 | -8.615850e-47 |
| Msa0048180 | Msa1298050 | 0.800188 | 1.620046e-48 | -8.615850e-47 |
| Msa0055100 | Msa1298050 | 0.802698 | 4.959455e-49 | -8.615850e-47 |
| Msa0057610 | Msa1298050 | 0.813339 | 2.690693e-51 | -8.615850e-47 |
| Msa0061970 | Msa1298050 | 0.824383 | 8.315947e-54 | -8.615850e-47 |
| Msa0068000 | Msa1298050 | 0.817325 | 3.495681e-52 | -8.615850e-47 |
| Msa0068020 | Msa1298050 | 0.835127 | 2.010997e-56 | -8.615850e-47 |
| Msa0077010 | Msa1298050 | 0.800953 | 1.131290e-48 | -8.615850e-47 |
| Msa0101180 | Msa1298050 | 0.802487 | 5.480735e-49 | -8.615850e-47 |
| Msa0103240 | Msa1298050 | 0.803218 | 3.871380e-49 | -8.615850e-47 |
| Msa0113240 | Msa1298050 | 0.825370 | 4.865255e-54 | -8.615850e-47 |
| Msa0115370 | Msa1298050 | 0.802320 | 5.934297e-49 | -8.615850e-47 |
| Msa0609000 | Msa1298050 | 0.834504 | 2.884861e-56 | -8.615850e-47 |
| Msa0618930 | Msa1298050 | 0.809341 | 1.985335e-50 | -8.615850e-47 |
| Msa0619860 | Msa1298050 | 0.840478 | 8.489726e-58 | -8.615850e-47 |
| Msa0633570 | Msa1298050 | 0.843399 | 1.435199e-58 | -8.615850e-47 |
| Msa0666230 | Msa1298050 | 0.841197 | 5.497696e-58 | -8.615850e-47 |
| Msa0683780 | Msa1298050 | 0.816088 | 6.622316e-52 | -8.615850e-47 |
| Msa0693210 | Msa1298050 | 0.803595 | 3.234359e-49 | -8.615850e-47 |
| Msa0699190 | Msa1298050 | 0.816899 | 4.359673e-52 | -8.615850e-47 |
| Msa0705000 | Msa1298050 | 0.821872 | 3.203861e-53 | -8.615850e-47 |
| Msa0705040 | Msa1298050 | 0.822770 | 1.983207e-53 | -8.615850e-47 |
| Msa0706500 | Msa1298050 | 0.809101 | 2.234674e-50 | -8.615850e-47 |
| Msa0745200 | Msa1298050 | 0.802026 | 6.819973e-49 | -8.615850e-47 |
| Msa0781270 | Msa1298050 | 0.808250 | 3.396463e-50 | -8.615850e-47 |
| Msa0785130 | Msa1298050 | 0.813614 | 2.341320e-51 | -8.615850e-47 |
| Msa0819540 | Msa1298050 | 0.813312 | 2.728691e-51 | -8.615850e-47 |
| Msa0822180 | Msa1298050 | 0.802180 | 6.341071e-49 | -8.615850e-47 |
| Msa0127850 | Msa1298050 | 0.830999 | 2.139703e-55 | -8.615850e-47 |
| Msa0165950 | Msa1298050 | 0.801749 | 7.774641e-49 | -8.615850e-47 |
| Msa0166750 | Msa1298050 | 0.832246 | 1.054835e-55 | -8.615850e-47 |
| Msa0167480 | Msa1298050 | 0.806081 | 9.779012e-50 | -8.615850e-47 |
| Msa0169300 | Msa1298050 | 0.814059 | 1.868268e-51 | -8.615850e-47 |
| Msa0174000 | Msa1298050 | 0.824748 | 6.821148e-54 | -8.615850e-47 |
| Msa0181610 | Msa1298050 | 0.807415 | 5.112859e-50 | -8.615850e-47 |
| Msa0218830 | Msa1298050 | 0.819540 | 1.100968e-52 | -8.615850e-47 |
| Msa0224560 | Msa1298050 | 0.800440 | 1.439519e-48 | -8.615850e-47 |
| Msa0226330 | Msa1298050 | 0.808164 | 3.542419e-50 | -8.615850e-47 |
| Msa0231100 | Msa1298050 | 0.806580 | 7.675744e-50 | -8.615850e-47 |
| Msa1227690 | Msa1298050 | 0.833491 | 5.173594e-56 | -8.615850e-47 |
| Msa1234980 | Msa1298050 | 0.800594 | 1.339313e-48 | -8.615850e-47 |
| Msa1256770 | Msa1298050 | 0.971077 | 1.340972e-132 | -8.615850e-47 |
| Msa1294840 | Msa1298050 | 0.806602 | 7.596096e-50 | -8.615850e-47 |
| Msa1298050 | Msa1310690 | 0.807363 | 5.242870e-50 | -8.615850e-47 |
| Msa1298050 | Msa1329540 | 0.821658 | 3.591174e-53 | -8.615850e-47 |
| Msa1298050 | Msa1331250 | 0.847962 | 8.296812e-60 | -8.615850e-47 |
| Msa1298050 | Msa1331710 | 0.821687 | 3.536285e-53 | -8.615850e-47 |
| Msa1298050 | Msa1345450 | 0.809392 | 1.935517e-50 | -8.615850e-47 |
| Msa1298050 | Msa1349570 | 0.835997 | 1.210884e-56 | -8.615850e-47 |
| Msa1298050 | Msa1363860 | 0.808134 | 3.594783e-50 | -8.615850e-47 |
| Msa1298050 | Msa1369190 | 0.848755 | 5.006715e-60 | -8.615850e-47 |
| Msa1298050 | Msa1442850 | 0.815491 | 8.997883e-52 | -8.615850e-47 |
| Msa1298050 | Msa1450280 | 0.809702 | 1.660928e-50 | -8.615850e-47 |
| Msa1298050 | Msa1462860 | 0.841123 | 5.750737e-58 | -8.615850e-47 |
| Msa1298050 | Msa1465080 | 0.806316 | 8.728366e-50 | -8.615850e-47 |
| Msa0376820 | Msa1298050 | 0.814005 | 1.920409e-51 | -8.615850e-47 |
| Msa0384880 | Msa1298050 | 0.841746 | 3.942601e-58 | -8.615850e-47 |
| Msa0387470 | Msa1298050 | 0.802743 | 4.854259e-49 | -8.615850e-47 |
| Msa0389510 | Msa1298050 | 0.816901 | 4.355046e-52 | -8.615850e-47 |
| Msa0408240 | Msa1298050 | -0.812915 | 3.334600e-51 | -8.615850e-47 |
| Msa0423750 | Msa1298050 | 0.805880 | 1.078209e-49 | -8.615850e-47 |
| Msa0443390 | Msa1298050 | 0.819115 | 1.375770e-52 | -8.615850e-47 |
| Msa0472130 | Msa1298050 | 0.810889 | 9.207216e-51 | -8.615850e-47 |
| Msa0478580 | Msa1298050 | 0.812979 | 3.227763e-51 | -8.615850e-47 |
| Msa0481480 | Msa1298050 | 0.804546 | 2.050591e-49 | -8.615850e-47 |
| Msa0994290 | Msa1298050 | 0.829965 | 3.831592e-55 | -8.615850e-47 |
| Msa1025940 | Msa1298050 | 0.840738 | 7.256649e-58 | -8.615850e-47 |
| Msa1048690 | Msa1298050 | 0.814805 | 1.277790e-51 | -8.615850e-47 |
| Msa1072710 | Msa1298050 | 0.800178 | 1.627715e-48 | -8.615850e-47 |
| Msa1083880 | Msa1298050 | 0.821348 | 4.235698e-53 | -8.615850e-47 |
| Msa1085470 | Msa1298050 | 0.807305 | 5.392675e-50 | -8.615850e-47 |
| Msa0245060 | Msa1298050 | 0.858540 | 7.680851e-63 | -8.615850e-47 |
| Msa0245580 | Msa1298050 | 0.808627 | 2.822094e-50 | -8.615850e-47 |
| Msa0262480 | Msa1298050 | 0.808301 | 3.313027e-50 | -8.615850e-47 |
| Msa0266370 | Msa1298050 | 0.806246 | 9.027289e-50 | -8.615850e-47 |
| Msa0291520 | Msa1298050 | 0.821111 | 4.802491e-53 | -8.615850e-47 |
| Msa0296250 | Msa1298050 | 0.813130 | 2.990835e-51 | -8.615850e-47 |
| Msa0300350 | Msa1298050 | 0.818087 | 2.354048e-52 | -8.615850e-47 |
| Msa0304660 | Msa1298050 | 0.805981 | 1.026846e-49 | -8.615850e-47 |
| Msa0331700 | Msa1298050 | 0.805455 | 1.323922e-49 | -8.615850e-47 |
| Msa0348830 | Msa1298050 | 0.814490 | 1.500447e-51 | -8.615850e-47 |
| Msa0358770 | Msa1298050 | 0.819129 | 1.365813e-52 | -8.615850e-47 |
| Msa1115620 | Msa1298050 | 0.803763 | 2.985046e-49 | -8.615850e-47 |
| Msa1125500 | Msa1298050 | 0.810000 | 1.432771e-50 | -8.615850e-47 |
| Msa1135810 | Msa1298050 | -0.802347 | 5.856792e-49 | -8.615850e-47 |
| Msa1165780 | Msa1298050 | 0.801432 | 9.028097e-49 | -8.615850e-47 |
| Msa1166870 | Msa1298050 | 0.836504 | 9.003098e-57 | -8.615850e-47 |
| Msa1184370 | Msa1298050 | 0.826729 | 2.312702e-54 | -8.615850e-47 |
| Msa1202580 | Msa1298050 | 0.820028 | 8.516150e-53 | -8.615850e-47 |
| Msa1206650 | Msa1298050 | 0.801804 | 7.574422e-49 | -8.615850e-47 |
| Msa1208020 | Msa1298050 | 0.835330 | 1.787019e-56 | -8.615850e-47 |
| Msa0527150 | Msa1298050 | 0.812063 | 5.119525e-51 | -8.615850e-47 |
| Msa0534750 | Msa1298050 | 0.806880 | 6.633794e-50 | -8.615850e-47 |
| Msa0580230 | Msa1298050 | 0.823184 | 1.587511e-53 | -8.615850e-47 |
| Msa0580280 | Msa1298050 | 0.800171 | 1.633490e-48 | -8.615850e-47 |
| Msa0581070 | Msa1298050 | 0.800078 | 1.706198e-48 | -8.615850e-47 |
| Msa0593700 | Msa1298050 | 0.852152 | 5.569774e-61 | -8.615850e-47 |
| Msa0858440 | Msa1298050 | 0.819719 | 1.002127e-52 | -8.615850e-47 |
| Msa0895390 | Msa1298050 | 0.803390 | 3.567576e-49 | -8.615850e-47 |
| Msa0913240 | Msa1298050 | 0.806292 | 8.830360e-50 | -8.615850e-47 |
| Msa0921870 | Msa1298050 | 0.810449 | 1.146389e-50 | -8.615850e-47 |
| Msa0943170 | Msa1298050 | 0.844074 | 9.465657e-59 | -8.615850e-47 |
| Msa0945480 | Msa1298050 | 0.806990 | 6.288886e-50 | -8.615850e-47 |
| Msa0960830 | Msa1298050 | 0.858397 | 8.471141e-63 | -8.615850e-47 |
| Msa0963020 | Msa1298050 | 0.825593 | 4.307392e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1298050 | MtrunA17_Chr4g0055421 | 100.000 | 213 | 0 | 0 | 1 | 213 | 1 | 213 | 6.58e-155 | 427 |
| Msa1298050 | MtrunA17_Chr5g0446931 | 63.333 | 210 | 77 | 0 | 1 | 210 | 16 | 225 | 1.35e-94 | 275 |
| Msa1298050 | MtrunA17_Chr3g0102821 | 62.857 | 210 | 78 | 0 | 1 | 210 | 16 | 225 | 7.02e-94 | 273 |
| Msa1298050 | MtrunA17_Chr4g0076551 | 61.611 | 211 | 80 | 1 | 1 | 210 | 16 | 226 | 9.34e-94 | 273 |
| Msa1298050 | MtrunA17_Chr8g0388331 | 54.286 | 210 | 96 | 0 | 1 | 210 | 1 | 210 | 6.70e-86 | 253 |
| Msa1298050 | MtrunA17_Chr1g0151621 | 60.000 | 210 | 79 | 1 | 2 | 206 | 36 | 245 | 3.95e-84 | 249 |
| Msa1298050 | MtrunA17_Chr8g0346911 | 56.923 | 195 | 84 | 0 | 16 | 210 | 39 | 233 | 1.74e-79 | 237 |
| Msa1298050 | MtrunA17_Chr2g0290771 | 58.919 | 185 | 76 | 0 | 26 | 210 | 6 | 190 | 2.29e-77 | 230 |
| Msa1298050 | MtrunA17_Chr2g0290781 | 54.922 | 193 | 87 | 0 | 21 | 213 | 41 | 233 | 8.32e-71 | 215 |
| Msa1298050 | MtrunA17_Chr2g0290751 | 54.255 | 188 | 84 | 1 | 5 | 192 | 25 | 210 | 1.51e-68 | 209 |
| Msa1298050 | MtrunA17_Chr2g0290761 | 52.083 | 192 | 90 | 1 | 3 | 192 | 19 | 210 | 2.66e-67 | 206 |
| Msa1298050 | MtrunA17_Chr8g0341941 | 48.165 | 218 | 104 | 1 | 2 | 210 | 38 | 255 | 1.80e-66 | 205 |
| Msa1298050 | MtrunA17_Chr4g0063121 | 54.696 | 181 | 62 | 1 | 30 | 210 | 7 | 167 | 7.58e-61 | 189 |
| Msa1298050 | MtrunA17_Chr5g0399921 | 68.696 | 115 | 35 | 1 | 1 | 115 | 1 | 114 | 1.79e-51 | 162 |
| Msa1298050 | MtrunA17_Chr3g0126811 | 66.957 | 115 | 37 | 1 | 1 | 114 | 1 | 115 | 6.04e-50 | 158 |
| Msa1298050 | MtrunA17_Chr3g0126801 | 59.596 | 99 | 40 | 0 | 112 | 210 | 6 | 104 | 9.45e-39 | 130 |
| Msa1298050 | MtrunA17_Chr8g0388321 | 47.826 | 138 | 44 | 3 | 1 | 129 | 46 | 164 | 1.25e-33 | 118 |
| Msa1298050 | MtrunA17_Chr5g0399931 | 64.935 | 77 | 26 | 1 | 132 | 208 | 1 | 76 | 3.24e-26 | 96.7 |
| Msa1298050 | MtrunA17_Chr8g0388311 | 49.367 | 79 | 40 | 0 | 132 | 210 | 1 | 79 | 9.17e-22 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1298050 | AT4G17615.4 | 79.812 | 213 | 43 | 0 | 1 | 213 | 1 | 213 | 1.18e-123 | 348 |
| Msa1298050 | AT4G17615.1 | 79.812 | 213 | 43 | 0 | 1 | 213 | 1 | 213 | 1.18e-123 | 348 |
| Msa1298050 | AT4G17615.5 | 79.812 | 213 | 43 | 0 | 1 | 213 | 1 | 213 | 1.18e-123 | 348 |
| Msa1298050 | AT5G47100.1 | 78.873 | 213 | 45 | 0 | 1 | 213 | 1 | 213 | 1.89e-121 | 343 |
| Msa1298050 | AT4G17615.3 | 78.894 | 199 | 42 | 0 | 1 | 199 | 1 | 199 | 2.00e-112 | 322 |
| Msa1298050 | AT5G24270.4 | 60.465 | 215 | 81 | 1 | 1 | 211 | 1 | 215 | 3.13e-92 | 270 |
| Msa1298050 | AT5G24270.1 | 60.465 | 215 | 81 | 1 | 1 | 211 | 1 | 215 | 3.13e-92 | 270 |
| Msa1298050 | AT5G24270.2 | 60.465 | 215 | 81 | 1 | 1 | 211 | 1 | 215 | 3.13e-92 | 270 |
| Msa1298050 | AT5G55990.1 | 61.905 | 210 | 80 | 0 | 1 | 210 | 16 | 225 | 4.00e-92 | 269 |
| Msa1298050 | AT5G55990.2 | 61.905 | 210 | 80 | 0 | 1 | 210 | 16 | 225 | 4.00e-92 | 269 |
| Msa1298050 | AT4G26570.1 | 61.538 | 208 | 80 | 0 | 3 | 210 | 18 | 225 | 5.43e-92 | 269 |
| Msa1298050 | AT4G17615.2 | 80.000 | 160 | 32 | 0 | 54 | 213 | 12 | 171 | 2.07e-90 | 263 |
| Msa1298050 | AT4G26570.2 | 60.377 | 212 | 80 | 1 | 3 | 210 | 18 | 229 | 7.47e-90 | 264 |
| Msa1298050 | AT5G47100.2 | 79.114 | 158 | 33 | 0 | 1 | 158 | 1 | 158 | 2.00e-88 | 258 |
| Msa1298050 | AT5G24270.5 | 62.032 | 187 | 71 | 0 | 25 | 211 | 4 | 190 | 2.40e-83 | 246 |
| Msa1298050 | AT4G33000.2 | 53.589 | 209 | 96 | 1 | 3 | 210 | 38 | 246 | 9.35e-80 | 239 |
| Msa1298050 | AT1G64480.2 | 52.885 | 208 | 98 | 0 | 3 | 210 | 7 | 214 | 1.00e-79 | 238 |
| Msa1298050 | AT1G64480.3 | 52.885 | 208 | 98 | 0 | 3 | 210 | 7 | 214 | 1.00e-79 | 238 |
| Msa1298050 | AT1G64480.1 | 52.885 | 208 | 98 | 0 | 3 | 210 | 7 | 214 | 1.00e-79 | 238 |
| Msa1298050 | AT4G33000.1 | 53.589 | 209 | 96 | 1 | 3 | 210 | 48 | 256 | 1.70e-79 | 238 |
| Msa1298050 | AT4G16350.2 | 53.365 | 208 | 90 | 2 | 1 | 208 | 17 | 217 | 1.30e-73 | 222 |
| Msa1298050 | AT4G16350.1 | 53.365 | 208 | 90 | 2 | 1 | 208 | 17 | 217 | 1.30e-73 | 222 |
| Msa1298050 | AT1G64480.4 | 53.403 | 191 | 89 | 0 | 3 | 193 | 7 | 197 | 8.10e-73 | 219 |
| Msa1298050 | AT5G24270.3 | 59.259 | 162 | 66 | 0 | 50 | 211 | 7 | 168 | 3.66e-68 | 207 |
| Msa1298050 | AT4G01420.1 | 49.268 | 205 | 99 | 2 | 1 | 203 | 1 | 202 | 8.51e-63 | 194 |
| Msa1298050 | AT4G01420.2 | 49.231 | 195 | 94 | 2 | 1 | 193 | 1 | 192 | 3.40e-59 | 184 |
| Msa1298050 | AT4G26560.1 | 47.120 | 191 | 88 | 2 | 33 | 210 | 23 | 213 | 8.91e-58 | 182 |
| Msa1298050 | AT4G33000.4 | 50.968 | 155 | 75 | 1 | 3 | 156 | 38 | 192 | 9.52e-53 | 168 |
| Msa1298050 | AT4G33000.6 | 50.968 | 155 | 75 | 1 | 3 | 156 | 38 | 192 | 9.52e-53 | 168 |
| Msa1298050 | AT4G33000.5 | 51.299 | 154 | 74 | 1 | 3 | 155 | 38 | 191 | 1.25e-52 | 169 |
| Msa1298050 | AT4G33000.3 | 46.087 | 115 | 61 | 1 | 3 | 116 | 38 | 152 | 4.60e-31 | 111 |
Find 51 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAACCAACCAACCATAAA+TGG | 0.142317 | 8_3:-58694293 | Msa1298050:exon |
| GAGTTGAAACAGCCCATTTA+TGG | 0.177439 | 8_3:+58694280 | None:intergenic |
| TATTGAGAGTACACAACTTT+AGG | 0.272421 | 8_3:-58691040 | Msa1298050:three_prime_UTR |
| TCTCAAATTATTAAGAGAAT+TGG | 0.282078 | 8_3:-58691016 | Msa1298050:three_prime_UTR |
| CTCTATGATTTGCACAATAC+TGG | 0.282366 | 8_3:-58691901 | Msa1298050:CDS |
| TTCCCAGGATACTGTCTTGT+TGG | 0.314753 | 8_3:+58694253 | None:intergenic |
| TTGAGAGCAAACACAGCTTT+AGG | 0.337250 | 8_3:-58691072 | Msa1298050:exon |
| TGTCTTCTAGCGCTGCGTTT+GGG | 0.352671 | 8_3:+58692043 | None:intergenic |
| AGAGAATAGGTAGGTGTAAA+GGG | 0.353640 | 8_3:+58695037 | None:intergenic |
| TTGTCTTCTAGCGCTGCGTT+TGG | 0.360612 | 8_3:+58692042 | None:intergenic |
| AAGAAAATATCTTTGCAAAT+CGG | 0.363808 | 8_3:-58692808 | Msa1298050:CDS |
| TAGAGAATAGGTAGGTGTAA+AGG | 0.369955 | 8_3:+58695036 | None:intergenic |
| AGCAGTTCTGTTGTTGATGA+TGG | 0.399714 | 8_3:-58693024 | Msa1298050:CDS |
| AGAAAATATCTTTGCAAATC+GGG | 0.419742 | 8_3:-58692807 | Msa1298050:intron |
| TTTGCAGGAAGAATTTCAAT+TGG | 0.442118 | 8_3:-58692852 | Msa1298050:intron |
| TGTTTCTACTCGCTGCTAGC+TGG | 0.446596 | 8_3:-58695003 | Msa1298050:intron |
| AATTATTAAGAGAATTGGAT+TGG | 0.448012 | 8_3:-58691011 | Msa1298050:three_prime_UTR |
| AAATTACAGCTCACTGAGAA+AGG | 0.463323 | 8_3:+58690928 | None:intergenic |
| CTAACCAACCAACCATAAAT+GGG | 0.464315 | 8_3:-58694292 | Msa1298050:exon |
| TTAGAATTAAATACAAAACT+TGG | 0.466958 | 8_3:+58691113 | None:intergenic |
| CGAGTCTGAAATGAAGTTGG+CGG | 0.474982 | 8_3:-58691618 | Msa1298050:CDS |
| GAAGAGAATATCGAGATTCA+CGG | 0.481923 | 8_3:+58695127 | None:intergenic |
| TAAATCAGGTAAACCTGCAC+TGG | 0.495318 | 8_3:-58694336 | Msa1298050:intron |
| GGAAAAGACATGGAGTAACT+TGG | 0.495805 | 8_3:+58690867 | None:intergenic |
| TTTCGAGTCTGAAATGAAGT+TGG | 0.499107 | 8_3:-58691621 | Msa1298050:CDS |
| GTCTGTGATGCAAGAATCAC+GGG | 0.534660 | 8_3:+58694223 | None:intergenic |
| TATGGTTGGTTGGTTAGCAA+AGG | 0.535900 | 8_3:+58694298 | None:intergenic |
| ACAGCCCATTTATGGTTGGT+TGG | 0.536611 | 8_3:+58694288 | None:intergenic |
| TCGATCTATTTGATGTCAAG+AGG | 0.539889 | 8_3:-58692116 | Msa1298050:CDS |
| CTTAAATATAATAACAAGCA+TGG | 0.544078 | 8_3:+58690951 | None:intergenic |
| AAGCCAACAAGACAGTATCC+TGG | 0.544762 | 8_3:-58694256 | Msa1298050:CDS |
| TAGAATTAAATACAAAACTT+GGG | 0.546002 | 8_3:+58691114 | None:intergenic |
| ATCACGGGATCCTCTTTCCC+AGG | 0.546051 | 8_3:+58694238 | None:intergenic |
| AGCCAACAAGACAGTATCCT+GGG | 0.547133 | 8_3:-58694255 | Msa1298050:CDS |
| AAGACAGTATCCTGGGAAAG+AGG | 0.548655 | 8_3:-58694248 | Msa1298050:CDS |
| TGAAACAGCCCATTTATGGT+TGG | 0.556522 | 8_3:+58694284 | None:intergenic |
| GTTCAGCACATACCTTAGGT+AGG | 0.559209 | 8_3:+58691242 | None:intergenic |
| TCATGACACTTCCCTACCTA+AGG | 0.559648 | 8_3:-58691254 | Msa1298050:intron |
| GATGCTGACCTGAACCAAGA+TGG | 0.563451 | 8_3:-58691336 | Msa1298050:CDS |
| TCTATTTGATGTCAAGAGGA+AGG | 0.564171 | 8_3:-58692112 | Msa1298050:CDS |
| CTTCTAGCGCTGCGTTTGGG+TGG | 0.565868 | 8_3:+58692046 | None:intergenic |
| GCAGTTCTGTTGTTGATGAT+GGG | 0.573252 | 8_3:-58693023 | Msa1298050:CDS |
| TTCAGCACATACCTTAGGTA+GGG | 0.583317 | 8_3:+58691243 | None:intergenic |
| AAGTGAGGTAGAGAATAGGT+AGG | 0.588376 | 8_3:+58695028 | None:intergenic |
| AGTCTGTGATGCAAGAATCA+CGG | 0.593687 | 8_3:+58694222 | None:intergenic |
| CTATTTGATGTCAAGAGGAA+GGG | 0.600172 | 8_3:-58692111 | Msa1298050:CDS |
| GTTGGTTAGCAAAGGATGCA+CGG | 0.601757 | 8_3:+58694306 | None:intergenic |
| GCACGGTACAGAACCAGTGC+AGG | 0.604665 | 8_3:+58694323 | None:intergenic |
| TGATGATGGGCTAATAAGCA+AGG | 0.637084 | 8_3:-58693010 | Msa1298050:intron |
| GATAGAAACAATTCTAGACA+AGG | 0.686128 | 8_3:-58691588 | Msa1298050:intron |
| TGGCTTTATAGAGCGTCCAG+AGG | 0.712213 | 8_3:-58691881 | Msa1298050:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAATAAAATTAAAA+AGG | + | chr8_3:58690910-58690929 | None:intergenic | 0.0% |
| !!! | ATTGATTTTTTAAAACAATT+TGG | + | chr8_3:58691099-58691118 | None:intergenic | 10.0% |
| !! | TATAATGATATATTTAAATC+AGG | - | chr8_3:58691414-58691433 | Msa1298050:intron | 10.0% |
| !!! | AATTTTTTTCATAAAGTAAA+CGG | + | chr8_3:58691752-58691771 | None:intergenic | 10.0% |
| !! | TAAAAATTTGTAAAAGAAAA+TGG | - | chr8_3:58691958-58691977 | Msa1298050:intron | 10.0% |
| !!! | ATAATTGCTAATTTTAATTT+TGG | + | chr8_3:58693195-58693214 | None:intergenic | 10.0% |
| !!! | ATTTTATATCTAATATTCTA+TGG | + | chr8_3:58694265-58694284 | None:intergenic | 10.0% |
| !! | AAATACTTGAAATATTAAAA+GGG | + | chr8_3:58695122-58695141 | None:intergenic | 10.0% |
| !! | TAAATACTTGAAATATTAAA+AGG | + | chr8_3:58695123-58695142 | None:intergenic | 10.0% |
| !! | AACAACTAAAAAAAAAAAGA+AGG | + | chr8_3:58690823-58690842 | None:intergenic | 15.0% |
| !!! | TTTTGATCTTATTTTTACTA+GGG | - | chr8_3:58690844-58690863 | Msa1298050:intron | 15.0% |
| !!! | ATTTTTTTCATAAAGTAAAC+GGG | + | chr8_3:58691751-58691770 | None:intergenic | 15.0% |
| !!! | TTGTTTTAAAATTGTTAACA+AGG | - | chr8_3:58691804-58691823 | Msa1298050:intron | 15.0% |
| !! | TTTCAAAATTTATGAAATGT+TGG | - | chr8_3:58691927-58691946 | Msa1298050:intron | 15.0% |
| !! | GAAAAAACAACAATATTATT+TGG | + | chr8_3:58692323-58692342 | None:intergenic | 15.0% |
| !!! | TTTATTTTTCTTTTTTGAGT+GGG | - | chr8_3:58693297-58693316 | Msa1298050:intron | 15.0% |
| !! | TCATAGTTTATATATAATGT+AGG | - | chr8_3:58693453-58693472 | Msa1298050:intron | 15.0% |
| !! | AATTACAAACATAATATATC+AGG | + | chr8_3:58693823-58693842 | None:intergenic | 15.0% |
| !! | TAGAATTAAATACAAAACTT+GGG | + | chr8_3:58694653-58694672 | None:intergenic | 15.0% |
| !! | TTAGAATTAAATACAAAACT+TGG | + | chr8_3:58694654-58694673 | None:intergenic | 15.0% |
| !!! | TTTTCCTTGTATTTTTAATA+TGG | - | chr8_3:58694914-58694933 | Msa1298050:intron | 15.0% |
| !!! | TTTCCTTGTATTTTTAATAT+GGG | - | chr8_3:58694915-58694934 | Msa1298050:intron | 15.0% |
| !! | CTAAAAAAAAAAAGAAGGAA+TGG | + | chr8_3:58690818-58690837 | None:intergenic | 20.0% |
| !!! | CTTTTGATCTTATTTTTACT+AGG | - | chr8_3:58690843-58690862 | Msa1298050:intron | 20.0% |
| !! | AGAGAAAATTAAAATAATGC+CGG | + | chr8_3:58691229-58691248 | None:intergenic | 20.0% |
| !! | TGATTTGATATAATCTTGTA+TGG | - | chr8_3:58691282-58691301 | Msa1298050:CDS | 20.0% |
| !!! | CTTTAATTTTGTGTAGTTAT+TGG | - | chr8_3:58691590-58691609 | Msa1298050:CDS | 20.0% |
| !! | TAACGATAATGATATAACTA+AGG | - | chr8_3:58691724-58691743 | Msa1298050:intron | 20.0% |
| !!! | TTTTTTTCATAAAGTAAACG+GGG | + | chr8_3:58691750-58691769 | None:intergenic | 20.0% |
| !! | GACATGTAATAACTTAATAA+GGG | - | chr8_3:58692133-58692152 | Msa1298050:intron | 20.0% |
| !!! | TTTGAATGCATAGTTTTAAA+TGG | + | chr8_3:58692446-58692465 | None:intergenic | 20.0% |
| !! | AAATGAACAAAAATGTTATC+TGG | + | chr8_3:58692833-58692852 | None:intergenic | 20.0% |
| !!! | GATAACATTTTTGTTCATTT+TGG | - | chr8_3:58692833-58692852 | Msa1298050:CDS | 20.0% |
| !! | AAGAAAATATCTTTGCAAAT+CGG | - | chr8_3:58692956-58692975 | Msa1298050:intron | 20.0% |
| !!! | ATTGCTAATTTTAATTTTGG+TGG | + | chr8_3:58693192-58693211 | None:intergenic | 20.0% |
| !! | TTAACTTAGAAATAGAAACA+TGG | - | chr8_3:58693235-58693254 | Msa1298050:intron | 20.0% |
| !!! | GTTTATTTTTCTTTTTTGAG+TGG | - | chr8_3:58693296-58693315 | Msa1298050:intron | 20.0% |
| !!! | TTATTTTTCTTTTTTGAGTG+GGG | - | chr8_3:58693298-58693317 | Msa1298050:intron | 20.0% |
| !! | AAATAAATAAGAAAGTTGCA+AGG | + | chr8_3:58693534-58693553 | None:intergenic | 20.0% |
| !!! | CAACTTTCTTATTTATTTCT+TGG | - | chr8_3:58693536-58693555 | Msa1298050:intron | 20.0% |
| !!! | AAAAAGTTATTTCACAAGAA+TGG | + | chr8_3:58693575-58693594 | None:intergenic | 20.0% |
| !!! | AAATAACTTTTTCAATTGAC+TGG | - | chr8_3:58693583-58693602 | Msa1298050:intron | 20.0% |
| !! | AATACAAACATAAAATTCAG+TGG | + | chr8_3:58693964-58693983 | None:intergenic | 20.0% |
| !! | ATAGTTTGAACATCATAATA+TGG | + | chr8_3:58694580-58694599 | None:intergenic | 20.0% |
| !!! | TTTTGTATTTAATTCTAACG+TGG | - | chr8_3:58694656-58694675 | Msa1298050:intron | 20.0% |
| !! | TCTCAAATTATTAAGAGAAT+TGG | - | chr8_3:58694748-58694767 | Msa1298050:intron | 20.0% |
| !! | AATTATTAAGAGAATTGGAT+TGG | - | chr8_3:58694753-58694772 | Msa1298050:intron | 20.0% |
| !! | CTTAAATATAATAACAAGCA+TGG | + | chr8_3:58694816-58694835 | None:intergenic | 20.0% |
| !! | TTTCCCATATTAAAAATACA+AGG | + | chr8_3:58694921-58694940 | None:intergenic | 20.0% |
| !! | AGAGAAAAAAGAAGTGTAAA+GGG | + | chr8_3:58690690-58690709 | None:intergenic | 25.0% |
| !! | AAGAGAAAAAAGAAGTGTAA+AGG | + | chr8_3:58690691-58690710 | None:intergenic | 25.0% |
| ! | AAAAAAAGAAGGAATGGAAA+TGG | + | chr8_3:58690812-58690831 | None:intergenic | 25.0% |
| ! | ATTCTATTGTGCAATTTGAT+TGG | - | chr8_3:58690936-58690955 | Msa1298050:three_prime_UTR | 25.0% |
| ! | TTCTATTGTGCAATTTGATT+GGG | - | chr8_3:58690937-58690956 | Msa1298050:three_prime_UTR | 25.0% |
| ! | TGATTGTTTCATCTTCATAA+AGG | - | chr8_3:58690981-58691000 | Msa1298050:three_prime_UTR | 25.0% |
| ! | GATTGTTTCATCTTCATAAA+GGG | - | chr8_3:58690982-58691001 | Msa1298050:three_prime_UTR | 25.0% |
| ! | GTCAGAAATGAATAATTGAT+CGG | + | chr8_3:58691181-58691200 | None:intergenic | 25.0% |
| ! | TATGTTATGGTGTTTCAATT+TGG | - | chr8_3:58691366-58691385 | Msa1298050:intron | 25.0% |
| ! | ATGTTATGGTGTTTCAATTT+GGG | - | chr8_3:58691367-58691386 | Msa1298050:intron | 25.0% |
| !! | TTTGAGTTTATATGCTTATG+AGG | - | chr8_3:58691649-58691668 | Msa1298050:CDS | 25.0% |
| ! | AATGTAAATTCACAATAAGC+AGG | + | chr8_3:58691676-58691695 | None:intergenic | 25.0% |
| ! | GCTTATTGTGAATTTACATT+TGG | - | chr8_3:58691676-58691695 | Msa1298050:intron | 25.0% |
| ! | TAAAATTGTTAACAAGGAGA+TGG | - | chr8_3:58691810-58691829 | Msa1298050:intron | 25.0% |
| ! | ATTTGTAAAAGAAAATGGTG+AGG | - | chr8_3:58691963-58691982 | Msa1298050:intron | 25.0% |
| ! | AAATGAAAAACATGAAGCAT+TGG | - | chr8_3:58692030-58692049 | Msa1298050:intron | 25.0% |
| !! | TTTGGTTTATTGTTAGAAGT+AGG | - | chr8_3:58692102-58692121 | Msa1298050:CDS | 25.0% |
| ! | GGACATGTAATAACTTAATA+AGG | - | chr8_3:58692132-58692151 | Msa1298050:intron | 25.0% |
| ! | TCTGTGAGTATATAAATGTT+TGG | - | chr8_3:58692241-58692260 | Msa1298050:intron | 25.0% |
| ! | AATGGAAAATAATTGTTTGC+AGG | + | chr8_3:58692386-58692405 | None:intergenic | 25.0% |
| ! | ACAAAAATGTTATCTGGATT+AGG | + | chr8_3:58692827-58692846 | None:intergenic | 25.0% |
| ! | TTTAACCTGTAATGTGATTA+TGG | - | chr8_3:58692879-58692898 | Msa1298050:intron | 25.0% |
| ! | TTAACCTGTAATGTGATTAT+GGG | - | chr8_3:58692880-58692899 | Msa1298050:intron | 25.0% |
| ! | AGAAAATATCTTTGCAAATC+GGG | - | chr8_3:58692957-58692976 | Msa1298050:intron | 25.0% |
| !!! | TATTTTTCTTTTTTGAGTGG+GGG | - | chr8_3:58693299-58693318 | Msa1298050:intron | 25.0% |
| !!! | GAGCAATAATTTTTTTCTTG+AGG | - | chr8_3:58693332-58693351 | Msa1298050:intron | 25.0% |
| ! | ACTATGAAGTTGACAAATAT+TGG | + | chr8_3:58693440-58693459 | None:intergenic | 25.0% |
| ! | ATTTCTATCTTCAAAGAAAC+CGG | + | chr8_3:58693497-58693516 | None:intergenic | 25.0% |
| ! | ATTTAAAGAAGACGAAAAAG+AGG | + | chr8_3:58694346-58694365 | None:intergenic | 25.0% |
| !!! | TCTTTTTCGTCTTCTTTAAA+TGG | - | chr8_3:58694345-58694364 | Msa1298050:intron | 25.0% |
| ! | AAAAAAGCAATGTCTAACTA+AGG | + | chr8_3:58694389-58694408 | None:intergenic | 25.0% |
| !!! | TTAGACATTGCTTTTTTTTC+TGG | - | chr8_3:58694392-58694411 | Msa1298050:intron | 25.0% |
| ! | AAAAATACAAGGAAAAGACA+TGG | + | chr8_3:58694910-58694929 | None:intergenic | 25.0% |
| ! | AAGGGAATTATTACCATAAA+AGG | + | chr8_3:58695054-58695073 | None:intergenic | 25.0% |
| !! | ATGGTAATAATTCCCTTTTA+TGG | - | chr8_3:58695057-58695076 | Msa1298050:five_prime_UTR | 25.0% |
| GGTTGAAAAATCTTAACTCA+AGG | - | chr8_3:58691003-58691022 | Msa1298050:three_prime_UTR | 30.0% | |
| AATTATTCATTTCTGACACG+CGG | - | chr8_3:58691184-58691203 | Msa1298050:intron | 30.0% | |
| TTTGTGTAGTTATTGGATTG+TGG | - | chr8_3:58691597-58691616 | Msa1298050:CDS | 30.0% | |
| TTGTGTAGTTATTGGATTGT+GGG | - | chr8_3:58691598-58691617 | Msa1298050:CDS | 30.0% | |
| GAAAATGGTGAGGAATATAT+TGG | - | chr8_3:58691973-58691992 | Msa1298050:intron | 30.0% | |
| CTTACGTTTACTAATTCAAG+TGG | - | chr8_3:58692007-58692026 | Msa1298050:intron | 30.0% | |
| !! | CATGAAGCATTGGAAATAAA+TGG | - | chr8_3:58692040-58692059 | Msa1298050:CDS | 30.0% |
| TTATTGTTAGAAGTAGGCAA+AGG | - | chr8_3:58692108-58692127 | Msa1298050:CDS | 30.0% | |
| !! | GTTTTAAATGGAAGAGAAAG+CGG | + | chr8_3:58692434-58692453 | None:intergenic | 30.0% |
| ACTTGTCAGTTCATTTGTTT+CGG | - | chr8_3:58692497-58692516 | Msa1298050:intron | 30.0% | |
| TAACAAATCCATTGCAAGAT+GGG | + | chr8_3:58692599-58692618 | None:intergenic | 30.0% | |
| ATAACAAATCCATTGCAAGA+TGG | + | chr8_3:58692600-58692619 | None:intergenic | 30.0% | |
| !! | ATCTTGCAATGGATTTGTTA+TGG | - | chr8_3:58692599-58692618 | Msa1298050:intron | 30.0% |
| ! | TAAACCTGTGTAGCAAATTT+TGG | - | chr8_3:58692664-58692683 | Msa1298050:intron | 30.0% |
| ! | AAAATGTTATCTGGATTAGG+AGG | + | chr8_3:58692824-58692843 | None:intergenic | 30.0% |
| AATACCCATAATCACATTAC+AGG | + | chr8_3:58692887-58692906 | None:intergenic | 30.0% | |
| TTTGCAGGAAGAATTTCAAT+TGG | - | chr8_3:58692912-58692931 | Msa1298050:intron | 30.0% | |
| TCGACTCTCATAGTAAAAAT+AGG | - | chr8_3:58693080-58693099 | Msa1298050:intron | 30.0% | |
| !!! | TGTGCGCTTTTTTTTTACTA+GGG | + | chr8_3:58693107-58693126 | None:intergenic | 30.0% |
| !!! | TTGTGCGCTTTTTTTTTACT+AGG | + | chr8_3:58693108-58693127 | None:intergenic | 30.0% |
| TTTCTATCTTCAAAGAAACC+GGG | + | chr8_3:58693496-58693515 | None:intergenic | 30.0% | |
| AATTTCTGACATCGTATCAA+TGG | + | chr8_3:58693613-58693632 | None:intergenic | 30.0% | |
| TTAAGGTACACAACAATAAG+TGG | + | chr8_3:58693777-58693796 | None:intergenic | 30.0% | |
| AGATCAAAGTGAGGAATTTA+AGG | + | chr8_3:58693794-58693813 | None:intergenic | 30.0% | |
| GATAGAAACAATTCTAGACA+AGG | - | chr8_3:58694176-58694195 | Msa1298050:intron | 30.0% | |
| !! | CAATGTCTATTTTTCCATCT+TGG | + | chr8_3:58694445-58694464 | None:intergenic | 30.0% |
| GAAAAATAGACATTGTTGAG+TGG | - | chr8_3:58694450-58694469 | Msa1298050:intron | 30.0% | |
| ! | TATGTGCTGAACTATTTTCA+TGG | - | chr8_3:58694533-58694552 | Msa1298050:intron | 30.0% |
| !!! | TTGTTTTTGTCATTGATGCA+GGG | - | chr8_3:58694611-58694630 | Msa1298050:intron | 30.0% |
| ! | TATTGAGAGTACACAACTTT+AGG | - | chr8_3:58694724-58694743 | Msa1298050:intron | 30.0% |
| !! | CTCATTGAAATTTTTCAGTC+AGG | - | chr8_3:58694871-58694890 | Msa1298050:intron | 30.0% |
| TTAATATGGGAAATGCTAAC+CGG | - | chr8_3:58694928-58694947 | Msa1298050:intron | 30.0% | |
| ACTGGTTAAGGATATGAAAA+AGG | - | chr8_3:58694963-58694982 | Msa1298050:intron | 30.0% | |
| ! | TCAAAAGCAGTTTCCTTTTA+TGG | - | chr8_3:58695038-58695057 | Msa1298050:five_prime_UTR | 30.0% |
| TGGTTAAGCATACCATAAAA+GGG | + | chr8_3:58695072-58695091 | None:intergenic | 30.0% | |
| GAAGAGAATATCGAGATTCA+CGG | + | chr8_3:58690640-58690659 | None:intergenic | 35.0% | |
| AGAGAATAGGTAGGTGTAAA+GGG | + | chr8_3:58690730-58690749 | None:intergenic | 35.0% | |
| TAGAGAATAGGTAGGTGTAA+AGG | + | chr8_3:58690731-58690750 | None:intergenic | 35.0% | |
| CAAAAAGTGAGGTAGAGAAT+AGG | + | chr8_3:58690743-58690762 | None:intergenic | 35.0% | |
| ATTGATCGGTATGACAACAT+GGG | + | chr8_3:58691167-58691186 | None:intergenic | 35.0% | |
| AATTGATCGGTATGACAACA+TGG | + | chr8_3:58691168-58691187 | None:intergenic | 35.0% | |
| ! | ATGGTGTTTCAATTTGGGTT+TGG | - | chr8_3:58691372-58691391 | Msa1298050:intron | 35.0% |
| ! | GTTTCAATTTGGGTTTGGAT+TGG | - | chr8_3:58691377-58691396 | Msa1298050:intron | 35.0% |
| CTAACCAACCAACCATAAAT+GGG | - | chr8_3:58691472-58691491 | Msa1298050:intron | 35.0% | |
| CAATTGTGATACAGACGATA+TGG | - | chr8_3:58691849-58691868 | Msa1298050:intron | 35.0% | |
| ! | GAATGCATTTTCAGAGACAA+TGG | - | chr8_3:58691887-58691906 | Msa1298050:CDS | 35.0% |
| TGGAAACTGGCAATAACTTA+GGG | + | chr8_3:58692067-58692086 | None:intergenic | 35.0% | |
| TTGGAAACTGGCAATAACTT+AGG | + | chr8_3:58692068-58692087 | None:intergenic | 35.0% | |
| ATATCATATGACAGCAGGTT+AGG | + | chr8_3:58692159-58692178 | None:intergenic | 35.0% | |
| GAGATATATCATATGACAGC+AGG | + | chr8_3:58692164-58692183 | None:intergenic | 35.0% | |
| TCTCAACATGAGCTAAATGA+AGG | - | chr8_3:58692180-58692199 | Msa1298050:intron | 35.0% | |
| TGTCTTTCTTCTACTCATTG+TGG | - | chr8_3:58692285-58692304 | Msa1298050:intron | 35.0% | |
| AAAATGTTCCCATCTTGCAA+TGG | - | chr8_3:58692588-58692607 | Msa1298050:intron | 35.0% | |
| !! | GAAACCAAAATTTGCTACAC+AGG | + | chr8_3:58692671-58692690 | None:intergenic | 35.0% |
| TATGGGTATTCTTTCTTTGC+AGG | - | chr8_3:58692897-58692916 | Msa1298050:intron | 35.0% | |
| TTGACAAATATTGGAGCCAT+AGG | + | chr8_3:58693431-58693450 | None:intergenic | 35.0% | |
| !!! | GCTTTATTTTTCTCATCTCC+CGG | - | chr8_3:58693475-58693494 | Msa1298050:intron | 35.0% |
| ACAAGAATGGCATATAATGC+TGG | + | chr8_3:58693562-58693581 | None:intergenic | 35.0% | |
| TCGATCTATTTGATGTCAAG+AGG | - | chr8_3:58693648-58693667 | Msa1298050:intron | 35.0% | |
| TCTATTTGATGTCAAGAGGA+AGG | - | chr8_3:58693652-58693671 | Msa1298050:intron | 35.0% | |
| CTATTTGATGTCAAGAGGAA+GGG | - | chr8_3:58693653-58693672 | Msa1298050:intron | 35.0% | |
| ! | ATTTTCCTGCAGTCTCATTT+AGG | - | chr8_3:58693840-58693859 | Msa1298050:intron | 35.0% |
| ! | CTCTATGATTTGCACAATAC+TGG | - | chr8_3:58693863-58693882 | Msa1298050:intron | 35.0% |
| AATAATCATCATCTCACCTC+TGG | + | chr8_3:58693902-58693921 | None:intergenic | 35.0% | |
| ! | CACAACGAAAGTTTTCACTT+AGG | + | chr8_3:58693987-58694006 | None:intergenic | 35.0% |
| CTAAGTGAAAACTTTCGTTG+TGG | - | chr8_3:58693985-58694004 | Msa1298050:intron | 35.0% | |
| !! | TCGCTTTTCTTTCCCTTATT+TGG | - | chr8_3:58694081-58694100 | Msa1298050:intron | 35.0% |
| TGTCAGACATCACCAAATAA+GGG | + | chr8_3:58694096-58694115 | None:intergenic | 35.0% | |
| ! | TTTCGAGTCTGAAATGAAGT+TGG | - | chr8_3:58694143-58694162 | Msa1298050:intron | 35.0% |
| CAATTCTAGACAAGGTATGT+TGG | - | chr8_3:58694184-58694203 | Msa1298050:intron | 35.0% | |
| AACAATATTTCTTCTGCAGG+TGG | + | chr8_3:58694294-58694313 | None:intergenic | 35.0% | |
| AGCAACAATATTTCTTCTGC+AGG | + | chr8_3:58694297-58694316 | None:intergenic | 35.0% | |
| !! | CTATTTTTCCATCTTGGTTC+AGG | + | chr8_3:58694439-58694458 | None:intergenic | 35.0% |
| ! | GTCATGATTTTGAGCAATGA+AGG | + | chr8_3:58694497-58694516 | None:intergenic | 35.0% |
| AATAGTTCAGCACATACCTT+AGG | + | chr8_3:58694529-58694548 | None:intergenic | 35.0% | |
| !!! | GTTGTTTTTGTCATTGATGC+AGG | - | chr8_3:58694610-58694629 | Msa1298050:intron | 35.0% |
| AAATTACAGCTCACTGAGAA+AGG | + | chr8_3:58694839-58694858 | None:intergenic | 35.0% | |
| CTGGTTAAGCATACCATAAA+AGG | + | chr8_3:58695073-58695092 | None:intergenic | 35.0% | |
| AAGTGAGGTAGAGAATAGGT+AGG | + | chr8_3:58690739-58690758 | None:intergenic | 40.0% | |
| GCGAGTAGAAACAAAAAGTG+AGG | + | chr8_3:58690754-58690773 | None:intergenic | 40.0% | |
| TAAATCAGGTAAACCTGCAC+TGG | - | chr8_3:58691428-58691447 | Msa1298050:intron | 40.0% | |
| ! | TATGGTTGGTTGGTTAGCAA+AGG | + | chr8_3:58691469-58691488 | None:intergenic | 40.0% |
| GCTAACCAACCAACCATAAA+TGG | - | chr8_3:58691471-58691490 | Msa1298050:intron | 40.0% | |
| TGAAACAGCCCATTTATGGT+TGG | + | chr8_3:58691483-58691502 | None:intergenic | 40.0% | |
| GAGTTGAAACAGCCCATTTA+TGG | + | chr8_3:58691487-58691506 | None:intergenic | 40.0% | |
| AGTCTGTGATGCAAGAATCA+CGG | + | chr8_3:58691545-58691564 | None:intergenic | 40.0% | |
| AAGTGAACTGTCTTGGAAAC+TGG | + | chr8_3:58692080-58692099 | None:intergenic | 40.0% | |
| CCAAACAAAGTGAACTGTCT+TGG | + | chr8_3:58692087-58692106 | None:intergenic | 40.0% | |
| CCAAGACAGTTCACTTTGTT+TGG | - | chr8_3:58692084-58692103 | Msa1298050:CDS | 40.0% | |
| TTGTTAGAAGTAGGCAAAGG+TGG | - | chr8_3:58692111-58692130 | Msa1298050:CDS | 40.0% | |
| TGTCAGTTCATTTGTTTCGG+TGG | - | chr8_3:58692500-58692519 | Msa1298050:intron | 40.0% | |
| GTGGCTCAATTGAAATTGCT+TGG | - | chr8_3:58692519-58692538 | Msa1298050:intron | 40.0% | |
| ! | AGCAGTTCTGTTGTTGATGA+TGG | - | chr8_3:58692740-58692759 | Msa1298050:intron | 40.0% |
| !! | GCAGTTCTGTTGTTGATGAT+GGG | - | chr8_3:58692741-58692760 | Msa1298050:intron | 40.0% |
| !! | TGATGATGGGCTAATAAGCA+AGG | - | chr8_3:58692754-58692773 | Msa1298050:intron | 40.0% |
| !!! | TTTTCTTTTTTGAGTGGGGG+TGG | - | chr8_3:58693302-58693321 | Msa1298050:intron | 40.0% |
| !!! | TTTCTTTTTTGAGTGGGGGT+GGG | - | chr8_3:58693303-58693322 | Msa1298050:intron | 40.0% |
| AGGTACACAACAATAAGTGG+AGG | + | chr8_3:58693774-58693793 | None:intergenic | 40.0% | |
| GAAAACTTTCGTTGTGGTCT+TGG | - | chr8_3:58693991-58694010 | Msa1298050:intron | 40.0% | |
| CTGTCAGACATCACCAAATA+AGG | + | chr8_3:58694097-58694116 | None:intergenic | 40.0% | |
| !! | CTTATTTGGTGATGTCTGAC+AGG | - | chr8_3:58694095-58694114 | Msa1298050:intron | 40.0% |
| AAAAGAGGTCAAACACAGCT+TGG | + | chr8_3:58694331-58694350 | None:intergenic | 40.0% | |
| !! | TTTTTCTGGCCAGACTTTCT+TGG | - | chr8_3:58694406-58694425 | Msa1298050:intron | 40.0% |
| TTCAGCACATACCTTAGGTA+GGG | + | chr8_3:58694524-58694543 | None:intergenic | 40.0% | |
| TTGAGAGCAAACACAGCTTT+AGG | - | chr8_3:58694692-58694711 | Msa1298050:intron | 40.0% | |
| GGAAAAGACATGGAGTAACT+TGG | + | chr8_3:58694900-58694919 | None:intergenic | 40.0% | |
| ATTAAAAGGGTCCTGCTAAC+TGG | + | chr8_3:58695109-58695128 | None:intergenic | 40.0% | |
| GTTGGTTAGCAAAGGATGCA+CGG | + | chr8_3:58691461-58691480 | None:intergenic | 45.0% | |
| ACAGCCCATTTATGGTTGGT+TGG | + | chr8_3:58691479-58691498 | None:intergenic | 45.0% | |
| AAGCCAACAAGACAGTATCC+TGG | - | chr8_3:58691508-58691527 | Msa1298050:intron | 45.0% | |
| AGCCAACAAGACAGTATCCT+GGG | - | chr8_3:58691509-58691528 | Msa1298050:intron | 45.0% | |
| TTCCCAGGATACTGTCTTGT+TGG | + | chr8_3:58691514-58691533 | None:intergenic | 45.0% | |
| AAGACAGTATCCTGGGAAAG+AGG | - | chr8_3:58691516-58691535 | Msa1298050:intron | 45.0% | |
| GTCTGTGATGCAAGAATCAC+GGG | + | chr8_3:58691544-58691563 | None:intergenic | 45.0% | |
| ! | TGGTTGATGTGGTGACACAA+TGG | + | chr8_3:58692404-58692423 | None:intergenic | 45.0% |
| !! | GAAGAGAAAGCGGCTTTTTC+TGG | + | chr8_3:58692424-58692443 | None:intergenic | 45.0% |
| TCTCTGCAAGCATGTCAACA+AGG | - | chr8_3:58693035-58693054 | Msa1298050:CDS | 45.0% | |
| !!! | TTCTTTTTTGAGTGGGGGTG+GGG | - | chr8_3:58693304-58693323 | Msa1298050:intron | 45.0% |
| ! | TTCTTGAGGCCCATCACTTT+TGG | - | chr8_3:58693346-58693365 | Msa1298050:intron | 45.0% |
| !! | TCTTGAGGCCCATCACTTTT+GGG | - | chr8_3:58693347-58693366 | Msa1298050:intron | 45.0% |
| TCTTTGCACTCCCCAAAGAA+CGG | - | chr8_3:58693389-58693408 | Msa1298050:intron | 45.0% | |
| AGGACAGACAGATCAAAGTG+AGG | + | chr8_3:58693803-58693822 | None:intergenic | 45.0% | |
| TAGAGCCTAAATGAGACTGC+AGG | + | chr8_3:58693848-58693867 | None:intergenic | 45.0% | |
| ! | CGAGTCTGAAATGAAGTTGG+CGG | - | chr8_3:58694146-58694165 | Msa1298050:intron | 45.0% |
| TCATGACACTTCCCTACCTA+AGG | - | chr8_3:58694510-58694529 | Msa1298050:intron | 45.0% | |
| GTTCAGCACATACCTTAGGT+AGG | + | chr8_3:58694525-58694544 | None:intergenic | 45.0% | |
| !! | TTTATTAATATTATATGTTA+TGG | - | chr8_3:58691353-58691372 | Msa1298050:intron | 5.0% |
| ! | TGTTTCTACTCGCTGCTAGC+TGG | - | chr8_3:58690761-58690780 | Msa1298050:intron | 50.0% |
| !!! | GCGGCTTTTTCTGGTTGATG+TGG | + | chr8_3:58692415-58692434 | None:intergenic | 50.0% |
| AGCCTCCAGTTTCATAGGGA+CGG | + | chr8_3:58693061-58693080 | None:intergenic | 50.0% | |
| GTCGAGCCTCCAGTTTCATA+GGG | + | chr8_3:58693065-58693084 | None:intergenic | 50.0% | |
| AGTCGAGCCTCCAGTTTCAT+AGG | + | chr8_3:58693066-58693085 | None:intergenic | 50.0% | |
| CTGGACCTCCCAAAAGTGAT+GGG | + | chr8_3:58693358-58693377 | None:intergenic | 50.0% | |
| ACTGGACCTCCCAAAAGTGA+TGG | + | chr8_3:58693359-58693378 | None:intergenic | 50.0% | |
| !! | CACTTTTGGGAGGTCCAGTT+CGG | - | chr8_3:58693360-58693379 | Msa1298050:intron | 50.0% |
| TGCAAAGAGCTCAACCGAAC+TGG | + | chr8_3:58693377-58693396 | None:intergenic | 50.0% | |
| CCATAGGCAGTTGACATGCA+GGG | + | chr8_3:58693415-58693434 | None:intergenic | 50.0% | |
| TGTCTTCTAGCGCTGCGTTT+GGG | + | chr8_3:58693724-58693743 | None:intergenic | 50.0% | |
| TTGTCTTCTAGCGCTGCGTT+TGG | + | chr8_3:58693725-58693744 | None:intergenic | 50.0% | |
| !! | TGGCTTTATAGAGCGTCCAG+AGG | - | chr8_3:58693883-58693902 | Msa1298050:intron | 50.0% |
| GGTCAGCATCCAAGAAAGTC+TGG | + | chr8_3:58694418-58694437 | None:intergenic | 50.0% | |
| GATGCTGACCTGAACCAAGA+TGG | - | chr8_3:58694428-58694447 | Msa1298050:intron | 50.0% | |
| CGTCGAAAGCTTCTGACTGC+CGG | - | chr8_3:58691207-58691226 | Msa1298050:intron | 55.0% | |
| ATCACGGGATCCTCTTTCCC+AGG | + | chr8_3:58691529-58691548 | None:intergenic | 55.0% | |
| GGATTGTGGGCAGTTGCGAT+TGG | - | chr8_3:58691611-58691630 | Msa1298050:CDS | 55.0% | |
| CAAGGCCGTCCCTATGAAAC+TGG | - | chr8_3:58693053-58693072 | Msa1298050:CDS | 55.0% | |
| !! | TGAGGCCCATCACTTTTGGG+AGG | - | chr8_3:58693350-58693369 | Msa1298050:intron | 55.0% |
| ACATGCAGGGCCGTTCTTTG+GGG | + | chr8_3:58693402-58693421 | None:intergenic | 55.0% | |
| GACATGCAGGGCCGTTCTTT+GGG | + | chr8_3:58693403-58693422 | None:intergenic | 55.0% | |
| TGACATGCAGGGCCGTTCTT+TGG | + | chr8_3:58693404-58693423 | None:intergenic | 55.0% | |
| CCCTGCATGTCAACTGCCTA+TGG | - | chr8_3:58693412-58693431 | Msa1298050:intron | 55.0% | |
| GCCATAGGCAGTTGACATGC+AGG | + | chr8_3:58693416-58693435 | None:intergenic | 55.0% | |
| GAAATGCTAACCGGTGCCCA+CGG | - | chr8_3:58694937-58694956 | Msa1298050:intron | 55.0% | |
| AAATGCTAACCGGTGCCCAC+GGG | - | chr8_3:58694938-58694957 | Msa1298050:intron | 55.0% | |
| ATCCTTAACCAGTGCCCCGT+GGG | + | chr8_3:58694956-58694975 | None:intergenic | 55.0% | |
| TATCCTTAACCAGTGCCCCG+TGG | + | chr8_3:58694957-58694976 | None:intergenic | 55.0% | |
| GGTATGCTTAACCAGTGCCC+CGG | - | chr8_3:58695078-58695097 | Msa1298050:five_prime_UTR | 55.0% | |
| GTATGCTTAACCAGTGCCCC+GGG | - | chr8_3:58695079-58695098 | Msa1298050:five_prime_UTR | 55.0% | |
| TATGCTTAACCAGTGCCCCG+GGG | - | chr8_3:58695080-58695099 | Msa1298050:five_prime_UTR | 55.0% | |
| GCACGGTACAGAACCAGTGC+AGG | + | chr8_3:58691444-58691463 | None:intergenic | 60.0% | |
| GGCCGTCCCTATGAAACTGG+AGG | - | chr8_3:58693056-58693075 | Msa1298050:CDS | 60.0% | |
| CTTCTAGCGCTGCGTTTGGG+TGG | + | chr8_3:58693721-58693740 | None:intergenic | 60.0% | |
| AATGCTAACCGGTGCCCACG+GGG | - | chr8_3:58694939-58694958 | Msa1298050:intron | 60.0% | |
| ATGCTTAACCAGTGCCCCGG+GGG | - | chr8_3:58695081-58695100 | Msa1298050:five_prime_UTR | 60.0% | |
| !! | TGCCCACGGGGCACTGGTTA+AGG | - | chr8_3:58694951-58694970 | Msa1298050:intron | 65.0% |
| TCCTGCTAACTGGTGCCCCC+GGG | + | chr8_3:58695099-58695118 | None:intergenic | 65.0% | |
| GTCCTGCTAACTGGTGCCCC+CGG | + | chr8_3:58695100-58695119 | None:intergenic | 65.0% | |
| AACCAGTGCCCCGTGGGCAC+CGG | + | chr8_3:58694950-58694969 | None:intergenic | 70.0% | |
| CCTGCTAACTGGTGCCCCCG+GGG | + | chr8_3:58695098-58695117 | None:intergenic | 70.0% | |
| AACCGGTGCCCACGGGGCAC+TGG | - | chr8_3:58694945-58694964 | Msa1298050:intron | 75.0% | |
| AACTGGTGCCCCCGGGGCAC+TGG | + | chr8_3:58695092-58695111 | None:intergenic | 75.0% | |
| !! | CCCCGGGGGCACCAGTTAGC+AGG | - | chr8_3:58695095-58695114 | Msa1298050:five_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 58690622 | 58695164 | 58690622 | ID=Msa1298050;Name=Msa1298050 |
| chr8_3 | mRNA | 58690622 | 58695164 | 58690622 | ID=Msa1298050-mRNA-1;Parent=Msa1298050;Name=Msa1298050-mRNA-1;_AED=0.16;_eAED=0.16;_QI=215|1|1|1|0.77|0.6|10|273|213 |
| chr8_3 | exon | 58690622 | 58690655 | 58690622 | ID=Msa1298050-mRNA-1:exon:16905;Parent=Msa1298050-mRNA-1 |
| chr8_3 | exon | 58690852 | 58691154 | 58690852 | ID=Msa1298050-mRNA-1:exon:16904;Parent=Msa1298050-mRNA-1 |
| chr8_3 | exon | 58691255 | 58691367 | 58691255 | ID=Msa1298050-mRNA-1:exon:16903;Parent=Msa1298050-mRNA-1 |
| chr8_3 | exon | 58691589 | 58691669 | 58691589 | ID=Msa1298050-mRNA-1:exon:16902;Parent=Msa1298050-mRNA-1 |
| chr8_3 | exon | 58691882 | 58691934 | 58691882 | ID=Msa1298050-mRNA-1:exon:16901;Parent=Msa1298050-mRNA-1 |
| chr8_3 | exon | 58692034 | 58692142 | 58692034 | ID=Msa1298050-mRNA-1:exon:16900;Parent=Msa1298050-mRNA-1 |
| chr8_3 | exon | 58692808 | 58692867 | 58692808 | ID=Msa1298050-mRNA-1:exon:16899;Parent=Msa1298050-mRNA-1 |
| chr8_3 | exon | 58693011 | 58693093 | 58693011 | ID=Msa1298050-mRNA-1:exon:16898;Parent=Msa1298050-mRNA-1 |
| chr8_3 | exon | 58694218 | 58694350 | 58694218 | ID=Msa1298050-mRNA-1:exon:16897;Parent=Msa1298050-mRNA-1 |
| chr8_3 | exon | 58695004 | 58695164 | 58695004 | ID=Msa1298050-mRNA-1:exon:16896;Parent=Msa1298050-mRNA-1 |
| chr8_3 | five_prime_UTR | 58695004 | 58695164 | 58695004 | ID=Msa1298050-mRNA-1:five_prime_utr;Parent=Msa1298050-mRNA-1 |
| chr8_3 | five_prime_UTR | 58694297 | 58694350 | 58694297 | ID=Msa1298050-mRNA-1:five_prime_utr;Parent=Msa1298050-mRNA-1 |
| chr8_3 | CDS | 58694218 | 58694296 | 58694218 | ID=Msa1298050-mRNA-1:cds;Parent=Msa1298050-mRNA-1 |
| chr8_3 | CDS | 58693011 | 58693093 | 58693011 | ID=Msa1298050-mRNA-1:cds;Parent=Msa1298050-mRNA-1 |
| chr8_3 | CDS | 58692808 | 58692867 | 58692808 | ID=Msa1298050-mRNA-1:cds;Parent=Msa1298050-mRNA-1 |
| chr8_3 | CDS | 58692034 | 58692142 | 58692034 | ID=Msa1298050-mRNA-1:cds;Parent=Msa1298050-mRNA-1 |
| chr8_3 | CDS | 58691882 | 58691934 | 58691882 | ID=Msa1298050-mRNA-1:cds;Parent=Msa1298050-mRNA-1 |
| chr8_3 | CDS | 58691589 | 58691669 | 58691589 | ID=Msa1298050-mRNA-1:cds;Parent=Msa1298050-mRNA-1 |
| chr8_3 | CDS | 58691255 | 58691367 | 58691255 | ID=Msa1298050-mRNA-1:cds;Parent=Msa1298050-mRNA-1 |
| chr8_3 | CDS | 58691091 | 58691154 | 58691091 | ID=Msa1298050-mRNA-1:cds;Parent=Msa1298050-mRNA-1 |
| chr8_3 | three_prime_UTR | 58690852 | 58691090 | 58690852 | ID=Msa1298050-mRNA-1:three_prime_utr;Parent=Msa1298050-mRNA-1 |
| chr8_3 | three_prime_UTR | 58690622 | 58690655 | 58690622 | ID=Msa1298050-mRNA-1:three_prime_utr;Parent=Msa1298050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
