Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414780 | RHN67909.1 | 96.812 | 345 | 8 | 1 | 1 | 345 | 1 | 342 | 0.0 | 685 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414780 | sp|A0A096VHY7|XMT2_COFAR | 42.450 | 351 | 190 | 4 | 5 | 343 | 28 | 378 | 7.03e-95 | 290 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414780 | A0A396IQF1 | 96.812 | 345 | 8 | 1 | 1 | 345 | 1 | 342 | 0.0 | 685 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043940 | Msa0414780 | 0.818072 | 2.372220e-52 | -8.615850e-47 |
| Msa0044710 | Msa0414780 | 0.803724 | 3.041514e-49 | -8.615850e-47 |
| Msa0050720 | Msa0414780 | 0.847149 | 1.387924e-59 | -8.615850e-47 |
| Msa0050770 | Msa0414780 | 0.836707 | 7.993483e-57 | -8.615850e-47 |
| Msa0092710 | Msa0414780 | 0.818762 | 1.655255e-52 | -8.615850e-47 |
| Msa0109490 | Msa0414780 | 0.800855 | 1.184667e-48 | -8.615850e-47 |
| Msa0155610 | Msa0414780 | 0.804316 | 2.289932e-49 | -8.615850e-47 |
| Msa0182640 | Msa0414780 | 0.821723 | 3.469605e-53 | -8.615850e-47 |
| Msa0222660 | Msa0414780 | 0.840286 | 9.528332e-58 | -8.615850e-47 |
| Msa0235550 | Msa0414780 | 0.808797 | 2.595559e-50 | -8.615850e-47 |
| Msa0366870 | Msa0414780 | 0.862233 | 5.856839e-64 | -8.615850e-47 |
| Msa0401340 | Msa0414780 | 0.805949 | 1.042436e-49 | -8.615850e-47 |
| Msa0414780 | Msa0431830 | 0.801918 | 7.177127e-49 | -8.615850e-47 |
| Msa0414780 | Msa0432720 | 0.802017 | 6.849410e-49 | -8.615850e-47 |
| Msa0414780 | Msa0448120 | 0.800300 | 1.537723e-48 | -8.615850e-47 |
| Msa0414780 | Msa0530950 | 0.806858 | 6.705365e-50 | -8.615850e-47 |
| Msa0414780 | Msa0583790 | 0.809167 | 2.163434e-50 | -8.615850e-47 |
| Msa0414780 | Msa0628100 | 0.805592 | 1.239203e-49 | -8.615850e-47 |
| Msa0414780 | Msa0704220 | 0.826567 | 2.526777e-54 | -8.615850e-47 |
| Msa0414780 | Msa0734660 | 0.814458 | 1.525217e-51 | -8.615850e-47 |
| Msa0414780 | Msa0760890 | 0.802275 | 6.060801e-49 | -8.615850e-47 |
| Msa0414780 | Msa0769830 | 0.813534 | 2.438206e-51 | -8.615850e-47 |
| Msa0414780 | Msa0776220 | 0.815435 | 9.258295e-52 | -8.615850e-47 |
| Msa0414780 | Msa0804120 | 0.803969 | 2.704917e-49 | -8.615850e-47 |
| Msa0414780 | Msa0813670 | 0.820632 | 6.189609e-53 | -8.615850e-47 |
| Msa0414780 | Msa0848760 | 0.811205 | 7.866088e-51 | -8.615850e-47 |
| Msa0414780 | Msa1157730 | 0.808020 | 3.802664e-50 | -8.615850e-47 |
| Msa0414780 | Msa1287360 | 0.817886 | 2.613176e-52 | -8.615850e-47 |
| Msa0414780 | Msa1306190 | 0.805649 | 1.205433e-49 | -8.615850e-47 |
| Msa0414780 | Msa1306200 | 0.810101 | 1.362570e-50 | -8.615850e-47 |
| Msa0414780 | Msa1378460 | 0.825842 | 3.759223e-54 | -8.615850e-47 |
| Msa0414780 | Msa1378470 | 0.808082 | 3.687719e-50 | -8.615850e-47 |
| Msa0414780 | Msa1439120 | 0.823348 | 1.454044e-53 | -8.615850e-47 |
| Msa0414780 | Msa1440220 | 0.828302 | 9.694412e-55 | -8.615850e-47 |
| Msa0414780 | Msa1440610 | 0.843253 | 1.569613e-58 | -8.615850e-47 |
| Msa0414780 | Msa1455660 | 0.822533 | 2.251852e-53 | -8.615850e-47 |
| Msa0264050 | Msa0414780 | 0.837027 | 6.620533e-57 | -8.615850e-47 |
| Msa0274520 | Msa0414780 | 0.806873 | 6.657581e-50 | -8.615850e-47 |
| Msa0301980 | Msa0414780 | 0.825496 | 4.540944e-54 | -8.615850e-47 |
| Msa0326670 | Msa0414780 | 0.810750 | 9.870180e-51 | -8.615850e-47 |
| Msa0339310 | Msa0414780 | 0.829203 | 5.871537e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414780 | MtrunA17_Chr3g0107871 | 96.812 | 345 | 8 | 1 | 1 | 345 | 1 | 342 | 0.0 | 685 |
| Msa0414780 | MtrunA17_Chr7g0252361 | 70.674 | 341 | 99 | 1 | 3 | 343 | 24 | 363 | 0.0 | 508 |
| Msa0414780 | MtrunA17_Chr3g0144871 | 53.468 | 346 | 154 | 4 | 2 | 343 | 25 | 367 | 1.27e-129 | 375 |
| Msa0414780 | MtrunA17_Chr7g0252501 | 81.068 | 206 | 37 | 1 | 138 | 343 | 25 | 228 | 3.26e-120 | 346 |
| Msa0414780 | MtrunA17_Chr8g0372671 | 44.253 | 348 | 178 | 6 | 1 | 343 | 24 | 360 | 2.19e-94 | 285 |
| Msa0414780 | MtrunA17_Chr5g0404631 | 42.655 | 354 | 184 | 6 | 1 | 343 | 34 | 379 | 3.06e-91 | 278 |
| Msa0414780 | MtrunA17_Chr8g0372821 | 40.113 | 354 | 192 | 6 | 1 | 343 | 24 | 368 | 4.37e-91 | 277 |
| Msa0414780 | MtrunA17_Chr4g0008111 | 40.346 | 347 | 190 | 6 | 1 | 343 | 24 | 357 | 1.05e-88 | 270 |
| Msa0414780 | MtrunA17_Chr6g0475241 | 40.058 | 347 | 188 | 5 | 1 | 343 | 25 | 355 | 3.78e-88 | 269 |
| Msa0414780 | MtrunA17_Chr3g0107591 | 38.418 | 354 | 198 | 5 | 1 | 343 | 23 | 367 | 3.03e-86 | 264 |
| Msa0414780 | MtrunA17_Chr6g0475221 | 43.450 | 313 | 162 | 4 | 32 | 343 | 54 | 352 | 2.65e-84 | 259 |
| Msa0414780 | MtrunA17_Chr8g0343981 | 38.040 | 347 | 194 | 4 | 2 | 343 | 25 | 355 | 5.63e-80 | 248 |
| Msa0414780 | MtrunA17_Chr5g0419851 | 38.793 | 348 | 197 | 4 | 1 | 343 | 84 | 420 | 1.55e-75 | 238 |
| Msa0414780 | MtrunA17_Chr8g0343971 | 38.040 | 347 | 197 | 5 | 2 | 343 | 25 | 358 | 1.12e-74 | 234 |
| Msa0414780 | MtrunA17_Chr7g0252341 | 68.148 | 135 | 38 | 3 | 7 | 139 | 1 | 132 | 2.38e-58 | 185 |
| Msa0414780 | MtrunA17_Chr5g0444921 | 35.061 | 328 | 191 | 8 | 29 | 342 | 70 | 389 | 1.06e-51 | 176 |
| Msa0414780 | MtrunA17_Chr3g0100101 | 35.671 | 328 | 188 | 9 | 30 | 342 | 61 | 380 | 5.53e-50 | 171 |
| Msa0414780 | MtrunA17_Chr1g0208641 | 33.542 | 319 | 175 | 9 | 32 | 341 | 70 | 360 | 3.22e-49 | 169 |
| Msa0414780 | MtrunA17_Chr1g0155451 | 42.584 | 209 | 112 | 3 | 140 | 343 | 10 | 215 | 5.46e-44 | 150 |
| Msa0414780 | MtrunA17_Chr6g0455071 | 54.701 | 117 | 52 | 1 | 115 | 230 | 11 | 127 | 1.82e-40 | 138 |
| Msa0414780 | MtrunA17_Chr8g0372801 | 43.919 | 148 | 76 | 2 | 67 | 214 | 30 | 170 | 2.60e-35 | 127 |
| Msa0414780 | MtrunA17_Chr6g0455081 | 46.341 | 123 | 61 | 2 | 224 | 343 | 9 | 129 | 8.83e-30 | 110 |
| Msa0414780 | MtrunA17_Chr7g0252351 | 86.207 | 58 | 8 | 0 | 286 | 343 | 1 | 58 | 1.13e-28 | 105 |
| Msa0414780 | MtrunA17_Chr1g0155461 | 41.481 | 135 | 70 | 3 | 1 | 126 | 24 | 158 | 8.77e-27 | 104 |
| Msa0414780 | MtrunA17_Chr1g0155491 | 42.222 | 135 | 69 | 3 | 1 | 126 | 24 | 158 | 6.12e-26 | 102 |
| Msa0414780 | MtrunA17_Chr3g0099281 | 44.643 | 112 | 59 | 1 | 30 | 138 | 69 | 180 | 6.86e-25 | 99.8 |
| Msa0414780 | MtrunA17_Chr1g0155471 | 41.463 | 123 | 60 | 2 | 225 | 343 | 9 | 123 | 7.76e-22 | 89.7 |
| Msa0414780 | MtrunA17_Chr3g0099271 | 30.952 | 210 | 127 | 6 | 143 | 342 | 7 | 208 | 1.09e-18 | 83.6 |
| Msa0414780 | MtrunA17_Chr1g0155481 | 44.898 | 98 | 49 | 2 | 134 | 226 | 4 | 101 | 1.24e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414780 | AT5G66430.1 | 41.265 | 332 | 176 | 5 | 1 | 325 | 16 | 335 | 9.82e-81 | 250 |
| Msa0414780 | AT3G11480.1 | 41.379 | 348 | 184 | 5 | 1 | 343 | 46 | 378 | 5.78e-79 | 246 |
| Msa0414780 | AT5G38020.1 | 40.828 | 338 | 175 | 7 | 2 | 325 | 22 | 348 | 1.71e-78 | 245 |
| Msa0414780 | AT1G19640.1 | 40.110 | 364 | 197 | 5 | 2 | 344 | 25 | 388 | 3.57e-78 | 244 |
| Msa0414780 | AT5G38020.2 | 42.188 | 320 | 160 | 7 | 20 | 325 | 1 | 309 | 2.78e-76 | 238 |
| Msa0414780 | AT5G04370.1 | 41.092 | 348 | 186 | 7 | 1 | 343 | 56 | 389 | 7.35e-75 | 236 |
| Msa0414780 | AT5G04370.3 | 41.092 | 348 | 186 | 7 | 1 | 343 | 61 | 394 | 8.64e-75 | 236 |
| Msa0414780 | AT5G04370.2 | 41.092 | 348 | 186 | 7 | 1 | 343 | 75 | 408 | 1.02e-74 | 236 |
| Msa0414780 | AT3G21950.1 | 38.507 | 335 | 175 | 8 | 2 | 319 | 22 | 342 | 4.29e-70 | 223 |
| Msa0414780 | AT4G36470.1 | 37.883 | 359 | 195 | 9 | 1 | 345 | 27 | 371 | 1.73e-69 | 222 |
| Msa0414780 | AT5G04380.3 | 38.438 | 333 | 182 | 6 | 1 | 325 | 53 | 370 | 8.90e-68 | 218 |
| Msa0414780 | AT2G14060.1 | 36.937 | 333 | 197 | 4 | 2 | 329 | 30 | 354 | 7.13e-67 | 215 |
| Msa0414780 | AT5G04380.2 | 39.490 | 314 | 167 | 6 | 20 | 325 | 1 | 299 | 1.18e-65 | 210 |
| Msa0414780 | AT3G21950.2 | 34.877 | 367 | 176 | 9 | 2 | 319 | 22 | 374 | 1.23e-63 | 207 |
| Msa0414780 | AT5G04380.1 | 37.538 | 333 | 178 | 7 | 1 | 325 | 49 | 359 | 5.20e-63 | 205 |
| Msa0414780 | AT2G14060.2 | 42.995 | 207 | 110 | 2 | 2 | 208 | 30 | 228 | 1.20e-51 | 172 |
| Msa0414780 | AT1G15125.1 | 33.146 | 356 | 199 | 12 | 2 | 343 | 17 | 347 | 1.09e-50 | 172 |
| Msa0414780 | AT1G68040.1 | 35.093 | 322 | 174 | 10 | 16 | 328 | 49 | 344 | 3.89e-48 | 166 |
| Msa0414780 | AT5G55250.2 | 32.665 | 349 | 206 | 11 | 12 | 342 | 9 | 346 | 1.23e-47 | 164 |
| Msa0414780 | AT5G55250.1 | 32.665 | 349 | 206 | 11 | 12 | 342 | 47 | 384 | 1.50e-47 | 165 |
| Msa0414780 | AT5G38780.2 | 33.762 | 311 | 164 | 10 | 30 | 325 | 8 | 291 | 1.77e-47 | 163 |
| Msa0414780 | AT5G38780.1 | 33.742 | 326 | 173 | 11 | 15 | 325 | 43 | 340 | 2.91e-47 | 164 |
| Msa0414780 | AT5G38100.3 | 33.010 | 309 | 170 | 7 | 28 | 324 | 31 | 314 | 3.58e-47 | 163 |
| Msa0414780 | AT5G38100.1 | 32.686 | 309 | 171 | 7 | 28 | 324 | 54 | 337 | 8.77e-47 | 162 |
| Msa0414780 | AT5G37970.1 | 31.193 | 327 | 188 | 8 | 11 | 325 | 40 | 341 | 2.49e-45 | 159 |
| Msa0414780 | AT5G37990.1 | 30.696 | 316 | 182 | 8 | 20 | 323 | 49 | 339 | 7.14e-44 | 155 |
| Msa0414780 | AT3G44870.1 | 33.755 | 237 | 131 | 6 | 32 | 260 | 53 | 271 | 4.23e-36 | 134 |
| Msa0414780 | AT3G44860.1 | 33.898 | 236 | 137 | 4 | 32 | 261 | 53 | 275 | 5.92e-36 | 134 |
| Msa0414780 | AT1G66720.1 | 32.576 | 264 | 150 | 7 | 8 | 261 | 35 | 280 | 2.34e-35 | 132 |
| Msa0414780 | AT4G26420.1 | 29.141 | 326 | 197 | 12 | 18 | 320 | 37 | 351 | 8.45e-35 | 131 |
| Msa0414780 | AT1G66700.1 | 30.612 | 245 | 144 | 5 | 30 | 263 | 53 | 282 | 1.97e-33 | 127 |
| Msa0414780 | AT3G44840.1 | 32.353 | 238 | 136 | 7 | 32 | 260 | 53 | 274 | 4.13e-32 | 123 |
| Msa0414780 | AT1G15125.2 | 33.755 | 237 | 132 | 9 | 2 | 227 | 17 | 239 | 1.77e-31 | 119 |
| Msa0414780 | AT5G56300.1 | 28.618 | 304 | 191 | 8 | 31 | 319 | 68 | 360 | 1.96e-31 | 122 |
| Msa0414780 | AT1G66690.1 | 27.108 | 332 | 192 | 7 | 2 | 316 | 25 | 323 | 7.24e-31 | 120 |
| Msa0414780 | AT5G38100.2 | 33.673 | 196 | 114 | 4 | 28 | 219 | 54 | 237 | 1.01e-28 | 112 |
| Msa0414780 | AT5G38100.4 | 33.673 | 196 | 114 | 4 | 28 | 219 | 54 | 237 | 1.06e-28 | 112 |
| Msa0414780 | AT1G66700.3 | 32.749 | 171 | 98 | 3 | 30 | 196 | 53 | 210 | 9.86e-23 | 95.9 |
| Msa0414780 | AT4G26420.3 | 30.348 | 201 | 118 | 8 | 18 | 205 | 37 | 228 | 1.29e-21 | 92.8 |
| Msa0414780 | AT4G26420.2 | 30.348 | 201 | 118 | 8 | 18 | 205 | 25 | 216 | 1.86e-21 | 92.8 |
Find 74 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATTATTGGCCAAATCTT+TGG | 0.196851 | 3_2:-60566689 | None:intergenic |
| ATTCATATTATTGATATTCT+TGG | 0.221217 | 3_2:-60567932 | None:intergenic |
| TGTCAAAGGGTCTTTGAAAA+TGG | 0.236886 | 3_2:+60567887 | Msa0414780:exon |
| GCTGATTTAGGTTGCTCTTC+GGG | 0.271061 | 3_2:+60565237 | Msa0414780:CDS |
| GCATTATTGGCCAAATCTTT+GGG | 0.295693 | 3_2:-60566688 | None:intergenic |
| TGTATACTCTTGTAGAAATC+AGG | 0.313909 | 3_2:-60565402 | None:intergenic |
| TTCGGGGCCAAACACACTTT+TGG | 0.318068 | 3_2:+60565254 | Msa0414780:CDS |
| AATGAAAGTGGCAGCTATAA+TGG | 0.330658 | 3_2:+60565158 | Msa0414780:CDS |
| TACCATCAACAATATCATTA+TGG | 0.336487 | 3_2:-60567684 | None:intergenic |
| GCATTAGGCACCCAAAGATT+TGG | 0.343838 | 3_2:+60566678 | Msa0414780:intron |
| AGCTGATTTAGGTTGCTCTT+CGG | 0.346101 | 3_2:+60565236 | Msa0414780:CDS |
| TTGAGATAAATTTGAAATAC+AGG | 0.352883 | 3_2:-60565336 | None:intergenic |
| CTCCATAATGATATTGTTGA+TGG | 0.373244 | 3_2:+60567682 | Msa0414780:CDS |
| AAAGGACAAACAACAAACTA+TGG | 0.388932 | 3_2:-60567991 | None:intergenic |
| TATGATGTTCAAGATATTAG+AGG | 0.412683 | 3_2:-60565280 | None:intergenic |
| ACTTCTATTCAAGAGGTACT+TGG | 0.420566 | 3_2:+60566892 | Msa0414780:CDS |
| GAGGTGACCAAAAGTGTGTT+TGG | 0.437326 | 3_2:-60565261 | None:intergenic |
| TGATAGCCAATGTAGACAAT+AGG | 0.444967 | 3_2:-60565529 | None:intergenic |
| TGTTGAATTAAATCCTTCCT+TGG | 0.445130 | 3_2:+60568087 | Msa0414780:three_prime_UTR |
| AAAGAAGTTGATATAATTAG+TGG | 0.455446 | 3_2:-60565499 | None:intergenic |
| TATTGTATTGCTCTTGTCAA+AGG | 0.455467 | 3_2:+60567873 | Msa0414780:CDS |
| CCAAACCCGTCTATTAAAAG+AGG | 0.459322 | 3_2:-60567766 | None:intergenic |
| ATTGTATTGCTCTTGTCAAA+GGG | 0.486886 | 3_2:+60567874 | Msa0414780:CDS |
| ATGATGGTACTAACATTCAT+TGG | 0.488849 | 3_2:+60566847 | Msa0414780:CDS |
| CCACTGGATGGGTGGCACTT+TGG | 0.490206 | 3_2:-60565081 | None:intergenic |
| CTTTGAAAATGGTAAGATGA+AGG | 0.499727 | 3_2:+60567898 | Msa0414780:exon |
| CGGGTTTGGTGAAAATATCA+TGG | 0.505556 | 3_2:+60567780 | Msa0414780:CDS |
| ATTCCTCCTATTGTCTACAT+TGG | 0.506279 | 3_2:+60565523 | Msa0414780:CDS |
| TCATGGATGAATTGTTCTCA+AGG | 0.510601 | 3_2:+60567797 | Msa0414780:CDS |
| TACTGTAGAGGAAGTAAGAC+AGG | 0.513463 | 3_2:+60567591 | Msa0414780:CDS |
| TGAAATTACTTCTATTCAAG+AGG | 0.513593 | 3_2:+60566885 | Msa0414780:CDS |
| TTTGCAGGGTTTAGTTGAAG+AGG | 0.515370 | 3_2:+60567531 | Msa0414780:intron |
| ACAACCATTAAAAGTTGTGT+TGG | 0.517417 | 3_2:-60565205 | None:intergenic |
| TTGTTGATAGCAAAATGAGA+GGG | 0.521512 | 3_2:+60567707 | Msa0414780:CDS |
| CAAGAGAAAGGAGAAAATGT+TGG | 0.527738 | 3_2:+60565426 | Msa0414780:CDS |
| GAGAAAAGTGATAATGAAAG+TGG | 0.534714 | 3_2:+60565146 | Msa0414780:CDS |
| AAGAGTATACAACAAGAGAA+AGG | 0.535416 | 3_2:+60565414 | Msa0414780:CDS |
| TAACATCACATACCACTGGA+TGG | 0.538898 | 3_2:-60565093 | None:intergenic |
| AATAGTATCAGATGGTATGA+TGG | 0.539204 | 3_2:+60566831 | Msa0414780:CDS |
| AAAACAATACAAGAATGAAA+AGG | 0.540005 | 3_2:-60568009 | None:intergenic |
| GGAAGTAAGACAGGTGATTG+AGG | 0.540798 | 3_2:+60567600 | Msa0414780:CDS |
| TTTGAAATACAGGTGTCTCA+TGG | 0.549266 | 3_2:-60565326 | None:intergenic |
| CTGATTTAGGTTGCTCTTCG+GGG | 0.551359 | 3_2:+60565238 | Msa0414780:CDS |
| AAAGTTGTGTTGGACATCAA+CGG | 0.558540 | 3_2:-60565195 | None:intergenic |
| ATAATAACATCACATACCAC+TGG | 0.559034 | 3_2:-60565097 | None:intergenic |
| TAAATATTTCCCTTGTTGAG+TGG | 0.563971 | 3_2:-60566715 | None:intergenic |
| GAATCAAAAGTAGAATAAGA+TGG | 0.564014 | 3_2:+60567951 | Msa0414780:three_prime_UTR |
| GTATACTCTTGTAGAAATCA+GGG | 0.567996 | 3_2:-60565401 | None:intergenic |
| ATCACATACCACTGGATGGG+TGG | 0.568142 | 3_2:-60565089 | None:intergenic |
| TAATGCAAAACCACTCAACA+AGG | 0.577573 | 3_2:+60566705 | Msa0414780:CDS |
| TATTCAAGAGGTACTTGGCA+TGG | 0.581041 | 3_2:+60566897 | Msa0414780:CDS |
| TGCTTCATAAATGCAACACC+CGG | 0.583899 | 3_2:+60565453 | Msa0414780:CDS |
| AACATCACATACCACTGGAT+GGG | 0.585591 | 3_2:-60565092 | None:intergenic |
| TGTCTTACTTCCTCTACAGT+AGG | 0.593467 | 3_2:-60567589 | None:intergenic |
| TTCGAAGAAATAGTATCAGA+TGG | 0.593783 | 3_2:+60566823 | Msa0414780:CDS |
| AAGAAGTTGATATAATTAGT+GGG | 0.594084 | 3_2:-60565498 | None:intergenic |
| TAGCCAATGTAGACAATAGG+AGG | 0.595619 | 3_2:-60565526 | None:intergenic |
| TCTACAGTAGGATGGTATGT+TGG | 0.603625 | 3_2:-60567577 | None:intergenic |
| AAATATGCTTTATACACCGA+TGG | 0.609341 | 3_2:-60566757 | None:intergenic |
| ATCAAGAACAAGTCCTCCAT+CGG | 0.612922 | 3_2:+60566741 | Msa0414780:CDS |
| CTCTGCATAAAGTTTCGATG+AGG | 0.614376 | 3_2:-60565126 | None:intergenic |
| CATCAACAATATCATTATGG+AGG | 0.614744 | 3_2:-60567681 | None:intergenic |
| AGACAGGTGATTGAGGCAGA+AGG | 0.615417 | 3_2:+60567607 | Msa0414780:CDS |
| AACATACCATCCTACTGTAG+AGG | 0.616142 | 3_2:+60567579 | Msa0414780:CDS |
| ATTAACAATGAGATGAGCCA+AGG | 0.618760 | 3_2:-60568104 | None:intergenic |
| TTACTTCCTCTACAGTAGGA+TGG | 0.618977 | 3_2:-60567585 | None:intergenic |
| ATTGTTGATAGCAAAATGAG+AGG | 0.619009 | 3_2:+60567706 | Msa0414780:CDS |
| ACAATGAGATGAGCCAAGGA+AGG | 0.622394 | 3_2:-60568100 | None:intergenic |
| TGGCATGGTACTCAACGAGA+TGG | 0.637697 | 3_2:+60566912 | Msa0414780:CDS |
| TATGCTTTATACACCGATGG+AGG | 0.647555 | 3_2:-60566754 | None:intergenic |
| CCAAAGTGCCACCCATCCAG+TGG | 0.655552 | 3_2:+60565081 | Msa0414780:five_prime_UTR |
| AATGCAAAACCACTCAACAA+GGG | 0.683152 | 3_2:+60566706 | Msa0414780:CDS |
| TGTTGATAGCAAAATGAGAG+GGG | 0.689070 | 3_2:+60567708 | Msa0414780:CDS |
| ACTCAACGAGATGGTCCAAG+AGG | 0.710119 | 3_2:+60566921 | Msa0414780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAATTAATAAAAA+GGG | - | chr3_2:60565949-60565968 | None:intergenic | 0.0% |
| !! | TAAAAAAAAAATTAATAAAA+AGG | - | chr3_2:60565950-60565969 | None:intergenic | 0.0% |
| !! | TATAAATAATTTATATTATA+CGG | - | chr3_2:60566638-60566657 | None:intergenic | 0.0% |
| !! | AGTTAAAATAAATAAATATG+GGG | - | chr3_2:60566091-60566110 | None:intergenic | 10.0% |
| !! | TAAAACATTCTTATTAATTA+TGG | - | chr3_2:60567323-60567342 | None:intergenic | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGC+GGG | - | chr3_2:60566063-60566082 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+CGG | - | chr3_2:60566064-60566083 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr3_2:60566064-60566083 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr3_2:60566064-60566083 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr3_2:60566064-60566083 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr3_2:60566064-60566083 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr3_2:60566064-60566083 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr3_2:60566064-60566083 | None:intergenic | 100.0% |
| !! | TTAAAATAAATAAATATGGG+GGG | - | chr3_2:60566089-60566108 | None:intergenic | 15.0% |
| !! | GTTAAAATAAATAAATATGG+GGG | - | chr3_2:60566090-60566109 | None:intergenic | 15.0% |
| !! | TTTCAAAACAAAAATCTTAT+CGG | + | chr3_2:60567000-60567019 | Msa0414780:intron | 15.0% |
| !! | GATTAAAATGCAATAAATAA+GGG | - | chr3_2:60567277-60567296 | None:intergenic | 15.0% |
| !! | TGATTAAAATGCAATAAATA+AGG | - | chr3_2:60567278-60567297 | None:intergenic | 15.0% |
| !!! | ATTAATAGTGTTGATTTTAA+TGG | - | chr3_2:60567368-60567387 | None:intergenic | 15.0% |
| !! | ATAAGGAATCTTTATAAAAA+AGG | - | chr3_2:60567509-60567528 | None:intergenic | 15.0% |
| !! | ATTCATATTATTGATATTCT+TGG | - | chr3_2:60567935-60567954 | None:intergenic | 15.0% |
| !!! | TTGAGATAAATTTGAAATAC+AGG | - | chr3_2:60565339-60565358 | None:intergenic | 20.0% |
| !!! | AAGAAGTTGATATAATTAGT+GGG | - | chr3_2:60565501-60565520 | None:intergenic | 20.0% |
| !!! | AAAGAAGTTGATATAATTAG+TGG | - | chr3_2:60565502-60565521 | None:intergenic | 20.0% |
| !!! | GATTTTGTTATTCAACAATA+GGG | + | chr3_2:60565592-60565611 | Msa0414780:intron | 20.0% |
| !! | TAAAATAAATAAATATGGGG+GGG | - | chr3_2:60566088-60566107 | None:intergenic | 20.0% |
| !!! | TAGATTACCTTATAGTTTTT+AGG | + | chr3_2:60566129-60566148 | Msa0414780:intron | 20.0% |
| !!! | CTTTTACTAAAATCCTTAAA+AGG | + | chr3_2:60566167-60566186 | Msa0414780:intron | 20.0% |
| !!! | TGATTGATTAACTAGTTTTT+AGG | - | chr3_2:60566415-60566434 | None:intergenic | 20.0% |
| !! | AAAAACTAGTTAATCAATCA+TGG | + | chr3_2:60566415-60566434 | Msa0414780:intron | 20.0% |
| !!! | TCTTTGTTCTTTAATTTGAT+TGG | + | chr3_2:60566461-60566480 | Msa0414780:intron | 20.0% |
| !!! | TATTTGAAGTTCATCTTTTA+TGG | + | chr3_2:60566656-60566675 | Msa0414780:intron | 20.0% |
| !! | AAGGTTTAAACTATTGTAAA+AGG | - | chr3_2:60567078-60567097 | None:intergenic | 20.0% |
| !! | GTTATTCACGTTTAAAAATA+TGG | + | chr3_2:60567138-60567157 | Msa0414780:intron | 20.0% |
| !! | TTCTTATTAATTATGGTTAG+TGG | - | chr3_2:60567316-60567335 | None:intergenic | 20.0% |
| !! | ATTGAACGACATTATATTAT+AGG | + | chr3_2:60567428-60567447 | Msa0414780:intron | 20.0% |
| !!! | AGCAATGAAAACTTTTAAAA+TGG | + | chr3_2:60567645-60567664 | Msa0414780:CDS | 20.0% |
| !!! | GCAATGAAAACTTTTAAAAT+GGG | + | chr3_2:60567646-60567665 | Msa0414780:CDS | 20.0% |
| !! | AAAACAATACAAGAATGAAA+AGG | - | chr3_2:60568012-60568031 | None:intergenic | 20.0% |
| !!! | TGTTTTAAAGTAGCTGATTT+AGG | + | chr3_2:60565225-60565244 | Msa0414780:CDS | 25.0% |
| ! | TATGATGTTCAAGATATTAG+AGG | - | chr3_2:60565283-60565302 | None:intergenic | 25.0% |
| ! | CCATGCTTAAATTTAAATCT+TGG | - | chr3_2:60565573-60565592 | None:intergenic | 25.0% |
| ! | CCAAGATTTAAATTTAAGCA+TGG | + | chr3_2:60565570-60565589 | Msa0414780:intron | 25.0% |
| !!! | GGATTTTGTTATTCAACAAT+AGG | + | chr3_2:60565591-60565610 | Msa0414780:intron | 25.0% |
| ! | AAAATAAATAAATATGGGGG+GGG | - | chr3_2:60566087-60566106 | None:intergenic | 25.0% |
| ! | ATTTACGCCTAAAAACTATA+AGG | - | chr3_2:60566139-60566158 | None:intergenic | 25.0% |
| !! | TTTGTTTGTGATTCTAGTTA+AGG | - | chr3_2:60566250-60566269 | None:intergenic | 25.0% |
| ! | AGAATCACAAACAAATTTCT+AGG | + | chr3_2:60566255-60566274 | Msa0414780:intron | 25.0% |
| !! | TTCAATTGAGATTCTAGTTA+AGG | + | chr3_2:60566298-60566317 | Msa0414780:intron | 25.0% |
| !! | CACTTTCTTTTTGTCTTTTA+AGG | + | chr3_2:60566361-60566380 | Msa0414780:intron | 25.0% |
| ! | ACGGAATATTACTTAAAAAC+TGG | - | chr3_2:60566619-60566638 | None:intergenic | 25.0% |
| ! | TGAAATTACTTCTATTCAAG+AGG | + | chr3_2:60566885-60566904 | Msa0414780:CDS | 25.0% |
| ! | ACTATTGTAAAAGGAAACTA+GGG | - | chr3_2:60567069-60567088 | None:intergenic | 25.0% |
| ! | AACTATTGTAAAAGGAAACT+AGG | - | chr3_2:60567070-60567089 | None:intergenic | 25.0% |
| ! | AACGTGAATAACTAGTTATA+TGG | - | chr3_2:60567130-60567149 | None:intergenic | 25.0% |
| ! | AAAGAGACAACAAAAAAATC+AGG | - | chr3_2:60567211-60567230 | None:intergenic | 25.0% |
| !! | AATAAATAAGGGTATGTAAG+TGG | - | chr3_2:60567266-60567285 | None:intergenic | 25.0% |
| !! | AACAAACTATGAGTTTTACA+CGG | - | chr3_2:60567405-60567424 | None:intergenic | 25.0% |
| !! | AAAGATTCCTTATAATTTGC+AGG | + | chr3_2:60567516-60567535 | Msa0414780:intron | 25.0% |
| !! | AAGATTCCTTATAATTTGCA+GGG | + | chr3_2:60567517-60567536 | Msa0414780:intron | 25.0% |
| !!! | TGAAAACTTTTAAAATGGGT+TGG | + | chr3_2:60567650-60567669 | Msa0414780:CDS | 25.0% |
| !!! | GAAAACTTTTAAAATGGGTT+GGG | + | chr3_2:60567651-60567670 | Msa0414780:CDS | 25.0% |
| ! | TACCATCAACAATATCATTA+TGG | - | chr3_2:60567687-60567706 | None:intergenic | 25.0% |
| !! | TTTGAACCTCTTTTAATAGA+CGG | + | chr3_2:60567760-60567779 | Msa0414780:CDS | 25.0% |
| ! | GAATCAAAAGTAGAATAAGA+TGG | + | chr3_2:60567951-60567970 | Msa0414780:three_prime_UTR | 25.0% |
| !!! | TCTTGTATTGTTTTAACACA+TGG | + | chr3_2:60568018-60568037 | Msa0414780:three_prime_UTR | 25.0% |
| ATAATAACATCACATACCAC+TGG | - | chr3_2:60565100-60565119 | None:intergenic | 30.0% | |
| ! | GAGAAAAGTGATAATGAAAG+TGG | + | chr3_2:60565146-60565165 | Msa0414780:CDS | 30.0% |
| ! | ATGTCCAACACAACTTTTAA+TGG | + | chr3_2:60565201-60565220 | Msa0414780:CDS | 30.0% |
| ACAACCATTAAAAGTTGTGT+TGG | - | chr3_2:60565208-60565227 | None:intergenic | 30.0% | |
| GTATACTCTTGTAGAAATCA+GGG | - | chr3_2:60565404-60565423 | None:intergenic | 30.0% | |
| TGTATACTCTTGTAGAAATC+AGG | - | chr3_2:60565405-60565424 | None:intergenic | 30.0% | |
| ! | AAGAGTATACAACAAGAGAA+AGG | + | chr3_2:60565414-60565433 | Msa0414780:CDS | 30.0% |
| !! | AGTAATGTTTTAGACCAAGT+TGG | + | chr3_2:60565632-60565651 | Msa0414780:intron | 30.0% |
| GGTTAATGATTGTTCTTAGT+TGG | - | chr3_2:60565659-60565678 | None:intergenic | 30.0% | |
| AGAACAATCATTAACCAAGA+AGG | + | chr3_2:60565663-60565682 | Msa0414780:intron | 30.0% | |
| TAATATGATATGAGCCTTCT+TGG | - | chr3_2:60565680-60565699 | None:intergenic | 30.0% | |
| AGGCTCATATCATATTATCA+AGG | + | chr3_2:60565683-60565702 | Msa0414780:intron | 30.0% | |
| ATCGTTCATTTGAGAACAAA+CGG | + | chr3_2:60565780-60565799 | Msa0414780:intron | 30.0% | |
| AAATAAATAAATATGGGGGG+GGG | - | chr3_2:60566086-60566105 | None:intergenic | 30.0% | |
| ! | CACTTTCTTTTTGCCTTTTA+AGG | - | chr3_2:60566183-60566202 | None:intergenic | 30.0% |
| AACAAAGATAAAGAGAGTAG+AGG | - | chr3_2:60566449-60566468 | None:intergenic | 30.0% | |
| ACATGTGGAACAAATAAAGA+TGG | - | chr3_2:60566560-60566579 | None:intergenic | 30.0% | |
| ! | AGTTCATCTTTTATGGCATT+AGG | + | chr3_2:60566663-60566682 | Msa0414780:intron | 30.0% |
| TAAATATTTCCCTTGTTGAG+TGG | - | chr3_2:60566718-60566737 | None:intergenic | 30.0% | |
| AAATATGCTTTATACACCGA+TGG | - | chr3_2:60566760-60566779 | None:intergenic | 30.0% | |
| TTCGAAGAAATAGTATCAGA+TGG | + | chr3_2:60566823-60566842 | Msa0414780:CDS | 30.0% | |
| AATAGTATCAGATGGTATGA+TGG | + | chr3_2:60566831-60566850 | Msa0414780:CDS | 30.0% | |
| ATGATGGTACTAACATTCAT+TGG | + | chr3_2:60566847-60566866 | Msa0414780:CDS | 30.0% | |
| CAAAGCTTATATTTACCTCT+TGG | - | chr3_2:60566939-60566958 | None:intergenic | 30.0% | |
| AATGATAGACATGTGATATG+AGG | - | chr3_2:60567026-60567045 | None:intergenic | 30.0% | |
| AGAAAACATCTATTGTGAGA+CGG | - | chr3_2:60567186-60567205 | None:intergenic | 30.0% | |
| ACTAAACCCTGCAAATTATA+AGG | - | chr3_2:60567526-60567545 | None:intergenic | 30.0% | |
| CATCAACAATATCATTATGG+AGG | - | chr3_2:60567684-60567703 | None:intergenic | 30.0% | |
| CTCCATAATGATATTGTTGA+TGG | + | chr3_2:60567682-60567701 | Msa0414780:CDS | 30.0% | |
| !! | ATTGTTGATAGCAAAATGAG+AGG | + | chr3_2:60567706-60567725 | Msa0414780:CDS | 30.0% |
| !! | TTGTTGATAGCAAAATGAGA+GGG | + | chr3_2:60567707-60567726 | Msa0414780:CDS | 30.0% |
| ! | TTGAACCTCTTTTAATAGAC+GGG | + | chr3_2:60567761-60567780 | Msa0414780:CDS | 30.0% |
| TATTGTATTGCTCTTGTCAA+AGG | + | chr3_2:60567873-60567892 | Msa0414780:CDS | 30.0% | |
| ATTGTATTGCTCTTGTCAAA+GGG | + | chr3_2:60567874-60567893 | Msa0414780:CDS | 30.0% | |
| ! | CTTTGAAAATGGTAAGATGA+AGG | + | chr3_2:60567898-60567917 | Msa0414780:exon | 30.0% |
| AAAGGACAAACAACAAACTA+TGG | - | chr3_2:60567994-60568013 | None:intergenic | 30.0% | |
| TGTTGAATTAAATCCTTCCT+TGG | + | chr3_2:60568087-60568106 | Msa0414780:three_prime_UTR | 30.0% | |
| AATGAAAGTGGCAGCTATAA+TGG | + | chr3_2:60565158-60565177 | Msa0414780:CDS | 35.0% | |
| AAAGTTGTGTTGGACATCAA+CGG | - | chr3_2:60565198-60565217 | None:intergenic | 35.0% | |
| ! | TTTGAAATACAGGTGTCTCA+TGG | - | chr3_2:60565329-60565348 | None:intergenic | 35.0% |
| CAAGAGAAAGGAGAAAATGT+TGG | + | chr3_2:60565426-60565445 | Msa0414780:CDS | 35.0% | |
| AGTCGTCCATAAAAATTTCC+GGG | - | chr3_2:60565474-60565493 | None:intergenic | 35.0% | |
| GAGTCGTCCATAAAAATTTC+CGG | - | chr3_2:60565475-60565494 | None:intergenic | 35.0% | |
| ATTCCTCCTATTGTCTACAT+TGG | + | chr3_2:60565523-60565542 | Msa0414780:CDS | 35.0% | |
| TGATAGCCAATGTAGACAAT+AGG | - | chr3_2:60565532-60565551 | None:intergenic | 35.0% | |
| ACATTACTTGACCATCCTAA+GGG | - | chr3_2:60565620-60565639 | None:intergenic | 35.0% | |
| AACATTACTTGACCATCCTA+AGG | - | chr3_2:60565621-60565640 | None:intergenic | 35.0% | |
| AAATCAGAATAGAGAAGGTG+TGG | - | chr3_2:60565725-60565744 | None:intergenic | 35.0% | |
| ACACCTTCTCTATTCTGATT+TGG | + | chr3_2:60565724-60565743 | Msa0414780:intron | 35.0% | |
| ACACCAAATCAGAATAGAGA+AGG | - | chr3_2:60565730-60565749 | None:intergenic | 35.0% | |
| !! | GCTAGTCGTACAATTTTGAT+CGG | + | chr3_2:60565839-60565858 | Msa0414780:intron | 35.0% |
| TTATGATCCTACTTGATCGA+TGG | - | chr3_2:60565909-60565928 | None:intergenic | 35.0% | |
| AATAAATAAATATGGGGGGG+GGG | - | chr3_2:60566085-60566104 | None:intergenic | 35.0% | |
| TTCTAGGTGAAATTGCAATG+AGG | + | chr3_2:60566271-60566290 | Msa0414780:intron | 35.0% | |
| ! | ATACACTTGCTTGCTAGATT+TGG | + | chr3_2:60566491-60566510 | Msa0414780:intron | 35.0% |
| AAAATCGACAAGACAACATG+TGG | - | chr3_2:60566575-60566594 | None:intergenic | 35.0% | |
| GCATTATTGGCCAAATCTTT+GGG | - | chr3_2:60566691-60566710 | None:intergenic | 35.0% | |
| TGCATTATTGGCCAAATCTT+TGG | - | chr3_2:60566692-60566711 | None:intergenic | 35.0% | |
| !! | GTTGAGTGGTTTTGCATTAT+TGG | - | chr3_2:60566704-60566723 | None:intergenic | 35.0% |
| TAATGCAAAACCACTCAACA+AGG | + | chr3_2:60566705-60566724 | Msa0414780:CDS | 35.0% | |
| AATGCAAAACCACTCAACAA+GGG | + | chr3_2:60566706-60566725 | Msa0414780:CDS | 35.0% | |
| !! | ACTTCTATTCAAGAGGTACT+TGG | + | chr3_2:60566892-60566911 | Msa0414780:CDS | 35.0% |
| !! | TGTTGATAGCAAAATGAGAG+GGG | + | chr3_2:60567708-60567727 | Msa0414780:CDS | 35.0% |
| TCATGGATGAATTGTTCTCA+AGG | + | chr3_2:60567797-60567816 | Msa0414780:CDS | 35.0% | |
| ! | TGTCAAAGGGTCTTTGAAAA+TGG | + | chr3_2:60567887-60567906 | Msa0414780:exon | 35.0% |
| AACATCACATACCACTGGAT+GGG | - | chr3_2:60565095-60565114 | None:intergenic | 40.0% | |
| TAACATCACATACCACTGGA+TGG | - | chr3_2:60565096-60565115 | None:intergenic | 40.0% | |
| CTCTGCATAAAGTTTCGATG+AGG | - | chr3_2:60565129-60565148 | None:intergenic | 40.0% | |
| !! | AGCTGATTTAGGTTGCTCTT+CGG | + | chr3_2:60565236-60565255 | Msa0414780:CDS | 40.0% |
| TGCTTCATAAATGCAACACC+CGG | + | chr3_2:60565453-60565472 | Msa0414780:CDS | 40.0% | |
| ! | GCAACACCCGGAAATTTTTA+TGG | + | chr3_2:60565465-60565484 | Msa0414780:CDS | 40.0% |
| TAGCCAATGTAGACAATAGG+AGG | - | chr3_2:60565529-60565548 | None:intergenic | 40.0% | |
| ! | TTCAACAATAGGGTACCCTT+AGG | + | chr3_2:60565602-60565621 | Msa0414780:intron | 40.0% |
| TGTTCTTAGTTGGACCAACT+TGG | - | chr3_2:60565649-60565668 | None:intergenic | 40.0% | |
| AGAAAGCAGATTTCCTGAAC+AGG | - | chr3_2:60565876-60565895 | None:intergenic | 40.0% | |
| ACTTGATCGATGGTGATAGA+AGG | - | chr3_2:60565899-60565918 | None:intergenic | 40.0% | |
| TCTATCACCATCGATCAAGT+AGG | + | chr3_2:60565899-60565918 | Msa0414780:intron | 40.0% | |
| ! | TGTTGAGAGTTGACTTCAAC+GGG | - | chr3_2:60566031-60566050 | None:intergenic | 40.0% |
| ! | GTGTTGAGAGTTGACTTCAA+CGG | - | chr3_2:60566032-60566051 | None:intergenic | 40.0% |
| ATAAATAAATATGGGGGGGG+GGG | - | chr3_2:60566084-60566103 | None:intergenic | 40.0% | |
| ! | TTGCTTGCTAGATTTGGTCT+TGG | + | chr3_2:60566497-60566516 | Msa0414780:intron | 40.0% |
| ATCAAGAACAAGTCCTCCAT+CGG | + | chr3_2:60566741-60566760 | Msa0414780:CDS | 40.0% | |
| TATGCTTTATACACCGATGG+AGG | - | chr3_2:60566757-60566776 | None:intergenic | 40.0% | |
| !! | TATTCAAGAGGTACTTGGCA+TGG | + | chr3_2:60566897-60566916 | Msa0414780:CDS | 40.0% |
| AAACATCTATTGTGAGACGG+AGG | - | chr3_2:60567183-60567202 | None:intergenic | 40.0% | |
| TTTGCAGGGTTTAGTTGAAG+AGG | + | chr3_2:60567531-60567550 | Msa0414780:intron | 40.0% | |
| TCTACAGTAGGATGGTATGT+TGG | - | chr3_2:60567580-60567599 | None:intergenic | 40.0% | |
| AACATACCATCCTACTGTAG+AGG | + | chr3_2:60567579-60567598 | Msa0414780:CDS | 40.0% | |
| TTACTTCCTCTACAGTAGGA+TGG | - | chr3_2:60567588-60567607 | None:intergenic | 40.0% | |
| TGTCTTACTTCCTCTACAGT+AGG | - | chr3_2:60567592-60567611 | None:intergenic | 40.0% | |
| TACTGTAGAGGAAGTAAGAC+AGG | + | chr3_2:60567591-60567610 | Msa0414780:CDS | 40.0% | |
| AAAAACAGCTCTGTGGTACT+TGG | - | chr3_2:60567743-60567762 | None:intergenic | 40.0% | |
| CCAAACCCGTCTATTAAAAG+AGG | - | chr3_2:60567769-60567788 | None:intergenic | 40.0% | |
| !! | CCTCTTTTAATAGACGGGTT+TGG | + | chr3_2:60567766-60567785 | Msa0414780:CDS | 40.0% |
| !! | CGGGTTTGGTGAAAATATCA+TGG | + | chr3_2:60567780-60567799 | Msa0414780:CDS | 40.0% |
| !! | GCTGATTTAGGTTGCTCTTC+GGG | + | chr3_2:60565237-60565256 | Msa0414780:CDS | 45.0% |
| !! | CTGATTTAGGTTGCTCTTCG+GGG | + | chr3_2:60565238-60565257 | Msa0414780:CDS | 45.0% |
| ! | GAGGTGACCAAAAGTGTGTT+TGG | - | chr3_2:60565264-60565283 | None:intergenic | 45.0% |
| ! | ACAATAGGGTACCCTTAGGA+TGG | + | chr3_2:60565606-60565625 | Msa0414780:intron | 45.0% |
| GAGATCAACACTCAACACCA+TGG | + | chr3_2:60565996-60566015 | Msa0414780:intron | 45.0% | |
| TCAACACTCAACACCATGGA+TGG | + | chr3_2:60566000-60566019 | Msa0414780:intron | 45.0% | |
| CAACACTCAACACCATGGAT+GGG | + | chr3_2:60566001-60566020 | Msa0414780:intron | 45.0% | |
| ! | GTTGAGAGTTGACTTCAACG+GGG | - | chr3_2:60566030-60566049 | None:intergenic | 45.0% |
| GAAGTCAACTCTCAACACCA+TGG | + | chr3_2:60566034-60566053 | Msa0414780:intron | 45.0% | |
| TAAATAAATATGGGGGGGGG+GGG | - | chr3_2:60566083-60566102 | None:intergenic | 45.0% | |
| GCATTAGGCACCCAAAGATT+TGG | + | chr3_2:60566678-60566697 | Msa0414780:intron | 45.0% | |
| GGAAGTAAGACAGGTGATTG+AGG | + | chr3_2:60567600-60567619 | Msa0414780:CDS | 45.0% | |
| GAGGTTCAAAAACAGCTCTG+TGG | - | chr3_2:60567750-60567769 | None:intergenic | 45.0% | |
| ACAATGAGATGAGCCAAGGA+AGG | - | chr3_2:60568103-60568122 | None:intergenic | 45.0% | |
| !! | AAGTTAAAATAAATAAATAT+GGG | - | chr3_2:60566092-60566111 | None:intergenic | 5.0% |
| !! | AAAGTTAAAATAAATAAATA+TGG | - | chr3_2:60566093-60566112 | None:intergenic | 5.0% |
| !!! | AATGTTTAATTTTTATTTTT+AGG | - | chr3_2:60566982-60567001 | None:intergenic | 5.0% |
| !! | TATCAATATAAATTTATAAA+AGG | - | chr3_2:60567097-60567116 | None:intergenic | 5.0% |
| ATCACATACCACTGGATGGG+TGG | - | chr3_2:60565092-60565111 | None:intergenic | 50.0% | |
| ! | TTCGGGGCCAAACACACTTT+TGG | + | chr3_2:60565254-60565273 | Msa0414780:CDS | 50.0% |
| ! | GAGAAGGTGTGGATCTAGTG+TGG | - | chr3_2:60565714-60565733 | None:intergenic | 50.0% |
| AAATAAATATGGGGGGGGGG+GGG | - | chr3_2:60566082-60566101 | None:intergenic | 50.0% | |
| TGGCATGGTACTCAACGAGA+TGG | + | chr3_2:60566912-60566931 | Msa0414780:CDS | 50.0% | |
| ACTCAACGAGATGGTCCAAG+AGG | + | chr3_2:60566921-60566940 | Msa0414780:CDS | 50.0% | |
| AGACAGGTGATTGAGGCAGA+AGG | + | chr3_2:60567607-60567626 | Msa0414780:CDS | 50.0% | |
| GGACGACTCACATCCTGTTC+AGG | + | chr3_2:60565860-60565879 | Msa0414780:intron | 55.0% | |
| TCAACGGGGTAACCCATCCA+TGG | - | chr3_2:60566016-60566035 | None:intergenic | 55.0% | |
| AATAAATATGGGGGGGGGGG+GGG | - | chr3_2:60566081-60566100 | None:intergenic | 55.0% | |
| CCACTGGATGGGTGGCACTT+TGG | - | chr3_2:60565084-60565103 | None:intergenic | 60.0% | |
| ! | CCAAAGTGCCACCCATCCAG+TGG | + | chr3_2:60565081-60565100 | Msa0414780:five_prime_UTR | 60.0% |
| ATAAATATGGGGGGGGGGGG+GGG | - | chr3_2:60566080-60566099 | None:intergenic | 60.0% | |
| TAAATATGGGGGGGGGGGGG+GGG | - | chr3_2:60566079-60566098 | None:intergenic | 65.0% | |
| AAATATGGGGGGGGGGGGGG+GGG | - | chr3_2:60566078-60566097 | None:intergenic | 70.0% | |
| AATATGGGGGGGGGGGGGGG+GGG | - | chr3_2:60566077-60566096 | None:intergenic | 75.0% | |
| ! | ATATGGGGGGGGGGGGGGGG+GGG | - | chr3_2:60566076-60566095 | None:intergenic | 80.0% |
| ! | GGGGGGGGGGCGGGCATCCA+TGG | - | chr3_2:60566054-60566073 | None:intergenic | 85.0% |
| ! | TATGGGGGGGGGGGGGGGGG+GGG | - | chr3_2:60566075-60566094 | None:intergenic | 85.0% |
| ! | ATGGGGGGGGGGGGGGGGGG+GGG | - | chr3_2:60566074-60566093 | None:intergenic | 90.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | - | chr3_2:60566073-60566092 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 60565071 | 60568124 | 60565071 | ID=Msa0414780;Name=Msa0414780 |
| chr3_2 | mRNA | 60565071 | 60568124 | 60565071 | ID=Msa0414780-mRNA-1;Parent=Msa0414780;Name=Msa0414780-mRNA-1;_AED=0.04;_eAED=0.04;_QI=70|1|1|1|1|1|3|221|345 |
| chr3_2 | exon | 60565071 | 60565554 | 60565071 | ID=Msa0414780-mRNA-1:exon:12636;Parent=Msa0414780-mRNA-1 |
| chr3_2 | exon | 60566685 | 60566942 | 60566685 | ID=Msa0414780-mRNA-1:exon:12637;Parent=Msa0414780-mRNA-1 |
| chr3_2 | exon | 60567538 | 60568124 | 60567538 | ID=Msa0414780-mRNA-1:exon:12638;Parent=Msa0414780-mRNA-1 |
| chr3_2 | five_prime_UTR | 60565071 | 60565140 | 60565071 | ID=Msa0414780-mRNA-1:five_prime_utr;Parent=Msa0414780-mRNA-1 |
| chr3_2 | CDS | 60565141 | 60565554 | 60565141 | ID=Msa0414780-mRNA-1:cds;Parent=Msa0414780-mRNA-1 |
| chr3_2 | CDS | 60566685 | 60566942 | 60566685 | ID=Msa0414780-mRNA-1:cds;Parent=Msa0414780-mRNA-1 |
| chr3_2 | CDS | 60567538 | 60567903 | 60567538 | ID=Msa0414780-mRNA-1:cds;Parent=Msa0414780-mRNA-1 |
| chr3_2 | three_prime_UTR | 60567904 | 60568124 | 60567904 | ID=Msa0414780-mRNA-1:three_prime_utr;Parent=Msa0414780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
