Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580950 | XP_013450667.1 | 100.000 | 110 | 0 | 0 | 1 | 110 | 1 | 110 | 4.96e-74 | 224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580950 | sp|Q8RV04|TI141_ARATH | 78.571 | 112 | 22 | 1 | 1 | 110 | 1 | 112 | 1.38e-61 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580950 | I3T234 | 100.000 | 110 | 0 | 0 | 1 | 110 | 1 | 110 | 2.37e-74 | 224 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004060 | Msa0580950 | 0.819905 | 9.084419e-53 | -8.615850e-47 |
| Msa0006880 | Msa0580950 | 0.856443 | 3.206381e-62 | -8.615850e-47 |
| Msa0027580 | Msa0580950 | 0.806360 | 8.544294e-50 | -8.615850e-47 |
| Msa0055150 | Msa0580950 | 0.845616 | 3.634733e-59 | -8.615850e-47 |
| Msa0057140 | Msa0580950 | 0.836883 | 7.208263e-57 | -8.615850e-47 |
| Msa0061970 | Msa0580950 | 0.812663 | 3.784850e-51 | -8.615850e-47 |
| Msa0075340 | Msa0580950 | 0.807100 | 5.959961e-50 | -8.615850e-47 |
| Msa0077010 | Msa0580950 | 0.801911 | 7.199846e-49 | -8.615850e-47 |
| Msa0090030 | Msa0580950 | 0.805123 | 1.553920e-49 | -8.615850e-47 |
| Msa0100800 | Msa0580950 | 0.827320 | 1.669915e-54 | -8.615850e-47 |
| Msa0104610 | Msa0580950 | 0.817246 | 3.641663e-52 | -8.615850e-47 |
| Msa0115500 | Msa0580950 | 0.813160 | 2.945720e-51 | -8.615850e-47 |
| Msa0131450 | Msa0580950 | 0.824412 | 8.188014e-54 | -8.615850e-47 |
| Msa0165950 | Msa0580950 | 0.811969 | 5.365923e-51 | -8.615850e-47 |
| Msa0166750 | Msa0580950 | 0.829318 | 5.503629e-55 | -8.615850e-47 |
| Msa0177230 | Msa0580950 | 0.819033 | 1.436082e-52 | -8.615850e-47 |
| Msa0182280 | Msa0580950 | 0.809037 | 2.306349e-50 | -8.615850e-47 |
| Msa0183460 | Msa0580950 | 0.839729 | 1.331156e-57 | -8.615850e-47 |
| Msa0186310 | Msa0580950 | 0.831719 | 1.423350e-55 | -8.615850e-47 |
| Msa0186770 | Msa0580950 | 0.808122 | 3.617157e-50 | -8.615850e-47 |
| Msa0384880 | Msa0580950 | 0.810566 | 1.081382e-50 | -8.615850e-47 |
| Msa0386040 | Msa0580950 | 0.819786 | 9.674914e-53 | -8.615850e-47 |
| Msa0387470 | Msa0580950 | 0.805108 | 1.565036e-49 | -8.615850e-47 |
| Msa0387910 | Msa0580950 | 0.815487 | 9.015169e-52 | -8.615850e-47 |
| Msa0392940 | Msa0580950 | 0.803467 | 3.438427e-49 | -8.615850e-47 |
| Msa0419520 | Msa0580950 | 0.844451 | 7.500441e-59 | -8.615850e-47 |
| Msa0439890 | Msa0580950 | 0.805508 | 1.290291e-49 | -8.615850e-47 |
| Msa0465550 | Msa0580950 | 0.806372 | 8.492224e-50 | -8.615850e-47 |
| Msa0239940 | Msa0580950 | 0.810629 | 1.048022e-50 | -8.615850e-47 |
| Msa0280430 | Msa0580950 | 0.806851 | 6.729695e-50 | -8.615850e-47 |
| Msa0291520 | Msa0580950 | 0.834258 | 3.325763e-56 | -8.615850e-47 |
| Msa0304660 | Msa0580950 | 0.801041 | 1.085583e-48 | -8.615850e-47 |
| Msa0308220 | Msa0580950 | 0.831724 | 1.419284e-55 | -8.615850e-47 |
| Msa0331700 | Msa0580950 | 0.801168 | 1.022472e-48 | -8.615850e-47 |
| Msa0493920 | Msa0580950 | 0.819385 | 1.194268e-52 | -8.615850e-47 |
| Msa0523680 | Msa0580950 | 0.820708 | 5.945364e-53 | -8.615850e-47 |
| Msa0527910 | Msa0580950 | 0.809095 | 2.240979e-50 | -8.615850e-47 |
| Msa0550540 | Msa0580950 | 0.807151 | 5.815367e-50 | -8.615850e-47 |
| Msa0550570 | Msa0580950 | 0.812900 | 3.358550e-51 | -8.615850e-47 |
| Msa0580950 | Msa0583510 | 0.803398 | 3.553979e-49 | -8.615850e-47 |
| Msa0580950 | Msa0607510 | 0.804468 | 2.129229e-49 | -8.615850e-47 |
| Msa0580950 | Msa0609000 | 0.853758 | 1.933376e-61 | -8.615850e-47 |
| Msa0580950 | Msa0610390 | 0.803136 | 4.026700e-49 | -8.615850e-47 |
| Msa0580950 | Msa0614990 | 0.807259 | 5.517133e-50 | -8.615850e-47 |
| Msa0580950 | Msa0618930 | 0.830927 | 2.228929e-55 | -8.615850e-47 |
| Msa0580950 | Msa0619180 | 0.803112 | 4.072879e-49 | -8.615850e-47 |
| Msa0580950 | Msa0619920 | 0.829292 | 5.585592e-55 | -8.615850e-47 |
| Msa0580950 | Msa0626680 | 0.806765 | 7.015950e-50 | -8.615850e-47 |
| Msa0580950 | Msa0651150 | 0.808932 | 2.429349e-50 | -8.615850e-47 |
| Msa0580950 | Msa0659140 | 0.836392 | 9.613786e-57 | -8.615850e-47 |
| Msa0580950 | Msa0687230 | 0.804347 | 2.256420e-49 | -8.615850e-47 |
| Msa0580950 | Msa0704800 | 0.835611 | 1.517493e-56 | -8.615850e-47 |
| Msa0580950 | Msa0705600 | 0.834134 | 3.571778e-56 | -8.615850e-47 |
| Msa0580950 | Msa0706390 | 0.816527 | 5.281028e-52 | -8.615850e-47 |
| Msa0580950 | Msa0707390 | 0.842783 | 2.093816e-58 | -8.615850e-47 |
| Msa0580950 | Msa0735310 | 0.823419 | 1.399034e-53 | -8.615850e-47 |
| Msa0580950 | Msa0774750 | 0.829386 | 5.299020e-55 | -8.615850e-47 |
| Msa0580950 | Msa0793390 | 0.802615 | 5.156964e-49 | -8.615850e-47 |
| Msa0580950 | Msa0805500 | 0.805784 | 1.129115e-49 | -8.615850e-47 |
| Msa0580950 | Msa0806920 | 0.829485 | 5.014980e-55 | -8.615850e-47 |
| Msa0580950 | Msa0817260 | 0.832492 | 9.164882e-56 | -8.615850e-47 |
| Msa0580950 | Msa0839200 | 0.804718 | 1.888512e-49 | -8.615850e-47 |
| Msa0580950 | Msa0879860 | 0.810176 | 1.312925e-50 | -8.615850e-47 |
| Msa0580950 | Msa0895310 | 0.801343 | 9.415038e-49 | -8.615850e-47 |
| Msa0580950 | Msa0901450 | 0.819740 | 9.909535e-53 | -8.615850e-47 |
| Msa0580950 | Msa0924150 | -0.813752 | 2.183690e-51 | -8.615850e-47 |
| Msa0580950 | Msa0933290 | 0.824196 | 9.199024e-54 | -8.615850e-47 |
| Msa0580950 | Msa0960830 | 0.813811 | 2.119105e-51 | -8.615850e-47 |
| Msa0580950 | Msa1001350 | 0.817724 | 2.842796e-52 | -8.615850e-47 |
| Msa0580950 | Msa1025940 | 0.852348 | 4.897448e-61 | -8.615850e-47 |
| Msa0580950 | Msa1029970 | 0.805097 | 1.573849e-49 | -8.615850e-47 |
| Msa0580950 | Msa1040800 | 0.813331 | 2.702169e-51 | -8.615850e-47 |
| Msa0580950 | Msa1073400 | 0.832977 | 6.946212e-56 | -8.615850e-47 |
| Msa0580950 | Msa1083880 | 0.805808 | 1.116460e-49 | -8.615850e-47 |
| Msa0580950 | Msa1089840 | 0.827628 | 1.408371e-54 | -8.615850e-47 |
| Msa0580950 | Msa1093330 | 0.824615 | 7.333069e-54 | -8.615850e-47 |
| Msa0580950 | Msa1122820 | 0.809022 | 2.323168e-50 | -8.615850e-47 |
| Msa0580950 | Msa1126120 | -0.800901 | 1.159387e-48 | -8.615850e-47 |
| Msa0580950 | Msa1126850 | 0.822152 | 2.759776e-53 | -8.615850e-47 |
| Msa0580950 | Msa1131170 | 0.815002 | 1.155387e-51 | -8.615850e-47 |
| Msa0580950 | Msa1135800 | -0.801468 | 8.877313e-49 | -8.615850e-47 |
| Msa0580950 | Msa1138870 | 0.803805 | 2.925348e-49 | -8.615850e-47 |
| Msa0580950 | Msa1166870 | 0.804545 | 2.052360e-49 | -8.615850e-47 |
| Msa0580950 | Msa1184370 | 0.808817 | 2.570909e-50 | -8.615850e-47 |
| Msa0580950 | Msa1227690 | 0.802445 | 5.590530e-49 | -8.615850e-47 |
| Msa0580950 | Msa1253810 | 0.818144 | 2.285248e-52 | -8.615850e-47 |
| Msa0580950 | Msa1256770 | 0.822047 | 2.919126e-53 | -8.615850e-47 |
| Msa0580950 | Msa1269300 | 0.820762 | 5.780089e-53 | -8.615850e-47 |
| Msa0580950 | Msa1270620 | 0.803084 | 4.126981e-49 | -8.615850e-47 |
| Msa0580950 | Msa1317270 | 0.805230 | 1.475576e-49 | -8.615850e-47 |
| Msa0580950 | Msa1331710 | 0.821111 | 4.803037e-53 | -8.615850e-47 |
| Msa0580950 | Msa1358430 | 0.807981 | 3.876106e-50 | -8.615850e-47 |
| Msa0580950 | Msa1365860 | 0.836602 | 8.500621e-57 | -8.615850e-47 |
| Msa0580950 | Msa1389680 | 0.804050 | 2.602360e-49 | -8.615850e-47 |
| Msa0580950 | Msa1397940 | 0.812586 | 3.936066e-51 | -8.615850e-47 |
| Msa0580950 | Msa1408150 | 0.981619 | 4.931462e-153 | -8.615850e-47 |
| Msa0580950 | Msa1438640 | 0.814760 | 1.307370e-51 | -8.615850e-47 |
| Msa0580950 | Msa1452470 | 0.805008 | 1.642121e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580950 | MtrunA17_Chr7g0275921 | 100.000 | 110 | 0 | 0 | 1 | 110 | 1 | 110 | 4.57e-78 | 224 |
| Msa0580950 | MtrunA17_Chr1g0181591 | 77.273 | 110 | 25 | 0 | 1 | 110 | 1 | 110 | 2.68e-53 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0580950 | AT2G35795.1 | 78.571 | 112 | 22 | 1 | 1 | 110 | 1 | 112 | 1.41e-62 | 186 |
| Msa0580950 | AT5G03030.1 | 77.679 | 112 | 23 | 1 | 1 | 110 | 1 | 112 | 3.97e-54 | 165 |
| Msa0580950 | AT5G03030.2 | 77.477 | 111 | 23 | 1 | 2 | 110 | 42 | 152 | 2.85e-53 | 164 |
| Msa0580950 | AT3G09700.1 | 79.787 | 94 | 17 | 1 | 19 | 110 | 19 | 112 | 1.01e-52 | 161 |
Find 48 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGACAAAATATACGCATATT+TGG | 0.132252 | 4_1:-86248869 | None:intergenic |
| TTTGGGTCTGATAAAATAAT+TGG | 0.133223 | 4_1:-86248851 | None:intergenic |
| GAAAATGAAGAATTCAAAAT+AGG | 0.316751 | 4_1:-86245633 | None:intergenic |
| ACAGCAATCCCAGCAATTAA+AGG | 0.317983 | 4_1:-86246299 | None:intergenic |
| AAGTCTGAACTGTCGATAAT+TGG | 0.348927 | 4_1:-86248778 | None:intergenic |
| CAGGCTTCACCTTTAATTGC+TGG | 0.363751 | 4_1:+86246290 | Msa0580950:intron |
| TTGGGTCTGATAAAATAATT+GGG | 0.374418 | 4_1:-86248850 | None:intergenic |
| CAGCTCTTATACTTGGTGTT+AGG | 0.376066 | 4_1:+86246444 | Msa0580950:CDS |
| GCAGCATATGCTGGTAAATA+TGG | 0.379014 | 4_1:+86246329 | Msa0580950:CDS |
| CTTTGAATGCTTGCCAAGCC+TGG | 0.382829 | 4_1:-86246355 | None:intergenic |
| TAATGGCTGCCACCAGCATC+TGG | 0.390187 | 4_1:-86248664 | None:intergenic |
| TAATTGGCAGAAAGATTATA+CGG | 0.397951 | 4_1:-86248762 | None:intergenic |
| GACAAAATATACGCATATTT+GGG | 0.411436 | 4_1:-86248868 | None:intergenic |
| GAAGCAAAAGATATGATGAT+TGG | 0.421343 | 4_1:+86248706 | Msa0580950:CDS |
| GTGGCTGCTGCAGCATATGC+TGG | 0.421398 | 4_1:+86246320 | Msa0580950:CDS |
| TAATAATAATTTGAAAACCT+TGG | 0.443987 | 4_1:-86245662 | None:intergenic |
| GCTTCTTTAATCTTATCTGT+TGG | 0.444179 | 4_1:-86248613 | None:intergenic |
| GTGCTAAAGTGGCATAAACT+AGG | 0.463135 | 4_1:-86248971 | None:intergenic |
| TCATTAGAGCTGAGTTGATA+AGG | 0.463445 | 4_1:+86248922 | Msa0580950:three_prime_UTR |
| AGGCTTCACCTTTAATTGCT+GGG | 0.473780 | 4_1:+86246291 | Msa0580950:intron |
| TCATAAAATTTACGCAATGC+AGG | 0.486334 | 4_1:-86246386 | None:intergenic |
| TGCTGGTAAATATGGTATCC+AGG | 0.489099 | 4_1:+86246337 | Msa0580950:CDS |
| AAATGCTGATCCACCACCCT+TGG | 0.491232 | 4_1:-86248734 | None:intergenic |
| GCTTCCCTCTTCGTCATAGT+AGG | 0.496100 | 4_1:-86246422 | None:intergenic |
| TGCTAAAGTGGCATAAACTA+GGG | 0.497554 | 4_1:-86248970 | None:intergenic |
| GTAAATATGGTATCCAGGCT+TGG | 0.516960 | 4_1:+86246342 | Msa0580950:CDS |
| ATTGGAAAGACCAAGGGTGG+TGG | 0.525296 | 4_1:+86248724 | Msa0580950:CDS |
| GAGTTGATAAGGCAATCAAT+AGG | 0.532682 | 4_1:+86248933 | Msa0580950:three_prime_UTR |
| CATGTTATAGTGTGCTAAAG+TGG | 0.533894 | 4_1:-86248982 | None:intergenic |
| CAGCTCTAATGACACAAGTC+AGG | 0.536542 | 4_1:-86248911 | None:intergenic |
| AGGGAAGCAGCTCTTATACT+TGG | 0.552024 | 4_1:+86246437 | Msa0580950:CDS |
| TTTAATTGCTGGGATTGCTG+TGG | 0.571174 | 4_1:+86246301 | Msa0580950:CDS |
| GTTGCAAACCATCCAGATGC+TGG | 0.574874 | 4_1:+86248652 | Msa0580950:CDS |
| GGCTGCCACCAGCATCTGGA+TGG | 0.580035 | 4_1:-86248660 | None:intergenic |
| TGGGTCTGATAAAATAATTG+GGG | 0.609462 | 4_1:-86248849 | None:intergenic |
| GCTAAAGTGGCATAAACTAG+GGG | 0.611602 | 4_1:-86248969 | None:intergenic |
| AGAAGCACATAGGAGAGTGA+TGG | 0.627347 | 4_1:+86248630 | Msa0580950:CDS |
| TATGATGATTGGAAAGACCA+AGG | 0.628338 | 4_1:+86248717 | Msa0580950:CDS |
| TCAGCCTACTATGACGAAGA+GGG | 0.630053 | 4_1:+86246418 | Msa0580950:CDS |
| TTCAGCCTACTATGACGAAG+AGG | 0.630974 | 4_1:+86246417 | Msa0580950:CDS |
| TAAAATTTACGCAATGCAGG+TGG | 0.638402 | 4_1:-86246383 | None:intergenic |
| ATAAGATTAAAGAAGCACAT+AGG | 0.640913 | 4_1:+86248620 | Msa0580950:CDS |
| ATGATGATTGGAAAGACCAA+GGG | 0.641235 | 4_1:+86248718 | Msa0580950:CDS |
| GGGTCTGATAAAATAATTGG+GGG | 0.645917 | 4_1:-86248848 | None:intergenic |
| CTAAAGTGGCATAAACTAGG+GGG | 0.700913 | 4_1:-86248968 | None:intergenic |
| GGTCTGATAAAATAATTGGG+GGG | 0.702365 | 4_1:-86248847 | None:intergenic |
| ATGATTGGAAAGACCAAGGG+TGG | 0.710004 | 4_1:+86248721 | Msa0580950:CDS |
| GCAAACCATCCAGATGCTGG+TGG | 0.711252 | 4_1:+86248655 | Msa0580950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAAGATAAAAAAAAATTA+TGG | - | chr4_1:86248547-86248566 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTGGGAAAA+CGG | - | chr4_1:86245532-86245551 | None:intergenic | 15.0% |
| !!! | GGGTATTTTTTTTTTTTTTT+GGG | - | chr4_1:86245539-86245558 | None:intergenic | 15.0% |
| !!! | AGGGTATTTTTTTTTTTTTT+TGG | - | chr4_1:86245540-86245559 | None:intergenic | 15.0% |
| !! | TAATAATAATTTGAAAACCT+TGG | - | chr4_1:86245665-86245684 | None:intergenic | 15.0% |
| !!! | TTTTGAATAGAAAAATCAAA+GGG | - | chr4_1:86245760-86245779 | None:intergenic | 15.0% |
| !!! | GTCAATAAATAAATTTTCAA+AGG | - | chr4_1:86246225-86246244 | None:intergenic | 15.0% |
| !!! | ATATCTTATTTGATTTTTTC+CGG | - | chr4_1:86246543-86246562 | None:intergenic | 15.0% |
| !! | ACTATATTAATTATGAATGT+TGG | + | chr4_1:86247354-86247373 | Msa0580950:intron | 15.0% |
| !! | AACTATATGATTAACAATTA+TGG | + | chr4_1:86247510-86247529 | Msa0580950:intron | 15.0% |
| !!! | TTTTCTTTTCATGATTAAAA+CGG | + | chr4_1:86247942-86247961 | Msa0580950:intron | 15.0% |
| !!! | CATGATTTATGAATTTTTTT+TGG | + | chr4_1:86248051-86248070 | Msa0580950:intron | 15.0% |
| !! | TTATTGTGATTCATTATTAA+CGG | + | chr4_1:86248139-86248158 | Msa0580950:intron | 15.0% |
| !!! | TTTTTTTTTTTTGGGAAAAC+GGG | - | chr4_1:86245531-86245550 | None:intergenic | 20.0% |
| !! | GAAAATGAAGAATTCAAAAT+AGG | - | chr4_1:86245636-86245655 | None:intergenic | 20.0% |
| !! | TTTGAATAGAAAAATCAAAG+GGG | - | chr4_1:86245759-86245778 | None:intergenic | 20.0% |
| !!! | CTTTTGAATAGAAAAATCAA+AGG | - | chr4_1:86245761-86245780 | None:intergenic | 20.0% |
| !!! | AGATTAGTTGTTTATTGTAT+TGG | + | chr4_1:86245836-86245855 | Msa0580950:intron | 20.0% |
| !!! | ATTGGTTTGTTTTATTGTTT+CGG | + | chr4_1:86245854-86245873 | Msa0580950:intron | 20.0% |
| !! | TTAAATAAGTCAATCCAAAT+GGG | + | chr4_1:86246096-86246115 | Msa0580950:intron | 20.0% |
| !! | TTCTAACTATCAATACAATA+AGG | - | chr4_1:86246123-86246142 | None:intergenic | 20.0% |
| !!! | TTGTATTGATAGTTAGAATT+TGG | + | chr4_1:86246125-86246144 | Msa0580950:intron | 20.0% |
| !! | ATAATCATGGTATCATAAAA+GGG | - | chr4_1:86246175-86246194 | None:intergenic | 20.0% |
| !! | AATAATCATGGTATCATAAA+AGG | - | chr4_1:86246176-86246195 | None:intergenic | 20.0% |
| !!! | TTCAAATTATGTTTCTTTTG+TGG | + | chr4_1:86246246-86246265 | Msa0580950:intron | 20.0% |
| !!! | TTTTGTTTTGTAAGATTTCA+AGG | + | chr4_1:86246476-86246495 | Msa0580950:intron | 20.0% |
| !! | TGAATTCATTCATTAAACTA+TGG | + | chr4_1:86246625-86246644 | Msa0580950:intron | 20.0% |
| !! | AAAGCAAAACAAATAAATTG+AGG | - | chr4_1:86246702-86246721 | None:intergenic | 20.0% |
| !! | ATTTACTATTAAACATGTCT+AGG | + | chr4_1:86246894-86246913 | Msa0580950:intron | 20.0% |
| !!! | ATTGATTTACTAATTCTTCT+CGG | - | chr4_1:86247148-86247167 | None:intergenic | 20.0% |
| !!! | ATACTCCAATGTTTAAAATT+AGG | - | chr4_1:86247438-86247457 | None:intergenic | 20.0% |
| !! | CAGGAAAATAATTTATAACT+TGG | + | chr4_1:86247595-86247614 | Msa0580950:intron | 20.0% |
| !!! | TTTCTTTTCATGATTAAAAC+GGG | + | chr4_1:86247943-86247962 | Msa0580950:intron | 20.0% |
| !!! | TACTGTTTTTTTACTGTTTT+TGG | + | chr4_1:86248100-86248119 | Msa0580950:intron | 20.0% |
| !! | GTAGGAATACAAAAAATAAA+GGG | - | chr4_1:86248288-86248307 | None:intergenic | 20.0% |
| !!! | TATGATTTTAGACTTCTAAT+TGG | + | chr4_1:86248433-86248452 | Msa0580950:intron | 20.0% |
| !!! | ATTATGGTAAATTTTTTGTC+AGG | - | chr4_1:86248531-86248550 | None:intergenic | 20.0% |
| ! | ATCAATCATTGATAAAACGT+TGG | - | chr4_1:86245801-86245820 | None:intergenic | 25.0% |
| !!! | TTGGTTTGTTTTATTGTTTC+GGG | + | chr4_1:86245855-86245874 | Msa0580950:intron | 25.0% |
| ! | AATATGTAAAATTGAGCTTC+TGG | - | chr4_1:86245937-86245956 | None:intergenic | 25.0% |
| !! | TGAAAGCACATATAATACAT+GGG | - | chr4_1:86245964-86245983 | None:intergenic | 25.0% |
| !! | ATGAAAGCACATATAATACA+TGG | - | chr4_1:86245965-86245984 | None:intergenic | 25.0% |
| ! | CTTAAATAAGTCAATCCAAA+TGG | + | chr4_1:86246095-86246114 | Msa0580950:intron | 25.0% |
| ! | TAAATAAGTCAATCCAAATG+GGG | + | chr4_1:86246097-86246116 | Msa0580950:intron | 25.0% |
| !!! | AATTTGGATTTTAGTTTTCC+TGG | + | chr4_1:86246141-86246160 | Msa0580950:intron | 25.0% |
| ! | TAATCATGGTATCATAAAAG+GGG | - | chr4_1:86246174-86246193 | None:intergenic | 25.0% |
| ! | TATGATACCATGATTATTGA+AGG | + | chr4_1:86246178-86246197 | Msa0580950:intron | 25.0% |
| ! | ATGATACCATGATTATTGAA+GGG | + | chr4_1:86246179-86246198 | Msa0580950:intron | 25.0% |
| ! | ATTCATTCATTAAACTATGG+TGG | + | chr4_1:86246628-86246647 | Msa0580950:intron | 25.0% |
| ! | AATCAGAAAACATCAGATAT+GGG | - | chr4_1:86246848-86246867 | None:intergenic | 25.0% |
| ! | AAATCAGAAAACATCAGATA+TGG | - | chr4_1:86246849-86246868 | None:intergenic | 25.0% |
| ! | TACATGTGTTACATTGAATA+AGG | + | chr4_1:86246958-86246977 | Msa0580950:intron | 25.0% |
| ! | GAATAAGGATTTGACATTTA+CGG | + | chr4_1:86246973-86246992 | Msa0580950:intron | 25.0% |
| !! | ATTAATTATACCTTAGGTTG+AGG | + | chr4_1:86247302-86247321 | Msa0580950:intron | 25.0% |
| !!! | TTAATTATACCTTAGGTTGA+GGG | + | chr4_1:86247303-86247322 | Msa0580950:intron | 25.0% |
| !!! | TGGAGTATGTCTTTAATTTT+TGG | + | chr4_1:86247374-86247393 | Msa0580950:intron | 25.0% |
| !! | TTTTCAATTGAACAAAGAAC+TGG | - | chr4_1:86247753-86247772 | None:intergenic | 25.0% |
| ! | GAAATATAACTACAGATTAC+AGG | - | chr4_1:86247811-86247830 | None:intergenic | 25.0% |
| !! | TTATATGCATTTTCTTGCAT+TGG | + | chr4_1:86247986-86248005 | Msa0580950:intron | 25.0% |
| !! | TTCATTTTATTCATAGAGAC+TGG | - | chr4_1:86248030-86248049 | None:intergenic | 25.0% |
| !!! | TGTTTTTTTACTGTTTTTGG+TGG | + | chr4_1:86248103-86248122 | Msa0580950:intron | 25.0% |
| !!! | GTTTTTTTACTGTTTTTGGT+GGG | + | chr4_1:86248104-86248123 | Msa0580950:intron | 25.0% |
| ! | AACAGTAAAAACAGTACATA+AGG | + | chr4_1:86248244-86248263 | Msa0580950:intron | 25.0% |
| ! | GGTAGGAATACAAAAAATAA+AGG | - | chr4_1:86248289-86248308 | None:intergenic | 25.0% |
| !!! | ATTATCCTCATGTTTTTAAG+CGG | - | chr4_1:86248399-86248418 | None:intergenic | 25.0% |
| !! | ATAAGATTAAAGAAGCACAT+AGG | + | chr4_1:86248620-86248639 | Msa0580950:CDS | 25.0% |
| ! | TAATTGGCAGAAAGATTATA+CGG | - | chr4_1:86248765-86248784 | None:intergenic | 25.0% |
| ! | TTGGGTCTGATAAAATAATT+GGG | - | chr4_1:86248853-86248872 | None:intergenic | 25.0% |
| ! | TTTGGGTCTGATAAAATAAT+TGG | - | chr4_1:86248854-86248873 | None:intergenic | 25.0% |
| ! | GACAAAATATACGCATATTT+GGG | - | chr4_1:86248871-86248890 | None:intergenic | 25.0% |
| !! | ATTTTGAATTTGAACGTGAT+CGG | + | chr4_1:86249006-86249025 | Msa0580950:three_prime_UTR | 25.0% |
| GTTCTTGATAGACAGAAAAA+TGG | - | chr4_1:86245570-86245589 | None:intergenic | 30.0% | |
| ! | TCTTCATTTTCATTTCTCCA+AGG | + | chr4_1:86245645-86245664 | Msa0580950:five_prime_UTR | 30.0% |
| ACGTTGGACATAGAAAAATA+AGG | - | chr4_1:86245785-86245804 | None:intergenic | 30.0% | |
| !!! | TGGTTTGTTTTATTGTTTCG+GGG | + | chr4_1:86245856-86245875 | Msa0580950:intron | 30.0% |
| CATGAACATATAAGCTCTTA+TGG | + | chr4_1:86245982-86246001 | Msa0580950:intron | 30.0% | |
| AATAAGCTGAAAACACCTTA+CGG | + | chr4_1:86246006-86246025 | Msa0580950:intron | 30.0% | |
| TCATAAAATTTACGCAATGC+AGG | - | chr4_1:86246389-86246408 | None:intergenic | 30.0% | |
| ! | GCATTGCGTAAATTTTATGA+AGG | + | chr4_1:86246389-86246408 | Msa0580950:CDS | 30.0% |
| ! | TTGCGTAAATTTTATGAAGG+TGG | + | chr4_1:86246392-86246411 | Msa0580950:CDS | 30.0% |
| TAACGAAAGTTGAAAACTAC+CGG | + | chr4_1:86246521-86246540 | Msa0580950:intron | 30.0% | |
| ! | CATTAAACTATGGTGGAATA+TGG | + | chr4_1:86246635-86246654 | Msa0580950:intron | 30.0% |
| AGAACTAATATCAGACAGTT+AGG | - | chr4_1:86246740-86246759 | None:intergenic | 30.0% | |
| TACATTTGACCTTGTCTATT+GGG | - | chr4_1:86246931-86246950 | None:intergenic | 30.0% | |
| CTAAATCCTAGAAGTTATGT+TGG | + | chr4_1:86247042-86247061 | Msa0580950:intron | 30.0% | |
| AGAAAACCAACATAACTTCT+AGG | - | chr4_1:86247051-86247070 | None:intergenic | 30.0% | |
| ! | TATAGTTTCTGGGTAGTATA+AGG | - | chr4_1:86247191-86247210 | None:intergenic | 30.0% |
| ACTACCCAGAAACTATAATT+TGG | + | chr4_1:86247194-86247213 | Msa0580950:intron | 30.0% | |
| GTAGCCAAATTATAGTTTCT+GGG | - | chr4_1:86247201-86247220 | None:intergenic | 30.0% | |
| AGTAGCCAAATTATAGTTTC+TGG | - | chr4_1:86247202-86247221 | None:intergenic | 30.0% | |
| GAAACTATAATTTGGCTACT+TGG | + | chr4_1:86247202-86247221 | Msa0580950:intron | 30.0% | |
| !! | CACATTGCTTTTCTTGTTAA+GGG | + | chr4_1:86247276-86247295 | Msa0580950:intron | 30.0% |
| GGGCTTATTAATTATACCTT+AGG | + | chr4_1:86247296-86247315 | Msa0580950:intron | 30.0% | |
| !!! | TGGTTTTGTTATATGACTTC+TGG | + | chr4_1:86247394-86247413 | Msa0580950:intron | 30.0% |
| ! | GCTGTCCTAATTTTAAACAT+TGG | + | chr4_1:86247430-86247449 | Msa0580950:intron | 30.0% |
| GAAGGAATAACAACATCAAA+TGG | - | chr4_1:86247634-86247653 | None:intergenic | 30.0% | |
| ! | AGTTATATTTCTGTACTGTC+TGG | + | chr4_1:86247820-86247839 | Msa0580950:intron | 30.0% |
| ACAAGTACCATTTCTGATTA+TGG | + | chr4_1:86247864-86247883 | Msa0580950:intron | 30.0% | |
| AAATGAGCCATAATCAGAAA+TGG | - | chr4_1:86247874-86247893 | None:intergenic | 30.0% | |
| ATTTCTGATTATGGCTCATT+TGG | + | chr4_1:86247873-86247892 | Msa0580950:intron | 30.0% | |
| ! | TACACTTGCATTGTTATTAG+AGG | + | chr4_1:86248219-86248238 | Msa0580950:intron | 30.0% |
| !! | TACATAAGGTACTGTTTCTA+AGG | + | chr4_1:86248258-86248277 | Msa0580950:intron | 30.0% |
| ATTAACCGCTTAAAAACATG+AGG | + | chr4_1:86248391-86248410 | Msa0580950:intron | 30.0% | |
| GCTTCTTTAATCTTATCTGT+TGG | - | chr4_1:86248616-86248635 | None:intergenic | 30.0% | |
| !! | TGATTTTGGAAGCAAGATAA+TGG | - | chr4_1:86248684-86248703 | None:intergenic | 30.0% |
| !!! | ATCTTTTGCTTCGTTGATTT+TGG | - | chr4_1:86248698-86248717 | None:intergenic | 30.0% |
| GAAGCAAAAGATATGATGAT+TGG | + | chr4_1:86248706-86248725 | Msa0580950:CDS | 30.0% | |
| TGGGTCTGATAAAATAATTG+GGG | - | chr4_1:86248852-86248871 | None:intergenic | 30.0% | |
| CGACAAAATATACGCATATT+TGG | - | chr4_1:86248872-86248891 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTGGGAAAACGGGT+GGG | - | chr4_1:86245527-86245546 | None:intergenic | 35.0% |
| !!! | TTTTTTTTTGGGAAAACGGG+TGG | - | chr4_1:86245528-86245547 | None:intergenic | 35.0% |
| CTTGATAGACAGAAAAATGG+AGG | - | chr4_1:86245567-86245586 | None:intergenic | 35.0% | |
| ! | AACATAGGGTTTTTGCAGAA+CGG | - | chr4_1:86245726-86245745 | None:intergenic | 35.0% |
| ATAAGCTGAAAACACCTTAC+GGG | + | chr4_1:86246007-86246026 | Msa0580950:intron | 35.0% | |
| TTTCCAAAAGCTCTCTCAAA+CGG | + | chr4_1:86246043-86246062 | Msa0580950:intron | 35.0% | |
| TTGAAGGGTGACCTATTTAT+TGG | + | chr4_1:86246194-86246213 | Msa0580950:intron | 35.0% | |
| TGAAGGGTGACCTATTTATT+GGG | + | chr4_1:86246195-86246214 | Msa0580950:intron | 35.0% | |
| GTGGAACTGAAATTGAAGTT+TGG | + | chr4_1:86246265-86246284 | Msa0580950:intron | 35.0% | |
| ! | CTGAAATTGAAGTTTGGAAC+AGG | + | chr4_1:86246271-86246290 | Msa0580950:intron | 35.0% |
| TAAAATTTACGCAATGCAGG+TGG | - | chr4_1:86246386-86246405 | None:intergenic | 35.0% | |
| TGGGACATAAACAGATCAAT+GGG | - | chr4_1:86246829-86246848 | None:intergenic | 35.0% | |
| ATGGGACATAAACAGATCAA+TGG | - | chr4_1:86246830-86246849 | None:intergenic | 35.0% | |
| CTATTAAACATGTCTAGGTG+AGG | + | chr4_1:86246899-86246918 | Msa0580950:intron | 35.0% | |
| CTACATTTGACCTTGTCTAT+TGG | - | chr4_1:86246932-86246951 | None:intergenic | 35.0% | |
| ATTTGACATTTACGGCCATT+CGG | + | chr4_1:86246981-86247000 | Msa0580950:intron | 35.0% | |
| GAGGTGGTTATAAGAAACAT+GGG | - | chr4_1:86247110-86247129 | None:intergenic | 35.0% | |
| AGAGGTGGTTATAAGAAACA+TGG | - | chr4_1:86247111-86247130 | None:intergenic | 35.0% | |
| TTTCTTATAACCACCTCTGT+TGG | + | chr4_1:86247113-86247132 | Msa0580950:intron | 35.0% | |
| GATTTACTAATTCTTCTCGG+TGG | - | chr4_1:86247145-86247164 | None:intergenic | 35.0% | |
| TTTCTGGGTAGTATAAGGAT+AGG | - | chr4_1:86247186-86247205 | None:intergenic | 35.0% | |
| CTGTCGAGAAATGAAAAAAC+AGG | - | chr4_1:86247235-86247254 | None:intergenic | 35.0% | |
| CCTTAACAAGAAAAGCAATG+TGG | - | chr4_1:86247278-86247297 | None:intergenic | 35.0% | |
| !! | CCACATTGCTTTTCTTGTTA+AGG | + | chr4_1:86247275-86247294 | Msa0580950:intron | 35.0% |
| AGCAATCTGAATCAGTTCAA+CGG | - | chr4_1:86247568-86247587 | None:intergenic | 35.0% | |
| ATTCAGATTGCTGAGAAATC+AGG | + | chr4_1:86247576-86247595 | Msa0580950:intron | 35.0% | |
| ATCAAGCAAACTAAAGAGGA+AGG | - | chr4_1:86247652-86247671 | None:intergenic | 35.0% | |
| !! | TTCCTCTTTAGTTTGCTTGA+TGG | + | chr4_1:86247651-86247670 | Msa0580950:intron | 35.0% |
| GATAAGTCCACTTCAAAAGT+CGG | - | chr4_1:86247725-86247744 | None:intergenic | 35.0% | |
| AGACTGGATACAATACAACA+TGG | - | chr4_1:86248014-86248033 | None:intergenic | 35.0% | |
| !!! | TTTTTACTGTTTTTGGTGGG+TGG | + | chr4_1:86248107-86248126 | Msa0580950:intron | 35.0% |
| AAGTGTTAACAAGATGACGA+GGG | + | chr4_1:86248172-86248191 | Msa0580950:intron | 35.0% | |
| ! | TCCTACCTTTTAGACATTCA+TGG | + | chr4_1:86248302-86248321 | Msa0580950:intron | 35.0% |
| CAAAGTATGAAACACATGCT+CGG | - | chr4_1:86248460-86248479 | None:intergenic | 35.0% | |
| ! | GTCTGTATTTTCACACTTGT+TGG | + | chr4_1:86248479-86248498 | Msa0580950:intron | 35.0% |
| !!! | TCTTGCTGATTTTCAACTGT+CGG | + | chr4_1:86248566-86248585 | Msa0580950:intron | 35.0% |
| TATGATGATTGGAAAGACCA+AGG | + | chr4_1:86248717-86248736 | Msa0580950:CDS | 35.0% | |
| ATGATGATTGGAAAGACCAA+GGG | + | chr4_1:86248718-86248737 | Msa0580950:CDS | 35.0% | |
| AAGTCTGAACTGTCGATAAT+TGG | - | chr4_1:86248781-86248800 | None:intergenic | 35.0% | |
| GGTCTGATAAAATAATTGGG+GGG | - | chr4_1:86248850-86248869 | None:intergenic | 35.0% | |
| GGGTCTGATAAAATAATTGG+GGG | - | chr4_1:86248851-86248870 | None:intergenic | 35.0% | |
| !! | TCATTAGAGCTGAGTTGATA+AGG | + | chr4_1:86248922-86248941 | Msa0580950:three_prime_UTR | 35.0% |
| !! | GAGTTGATAAGGCAATCAAT+AGG | + | chr4_1:86248933-86248952 | Msa0580950:three_prime_UTR | 35.0% |
| TGCTAAAGTGGCATAAACTA+GGG | - | chr4_1:86248973-86248992 | None:intergenic | 35.0% | |
| CATGTTATAGTGTGCTAAAG+TGG | - | chr4_1:86248985-86249004 | None:intergenic | 35.0% | |
| ACAGAAAAATGGAGGAGGTA+GGG | - | chr4_1:86245559-86245578 | None:intergenic | 40.0% | |
| GATAGACAGAAAAATGGAGG+AGG | - | chr4_1:86245564-86245583 | None:intergenic | 40.0% | |
| GCTACGAGGTTAATGATGAA+AGG | - | chr4_1:86245701-86245720 | None:intergenic | 40.0% | |
| TTTATTGTTTCGGGGTTCTG+AGG | + | chr4_1:86245864-86245883 | Msa0580950:intron | 40.0% | |
| TGGCAGAGGGTTTATGAATT+AGG | + | chr4_1:86245887-86245906 | Msa0580950:intron | 40.0% | |
| CAATACAATAAGGCCCCATT+TGG | - | chr4_1:86246113-86246132 | None:intergenic | 40.0% | |
| AGGTCACCCTTCAATAATCA+TGG | - | chr4_1:86246188-86246207 | None:intergenic | 40.0% | |
| CAAAGGCTCTCCCAATAAAT+AGG | - | chr4_1:86246208-86246227 | None:intergenic | 40.0% | |
| AGGCTTCACCTTTAATTGCT+GGG | + | chr4_1:86246291-86246310 | Msa0580950:intron | 40.0% | |
| ACAGCAATCCCAGCAATTAA+AGG | - | chr4_1:86246302-86246321 | None:intergenic | 40.0% | |
| TTTAATTGCTGGGATTGCTG+TGG | + | chr4_1:86246301-86246320 | Msa0580950:CDS | 40.0% | |
| GCAGCATATGCTGGTAAATA+TGG | + | chr4_1:86246329-86246348 | Msa0580950:CDS | 40.0% | |
| TGCTGGTAAATATGGTATCC+AGG | + | chr4_1:86246337-86246356 | Msa0580950:CDS | 40.0% | |
| GTAAATATGGTATCCAGGCT+TGG | + | chr4_1:86246342-86246361 | Msa0580950:CDS | 40.0% | |
| !! | CAGCTCTTATACTTGGTGTT+AGG | + | chr4_1:86246444-86246463 | Msa0580950:CDS | 40.0% |
| TGAGGTGACTAAAACCAGAA+GGG | - | chr4_1:86246684-86246703 | None:intergenic | 40.0% | |
| TTGAGGTGACTAAAACCAGA+AGG | - | chr4_1:86246685-86246704 | None:intergenic | 40.0% | |
| CAGACAGTTAGGAAATGTGA+GGG | - | chr4_1:86246729-86246748 | None:intergenic | 40.0% | |
| TCAGACAGTTAGGAAATGTG+AGG | - | chr4_1:86246730-86246749 | None:intergenic | 40.0% | |
| !! | TTGTTGTGTGTTGGTTAGGT+TGG | + | chr4_1:86247004-86247023 | Msa0580950:intron | 40.0% |
| !! | TGTTGTGTGTTGGTTAGGTT+GGG | + | chr4_1:86247005-86247024 | Msa0580950:intron | 40.0% |
| TTATAACCACCTCTGTTGGA+AGG | + | chr4_1:86247117-86247136 | Msa0580950:intron | 40.0% | |
| AGAAAAGCAATGTGGTTGAC+TGG | - | chr4_1:86247270-86247289 | None:intergenic | 40.0% | |
| CACCATCAAGCAAACTAAAG+AGG | - | chr4_1:86247656-86247675 | None:intergenic | 40.0% | |
| !!! | CTTTTGAAGTGGACTTATCC+TGG | + | chr4_1:86247726-86247745 | Msa0580950:intron | 40.0% |
| ATTGAACAAAGAACTGGACC+AGG | - | chr4_1:86247747-86247766 | None:intergenic | 40.0% | |
| AGCTATCTGAATCTCAACGA+TGG | - | chr4_1:86247788-86247807 | None:intergenic | 40.0% | |
| TCTGATTATGGCTCATTTGG+TGG | + | chr4_1:86247876-86247895 | Msa0580950:intron | 40.0% | |
| CAAGTGTTAACAAGATGACG+AGG | + | chr4_1:86248171-86248190 | Msa0580950:intron | 40.0% | |
| TTAACAAGATGACGAGGGTT+TGG | + | chr4_1:86248177-86248196 | Msa0580950:intron | 40.0% | |
| TAACAAGATGACGAGGGTTT+GGG | + | chr4_1:86248178-86248197 | Msa0580950:intron | 40.0% | |
| GCCATGAATGTCTAAAAGGT+AGG | - | chr4_1:86248306-86248325 | None:intergenic | 40.0% | |
| ! | ACCTTTTAGACATTCATGGC+AGG | + | chr4_1:86248306-86248325 | Msa0580950:intron | 40.0% |
| ACCTGCCATGAATGTCTAAA+AGG | - | chr4_1:86248310-86248329 | None:intergenic | 40.0% | |
| CATATTCTGAACTTTGCCTC+AGG | - | chr4_1:86248366-86248385 | None:intergenic | 40.0% | |
| CTAAAGTGGCATAAACTAGG+GGG | - | chr4_1:86248971-86248990 | None:intergenic | 40.0% | |
| GCTAAAGTGGCATAAACTAG+GGG | - | chr4_1:86248972-86248991 | None:intergenic | 40.0% | |
| GTGCTAAAGTGGCATAAACT+AGG | - | chr4_1:86248974-86248993 | None:intergenic | 40.0% | |
| GACAGAAAAATGGAGGAGGT+AGG | - | chr4_1:86245560-86245579 | None:intergenic | 45.0% | |
| AGAAAAATCAAAGGGGAGCG+AGG | - | chr4_1:86245752-86245771 | None:intergenic | 45.0% | |
| ! | AGACCGTTTGAGAGAGCTTT+TGG | - | chr4_1:86246049-86246068 | None:intergenic | 45.0% |
| ! | CATAAAAGGGGCATATTGCC+AGG | - | chr4_1:86246162-86246181 | None:intergenic | 45.0% |
| CAGGCTTCACCTTTAATTGC+TGG | + | chr4_1:86246290-86246309 | Msa0580950:intron | 45.0% | |
| TTCAGCCTACTATGACGAAG+AGG | + | chr4_1:86246417-86246436 | Msa0580950:CDS | 45.0% | |
| TCAGCCTACTATGACGAAGA+GGG | + | chr4_1:86246418-86246437 | Msa0580950:CDS | 45.0% | |
| AGGGAAGCAGCTCTTATACT+TGG | + | chr4_1:86246437-86246456 | Msa0580950:CDS | 45.0% | |
| TGACTAAAACCAGAAGGGGA+GGG | - | chr4_1:86246679-86246698 | None:intergenic | 45.0% | |
| GAGGTGACTAAAACCAGAAG+GGG | - | chr4_1:86246683-86246702 | None:intergenic | 45.0% | |
| ! | GAGTCAGTTTTTCCCTGATG+TGG | + | chr4_1:86246771-86246790 | Msa0580950:intron | 45.0% |
| GCACTCTGTATTCCACATCA+GGG | - | chr4_1:86246786-86246805 | None:intergenic | 45.0% | |
| AGCACTCTGTATTCCACATC+AGG | - | chr4_1:86246787-86246806 | None:intergenic | 45.0% | |
| ACCAACACACAACAACCGAA+TGG | - | chr4_1:86246999-86247018 | None:intergenic | 45.0% | |
| !! | TCGGTTGTTGTGTGTTGGTT+AGG | + | chr4_1:86247000-86247019 | Msa0580950:intron | 45.0% |
| CAATGTGGTTGACTGGATGA+TGG | - | chr4_1:86247263-86247282 | None:intergenic | 45.0% | |
| !! | GCAAGTTCCGACTTTTGAAG+TGG | + | chr4_1:86247715-86247734 | Msa0580950:intron | 45.0% |
| TCTGTACTGTCTGGTCTCTT+CGG | + | chr4_1:86247829-86247848 | Msa0580950:intron | 45.0% | |
| ! | ATACTTTGGGAGGGAGACAA+AGG | - | chr4_1:86248340-86248359 | None:intergenic | 45.0% |
| TTGCCTCAGGCACATACTTT+GGG | - | chr4_1:86248353-86248372 | None:intergenic | 45.0% | |
| TTTGCCTCAGGCACATACTT+TGG | - | chr4_1:86248354-86248373 | None:intergenic | 45.0% | |
| ! | AGAAGCACATAGGAGAGTGA+TGG | + | chr4_1:86248630-86248649 | Msa0580950:CDS | 45.0% |
| ATGATTGGAAAGACCAAGGG+TGG | + | chr4_1:86248721-86248740 | Msa0580950:CDS | 45.0% | |
| ! | CAGCTCTAATGACACAAGTC+AGG | - | chr4_1:86248914-86248933 | None:intergenic | 45.0% |
| !! | TCAAATTATTATTATTATTA+TGG | + | chr4_1:86245671-86245690 | Msa0580950:exon | 5.0% |
| !! | CATTTAAAAAAAAAAAAAAA+AGG | - | chr4_1:86246605-86246624 | None:intergenic | 5.0% |
| TTTGCAGAACGGAAGCTACG+AGG | - | chr4_1:86245715-86245734 | None:intergenic | 50.0% | |
| GGGGAGCGAGGAAAAACATA+GGG | - | chr4_1:86245740-86245759 | None:intergenic | 50.0% | |
| AGGGGAGCGAGGAAAAACAT+AGG | - | chr4_1:86245741-86245760 | None:intergenic | 50.0% | |
| !! | ATTGTTTCGGGGTTCTGAGG+TGG | + | chr4_1:86245867-86245886 | Msa0580950:intron | 50.0% |
| ACAGCTTATGACAGCCCGTA+AGG | - | chr4_1:86246024-86246043 | None:intergenic | 50.0% | |
| CTTTGAATGCTTGCCAAGCC+TGG | - | chr4_1:86246358-86246377 | None:intergenic | 50.0% | |
| GCTTCCCTCTTCGTCATAGT+AGG | - | chr4_1:86246425-86246444 | None:intergenic | 50.0% | |
| GTGACTAAAACCAGAAGGGG+AGG | - | chr4_1:86246680-86246699 | None:intergenic | 50.0% | |
| AGGCATTCGCCCAATAGACA+AGG | + | chr4_1:86246919-86246938 | Msa0580950:intron | 50.0% | |
| GCCATTCGGTTGTTGTGTGT+TGG | + | chr4_1:86246995-86247014 | Msa0580950:intron | 50.0% | |
| !! | TGTGTTGGTTAGGTTGGGAG+AGG | + | chr4_1:86247010-86247029 | Msa0580950:intron | 50.0% |
| ! | TGGTTGACTGGATGATGGCA+TGG | - | chr4_1:86247258-86247277 | None:intergenic | 50.0% |
| TCACAATCGCCCTCAACCTA+AGG | - | chr4_1:86247315-86247334 | None:intergenic | 50.0% | |
| !!! | CTGTTTTTGGTGGGTGGCTA+TGG | + | chr4_1:86248113-86248132 | Msa0580950:intron | 50.0% |
| !! | TTTTTGGTGGGTGGCTATGG+CGG | + | chr4_1:86248116-86248135 | Msa0580950:intron | 50.0% |
| ! | CTCAGGCACATACTTTGGGA+GGG | - | chr4_1:86248349-86248368 | None:intergenic | 50.0% |
| GTTGCAAACCATCCAGATGC+TGG | + | chr4_1:86248652-86248671 | Msa0580950:CDS | 50.0% | |
| ATTGGAAAGACCAAGGGTGG+TGG | + | chr4_1:86248724-86248743 | Msa0580950:CDS | 50.0% | |
| AAATGCTGATCCACCACCCT+TGG | - | chr4_1:86248737-86248756 | None:intergenic | 50.0% | |
| !! | AGAAGGGGAGGGTATTCGCA+GGG | - | chr4_1:86246668-86246687 | None:intergenic | 55.0% |
| !! | TGGTTAGGTTGGGAGAGGCT+AGG | + | chr4_1:86247015-86247034 | Msa0580950:intron | 55.0% |
| GTGGTACCTTCCAACAGAGG+TGG | - | chr4_1:86247126-86247145 | None:intergenic | 55.0% | |
| TCGGTGGTACCTTCCAACAG+AGG | - | chr4_1:86247129-86247148 | None:intergenic | 55.0% | |
| TCGGAACTTGCAACACACGC+GGG | - | chr4_1:86247706-86247725 | None:intergenic | 55.0% | |
| GTCGGAACTTGCAACACACG+CGG | - | chr4_1:86247707-86247726 | None:intergenic | 55.0% | |
| CCTCAGGCACATACTTTGGG+AGG | - | chr4_1:86248350-86248369 | None:intergenic | 55.0% | |
| CCTCCCAAAGTATGTGCCTG+AGG | + | chr4_1:86248347-86248366 | Msa0580950:intron | 55.0% | |
| GCAAACCATCCAGATGCTGG+TGG | + | chr4_1:86248655-86248674 | Msa0580950:CDS | 55.0% | |
| TAATGGCTGCCACCAGCATC+TGG | - | chr4_1:86248667-86248686 | None:intergenic | 55.0% | |
| GTGGCTGCTGCAGCATATGC+TGG | + | chr4_1:86246320-86246339 | Msa0580950:CDS | 60.0% | |
| !! | CAGAAGGGGAGGGTATTCGC+AGG | - | chr4_1:86246669-86246688 | None:intergenic | 60.0% |
| CTGCGAATACCCTCCCCTTC+TGG | + | chr4_1:86246667-86246686 | Msa0580950:intron | 60.0% | |
| CGGAACTTGCAACACACGCG+GGG | - | chr4_1:86247705-86247724 | None:intergenic | 60.0% | |
| ACGAGGGTTTGGGTCTGACG+TGG | + | chr4_1:86248188-86248207 | Msa0580950:intron | 60.0% | |
| !! | TCGGGGTTCTGAGGTGGCAG+AGG | + | chr4_1:86245873-86245892 | Msa0580950:intron | 65.0% |
| !! | CGGGGTTCTGAGGTGGCAGA+GGG | + | chr4_1:86245874-86245893 | Msa0580950:intron | 65.0% |
| GGCTGCCACCAGCATCTGGA+TGG | - | chr4_1:86248663-86248682 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 86245523 | 86249083 | 86245523 | ID=Msa0580950;Name=Msa0580950 |
| chr4_1 | mRNA | 86245523 | 86249083 | 86245523 | ID=Msa0580950-mRNA-1;Parent=Msa0580950;Name=Msa0580950-mRNA-1;_AED=0.01;_eAED=0.01;_QI=167|1|1|1|0.5|0.66|3|324|110 |
| chr4_1 | exon | 86245523 | 86245692 | 86245523 | ID=Msa0580950-mRNA-1:exon:31826;Parent=Msa0580950-mRNA-1 |
| chr4_1 | exon | 86246293 | 86246465 | 86246293 | ID=Msa0580950-mRNA-1:exon:31827;Parent=Msa0580950-mRNA-1 |
| chr4_1 | exon | 86248603 | 86249083 | 86248603 | ID=Msa0580950-mRNA-1:exon:31828;Parent=Msa0580950-mRNA-1 |
| chr4_1 | five_prime_UTR | 86245523 | 86245689 | 86245523 | ID=Msa0580950-mRNA-1:five_prime_utr;Parent=Msa0580950-mRNA-1 |
| chr4_1 | CDS | 86245690 | 86245692 | 86245690 | ID=Msa0580950-mRNA-1:cds;Parent=Msa0580950-mRNA-1 |
| chr4_1 | CDS | 86246293 | 86246465 | 86246293 | ID=Msa0580950-mRNA-1:cds;Parent=Msa0580950-mRNA-1 |
| chr4_1 | CDS | 86248603 | 86248759 | 86248603 | ID=Msa0580950-mRNA-1:cds;Parent=Msa0580950-mRNA-1 |
| chr4_1 | three_prime_UTR | 86248760 | 86249083 | 86248760 | ID=Msa0580950-mRNA-1:three_prime_utr;Parent=Msa0580950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
