Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366870 | XP_013460477.2 | 96.812 | 345 | 8 | 1 | 1 | 345 | 24 | 365 | 0.0 | 687 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366870 | sp|A0A096VHY7|XMT2_COFAR | 42.165 | 351 | 191 | 4 | 5 | 343 | 28 | 378 | 3.46e-94 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366870 | A0A396IQF1 | 97.101 | 345 | 7 | 1 | 1 | 345 | 1 | 342 | 0.0 | 687 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014410 | Msa0366870 | 0.831000 | 2.138570e-55 | -8.615850e-47 |
| Msa0043940 | Msa0366870 | 0.817931 | 2.552647e-52 | -8.615850e-47 |
| Msa0050720 | Msa0366870 | 0.821104 | 4.820522e-53 | -8.615850e-47 |
| Msa0050770 | Msa0366870 | 0.822488 | 2.306520e-53 | -8.615850e-47 |
| Msa0064550 | Msa0366870 | 0.809071 | 2.267932e-50 | -8.615850e-47 |
| Msa0108070 | Msa0366870 | 0.801028 | 1.092227e-48 | -8.615850e-47 |
| Msa0109490 | Msa0366870 | 0.826040 | 3.373993e-54 | -8.615850e-47 |
| Msa0111310 | Msa0366870 | 0.801997 | 6.913251e-49 | -8.615850e-47 |
| Msa0154240 | Msa0366870 | 0.821482 | 3.944839e-53 | -8.615850e-47 |
| Msa0154270 | Msa0366870 | 0.811940 | 5.445636e-51 | -8.615850e-47 |
| Msa0155610 | Msa0366870 | 0.808565 | 2.910215e-50 | -8.615850e-47 |
| Msa0178350 | Msa0366870 | 0.823275 | 1.512377e-53 | -8.615850e-47 |
| Msa0182640 | Msa0366870 | 0.800038 | 1.738570e-48 | -8.615850e-47 |
| Msa0199730 | Msa0366870 | 0.816569 | 5.170079e-52 | -8.615850e-47 |
| Msa0216210 | Msa0366870 | 0.800096 | 1.691796e-48 | -8.615850e-47 |
| Msa0222660 | Msa0366870 | 0.817316 | 3.512504e-52 | -8.615850e-47 |
| Msa0366470 | Msa0366870 | 0.805730 | 1.159123e-49 | -8.615850e-47 |
| Msa0366870 | Msa0401340 | 0.802358 | 5.827859e-49 | -8.615850e-47 |
| Msa0366870 | Msa0414780 | 0.862233 | 5.856839e-64 | -8.615850e-47 |
| Msa0366870 | Msa0431520 | 0.804170 | 2.456456e-49 | -8.615850e-47 |
| Msa0366870 | Msa0432720 | 0.806486 | 8.037809e-50 | -8.615850e-47 |
| Msa0366870 | Msa0448120 | 0.826836 | 2.179587e-54 | -8.615850e-47 |
| Msa0366870 | Msa0530930 | 0.800234 | 1.585879e-48 | -8.615850e-47 |
| Msa0366870 | Msa0530950 | 0.801880 | 7.306055e-49 | -8.615850e-47 |
| Msa0366870 | Msa0577230 | 0.817408 | 3.350024e-52 | -8.615850e-47 |
| Msa0366870 | Msa0600820 | 0.822663 | 2.099646e-53 | -8.615850e-47 |
| Msa0366870 | Msa0628100 | 0.802626 | 5.130164e-49 | -8.615850e-47 |
| Msa0366870 | Msa0651400 | 0.833038 | 6.708355e-56 | -8.615850e-47 |
| Msa0366870 | Msa0676100 | 0.805436 | 1.336486e-49 | -8.615850e-47 |
| Msa0366870 | Msa0750380 | 0.824080 | 9.796182e-54 | -8.615850e-47 |
| Msa0366870 | Msa0755090 | 0.801402 | 9.158051e-49 | -8.615850e-47 |
| Msa0366870 | Msa0804120 | 0.803367 | 3.606902e-49 | -8.615850e-47 |
| Msa0366870 | Msa0828570 | 0.804249 | 2.365585e-49 | -8.615850e-47 |
| Msa0366870 | Msa0830720 | 0.814788 | 1.289025e-51 | -8.615850e-47 |
| Msa0366870 | Msa0984000 | 0.836232 | 1.055866e-56 | -8.615850e-47 |
| Msa0366870 | Msa1041080 | 0.807902 | 4.028877e-50 | -8.615850e-47 |
| Msa0366870 | Msa1157730 | 0.822961 | 1.789456e-53 | -8.615850e-47 |
| Msa0366870 | Msa1182830 | 0.805307 | 1.422166e-49 | -8.615850e-47 |
| Msa0366870 | Msa1252070 | 0.850003 | 2.248013e-60 | -8.615850e-47 |
| Msa0366870 | Msa1272130 | 0.804888 | 1.740383e-49 | -8.615850e-47 |
| Msa0366870 | Msa1306190 | 0.813996 | 1.928924e-51 | -8.615850e-47 |
| Msa0366870 | Msa1306200 | 0.812352 | 4.426892e-51 | -8.615850e-47 |
| Msa0366870 | Msa1313050 | 0.801443 | 8.982367e-49 | -8.615850e-47 |
| Msa0366870 | Msa1326400 | 0.828665 | 7.925173e-55 | -8.615850e-47 |
| Msa0366870 | Msa1354090 | 0.830877 | 2.293027e-55 | -8.615850e-47 |
| Msa0366870 | Msa1378460 | 0.834814 | 2.411427e-56 | -8.615850e-47 |
| Msa0366870 | Msa1378470 | 0.817826 | 2.695389e-52 | -8.615850e-47 |
| Msa0366870 | Msa1434660 | 0.816948 | 4.249700e-52 | -8.615850e-47 |
| Msa0366870 | Msa1439120 | 0.815176 | 1.057247e-51 | -8.615850e-47 |
| Msa0366870 | Msa1440220 | 0.805581 | 1.245990e-49 | -8.615850e-47 |
| Msa0366870 | Msa1440610 | 0.820698 | 5.979587e-53 | -8.615850e-47 |
| Msa0366870 | Msa1455660 | 0.819207 | 1.311191e-52 | -8.615850e-47 |
| Msa0264050 | Msa0366870 | 0.806315 | 8.730742e-50 | -8.615850e-47 |
| Msa0318270 | Msa0366870 | 0.802017 | 6.847494e-49 | -8.615850e-47 |
| Msa0318310 | Msa0366870 | 0.803191 | 3.921534e-49 | -8.615850e-47 |
| Msa0339310 | Msa0366870 | 0.801866 | 7.356576e-49 | -8.615850e-47 |
| Msa0357380 | Msa0366870 | 0.805129 | 1.549334e-49 | -8.615850e-47 |
| Msa0357390 | Msa0366870 | 0.805758 | 1.143732e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366870 | MtrunA17_Chr3g0107871 | 97.101 | 345 | 7 | 1 | 1 | 345 | 1 | 342 | 0.0 | 687 |
| Msa0366870 | MtrunA17_Chr7g0252361 | 70.968 | 341 | 98 | 1 | 3 | 343 | 24 | 363 | 0.0 | 510 |
| Msa0366870 | MtrunA17_Chr3g0144871 | 53.179 | 346 | 155 | 4 | 2 | 343 | 25 | 367 | 6.31e-129 | 373 |
| Msa0366870 | MtrunA17_Chr7g0252501 | 81.553 | 206 | 36 | 1 | 138 | 343 | 25 | 228 | 8.96e-121 | 347 |
| Msa0366870 | MtrunA17_Chr8g0372671 | 43.966 | 348 | 179 | 6 | 1 | 343 | 24 | 360 | 8.22e-94 | 283 |
| Msa0366870 | MtrunA17_Chr8g0372821 | 40.113 | 354 | 192 | 6 | 1 | 343 | 24 | 368 | 4.57e-91 | 277 |
| Msa0366870 | MtrunA17_Chr5g0404631 | 42.655 | 354 | 184 | 6 | 1 | 343 | 34 | 379 | 4.72e-91 | 277 |
| Msa0366870 | MtrunA17_Chr4g0008111 | 40.058 | 347 | 191 | 6 | 1 | 343 | 24 | 357 | 4.53e-88 | 269 |
| Msa0366870 | MtrunA17_Chr6g0475241 | 39.769 | 347 | 189 | 5 | 1 | 343 | 25 | 355 | 1.84e-87 | 267 |
| Msa0366870 | MtrunA17_Chr3g0107591 | 38.136 | 354 | 199 | 5 | 1 | 343 | 23 | 367 | 1.16e-85 | 263 |
| Msa0366870 | MtrunA17_Chr6g0475221 | 43.131 | 313 | 163 | 4 | 32 | 343 | 54 | 352 | 1.01e-83 | 257 |
| Msa0366870 | MtrunA17_Chr8g0343981 | 37.752 | 347 | 195 | 4 | 2 | 343 | 25 | 355 | 2.22e-79 | 246 |
| Msa0366870 | MtrunA17_Chr5g0419851 | 38.793 | 348 | 197 | 4 | 1 | 343 | 84 | 420 | 1.31e-75 | 239 |
| Msa0366870 | MtrunA17_Chr8g0343971 | 37.752 | 347 | 198 | 5 | 2 | 343 | 25 | 358 | 4.59e-74 | 233 |
| Msa0366870 | MtrunA17_Chr7g0252341 | 68.148 | 135 | 38 | 3 | 7 | 139 | 1 | 132 | 2.51e-58 | 185 |
| Msa0366870 | MtrunA17_Chr5g0444921 | 35.061 | 328 | 191 | 8 | 29 | 342 | 70 | 389 | 1.14e-51 | 176 |
| Msa0366870 | MtrunA17_Chr3g0100101 | 35.671 | 328 | 188 | 9 | 30 | 342 | 61 | 380 | 5.71e-50 | 171 |
| Msa0366870 | MtrunA17_Chr1g0208641 | 33.542 | 319 | 175 | 9 | 32 | 341 | 70 | 360 | 1.43e-49 | 169 |
| Msa0366870 | MtrunA17_Chr1g0155451 | 42.105 | 209 | 113 | 3 | 140 | 343 | 10 | 215 | 2.88e-43 | 149 |
| Msa0366870 | MtrunA17_Chr6g0455071 | 53.846 | 117 | 53 | 1 | 115 | 230 | 11 | 127 | 8.38e-40 | 137 |
| Msa0366870 | MtrunA17_Chr8g0372801 | 43.243 | 148 | 77 | 2 | 67 | 214 | 30 | 170 | 9.32e-35 | 125 |
| Msa0366870 | MtrunA17_Chr6g0455081 | 46.341 | 123 | 61 | 2 | 224 | 343 | 9 | 129 | 9.11e-30 | 110 |
| Msa0366870 | MtrunA17_Chr7g0252351 | 86.207 | 58 | 8 | 0 | 286 | 343 | 1 | 58 | 1.17e-28 | 105 |
| Msa0366870 | MtrunA17_Chr1g0155461 | 41.481 | 135 | 70 | 3 | 1 | 126 | 24 | 158 | 8.32e-27 | 104 |
| Msa0366870 | MtrunA17_Chr1g0155491 | 42.222 | 135 | 69 | 3 | 1 | 126 | 24 | 158 | 5.93e-26 | 102 |
| Msa0366870 | MtrunA17_Chr3g0099281 | 44.643 | 112 | 59 | 1 | 30 | 138 | 69 | 180 | 7.15e-25 | 99.8 |
| Msa0366870 | MtrunA17_Chr1g0155471 | 41.463 | 123 | 60 | 2 | 225 | 343 | 9 | 123 | 8.01e-22 | 89.4 |
| Msa0366870 | MtrunA17_Chr3g0099271 | 30.952 | 210 | 127 | 6 | 143 | 342 | 7 | 208 | 1.10e-18 | 83.6 |
| Msa0366870 | MtrunA17_Chr1g0155481 | 43.878 | 98 | 50 | 2 | 134 | 226 | 4 | 101 | 4.08e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0366870 | AT5G66430.1 | 40.964 | 332 | 177 | 5 | 1 | 325 | 16 | 335 | 4.23e-80 | 248 |
| Msa0366870 | AT3G11480.1 | 41.092 | 348 | 185 | 5 | 1 | 343 | 46 | 378 | 2.68e-78 | 244 |
| Msa0366870 | AT5G38020.1 | 40.533 | 338 | 176 | 7 | 2 | 325 | 22 | 348 | 5.90e-78 | 243 |
| Msa0366870 | AT1G19640.1 | 39.835 | 364 | 198 | 5 | 2 | 344 | 25 | 388 | 1.65e-77 | 243 |
| Msa0366870 | AT5G38020.2 | 41.875 | 320 | 161 | 7 | 20 | 325 | 1 | 309 | 9.24e-76 | 236 |
| Msa0366870 | AT5G04370.1 | 40.805 | 348 | 187 | 7 | 1 | 343 | 56 | 389 | 2.59e-74 | 235 |
| Msa0366870 | AT5G04370.3 | 40.805 | 348 | 187 | 7 | 1 | 343 | 61 | 394 | 3.11e-74 | 235 |
| Msa0366870 | AT5G04370.2 | 40.805 | 348 | 187 | 7 | 1 | 343 | 75 | 408 | 3.64e-74 | 235 |
| Msa0366870 | AT3G21950.1 | 38.806 | 335 | 174 | 8 | 2 | 319 | 22 | 342 | 1.13e-70 | 224 |
| Msa0366870 | AT4G36470.1 | 37.604 | 359 | 196 | 9 | 1 | 345 | 27 | 371 | 7.96e-69 | 220 |
| Msa0366870 | AT5G04380.3 | 38.138 | 333 | 183 | 6 | 1 | 325 | 53 | 370 | 3.51e-67 | 216 |
| Msa0366870 | AT2G14060.1 | 36.637 | 333 | 198 | 4 | 2 | 329 | 30 | 354 | 2.75e-66 | 213 |
| Msa0366870 | AT5G04380.2 | 39.172 | 314 | 168 | 6 | 20 | 325 | 1 | 299 | 4.64e-65 | 209 |
| Msa0366870 | AT3G21950.2 | 35.150 | 367 | 175 | 9 | 2 | 319 | 22 | 374 | 2.69e-64 | 209 |
| Msa0366870 | AT5G04380.1 | 37.237 | 333 | 179 | 7 | 1 | 325 | 49 | 359 | 1.88e-62 | 204 |
| Msa0366870 | AT2G14060.2 | 42.512 | 207 | 111 | 2 | 2 | 208 | 30 | 228 | 4.40e-51 | 171 |
| Msa0366870 | AT1G15125.1 | 33.146 | 356 | 199 | 12 | 2 | 343 | 17 | 347 | 1.06e-50 | 172 |
| Msa0366870 | AT5G38780.2 | 34.084 | 311 | 163 | 10 | 30 | 325 | 8 | 291 | 4.39e-48 | 164 |
| Msa0366870 | AT5G38780.1 | 34.049 | 326 | 172 | 11 | 15 | 325 | 43 | 340 | 7.37e-48 | 165 |
| Msa0366870 | AT5G55250.2 | 32.665 | 349 | 206 | 11 | 12 | 342 | 9 | 346 | 1.48e-47 | 164 |
| Msa0366870 | AT1G68040.1 | 34.783 | 322 | 175 | 10 | 16 | 328 | 49 | 344 | 1.62e-47 | 164 |
| Msa0366870 | AT5G55250.1 | 32.665 | 349 | 206 | 11 | 12 | 342 | 47 | 384 | 1.89e-47 | 165 |
| Msa0366870 | AT5G38100.3 | 32.686 | 309 | 171 | 7 | 28 | 324 | 31 | 314 | 1.34e-46 | 161 |
| Msa0366870 | AT5G38100.1 | 32.362 | 309 | 172 | 7 | 28 | 324 | 54 | 337 | 3.53e-46 | 161 |
| Msa0366870 | AT5G37970.1 | 31.707 | 328 | 185 | 9 | 11 | 325 | 40 | 341 | 8.28e-45 | 157 |
| Msa0366870 | AT5G37990.1 | 31.013 | 316 | 181 | 8 | 20 | 323 | 49 | 339 | 1.76e-44 | 156 |
| Msa0366870 | AT3G44870.1 | 33.333 | 237 | 132 | 6 | 32 | 260 | 53 | 271 | 1.58e-35 | 133 |
| Msa0366870 | AT4G26420.1 | 29.448 | 326 | 196 | 12 | 18 | 320 | 37 | 351 | 1.98e-35 | 133 |
| Msa0366870 | AT3G44860.1 | 33.475 | 236 | 138 | 4 | 32 | 261 | 53 | 275 | 2.35e-35 | 132 |
| Msa0366870 | AT1G66720.1 | 31.579 | 266 | 150 | 7 | 8 | 261 | 35 | 280 | 8.87e-35 | 130 |
| Msa0366870 | AT1G66700.1 | 30.204 | 245 | 145 | 5 | 30 | 263 | 53 | 282 | 8.32e-33 | 125 |
| Msa0366870 | AT5G56300.1 | 28.947 | 304 | 190 | 8 | 31 | 319 | 68 | 360 | 5.13e-32 | 124 |
| Msa0366870 | AT3G44840.1 | 32.353 | 238 | 136 | 7 | 32 | 260 | 53 | 274 | 8.92e-32 | 122 |
| Msa0366870 | AT1G15125.2 | 33.755 | 237 | 132 | 9 | 2 | 227 | 17 | 239 | 1.66e-31 | 119 |
| Msa0366870 | AT1G66690.1 | 26.807 | 332 | 193 | 7 | 2 | 316 | 25 | 323 | 2.59e-30 | 118 |
| Msa0366870 | AT5G38100.2 | 33.163 | 196 | 115 | 4 | 28 | 219 | 54 | 237 | 4.36e-28 | 110 |
| Msa0366870 | AT5G38100.4 | 33.163 | 196 | 115 | 4 | 28 | 219 | 54 | 237 | 4.47e-28 | 110 |
| Msa0366870 | AT4G26420.3 | 30.846 | 201 | 117 | 8 | 18 | 205 | 37 | 228 | 3.28e-22 | 94.7 |
| Msa0366870 | AT1G66700.3 | 32.164 | 171 | 99 | 3 | 30 | 196 | 53 | 210 | 3.77e-22 | 94.4 |
| Msa0366870 | AT4G26420.2 | 30.846 | 201 | 117 | 8 | 18 | 205 | 25 | 216 | 4.56e-22 | 94.4 |
Find 69 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATTATTGGCCAAATCTT+TGG | 0.196851 | 3_1:-61882428 | None:intergenic |
| ATTCATATTATTGATATTCT+TGG | 0.221217 | 3_1:-61883895 | None:intergenic |
| TAGATATTTATGAAGATATT+AGG | 0.232137 | 3_1:-61880315 | None:intergenic |
| TGTCAAAGGGTCTTTGAAAA+TGG | 0.236886 | 3_1:+61883850 | Msa0366870:exon |
| GCTGATTTAGGTTGCTCTTC+GGG | 0.271061 | 3_1:+61880527 | Msa0366870:CDS |
| GCATTATTGGCCAAATCTTT+GGG | 0.295693 | 3_1:-61882427 | None:intergenic |
| TTCGGGGCCAAACACACTTT+TGG | 0.318068 | 3_1:+61880544 | Msa0366870:CDS |
| AATGAAAGTGGCAGCTATAA+TGG | 0.330658 | 3_1:+61880448 | Msa0366870:CDS |
| TACCATCAACAATATCATTA+TGG | 0.336487 | 3_1:-61883647 | None:intergenic |
| GCATTAGGCACCCAAAGATT+TGG | 0.343838 | 3_1:+61882417 | Msa0366870:intron |
| AGCTGATTTAGGTTGCTCTT+CGG | 0.346101 | 3_1:+61880526 | Msa0366870:CDS |
| TTGAGATAAATTTGAAATAC+AGG | 0.352883 | 3_1:-61880626 | None:intergenic |
| TGTATACTCTTGTAGAAATC+AGG | 0.353693 | 3_1:-61880692 | None:intergenic |
| CTCCATAATGATATTGTTGA+TGG | 0.373244 | 3_1:+61883645 | Msa0366870:CDS |
| AAAGGACAAACAACAAACTA+TGG | 0.388932 | 3_1:-61883954 | None:intergenic |
| TATGATGTTCAAGATATTAG+AGG | 0.412683 | 3_1:-61880570 | None:intergenic |
| ACTTCTATTCAAGAGGTACT+TGG | 0.420566 | 3_1:+61882631 | Msa0366870:CDS |
| GAGGTGACCAAAAGTGTGTT+TGG | 0.437326 | 3_1:-61880551 | None:intergenic |
| TGATAGCCAATGTAGACAAT+AGG | 0.444967 | 3_1:-61880819 | None:intergenic |
| TGTTGAATTAAATCCTTCCT+TGG | 0.445130 | 3_1:+61884050 | Msa0366870:three_prime_UTR |
| AAAGAAGTTGATATAATTAG+TGG | 0.455446 | 3_1:-61880789 | None:intergenic |
| TATTGTATTGCTCTTGTCAA+AGG | 0.455467 | 3_1:+61883836 | Msa0366870:CDS |
| CCAAACCCGTCTATTAAAAG+AGG | 0.459322 | 3_1:-61883729 | None:intergenic |
| ATTGTATTGCTCTTGTCAAA+GGG | 0.486886 | 3_1:+61883837 | Msa0366870:CDS |
| ATGATGGTACTAACATTCAT+TGG | 0.488849 | 3_1:+61882586 | Msa0366870:CDS |
| TTTGTAGGGTTTAGTTGAAG+AGG | 0.496525 | 3_1:+61883494 | Msa0366870:intron |
| CTTTGAAAATGGTAAGATGA+AGG | 0.499727 | 3_1:+61883861 | Msa0366870:exon |
| CGGGTTTGGTGAAAATATCA+TGG | 0.505556 | 3_1:+61883743 | Msa0366870:CDS |
| ATTCCTCCTATTGTCTACAT+TGG | 0.506279 | 3_1:+61880813 | Msa0366870:CDS |
| TCATGGATGAATTGTTCTCA+AGG | 0.510601 | 3_1:+61883760 | Msa0366870:CDS |
| TGAAATTACTTCTATTCAAG+AGG | 0.513593 | 3_1:+61882624 | Msa0366870:CDS |
| ACAACCATTAAAAGTTGTGT+TGG | 0.517417 | 3_1:-61880495 | None:intergenic |
| TTGTTGATAGCAAAATGAGA+GGG | 0.521512 | 3_1:+61883670 | Msa0366870:CDS |
| CAAGAGAAAGGAGAAAATGT+TGG | 0.527738 | 3_1:+61880716 | Msa0366870:CDS |
| GAGAAAAGTGATAATGAAAG+TGG | 0.534714 | 3_1:+61880436 | Msa0366870:CDS |
| AAGAGTATACAACAAGAGAA+AGG | 0.535416 | 3_1:+61880704 | Msa0366870:CDS |
| AATAGTATCAGATGGTATGA+TGG | 0.539204 | 3_1:+61882570 | Msa0366870:CDS |
| AAAACAATACAAGAATGAAA+AGG | 0.540005 | 3_1:-61883972 | None:intergenic |
| GGAAGTAAGACAAGTGATTG+AGG | 0.541503 | 3_1:+61883563 | Msa0366870:CDS |
| TGCTTCATAAATGCAACACC+TGG | 0.548138 | 3_1:+61880743 | Msa0366870:CDS |
| TTTGAAATACAGGTGTCTCA+TGG | 0.549266 | 3_1:-61880616 | None:intergenic |
| CTGATTTAGGTTGCTCTTCG+GGG | 0.551359 | 3_1:+61880528 | Msa0366870:CDS |
| AAAGTTGTGTTGGACATCAA+CGG | 0.558540 | 3_1:-61880485 | None:intergenic |
| ATAATAACATCACATACCAC+TGG | 0.559034 | 3_1:-61880387 | None:intergenic |
| TGTCTTACTTCCTCTACAGT+AGG | 0.562905 | 3_1:-61883552 | None:intergenic |
| TAAATATTTCCCTTGTTGAG+TGG | 0.563971 | 3_1:-61882454 | None:intergenic |
| GAATCAAAAGTAGAATAAGA+TGG | 0.564014 | 3_1:+61883914 | Msa0366870:three_prime_UTR |
| TAATGCAAAACCACTCAACA+AGG | 0.577573 | 3_1:+61882444 | Msa0366870:CDS |
| TATTCAAGAGGTACTTGGCA+TGG | 0.581041 | 3_1:+61882636 | Msa0366870:CDS |
| TTCGAAGAAATAGTATCAGA+TGG | 0.593783 | 3_1:+61882562 | Msa0366870:CDS |
| AAGAAGTTGATATAATTAGT+GGG | 0.594084 | 3_1:-61880788 | None:intergenic |
| TAGCCAATGTAGACAATAGG+AGG | 0.595619 | 3_1:-61880816 | None:intergenic |
| TCTACAGTAGGATGGTATGT+TGG | 0.603625 | 3_1:-61883540 | None:intergenic |
| AGACAAGTGATTGAGGCAGA+AGG | 0.607082 | 3_1:+61883570 | Msa0366870:CDS |
| ATCAAGAACAAGTCCTCCAT+CGG | 0.612922 | 3_1:+61882480 | Msa0366870:CDS |
| CTCTGCATAAAGTTTCGATG+AGG | 0.614376 | 3_1:-61880416 | None:intergenic |
| CATCAACAATATCATTATGG+AGG | 0.614744 | 3_1:-61883644 | None:intergenic |
| AACATACCATCCTACTGTAG+AGG | 0.616142 | 3_1:+61883542 | Msa0366870:CDS |
| ATTAACAATGAGATGAGCCA+AGG | 0.618760 | 3_1:-61884067 | None:intergenic |
| TTACTTCCTCTACAGTAGGA+TGG | 0.618977 | 3_1:-61883548 | None:intergenic |
| ATTGTTGATAGCAAAATGAG+AGG | 0.619009 | 3_1:+61883669 | Msa0366870:CDS |
| TAACATCACATACCACTGGA+TGG | 0.621912 | 3_1:-61880383 | None:intergenic |
| ACAATGAGATGAGCCAAGGA+AGG | 0.622394 | 3_1:-61884063 | None:intergenic |
| TATGCTTCATACACCGATGG+AGG | 0.633304 | 3_1:-61882493 | None:intergenic |
| TGGCATGGTACTCAACGAGA+TGG | 0.637697 | 3_1:+61882651 | Msa0366870:CDS |
| AAATATGCTTCATACACCGA+TGG | 0.646291 | 3_1:-61882496 | None:intergenic |
| AATGCAAAACCACTCAACAA+GGG | 0.683152 | 3_1:+61882445 | Msa0366870:CDS |
| TGTTGATAGCAAAATGAGAG+GGG | 0.689070 | 3_1:+61883671 | Msa0366870:CDS |
| ACTCAACGAGATGGTCCAAG+AGG | 0.710119 | 3_1:+61882660 | Msa0366870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTAAAAAAAAAAAAATT+GGG | + | chr3_1:61881254-61881273 | Msa0366870:intron | 0.0% |
| !! | AAAAAAAAAAATTAATAAAA+GGG | - | chr3_1:61881648-61881667 | None:intergenic | 0.0% |
| !! | AAAAAAAAAAAATTAATAAA+AGG | - | chr3_1:61881649-61881668 | None:intergenic | 0.0% |
| !! | TATAAATAATTTATATTATA+CGG | - | chr3_1:61882377-61882396 | None:intergenic | 0.0% |
| !! | ATGGTTTAAAAAAAAAAAAT+TGG | + | chr3_1:61881014-61881033 | Msa0366870:intron | 10.0% |
| !! | TGGTTTAAAAAAAAAAAATT+GGG | + | chr3_1:61881015-61881034 | Msa0366870:intron | 10.0% |
| !! | AAAGACTAAATTTAATAAAA+AGG | + | chr3_1:61881107-61881126 | Msa0366870:intron | 10.0% |
| !! | TAAAACATTCTTATTAATTA+TGG | - | chr3_1:61883286-61883305 | None:intergenic | 10.0% |
| !! | TAGATATTTATGAAGATATT+AGG | - | chr3_1:61880318-61880337 | None:intergenic | 15.0% |
| !!! | CAATATTTTAAATTATAACG+GGG | - | chr3_1:61880966-61880985 | None:intergenic | 15.0% |
| !!! | CCAATATTTTAAATTATAAC+GGG | - | chr3_1:61880967-61880986 | None:intergenic | 15.0% |
| !!! | GCCAATATTTTAAATTATAA+CGG | - | chr3_1:61880968-61880987 | None:intergenic | 15.0% |
| !!! | CATATATAAGTCATTTTTTA+TGG | + | chr3_1:61881226-61881245 | Msa0366870:intron | 15.0% |
| !!! | ATCATTTTATTAAAAAGACA+CGG | - | chr3_1:61881518-61881537 | None:intergenic | 15.0% |
| !! | ATTTAAACCTAAAAACTATA+AGG | - | chr3_1:61881850-61881869 | None:intergenic | 15.0% |
| !!! | TAAGGATTATGATTTTTTTT+TGG | - | chr3_1:61881941-61881960 | None:intergenic | 15.0% |
| !! | TTTCAAAACAAAAATCTTAT+CGG | + | chr3_1:61882739-61882758 | Msa0366870:intron | 15.0% |
| !!! | TTTGAAGAATTTAAAATTCT+AGG | - | chr3_1:61883190-61883209 | None:intergenic | 15.0% |
| !!! | ATTAATAGTGTTGATTTTAA+TGG | - | chr3_1:61883331-61883350 | None:intergenic | 15.0% |
| !! | ATAAGGAATCTTTATAAAAA+AGG | - | chr3_1:61883472-61883491 | None:intergenic | 15.0% |
| !! | ATTCATATTATTGATATTCT+TGG | - | chr3_1:61883898-61883917 | None:intergenic | 15.0% |
| !!! | TTGAGATAAATTTGAAATAC+AGG | - | chr3_1:61880629-61880648 | None:intergenic | 20.0% |
| !!! | AAGAAGTTGATATAATTAGT+GGG | - | chr3_1:61880791-61880810 | None:intergenic | 20.0% |
| !!! | AAAGAAGTTGATATAATTAG+TGG | - | chr3_1:61880792-61880811 | None:intergenic | 20.0% |
| !!! | GATTTTGTTATTCAACAATA+GGG | + | chr3_1:61880882-61880901 | Msa0366870:intron | 20.0% |
| !!! | CCCGTTATAATTTAAAATAT+TGG | + | chr3_1:61880964-61880983 | Msa0366870:intron | 20.0% |
| !! | AAGAATAGGAGTAATATATA+CGG | - | chr3_1:61881773-61881792 | None:intergenic | 20.0% |
| !!! | TAGATTACCTTATAGTTTTT+AGG | + | chr3_1:61881840-61881859 | Msa0366870:intron | 20.0% |
| !!! | TGATTGTTTAACTAGTTTTT+AGG | - | chr3_1:61882157-61882176 | None:intergenic | 20.0% |
| !!! | TCTTTGTTCTTTAATTTGAT+TGG | + | chr3_1:61882200-61882219 | Msa0366870:intron | 20.0% |
| !!! | TATTTGAAGTTCATCTTTTA+TGG | + | chr3_1:61882395-61882414 | Msa0366870:intron | 20.0% |
| !! | AAGGTTTAAACTATTGTAAA+AGG | - | chr3_1:61882819-61882838 | None:intergenic | 20.0% |
| !! | GTTATTCACGTTTAAAAATA+TGG | + | chr3_1:61882879-61882898 | Msa0366870:intron | 20.0% |
| !! | AAAAGAGACAAAAAAAAATC+AGG | - | chr3_1:61882952-61882971 | None:intergenic | 20.0% |
| !! | TTCTTATTAATTATGGTTAG+TGG | - | chr3_1:61883279-61883298 | None:intergenic | 20.0% |
| !! | ATTGAACGACATTATATTAT+AGG | + | chr3_1:61883391-61883410 | Msa0366870:intron | 20.0% |
| !!! | AAAGATTCCTTATAATTTGT+AGG | + | chr3_1:61883479-61883498 | Msa0366870:intron | 20.0% |
| !!! | AAGATTCCTTATAATTTGTA+GGG | + | chr3_1:61883480-61883499 | Msa0366870:intron | 20.0% |
| !!! | AGCAATGAAAACTTTTAAAA+TGG | + | chr3_1:61883608-61883627 | Msa0366870:CDS | 20.0% |
| !!! | GCAATGAAAACTTTTAAAAT+GGG | + | chr3_1:61883609-61883628 | Msa0366870:CDS | 20.0% |
| !! | AAAACAATACAAGAATGAAA+AGG | - | chr3_1:61883975-61883994 | None:intergenic | 20.0% |
| !!! | TGTTTTAAAGTAGCTGATTT+AGG | + | chr3_1:61880515-61880534 | Msa0366870:CDS | 25.0% |
| ! | TATGATGTTCAAGATATTAG+AGG | - | chr3_1:61880573-61880592 | None:intergenic | 25.0% |
| ! | CCATGCTTAAATTTAAATCT+TGG | - | chr3_1:61880863-61880882 | None:intergenic | 25.0% |
| ! | CCAAGATTTAAATTTAAGCA+TGG | + | chr3_1:61880860-61880879 | Msa0366870:intron | 25.0% |
| !!! | GGATTTTGTTATTCAACAAT+AGG | + | chr3_1:61880881-61880900 | Msa0366870:intron | 25.0% |
| ! | AAATTGGGTACAAAAAACAA+AGG | + | chr3_1:61881030-61881049 | Msa0366870:intron | 25.0% |
| ! | AATTGGGTACAAAAAACAAA+GGG | + | chr3_1:61881031-61881050 | Msa0366870:intron | 25.0% |
| ! | AGAATAGGAGTAATATATAC+GGG | - | chr3_1:61881772-61881791 | None:intergenic | 25.0% |
| ! | ATGTAGAGTCAAAAAAGAAT+AGG | - | chr3_1:61881787-61881806 | None:intergenic | 25.0% |
| !! | CACTTTCTTTTTGTCTTTTA+AGG | - | chr3_1:61881894-61881913 | None:intergenic | 25.0% |
| !! | ATTGTTTGTGATTCTAGTTA+AGG | - | chr3_1:61881959-61881978 | None:intergenic | 25.0% |
| ! | ACGGAATATTACTTAAAAAC+TGG | - | chr3_1:61882358-61882377 | None:intergenic | 25.0% |
| ! | TGAAATTACTTCTATTCAAG+AGG | + | chr3_1:61882624-61882643 | Msa0366870:CDS | 25.0% |
| ! | ACTATTGTAAAAGGAAACTA+GGG | - | chr3_1:61882810-61882829 | None:intergenic | 25.0% |
| ! | AACTATTGTAAAAGGAAACT+AGG | - | chr3_1:61882811-61882830 | None:intergenic | 25.0% |
| ! | AACGTGAATAACTAGTTATA+TGG | - | chr3_1:61882871-61882890 | None:intergenic | 25.0% |
| !! | AACAAACTATGAGTTTTACA+CGG | - | chr3_1:61883368-61883387 | None:intergenic | 25.0% |
| ! | ACTAAACCCTACAAATTATA+AGG | - | chr3_1:61883489-61883508 | None:intergenic | 25.0% |
| !!! | TGAAAACTTTTAAAATGGGT+TGG | + | chr3_1:61883613-61883632 | Msa0366870:CDS | 25.0% |
| !!! | GAAAACTTTTAAAATGGGTT+GGG | + | chr3_1:61883614-61883633 | Msa0366870:CDS | 25.0% |
| ! | TACCATCAACAATATCATTA+TGG | - | chr3_1:61883650-61883669 | None:intergenic | 25.0% |
| !! | TTTGAACCTCTTTTAATAGA+CGG | + | chr3_1:61883723-61883742 | Msa0366870:CDS | 25.0% |
| ! | GAATCAAAAGTAGAATAAGA+TGG | + | chr3_1:61883914-61883933 | Msa0366870:three_prime_UTR | 25.0% |
| !!! | TCTTGTATTGTTTTAACACA+TGG | + | chr3_1:61883981-61884000 | Msa0366870:three_prime_UTR | 25.0% |
| ATAATAACATCACATACCAC+TGG | - | chr3_1:61880390-61880409 | None:intergenic | 30.0% | |
| ! | GAGAAAAGTGATAATGAAAG+TGG | + | chr3_1:61880436-61880455 | Msa0366870:CDS | 30.0% |
| ! | ATGTCCAACACAACTTTTAA+TGG | + | chr3_1:61880491-61880510 | Msa0366870:CDS | 30.0% |
| ACAACCATTAAAAGTTGTGT+TGG | - | chr3_1:61880498-61880517 | None:intergenic | 30.0% | |
| TGTATACTCTTGTAGAAATC+AGG | - | chr3_1:61880695-61880714 | None:intergenic | 30.0% | |
| ! | AAGAGTATACAACAAGAGAA+AGG | + | chr3_1:61880704-61880723 | Msa0366870:CDS | 30.0% |
| !! | TCAAGTAATGTTTTAGACCA+GGG | + | chr3_1:61880919-61880938 | Msa0366870:intron | 30.0% |
| GGTCTTTAAATTGTTTAGGA+CGG | - | chr3_1:61880945-61880964 | None:intergenic | 30.0% | |
| ! | TTTAAAATATTGGCCCCAAA+AGG | + | chr3_1:61880974-61880993 | Msa0366870:intron | 30.0% |
| ! | TCTTTTATGTGCTTCCTTTT+GGG | - | chr3_1:61880991-61881010 | None:intergenic | 30.0% |
| ! | ATCTTTTATGTGCTTCCTTT+TGG | - | chr3_1:61880992-61881011 | None:intergenic | 30.0% |
| AAAAACAAAGGGTTTGGATT+CGG | + | chr3_1:61881042-61881061 | Msa0366870:intron | 30.0% | |
| !! | AAATGACAGAAAAAGTGTCA+TGG | - | chr3_1:61881193-61881212 | None:intergenic | 30.0% |
| GGTTAATGAATGTTCTTAGT+TGG | - | chr3_1:61881358-61881377 | None:intergenic | 30.0% | |
| AGAACATTCATTAACCAAGT+AGG | + | chr3_1:61881362-61881381 | Msa0366870:intron | 30.0% | |
| TAATATGATATGAGCCTACT+TGG | - | chr3_1:61881379-61881398 | None:intergenic | 30.0% | |
| AGGCTCATATCATATTATCA+AGG | + | chr3_1:61881382-61881401 | Msa0366870:intron | 30.0% | |
| AAATCTGAATAGATAAGGTG+TGG | - | chr3_1:61881424-61881443 | None:intergenic | 30.0% | |
| ACACCTTATCTATTCAGATT+TGG | + | chr3_1:61881423-61881442 | Msa0366870:intron | 30.0% | |
| ACACCAAATCTGAATAGATA+AGG | - | chr3_1:61881429-61881448 | None:intergenic | 30.0% | |
| ATCGTTCATTTGAGAACAAA+CGG | + | chr3_1:61881479-61881498 | Msa0366870:intron | 30.0% | |
| AATAGGAGTAATATATACGG+GGG | - | chr3_1:61881770-61881789 | None:intergenic | 30.0% | |
| GAATAGGAGTAATATATACG+GGG | - | chr3_1:61881771-61881790 | None:intergenic | 30.0% | |
| ! | AACAATGAGTCGAAATTTTC+AGG | + | chr3_1:61881997-61882016 | Msa0366870:intron | 30.0% |
| AACAAAGATAAAGAGAGTAG+AGG | - | chr3_1:61882188-61882207 | None:intergenic | 30.0% | |
| ACATGTGGAACAAATAAAGA+TGG | - | chr3_1:61882299-61882318 | None:intergenic | 30.0% | |
| ! | AGTTCATCTTTTATGGCATT+AGG | + | chr3_1:61882402-61882421 | Msa0366870:intron | 30.0% |
| TAAATATTTCCCTTGTTGAG+TGG | - | chr3_1:61882457-61882476 | None:intergenic | 30.0% | |
| TTCGAAGAAATAGTATCAGA+TGG | + | chr3_1:61882562-61882581 | Msa0366870:CDS | 30.0% | |
| AATAGTATCAGATGGTATGA+TGG | + | chr3_1:61882570-61882589 | Msa0366870:CDS | 30.0% | |
| ATGATGGTACTAACATTCAT+TGG | + | chr3_1:61882586-61882605 | Msa0366870:CDS | 30.0% | |
| CAAAGCTTATATTTACCTCT+TGG | - | chr3_1:61882678-61882697 | None:intergenic | 30.0% | |
| AATGATAGACATGTGATATG+AGG | - | chr3_1:61882765-61882784 | None:intergenic | 30.0% | |
| AGAAAACATCTATTGTGAGA+CGG | - | chr3_1:61882927-61882946 | None:intergenic | 30.0% | |
| TGAGGAAATGTAATGTTATG+AGG | + | chr3_1:61883138-61883157 | Msa0366870:intron | 30.0% | |
| GAGGAAATGTAATGTTATGA+GGG | + | chr3_1:61883139-61883158 | Msa0366870:intron | 30.0% | |
| ! | GCAATAAATAAGAGTGTGTT+TGG | - | chr3_1:61883231-61883250 | None:intergenic | 30.0% |
| CATCAACAATATCATTATGG+AGG | - | chr3_1:61883647-61883666 | None:intergenic | 30.0% | |
| CTCCATAATGATATTGTTGA+TGG | + | chr3_1:61883645-61883664 | Msa0366870:CDS | 30.0% | |
| !! | ATTGTTGATAGCAAAATGAG+AGG | + | chr3_1:61883669-61883688 | Msa0366870:CDS | 30.0% |
| !! | TTGTTGATAGCAAAATGAGA+GGG | + | chr3_1:61883670-61883689 | Msa0366870:CDS | 30.0% |
| ! | TTGAACCTCTTTTAATAGAC+GGG | + | chr3_1:61883724-61883743 | Msa0366870:CDS | 30.0% |
| TATTGTATTGCTCTTGTCAA+AGG | + | chr3_1:61883836-61883855 | Msa0366870:CDS | 30.0% | |
| ATTGTATTGCTCTTGTCAAA+GGG | + | chr3_1:61883837-61883856 | Msa0366870:CDS | 30.0% | |
| ! | CTTTGAAAATGGTAAGATGA+AGG | + | chr3_1:61883861-61883880 | Msa0366870:exon | 30.0% |
| AAAGGACAAACAACAAACTA+TGG | - | chr3_1:61883957-61883976 | None:intergenic | 30.0% | |
| TGTTGAATTAAATCCTTCCT+TGG | + | chr3_1:61884050-61884069 | Msa0366870:three_prime_UTR | 30.0% | |
| ! | ACATATTTTACACCATCCAG+TGG | + | chr3_1:61880371-61880390 | Msa0366870:five_prime_UTR | 35.0% |
| AATGAAAGTGGCAGCTATAA+TGG | + | chr3_1:61880448-61880467 | Msa0366870:CDS | 35.0% | |
| AAAGTTGTGTTGGACATCAA+CGG | - | chr3_1:61880488-61880507 | None:intergenic | 35.0% | |
| ! | TTTGAAATACAGGTGTCTCA+TGG | - | chr3_1:61880619-61880638 | None:intergenic | 35.0% |
| CAAGAGAAAGGAGAAAATGT+TGG | + | chr3_1:61880716-61880735 | Msa0366870:CDS | 35.0% | |
| ! | GCAACACCTGGAAATTTTTA+TGG | + | chr3_1:61880755-61880774 | Msa0366870:CDS | 35.0% |
| AGTCGTCCATAAAAATTTCC+AGG | - | chr3_1:61880764-61880783 | None:intergenic | 35.0% | |
| ATTCCTCCTATTGTCTACAT+TGG | + | chr3_1:61880813-61880832 | Msa0366870:CDS | 35.0% | |
| TGATAGCCAATGTAGACAAT+AGG | - | chr3_1:61880822-61880841 | None:intergenic | 35.0% | |
| ACATTACTTGACCATCCTAA+GGG | - | chr3_1:61880910-61880929 | None:intergenic | 35.0% | |
| AACATTACTTGACCATCCTA+AGG | - | chr3_1:61880911-61880930 | None:intergenic | 35.0% | |
| !! | GTCAAGTAATGTTTTAGACC+AGG | + | chr3_1:61880918-61880937 | Msa0366870:intron | 35.0% |
| ACGGGGTCTTTAAATTGTTT+AGG | - | chr3_1:61880949-61880968 | None:intergenic | 35.0% | |
| ! | CTTTTATGTGCTTCCTTTTG+GGG | - | chr3_1:61880990-61881009 | None:intergenic | 35.0% |
| ! | GGAAGCACATAAAAGATTGA+TGG | + | chr3_1:61880995-61881014 | Msa0366870:intron | 35.0% |
| GGTACAAAAAACAAAGGGTT+TGG | + | chr3_1:61881036-61881055 | Msa0366870:intron | 35.0% | |
| TTTAATAAAAAGGAGCCTGC+TGG | + | chr3_1:61881117-61881136 | Msa0366870:intron | 35.0% | |
| TTAATAAAAAGGAGCCTGCT+GGG | + | chr3_1:61881118-61881137 | Msa0366870:intron | 35.0% | |
| TTATGATCCTACTTGATCGA+TGG | - | chr3_1:61881608-61881627 | None:intergenic | 35.0% | |
| GACTCATTGTTTGTGATTCT+AGG | - | chr3_1:61881988-61882007 | None:intergenic | 35.0% | |
| ! | TTTCAGGTGAAATTGCAATG+AGG | + | chr3_1:61882013-61882032 | Msa0366870:intron | 35.0% |
| TGCAATGAGGAATCTCAAAT+TGG | + | chr3_1:61882026-61882045 | Msa0366870:intron | 35.0% | |
| GCAATGAGGAATCTCAAATT+GGG | + | chr3_1:61882027-61882046 | Msa0366870:intron | 35.0% | |
| ! | TCAAATTGGGATTCTAGTTG+AGG | + | chr3_1:61882040-61882059 | Msa0366870:intron | 35.0% |
| !! | CGCTTTCTTTTTGTCGTTTA+AGG | + | chr3_1:61882103-61882122 | Msa0366870:intron | 35.0% |
| ! | ATACACTTGCTTGCTAGATT+TGG | + | chr3_1:61882230-61882249 | Msa0366870:intron | 35.0% |
| AAAATCGACAAGACAACATG+TGG | - | chr3_1:61882314-61882333 | None:intergenic | 35.0% | |
| GCATTATTGGCCAAATCTTT+GGG | - | chr3_1:61882430-61882449 | None:intergenic | 35.0% | |
| TGCATTATTGGCCAAATCTT+TGG | - | chr3_1:61882431-61882450 | None:intergenic | 35.0% | |
| !! | GTTGAGTGGTTTTGCATTAT+TGG | - | chr3_1:61882443-61882462 | None:intergenic | 35.0% |
| TAATGCAAAACCACTCAACA+AGG | + | chr3_1:61882444-61882463 | Msa0366870:CDS | 35.0% | |
| AATGCAAAACCACTCAACAA+GGG | + | chr3_1:61882445-61882464 | Msa0366870:CDS | 35.0% | |
| AAATATGCTTCATACACCGA+TGG | - | chr3_1:61882499-61882518 | None:intergenic | 35.0% | |
| !! | ACTTCTATTCAAGAGGTACT+TGG | + | chr3_1:61882631-61882650 | Msa0366870:CDS | 35.0% |
| GAGGGAATTCAAATACTTTG+AGG | + | chr3_1:61883076-61883095 | Msa0366870:intron | 35.0% | |
| TTGAGGTGAATTCCATTGTT+TGG | + | chr3_1:61883093-61883112 | Msa0366870:intron | 35.0% | |
| TGAATTCCATTGTTTGGATG+AGG | + | chr3_1:61883099-61883118 | Msa0366870:intron | 35.0% | |
| GAATTCCATTGTTTGGATGA+GGG | + | chr3_1:61883100-61883119 | Msa0366870:intron | 35.0% | |
| GGGAATGTAATGTAATGTTG+AGG | + | chr3_1:61883120-61883139 | Msa0366870:intron | 35.0% | |
| GAGGGAATTCAAATACTTAG+AGG | + | chr3_1:61883157-61883176 | Msa0366870:intron | 35.0% | |
| ! | AATAAGAGTGTGTTTGGATG+AGG | - | chr3_1:61883225-61883244 | None:intergenic | 35.0% |
| TTTGTAGGGTTTAGTTGAAG+AGG | + | chr3_1:61883494-61883513 | Msa0366870:intron | 35.0% | |
| !! | TGTTGATAGCAAAATGAGAG+GGG | + | chr3_1:61883671-61883690 | Msa0366870:CDS | 35.0% |
| TCATGGATGAATTGTTCTCA+AGG | + | chr3_1:61883760-61883779 | Msa0366870:CDS | 35.0% | |
| ! | TGTCAAAGGGTCTTTGAAAA+TGG | + | chr3_1:61883850-61883869 | Msa0366870:exon | 35.0% |
| TAACATCACATACCACTGGA+TGG | - | chr3_1:61880386-61880405 | None:intergenic | 40.0% | |
| CTCTGCATAAAGTTTCGATG+AGG | - | chr3_1:61880419-61880438 | None:intergenic | 40.0% | |
| !! | AGCTGATTTAGGTTGCTCTT+CGG | + | chr3_1:61880526-61880545 | Msa0366870:CDS | 40.0% |
| TGCTTCATAAATGCAACACC+TGG | + | chr3_1:61880743-61880762 | Msa0366870:CDS | 40.0% | |
| TAGCCAATGTAGACAATAGG+AGG | - | chr3_1:61880819-61880838 | None:intergenic | 40.0% | |
| ! | TTCAACAATAGGGTACCCTT+AGG | + | chr3_1:61880892-61880911 | Msa0366870:intron | 40.0% |
| !! | GAAAAAGTGTCATGGTCTAG+TGG | - | chr3_1:61881185-61881204 | None:intergenic | 40.0% |
| AATTGGGCCCCAAAATAATC+AGG | + | chr3_1:61881270-61881289 | Msa0366870:intron | 40.0% | |
| ATTGGGCCCCAAAATAATCA+GGG | + | chr3_1:61881271-61881290 | Msa0366870:intron | 40.0% | |
| ! | GACCAACTTGGTCTAAAACA+GGG | - | chr3_1:61881336-61881355 | None:intergenic | 40.0% |
| TGTTCTTAGTTGGACCAACT+TGG | - | chr3_1:61881348-61881367 | None:intergenic | 40.0% | |
| TTGATCGATGGTGATAGAAG+GGG | - | chr3_1:61881596-61881615 | None:intergenic | 40.0% | |
| CTTGATCGATGGTGATAGAA+GGG | - | chr3_1:61881597-61881616 | None:intergenic | 40.0% | |
| ACTTGATCGATGGTGATAGA+AGG | - | chr3_1:61881598-61881617 | None:intergenic | 40.0% | |
| TCTATCACCATCGATCAAGT+AGG | + | chr3_1:61881598-61881617 | Msa0366870:intron | 40.0% | |
| ! | TGTTGAGAGTTGACTTCAAC+GGG | - | chr3_1:61881730-61881749 | None:intergenic | 40.0% |
| ! | GTGTTGAGAGTTGACTTCAA+CGG | - | chr3_1:61881731-61881750 | None:intergenic | 40.0% |
| ! | TTGCTTGCTAGATTTGGTCT+TGG | + | chr3_1:61882236-61882255 | Msa0366870:intron | 40.0% |
| ATCAAGAACAAGTCCTCCAT+CGG | + | chr3_1:61882480-61882499 | Msa0366870:CDS | 40.0% | |
| !! | TATTCAAGAGGTACTTGGCA+TGG | + | chr3_1:61882636-61882655 | Msa0366870:CDS | 40.0% |
| AAACATCTATTGTGAGACGG+AGG | - | chr3_1:61882924-61882943 | None:intergenic | 40.0% | |
| ! | ACACTCTAAGGGTATGTAAG+TGG | - | chr3_1:61883017-61883036 | None:intergenic | 40.0% |
| ACATACCCTTAGAGTGTGTT+TGG | + | chr3_1:61883020-61883039 | Msa0366870:intron | 40.0% | |
| TGAGGGAATGTAATGTTACG+AGG | + | chr3_1:61883057-61883076 | Msa0366870:intron | 40.0% | |
| GAGGGAATGTAATGTTACGA+GGG | + | chr3_1:61883058-61883077 | Msa0366870:intron | 40.0% | |
| ACATTCCCTCATCCAAACAA+TGG | - | chr3_1:61883108-61883127 | None:intergenic | 40.0% | |
| TCTACAGTAGGATGGTATGT+TGG | - | chr3_1:61883543-61883562 | None:intergenic | 40.0% | |
| AACATACCATCCTACTGTAG+AGG | + | chr3_1:61883542-61883561 | Msa0366870:CDS | 40.0% | |
| TTACTTCCTCTACAGTAGGA+TGG | - | chr3_1:61883551-61883570 | None:intergenic | 40.0% | |
| TGTCTTACTTCCTCTACAGT+AGG | - | chr3_1:61883555-61883574 | None:intergenic | 40.0% | |
| GGAAGTAAGACAAGTGATTG+AGG | + | chr3_1:61883563-61883582 | Msa0366870:CDS | 40.0% | |
| AAAAACAGCTCTGTGGTACT+TGG | - | chr3_1:61883706-61883725 | None:intergenic | 40.0% | |
| CCAAACCCGTCTATTAAAAG+AGG | - | chr3_1:61883732-61883751 | None:intergenic | 40.0% | |
| !! | CCTCTTTTAATAGACGGGTT+TGG | + | chr3_1:61883729-61883748 | Msa0366870:CDS | 40.0% |
| !! | CGGGTTTGGTGAAAATATCA+TGG | + | chr3_1:61883743-61883762 | Msa0366870:CDS | 40.0% |
| !! | GCTGATTTAGGTTGCTCTTC+GGG | + | chr3_1:61880527-61880546 | Msa0366870:CDS | 45.0% |
| !! | CTGATTTAGGTTGCTCTTCG+GGG | + | chr3_1:61880528-61880547 | Msa0366870:CDS | 45.0% |
| ! | GAGGTGACCAAAAGTGTGTT+TGG | - | chr3_1:61880554-61880573 | None:intergenic | 45.0% |
| ! | ACAATAGGGTACCCTTAGGA+TGG | + | chr3_1:61880896-61880915 | Msa0366870:intron | 45.0% |
| ! | TAAATTGTTTAGGACGGCCC+TGG | - | chr3_1:61880939-61880958 | None:intergenic | 45.0% |
| GGGTTTGGATTCGGCTATAT+AGG | + | chr3_1:61881051-61881070 | Msa0366870:intron | 45.0% | |
| !!! | TTTTTTGGCTTCCCTGACCT+GGG | - | chr3_1:61881151-61881170 | None:intergenic | 45.0% |
| GTCAGGGAAGCCAAAAAACA+AGG | + | chr3_1:61881153-61881172 | Msa0366870:intron | 45.0% | |
| AGGGAAGCCAAAAAACAAGG+AGG | + | chr3_1:61881156-61881175 | Msa0366870:intron | 45.0% | |
| !!! | GTGGCTTCCTCCTTGTTTTT+TGG | - | chr3_1:61881166-61881185 | None:intergenic | 45.0% |
| ! | AACTTGGTCTAAAACAGGGC+CGG | - | chr3_1:61881332-61881351 | None:intergenic | 45.0% |
| ! | GGACCAACTTGGTCTAAAAC+AGG | - | chr3_1:61881337-61881356 | None:intergenic | 45.0% |
| GATAAGGTGTGGATCTAGTG+TGG | - | chr3_1:61881413-61881432 | None:intergenic | 45.0% | |
| GGAAAGCAGATTTCCTGAAC+AGG | - | chr3_1:61881575-61881594 | None:intergenic | 45.0% | |
| GAGATCAACACTGAACACCA+TGG | + | chr3_1:61881695-61881714 | Msa0366870:intron | 45.0% | |
| TCAACACTGAACACCATGGA+TGG | + | chr3_1:61881699-61881718 | Msa0366870:intron | 45.0% | |
| CAACACTGAACACCATGGAT+GGG | + | chr3_1:61881700-61881719 | Msa0366870:intron | 45.0% | |
| ! | TTGAGAGTTGACTTCAACGG+GGG | - | chr3_1:61881728-61881747 | None:intergenic | 45.0% |
| ! | GTTGAGAGTTGACTTCAACG+GGG | - | chr3_1:61881729-61881748 | None:intergenic | 45.0% |
| GAAGTCAACTCTCAACACCA+TGG | + | chr3_1:61881733-61881752 | Msa0366870:intron | 45.0% | |
| AGTAATATATACGGGGGACG+GGG | - | chr3_1:61881764-61881783 | None:intergenic | 45.0% | |
| GAGTAATATATACGGGGGAC+GGG | - | chr3_1:61881765-61881784 | None:intergenic | 45.0% | |
| GGAGTAATATATACGGGGGA+CGG | - | chr3_1:61881766-61881785 | None:intergenic | 45.0% | |
| GCATTAGGCACCCAAAGATT+TGG | + | chr3_1:61882417-61882436 | Msa0366870:intron | 45.0% | |
| TATGCTTCATACACCGATGG+AGG | - | chr3_1:61882496-61882515 | None:intergenic | 45.0% | |
| ACCCTTAGAGTGTGTTTGGA+TGG | + | chr3_1:61883024-61883043 | Msa0366870:intron | 45.0% | |
| CCCATCCAAACACACTCTAA+GGG | - | chr3_1:61883028-61883047 | None:intergenic | 45.0% | |
| CCCTTAGAGTGTGTTTGGAT+GGG | + | chr3_1:61883025-61883044 | Msa0366870:intron | 45.0% | |
| CCTTAGAGTGTGTTTGGATG+GGG | + | chr3_1:61883026-61883045 | Msa0366870:intron | 45.0% | |
| CTTAGAGTGTGTTTGGATGG+GGG | + | chr3_1:61883027-61883046 | Msa0366870:intron | 45.0% | |
| ! | TTGGATGGGGGAATGTTTTG+AGG | + | chr3_1:61883039-61883058 | Msa0366870:intron | 45.0% |
| !! | TGGATGGGGGAATGTTTTGA+GGG | + | chr3_1:61883040-61883059 | Msa0366870:intron | 45.0% |
| AGACAAGTGATTGAGGCAGA+AGG | + | chr3_1:61883570-61883589 | Msa0366870:CDS | 45.0% | |
| GAGGTTCAAAAACAGCTCTG+TGG | - | chr3_1:61883713-61883732 | None:intergenic | 45.0% | |
| ACAATGAGATGAGCCAAGGA+AGG | - | chr3_1:61884066-61884085 | None:intergenic | 45.0% | |
| !! | GTATTTAAAAAAAAAAAAAT+TGG | + | chr3_1:61881253-61881272 | Msa0366870:intron | 5.0% |
| !!! | AATGTTTAATTTTTATTTTT+AGG | - | chr3_1:61882721-61882740 | None:intergenic | 5.0% |
| !! | TATCAATATAAATTTATAAA+AGG | - | chr3_1:61882838-61882857 | None:intergenic | 5.0% |
| ! | TTCGGGGCCAAACACACTTT+TGG | + | chr3_1:61880544-61880563 | Msa0366870:CDS | 50.0% |
| !!! | GTTTTTTGGCTTCCCTGACC+TGG | - | chr3_1:61881152-61881171 | None:intergenic | 50.0% |
| !! | ACCGGGCCCTGATTATTTTG+GGG | - | chr3_1:61881280-61881299 | None:intergenic | 50.0% |
| ! | CACCGGGCCCTGATTATTTT+GGG | - | chr3_1:61881281-61881300 | None:intergenic | 50.0% |
| ! | ACACCGGGCCCTGATTATTT+TGG | - | chr3_1:61881282-61881301 | None:intergenic | 50.0% |
| !! | GGCCCTGTTTTAGACCAAGT+TGG | + | chr3_1:61881331-61881350 | Msa0366870:intron | 50.0% |
| AGACGACTCACATCCTGTTC+AGG | + | chr3_1:61881559-61881578 | Msa0366870:intron | 50.0% | |
| TAATATATACGGGGGACGGG+GGG | - | chr3_1:61881762-61881781 | None:intergenic | 50.0% | |
| GTAATATATACGGGGGACGG+GGG | - | chr3_1:61881763-61881782 | None:intergenic | 50.0% | |
| TGGCATGGTACTCAACGAGA+TGG | + | chr3_1:61882651-61882670 | Msa0366870:CDS | 50.0% | |
| ACTCAACGAGATGGTCCAAG+AGG | + | chr3_1:61882660-61882679 | Msa0366870:CDS | 50.0% | |
| CCCCATCCAAACACACTCTA+AGG | - | chr3_1:61883029-61883048 | None:intergenic | 50.0% | |
| GCCCCAAAATAATCAGGGCC+CGG | + | chr3_1:61881276-61881295 | Msa0366870:intron | 55.0% | |
| TCGAGGTTGGGCTATGACAC+CGG | - | chr3_1:61881298-61881317 | None:intergenic | 55.0% | |
| TGTCATAGCCCAACCTCGAC+AGG | + | chr3_1:61881299-61881318 | Msa0366870:intron | 55.0% | |
| GCTTCCCTGACCTGGGTTCA+CGG | - | chr3_1:61881144-61881163 | None:intergenic | 60.0% | |
| CGAGGTTGGGCTATGACACC+GGG | - | chr3_1:61881297-61881316 | None:intergenic | 60.0% | |
| AGCCCAACCTCGACAGGCTA+TGG | + | chr3_1:61881305-61881324 | Msa0366870:intron | 60.0% | |
| GCCCAACCTCGACAGGCTAT+GGG | + | chr3_1:61881306-61881325 | Msa0366870:intron | 60.0% | |
| GCCCATAGCCTGTCGAGGTT+GGG | - | chr3_1:61881310-61881329 | None:intergenic | 60.0% | |
| AACCTCGACAGGCTATGGGC+CGG | + | chr3_1:61881310-61881329 | Msa0366870:intron | 60.0% | |
| TCAACGGGGGAACCCATCCA+TGG | - | chr3_1:61881715-61881734 | None:intergenic | 60.0% | |
| TGGGCCGTGAACCCAGGTCA+GGG | + | chr3_1:61881137-61881156 | Msa0366870:intron | 65.0% | |
| GGCCCATAGCCTGTCGAGGT+TGG | - | chr3_1:61881311-61881330 | None:intergenic | 65.0% | |
| ACCTGGGTTCACGGCCCAGC+AGG | - | chr3_1:61881135-61881154 | None:intergenic | 70.0% | |
| CTGGGCCGTGAACCCAGGTC+AGG | + | chr3_1:61881136-61881155 | Msa0366870:intron | 70.0% | |
| GCCTGCTGGGCCGTGAACCC+AGG | + | chr3_1:61881131-61881150 | Msa0366870:intron | 75.0% | |
| GGCCGGCCCATAGCCTGTCG+AGG | - | chr3_1:61881315-61881334 | None:intergenic | 75.0% | |
| !!! | CGGGGGACGGGGGGCATCCA+TGG | - | chr3_1:61881753-61881772 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 61880224 | 61884087 | 61880224 | ID=Msa0366870;Name=Msa0366870 |
| chr3_1 | mRNA | 61880224 | 61884087 | 61880224 | ID=Msa0366870-mRNA-1;Parent=Msa0366870;Name=Msa0366870-mRNA-1;_AED=0.08;_eAED=0.08;_QI=207|1|1|1|1|1|3|221|345 |
| chr3_1 | exon | 61880224 | 61880844 | 61880224 | ID=Msa0366870-mRNA-1:exon:12017;Parent=Msa0366870-mRNA-1 |
| chr3_1 | exon | 61882424 | 61882681 | 61882424 | ID=Msa0366870-mRNA-1:exon:12018;Parent=Msa0366870-mRNA-1 |
| chr3_1 | exon | 61883501 | 61884087 | 61883501 | ID=Msa0366870-mRNA-1:exon:12019;Parent=Msa0366870-mRNA-1 |
| chr3_1 | five_prime_UTR | 61880224 | 61880430 | 61880224 | ID=Msa0366870-mRNA-1:five_prime_utr;Parent=Msa0366870-mRNA-1 |
| chr3_1 | CDS | 61880431 | 61880844 | 61880431 | ID=Msa0366870-mRNA-1:cds;Parent=Msa0366870-mRNA-1 |
| chr3_1 | CDS | 61882424 | 61882681 | 61882424 | ID=Msa0366870-mRNA-1:cds;Parent=Msa0366870-mRNA-1 |
| chr3_1 | CDS | 61883501 | 61883866 | 61883501 | ID=Msa0366870-mRNA-1:cds;Parent=Msa0366870-mRNA-1 |
| chr3_1 | three_prime_UTR | 61883867 | 61884087 | 61883867 | ID=Msa0366870-mRNA-1:three_prime_utr;Parent=Msa0366870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
