Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339310 | XP_003597312.1 | 96.795 | 468 | 13 | 2 | 1 | 466 | 13 | 480 | 0.0 | 936 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339310 | sp|Q9SIB2|KCS12_ARATH | 66.300 | 454 | 148 | 3 | 7 | 456 | 19 | 471 | 0.0 | 636 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004350 | Msa0339310 | 0.806676 | 7.325950e-50 | -8.615850e-47 |
| Msa0006700 | Msa0339310 | 0.815525 | 8.842867e-52 | -8.615850e-47 |
| Msa0020630 | Msa0339310 | 0.814043 | 1.883086e-51 | -8.615850e-47 |
| Msa0037820 | Msa0339310 | 0.814084 | 1.844661e-51 | -8.615850e-47 |
| Msa0043940 | Msa0339310 | 0.884844 | 1.355220e-71 | -8.615850e-47 |
| Msa0047470 | Msa0339310 | 0.800865 | 1.179364e-48 | -8.615850e-47 |
| Msa0050720 | Msa0339310 | 0.838771 | 2.358962e-57 | -8.615850e-47 |
| Msa0050770 | Msa0339310 | 0.825562 | 4.381068e-54 | -8.615850e-47 |
| Msa0055280 | Msa0339310 | 0.840907 | 6.552326e-58 | -8.615850e-47 |
| Msa0079250 | Msa0339310 | 0.803202 | 3.900967e-49 | -8.615850e-47 |
| Msa0079770 | Msa0339310 | 0.837768 | 4.277306e-57 | -8.615850e-47 |
| Msa0084680 | Msa0339310 | 0.819601 | 1.065963e-52 | -8.615850e-47 |
| Msa0092710 | Msa0339310 | 0.877431 | 6.319983e-69 | -8.615850e-47 |
| Msa0094100 | Msa0339310 | 0.805807 | 1.116675e-49 | -8.615850e-47 |
| Msa0101060 | Msa0339310 | 0.835294 | 1.824924e-56 | -8.615850e-47 |
| Msa0105340 | Msa0339310 | 0.811040 | 8.541797e-51 | -8.615850e-47 |
| Msa0127440 | Msa0339310 | 0.826653 | 2.410470e-54 | -8.615850e-47 |
| Msa0130800 | Msa0339310 | 0.800588 | 1.343078e-48 | -8.615850e-47 |
| Msa0143080 | Msa0339310 | 0.803791 | 2.944814e-49 | -8.615850e-47 |
| Msa0153430 | Msa0339310 | 0.800501 | 1.399373e-48 | -8.615850e-47 |
| Msa0155110 | Msa0339310 | 0.800962 | 1.126564e-48 | -8.615850e-47 |
| Msa0159750 | Msa0339310 | 0.817440 | 3.294780e-52 | -8.615850e-47 |
| Msa0182640 | Msa0339310 | 0.875945 | 2.064221e-68 | -8.615850e-47 |
| Msa0183610 | Msa0339310 | 0.803010 | 4.273879e-49 | -8.615850e-47 |
| Msa0183620 | Msa0339310 | 0.802020 | 6.839830e-49 | -8.615850e-47 |
| Msa0193760 | Msa0339310 | 0.815557 | 8.696843e-52 | -8.615850e-47 |
| Msa0208630 | Msa0339310 | 0.820881 | 5.424814e-53 | -8.615850e-47 |
| Msa0213080 | Msa0339310 | 0.838809 | 2.306936e-57 | -8.615850e-47 |
| Msa0216210 | Msa0339310 | 0.802750 | 4.838450e-49 | -8.615850e-47 |
| Msa0222660 | Msa0339310 | 0.985784 | 1.173878e-164 | -8.615850e-47 |
| Msa0235550 | Msa0339310 | 0.831076 | 2.048716e-55 | -8.615850e-47 |
| Msa0236980 | Msa0339310 | 0.801176 | 1.018778e-48 | -8.615850e-47 |
| Msa0264050 | Msa0339310 | 0.972898 | 1.596290e-135 | -8.615850e-47 |
| Msa0265820 | Msa0339310 | 0.818892 | 1.545861e-52 | -8.615850e-47 |
| Msa0274520 | Msa0339310 | 0.835939 | 1.253090e-56 | -8.615850e-47 |
| Msa0277530 | Msa0339310 | 0.817406 | 3.353600e-52 | -8.615850e-47 |
| Msa0280490 | Msa0339310 | 0.818318 | 2.086385e-52 | -8.615850e-47 |
| Msa0282170 | Msa0339310 | 0.811328 | 7.396282e-51 | -8.615850e-47 |
| Msa0284870 | Msa0339310 | 0.809943 | 1.473881e-50 | -8.615850e-47 |
| Msa0292180 | Msa0339310 | 0.804404 | 2.196071e-49 | -8.615850e-47 |
| Msa0296610 | Msa0339310 | 0.816778 | 4.640058e-52 | -8.615850e-47 |
| Msa0301980 | Msa0339310 | 0.930296 | 2.013106e-93 | -8.615850e-47 |
| Msa0318270 | Msa0339310 | 0.813028 | 3.148692e-51 | -8.615850e-47 |
| Msa0318310 | Msa0339310 | 0.809157 | 2.173836e-50 | -8.615850e-47 |
| Msa0328210 | Msa0339310 | 0.802097 | 6.595583e-49 | -8.615850e-47 |
| Msa0334980 | Msa0339310 | 0.812544 | 4.019443e-51 | -8.615850e-47 |
| Msa0339310 | Msa0354390 | 0.806816 | 6.843624e-50 | -8.615850e-47 |
| Msa0339310 | Msa0361250 | 0.824757 | 6.789106e-54 | -8.615850e-47 |
| Msa0339310 | Msa0361260 | 0.800444 | 1.437308e-48 | -8.615850e-47 |
| Msa0339310 | Msa0366870 | 0.801866 | 7.356576e-49 | -8.615850e-47 |
| Msa0339310 | Msa0371570 | 0.812583 | 3.941704e-51 | -8.615850e-47 |
| Msa0339310 | Msa0380310 | 0.800356 | 1.497497e-48 | -8.615850e-47 |
| Msa0339310 | Msa0389060 | 0.801302 | 9.602503e-49 | -8.615850e-47 |
| Msa0339310 | Msa0408630 | 0.814050 | 1.876872e-51 | -8.615850e-47 |
| Msa0339310 | Msa0414780 | 0.829203 | 5.871537e-55 | -8.615850e-47 |
| Msa0339310 | Msa0419990 | 0.837179 | 6.053899e-57 | -8.615850e-47 |
| Msa0339310 | Msa0431520 | 0.837735 | 4.361371e-57 | -8.615850e-47 |
| Msa0339310 | Msa0431830 | 0.842033 | 3.310166e-58 | -8.615850e-47 |
| Msa0339310 | Msa0448120 | 0.803726 | 3.038420e-49 | -8.615850e-47 |
| Msa0339310 | Msa0465930 | 0.821722 | 3.471184e-53 | -8.615850e-47 |
| Msa0339310 | Msa0465970 | 0.820911 | 5.341833e-53 | -8.615850e-47 |
| Msa0339310 | Msa0480320 | 0.800374 | 1.485353e-48 | -8.615850e-47 |
| Msa0339310 | Msa0520220 | 0.815766 | 7.812885e-52 | -8.615850e-47 |
| Msa0339310 | Msa0530930 | 0.814480 | 1.508277e-51 | -8.615850e-47 |
| Msa0339310 | Msa0532840 | 0.826886 | 2.120753e-54 | -8.615850e-47 |
| Msa0339310 | Msa0533010 | 0.830687 | 2.552789e-55 | -8.615850e-47 |
| Msa0339310 | Msa0561510 | 0.801099 | 1.056363e-48 | -8.615850e-47 |
| Msa0339310 | Msa0568610 | 0.818540 | 1.858375e-52 | -8.615850e-47 |
| Msa0339310 | Msa0577230 | 0.817599 | 3.033554e-52 | -8.615850e-47 |
| Msa0339310 | Msa0578070 | -0.800228 | 1.590423e-48 | -8.615850e-47 |
| Msa0339310 | Msa0583790 | 0.819521 | 1.112073e-52 | -8.615850e-47 |
| Msa0339310 | Msa0618520 | 0.814585 | 1.429602e-51 | -8.615850e-47 |
| Msa0339310 | Msa0619330 | 0.813640 | 2.310268e-51 | -8.615850e-47 |
| Msa0339310 | Msa0620640 | 0.840907 | 6.552005e-58 | -8.615850e-47 |
| Msa0339310 | Msa0647000 | 0.801372 | 9.287484e-49 | -8.615850e-47 |
| Msa0339310 | Msa0649970 | 0.807497 | 4.911017e-50 | -8.615850e-47 |
| Msa0339310 | Msa0651400 | 0.811684 | 6.188423e-51 | -8.615850e-47 |
| Msa0339310 | Msa0657670 | 0.802435 | 5.618134e-49 | -8.615850e-47 |
| Msa0339310 | Msa0665910 | -0.809110 | 2.224235e-50 | -8.615850e-47 |
| Msa0339310 | Msa0667970 | 0.829045 | 6.410320e-55 | -8.615850e-47 |
| Msa0339310 | Msa0677820 | 0.826349 | 2.848521e-54 | -8.615850e-47 |
| Msa0339310 | Msa0700070 | 0.804792 | 1.822641e-49 | -8.615850e-47 |
| Msa0339310 | Msa0704220 | 0.843143 | 1.679701e-58 | -8.615850e-47 |
| Msa0339310 | Msa0718470 | 0.821827 | 3.283157e-53 | -8.615850e-47 |
| Msa0339310 | Msa0720270 | 0.822893 | 1.855965e-53 | -8.615850e-47 |
| Msa0339310 | Msa0724050 | 0.801627 | 8.234528e-49 | -8.615850e-47 |
| Msa0339310 | Msa0726610 | 0.814867 | 1.237807e-51 | -8.615850e-47 |
| Msa0339310 | Msa0729550 | 0.804743 | 1.865694e-49 | -8.615850e-47 |
| Msa0339310 | Msa0730180 | 0.814241 | 1.703369e-51 | -8.615850e-47 |
| Msa0339310 | Msa0731710 | 0.817215 | 3.702076e-52 | -8.615850e-47 |
| Msa0339310 | Msa0734660 | 0.850179 | 2.007531e-60 | -8.615850e-47 |
| Msa0339310 | Msa0738880 | 0.809611 | 1.736920e-50 | -8.615850e-47 |
| Msa0339310 | Msa0750380 | 0.826163 | 3.153543e-54 | -8.615850e-47 |
| Msa0339310 | Msa0752580 | 0.834449 | 2.977820e-56 | -8.615850e-47 |
| Msa0339310 | Msa0754500 | 0.823900 | 1.079877e-53 | -8.615850e-47 |
| Msa0339310 | Msa0760890 | 0.851387 | 9.172780e-61 | -8.615850e-47 |
| Msa0339310 | Msa0763880 | 0.810427 | 1.159192e-50 | -8.615850e-47 |
| Msa0339310 | Msa0763910 | 0.806145 | 9.480744e-50 | -8.615850e-47 |
| Msa0339310 | Msa0769830 | 0.834300 | 3.246626e-56 | -8.615850e-47 |
| Msa0339310 | Msa0770430 | 0.819650 | 1.039195e-52 | -8.615850e-47 |
| Msa0339310 | Msa0772150 | 0.807418 | 5.103286e-50 | -8.615850e-47 |
| Msa0339310 | Msa0775260 | 0.819550 | 1.095210e-52 | -8.615850e-47 |
| Msa0339310 | Msa0776220 | 0.830496 | 2.842132e-55 | -8.615850e-47 |
| Msa0339310 | Msa0784640 | 0.822007 | 2.981889e-53 | -8.615850e-47 |
| Msa0339310 | Msa0801100 | 0.822846 | 1.903827e-53 | -8.615850e-47 |
| Msa0339310 | Msa0803130 | 0.806095 | 9.712833e-50 | -8.615850e-47 |
| Msa0339310 | Msa0813670 | 0.829897 | 3.980819e-55 | -8.615850e-47 |
| Msa0339310 | Msa0819360 | 0.808726 | 2.688526e-50 | -8.615850e-47 |
| Msa0339310 | Msa0819370 | 0.808078 | 3.695231e-50 | -8.615850e-47 |
| Msa0339310 | Msa0830720 | 0.822621 | 2.147443e-53 | -8.615850e-47 |
| Msa0339310 | Msa0830900 | 0.825061 | 5.756298e-54 | -8.615850e-47 |
| Msa0339310 | Msa0837790 | 0.802114 | 6.542203e-49 | -8.615850e-47 |
| Msa0339310 | Msa0841490 | 0.804757 | 1.853396e-49 | -8.615850e-47 |
| Msa0339310 | Msa0848360 | 0.817540 | 3.127750e-52 | -8.615850e-47 |
| Msa0339310 | Msa0848380 | 0.829239 | 5.753943e-55 | -8.615850e-47 |
| Msa0339310 | Msa0848760 | 0.830681 | 2.561424e-55 | -8.615850e-47 |
| Msa0339310 | Msa0853170 | 0.823628 | 1.250401e-53 | -8.615850e-47 |
| Msa0339310 | Msa0872420 | 0.815827 | 7.570619e-52 | -8.615850e-47 |
| Msa0339310 | Msa0872660 | 0.802793 | 4.739055e-49 | -8.615850e-47 |
| Msa0339310 | Msa0890250 | 0.810051 | 1.396684e-50 | -8.615850e-47 |
| Msa0339310 | Msa0903730 | 0.813839 | 2.089368e-51 | -8.615850e-47 |
| Msa0339310 | Msa0905260 | 0.805060 | 1.601873e-49 | -8.615850e-47 |
| Msa0339310 | Msa0909710 | 0.825478 | 4.587313e-54 | -8.615850e-47 |
| Msa0339310 | Msa0925160 | 0.805993 | 1.020635e-49 | -8.615850e-47 |
| Msa0339310 | Msa0934830 | 0.801775 | 7.681052e-49 | -8.615850e-47 |
| Msa0339310 | Msa0937240 | 0.825130 | 5.543252e-54 | -8.615850e-47 |
| Msa0339310 | Msa0937940 | 0.816800 | 4.587168e-52 | -8.615850e-47 |
| Msa0339310 | Msa0950620 | 0.814562 | 1.446341e-51 | -8.615850e-47 |
| Msa0339310 | Msa0955260 | 0.810478 | 1.129831e-50 | -8.615850e-47 |
| Msa0339310 | Msa0964680 | 0.806152 | 9.451124e-50 | -8.615850e-47 |
| Msa0339310 | Msa0971860 | 0.811274 | 7.599297e-51 | -8.615850e-47 |
| Msa0339310 | Msa0974530 | 0.822384 | 2.438755e-53 | -8.615850e-47 |
| Msa0339310 | Msa0974910 | 0.812852 | 3.440818e-51 | -8.615850e-47 |
| Msa0339310 | Msa0975080 | 0.800109 | 1.681324e-48 | -8.615850e-47 |
| Msa0339310 | Msa0981740 | 0.804069 | 2.578479e-49 | -8.615850e-47 |
| Msa0339310 | Msa1004210 | 0.801266 | 9.766664e-49 | -8.615850e-47 |
| Msa0339310 | Msa1026760 | 0.807905 | 4.022840e-50 | -8.615850e-47 |
| Msa0339310 | Msa1026790 | 0.801589 | 8.384720e-49 | -8.615850e-47 |
| Msa0339310 | Msa1030870 | 0.815777 | 7.769248e-52 | -8.615850e-47 |
| Msa0339310 | Msa1044040 | 0.808694 | 2.731137e-50 | -8.615850e-47 |
| Msa0339310 | Msa1046610 | 0.805656 | 1.201645e-49 | -8.615850e-47 |
| Msa0339310 | Msa1048330 | 0.806171 | 9.361566e-50 | -8.615850e-47 |
| Msa0339310 | Msa1063920 | 0.810433 | 1.155289e-50 | -8.615850e-47 |
| Msa0339310 | Msa1078740 | 0.803764 | 2.982840e-49 | -8.615850e-47 |
| Msa0339310 | Msa1080460 | 0.809208 | 2.119894e-50 | -8.615850e-47 |
| Msa0339310 | Msa1095480 | 0.836875 | 7.241913e-57 | -8.615850e-47 |
| Msa0339310 | Msa1100490 | 0.822322 | 2.520717e-53 | -8.615850e-47 |
| Msa0339310 | Msa1108140 | 0.800902 | 1.159251e-48 | -8.615850e-47 |
| Msa0339310 | Msa1135870 | 0.800502 | 1.398418e-48 | -8.615850e-47 |
| Msa0339310 | Msa1142500 | 0.820085 | 8.261596e-53 | -8.615850e-47 |
| Msa0339310 | Msa1157730 | 0.835260 | 1.860767e-56 | -8.615850e-47 |
| Msa0339310 | Msa1166970 | 0.813774 | 2.159294e-51 | -8.615850e-47 |
| Msa0339310 | Msa1178160 | 0.811278 | 7.582156e-51 | -8.615850e-47 |
| Msa0339310 | Msa1182830 | 0.803688 | 3.094221e-49 | -8.615850e-47 |
| Msa0339310 | Msa1184580 | 0.816490 | 5.384576e-52 | -8.615850e-47 |
| Msa0339310 | Msa1206020 | 0.817498 | 3.196827e-52 | -8.615850e-47 |
| Msa0339310 | Msa1236640 | -0.803103 | 4.089193e-49 | -8.615850e-47 |
| Msa0339310 | Msa1252070 | 0.816247 | 6.102440e-52 | -8.615850e-47 |
| Msa0339310 | Msa1272130 | 0.805103 | 1.569129e-49 | -8.615850e-47 |
| Msa0339310 | Msa1280130 | 0.806169 | 9.373669e-50 | -8.615850e-47 |
| Msa0339310 | Msa1292730 | 0.818798 | 1.624296e-52 | -8.615850e-47 |
| Msa0339310 | Msa1305750 | 0.825779 | 3.892245e-54 | -8.615850e-47 |
| Msa0339310 | Msa1328850 | 0.810808 | 9.588831e-51 | -8.615850e-47 |
| Msa0339310 | Msa1336480 | 0.820113 | 8.141249e-53 | -8.615850e-47 |
| Msa0339310 | Msa1361190 | 0.825608 | 4.273044e-54 | -8.615850e-47 |
| Msa0339310 | Msa1374440 | 0.801967 | 7.013316e-49 | -8.615850e-47 |
| Msa0339310 | Msa1378460 | 0.801878 | 7.313160e-49 | -8.615850e-47 |
| Msa0339310 | Msa1385620 | 0.821402 | 4.115848e-53 | -8.615850e-47 |
| Msa0339310 | Msa1397970 | 0.809282 | 2.043707e-50 | -8.615850e-47 |
| Msa0339310 | Msa1412080 | 0.806154 | 9.440814e-50 | -8.615850e-47 |
| Msa0339310 | Msa1412520 | 0.813153 | 2.956633e-51 | -8.615850e-47 |
| Msa0339310 | Msa1432640 | 0.804281 | 2.328977e-49 | -8.615850e-47 |
| Msa0339310 | Msa1434020 | 0.812783 | 3.563913e-51 | -8.615850e-47 |
| Msa0339310 | Msa1439120 | 0.891960 | 2.464129e-74 | -8.615850e-47 |
| Msa0339310 | Msa1440180 | 0.801952 | 7.061748e-49 | -8.615850e-47 |
| Msa0339310 | Msa1440220 | 0.875989 | 1.993198e-68 | -8.615850e-47 |
| Msa0339310 | Msa1440610 | 0.841639 | 4.205129e-58 | -8.615850e-47 |
| Msa0339310 | Msa1442290 | 0.836008 | 1.203533e-56 | -8.615850e-47 |
| Msa0339310 | Msa1444450 | 0.818083 | 2.358739e-52 | -8.615850e-47 |
| Msa0339310 | Msa1449740 | 0.804342 | 2.262277e-49 | -8.615850e-47 |
| Msa0339310 | Msa1450020 | 0.809115 | 2.219721e-50 | -8.615850e-47 |
| Msa0339310 | Msa1453710 | 0.811356 | 7.293930e-51 | -8.615850e-47 |
| Msa0339310 | Msa1454110 | 0.804781 | 1.832001e-49 | -8.615850e-47 |
| Msa0339310 | Msa1455660 | 0.888823 | 4.192504e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339310 | MtrunA17_Chr2g0327721 | 96.795 | 468 | 13 | 2 | 1 | 466 | 13 | 480 | 0.0 | 936 |
| Msa0339310 | MtrunA17_Chr4g0030601 | 71.335 | 457 | 120 | 3 | 1 | 456 | 13 | 459 | 0.0 | 707 |
| Msa0339310 | MtrunA17_Chr4g0030581 | 72.570 | 463 | 122 | 3 | 1 | 462 | 13 | 471 | 0.0 | 703 |
| Msa0339310 | MtrunA17_Chr4g0030591 | 70.259 | 464 | 132 | 3 | 1 | 462 | 13 | 472 | 0.0 | 686 |
| Msa0339310 | MtrunA17_Chr1g0212951 | 54.566 | 449 | 184 | 5 | 13 | 447 | 26 | 468 | 0.0 | 516 |
| Msa0339310 | MtrunA17_Chr7g0276251 | 44.186 | 430 | 221 | 6 | 14 | 436 | 117 | 534 | 1.53e-123 | 370 |
| Msa0339310 | MtrunA17_Chr1g0188051 | 41.379 | 435 | 233 | 8 | 3 | 432 | 88 | 505 | 2.05e-109 | 333 |
| Msa0339310 | MtrunA17_Chr1g0209881 | 40.553 | 434 | 238 | 7 | 3 | 432 | 72 | 489 | 2.96e-109 | 332 |
| Msa0339310 | MtrunA17_Chr5g0423521 | 41.055 | 436 | 234 | 7 | 4 | 432 | 70 | 489 | 5.47e-109 | 332 |
| Msa0339310 | MtrunA17_Chr4g0035081 | 40.000 | 420 | 232 | 5 | 15 | 430 | 96 | 499 | 5.38e-108 | 329 |
| Msa0339310 | MtrunA17_Chr3g0136561 | 39.813 | 427 | 234 | 5 | 15 | 430 | 486 | 900 | 1.08e-105 | 334 |
| Msa0339310 | MtrunA17_Chr4g0063011 | 38.584 | 438 | 228 | 5 | 15 | 448 | 87 | 487 | 4.78e-105 | 322 |
| Msa0339310 | MtrunA17_Chr1g0166191 | 39.007 | 423 | 237 | 4 | 15 | 432 | 105 | 511 | 1.54e-104 | 321 |
| Msa0339310 | MtrunA17_Chr2g0306781 | 41.689 | 379 | 200 | 4 | 57 | 430 | 34 | 396 | 7.18e-99 | 302 |
| Msa0339310 | MtrunA17_Chr2g0277841 | 39.808 | 417 | 237 | 4 | 15 | 430 | 45 | 448 | 3.91e-96 | 297 |
| Msa0339310 | MtrunA17_Chr6g0480561 | 38.955 | 421 | 227 | 10 | 20 | 430 | 65 | 465 | 2.48e-94 | 293 |
| Msa0339310 | MtrunA17_Chr2g0295781 | 36.967 | 422 | 251 | 5 | 11 | 430 | 40 | 448 | 1.47e-91 | 285 |
| Msa0339310 | MtrunA17_Chr7g0276241 | 44.333 | 300 | 148 | 4 | 136 | 432 | 2 | 285 | 8.07e-89 | 273 |
| Msa0339310 | MtrunA17_Chr2g0282281 | 35.784 | 408 | 243 | 4 | 17 | 422 | 110 | 500 | 5.11e-88 | 278 |
| Msa0339310 | MtrunA17_Chr1g0204301 | 37.647 | 425 | 237 | 8 | 15 | 430 | 78 | 483 | 1.47e-85 | 271 |
| Msa0339310 | MtrunA17_Chr7g0250661 | 42.667 | 300 | 152 | 3 | 136 | 430 | 2 | 286 | 7.11e-83 | 257 |
| Msa0339310 | MtrunA17_Chr3g0115021 | 37.055 | 421 | 234 | 8 | 20 | 430 | 83 | 482 | 4.42e-82 | 261 |
| Msa0339310 | MtrunA17_Chr3g0115041 | 37.055 | 421 | 234 | 8 | 20 | 430 | 83 | 482 | 5.02e-82 | 261 |
| Msa0339310 | MtrunA17_Chr6g0469631 | 37.589 | 423 | 229 | 8 | 20 | 430 | 82 | 481 | 5.96e-78 | 251 |
| Msa0339310 | MtrunA17_Chr6g0461631 | 39.474 | 266 | 141 | 3 | 170 | 430 | 3 | 253 | 2.14e-61 | 201 |
| Msa0339310 | MtrunA17_Chr4g0026871 | 41.841 | 239 | 118 | 4 | 198 | 430 | 1 | 224 | 6.74e-57 | 188 |
| Msa0339310 | MtrunA17_Chr4g0026791 | 43.523 | 193 | 91 | 3 | 198 | 386 | 1 | 179 | 5.58e-44 | 152 |
| Msa0339310 | MtrunA17_Chr4g0026721 | 37.870 | 169 | 85 | 3 | 267 | 430 | 3 | 156 | 2.35e-32 | 120 |
| Msa0339310 | MtrunA17_Chr4g0026861 | 31.056 | 161 | 110 | 1 | 11 | 171 | 54 | 213 | 3.72e-22 | 94.4 |
| Msa0339310 | MtrunA17_Chr6g0461621 | 32.222 | 180 | 114 | 5 | 6 | 182 | 55 | 229 | 9.05e-21 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339310 | AT2G28630.2 | 66.300 | 454 | 148 | 3 | 7 | 456 | 19 | 471 | 0.0 | 636 |
| Msa0339310 | AT2G28630.1 | 66.300 | 454 | 148 | 3 | 7 | 456 | 19 | 471 | 0.0 | 636 |
| Msa0339310 | AT1G07720.2 | 65.310 | 467 | 143 | 4 | 2 | 456 | 57 | 516 | 0.0 | 631 |
| Msa0339310 | AT1G07720.1 | 65.310 | 467 | 143 | 4 | 2 | 456 | 14 | 473 | 0.0 | 630 |
| Msa0339310 | AT5G04530.1 | 53.244 | 447 | 196 | 5 | 5 | 447 | 18 | 455 | 2.37e-179 | 510 |
| Msa0339310 | AT1G01120.1 | 43.192 | 426 | 212 | 6 | 15 | 430 | 118 | 523 | 4.72e-123 | 369 |
| Msa0339310 | AT2G46720.1 | 38.940 | 434 | 248 | 6 | 3 | 432 | 44 | 464 | 1.02e-111 | 338 |
| Msa0339310 | AT4G34510.1 | 41.080 | 426 | 228 | 5 | 11 | 430 | 74 | 482 | 2.03e-110 | 335 |
| Msa0339310 | AT1G25450.1 | 41.435 | 432 | 233 | 7 | 3 | 430 | 68 | 483 | 3.36e-109 | 332 |
| Msa0339310 | AT4G34520.1 | 39.723 | 433 | 226 | 6 | 15 | 430 | 73 | 487 | 3.70e-108 | 330 |
| Msa0339310 | AT2G15090.1 | 38.182 | 440 | 248 | 7 | 1 | 430 | 51 | 476 | 3.38e-107 | 327 |
| Msa0339310 | AT2G16280.1 | 40.000 | 425 | 225 | 6 | 15 | 430 | 104 | 507 | 6.75e-107 | 327 |
| Msa0339310 | AT1G19440.1 | 38.353 | 425 | 232 | 6 | 15 | 430 | 108 | 511 | 3.58e-106 | 325 |
| Msa0339310 | AT5G43760.1 | 40.749 | 427 | 226 | 7 | 15 | 430 | 107 | 517 | 2.51e-105 | 323 |
| Msa0339310 | AT4G34250.1 | 38.426 | 432 | 228 | 6 | 15 | 430 | 75 | 484 | 3.27e-105 | 322 |
| Msa0339310 | AT2G26640.1 | 40.411 | 438 | 233 | 8 | 1 | 430 | 83 | 500 | 4.17e-105 | 322 |
| Msa0339310 | AT3G10280.1 | 37.182 | 433 | 250 | 5 | 3 | 432 | 44 | 457 | 5.37e-105 | 320 |
| Msa0339310 | AT1G68530.1 | 40.573 | 419 | 231 | 7 | 15 | 430 | 85 | 488 | 1.14e-104 | 321 |
| Msa0339310 | AT1G04220.1 | 38.864 | 440 | 240 | 8 | 3 | 430 | 90 | 512 | 2.62e-103 | 318 |
| Msa0339310 | AT2G26250.1 | 35.780 | 436 | 255 | 5 | 15 | 430 | 117 | 547 | 2.33e-98 | 306 |
| Msa0339310 | AT5G49070.1 | 37.176 | 425 | 255 | 4 | 6 | 430 | 40 | 452 | 6.32e-95 | 295 |
| Msa0339310 | AT1G71160.1 | 36.740 | 411 | 247 | 3 | 20 | 430 | 48 | 445 | 6.34e-92 | 286 |
| Msa0339310 | AT3G52160.1 | 31.796 | 412 | 236 | 4 | 4 | 414 | 73 | 440 | 3.25e-75 | 243 |
| Msa0339310 | AT3G52160.2 | 34.270 | 356 | 189 | 4 | 60 | 414 | 16 | 327 | 2.83e-71 | 229 |
| Msa0339310 | AT1G68530.2 | 38.007 | 271 | 161 | 3 | 15 | 282 | 85 | 351 | 5.95e-58 | 196 |
| Msa0339310 | AT5G49070.2 | 31.183 | 279 | 189 | 2 | 3 | 281 | 37 | 312 | 1.90e-40 | 147 |
Find 75 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAATGCAACAGTTGTTAT+TGG | 0.230294 | 2_4:-60392027 | Msa0339310:CDS |
| CTTAGTACAAATTGGTATTC+AGG | 0.248106 | 2_4:-60392673 | Msa0339310:CDS |
| AAAGCTCTTGTAGCTGCTTT+TGG | 0.259427 | 2_4:+60392436 | None:intergenic |
| TACCAGCTAGGGAAATATTT+AGG | 0.265669 | 2_4:-60392378 | Msa0339310:CDS |
| ATGACATTCTTGCTGGTTCT+AGG | 0.278483 | 2_4:+60392167 | None:intergenic |
| CGGCCTTCGATGAAGTTTCT+TGG | 0.294675 | 2_4:+60393009 | None:intergenic |
| GTGGTATGTGTTGGGGTATA+TGG | 0.299234 | 2_4:-60392110 | Msa0339310:CDS |
| GAACAATGTGGCAAGATTAT+AGG | 0.312551 | 2_4:-60393117 | Msa0339310:CDS |
| TTACTATCCACCACACTCTT+TGG | 0.331528 | 2_4:-60391948 | Msa0339310:CDS |
| CCATCGTTGGGTTCACAGTT+CGG | 0.347303 | 2_4:+60392989 | None:intergenic |
| TCCACTTCGTCTTCCATCGT+TGG | 0.351430 | 2_4:+60392976 | None:intergenic |
| CAGAGTCTCTTAGTACAAAT+TGG | 0.351617 | 2_4:-60392681 | Msa0339310:CDS |
| ATAAAAGCTTATAACCTATC+TGG | 0.357029 | 2_4:-60392793 | Msa0339310:CDS |
| AGAATGTCATTACATAGATT+TGG | 0.358478 | 2_4:-60392154 | Msa0339310:CDS |
| TGCACTTGTGTTTCCTGATC+TGG | 0.359947 | 2_4:-60393227 | Msa0339310:CDS |
| TAAATGCAACAGTTGTTATT+GGG | 0.360260 | 2_4:-60392026 | Msa0339310:CDS |
| AGTTTGAGTTTGAAAGTGTT+TGG | 0.363208 | 2_4:+60391878 | None:intergenic |
| CTCTTTGGCCAACCCATTCA+TGG | 0.371696 | 2_4:-60391933 | Msa0339310:CDS |
| CTATGTAATGACATTCTTGC+TGG | 0.374650 | 2_4:+60392160 | None:intergenic |
| AAAGCAGTGATAGATGGAAT+TGG | 0.380405 | 2_4:-60392217 | Msa0339310:CDS |
| CCACTTCGTCTTCCATCGTT+GGG | 0.388821 | 2_4:+60392977 | None:intergenic |
| CAACCGTACTTCTCCATGAA+TGG | 0.407631 | 2_4:+60391920 | None:intergenic |
| GGAAGACGAAGTGGAGGAAA+TGG | 0.412780 | 2_4:-60392968 | Msa0339310:CDS |
| CCAAGTGATGAAAGAAAACT+TGG | 0.421127 | 2_4:-60393144 | Msa0339310:CDS |
| AGCTTATAACCTATCTGGTA+TGG | 0.425685 | 2_4:-60392788 | Msa0339310:CDS |
| GCAAAGCTTCTAAACAAATC+AGG | 0.429501 | 2_4:-60392922 | Msa0339310:CDS |
| ATAGGAAACAATGAGAATAT+TGG | 0.429933 | 2_4:-60393099 | Msa0339310:CDS |
| CTGAGTTGACAACGGCTTTG+AGG | 0.431728 | 2_4:+60393055 | None:intergenic |
| ATTGGTATTCAGGAAACAAT+AGG | 0.432471 | 2_4:-60392663 | Msa0339310:CDS |
| AAGCAGTGATAGATGGAATT+GGG | 0.433566 | 2_4:-60392216 | Msa0339310:CDS |
| AAGTCAGCTGCAAGATGGTT+TGG | 0.438277 | 2_4:-60392307 | Msa0339310:CDS |
| GGAGGAAAAGCAGTGATAGA+TGG | 0.443045 | 2_4:-60392223 | Msa0339310:CDS |
| AGAGTATTGATGATAAGTTT+AGG | 0.443493 | 2_4:-60392058 | Msa0339310:CDS |
| ATGATTCTTGAAGTTAAAGA+AGG | 0.444901 | 2_4:+60392841 | None:intergenic |
| TACCTAAATATTTCCCTAGC+TGG | 0.449686 | 2_4:+60392376 | None:intergenic |
| AGTAGTTTGTGGTATGTGTT+GGG | 0.450299 | 2_4:-60392118 | Msa0339310:CDS |
| CAAATCAGGCATTTCACCTT+CGG | 0.453132 | 2_4:-60392908 | Msa0339310:CDS |
| AGAGATGTTGTTGGTGATGA+TGG | 0.459031 | 2_4:-60391995 | Msa0339310:CDS |
| TCACCAGTGAATTTCAAAAC+AGG | 0.477090 | 2_4:-60392271 | Msa0339310:CDS |
| CTCAAAGCCGTTGTCAACTC+AGG | 0.488420 | 2_4:-60393054 | Msa0339310:CDS |
| AACCGTACTTCTCCATGAAT+GGG | 0.497250 | 2_4:+60391921 | None:intergenic |
| GAAGATGAACAAGGTAAACT+TGG | 0.499726 | 2_4:-60392481 | Msa0339310:CDS |
| AACCATCTTGCAGCTGACTT+AGG | 0.502261 | 2_4:+60392310 | None:intergenic |
| AGTTTAATATGTAACACTCT+TGG | 0.508115 | 2_4:+60393181 | None:intergenic |
| CTCCTAAGTCAGCTGCAAGA+TGG | 0.509644 | 2_4:-60392312 | Msa0339310:CDS |
| TTGATGATAAGTTTAGGTGC+TGG | 0.511949 | 2_4:-60392052 | Msa0339310:CDS |
| AAGTAGTTTGTGGTATGTGT+TGG | 0.515984 | 2_4:-60392119 | Msa0339310:CDS |
| GCCGTTGTCAACTCAGGCAT+TGG | 0.520687 | 2_4:-60393048 | Msa0339310:CDS |
| GAAGTAATGAGAGATGTTGT+TGG | 0.523138 | 2_4:-60392004 | Msa0339310:CDS |
| CACTACAACCCATACCAGAT+AGG | 0.541455 | 2_4:+60392779 | None:intergenic |
| GCTTATAACCTATCTGGTAT+GGG | 0.546638 | 2_4:-60392787 | Msa0339310:CDS |
| ATACATCAGCAAGTAGTTTG+TGG | 0.556511 | 2_4:-60392129 | Msa0339310:CDS |
| GAATTGCACAACCGCCGGTA+CGG | 0.562704 | 2_4:+60392614 | None:intergenic |
| TTCGGAGATCGATATTCTTG+TGG | 0.562977 | 2_4:-60392890 | Msa0339310:CDS |
| CATTCATGGAGAAGTACGGT+TGG | 0.603031 | 2_4:-60391919 | Msa0339310:CDS |
| TGTCTAGTTAGAACTCATCA+TGG | 0.608151 | 2_4:-60392541 | Msa0339310:CDS |
| AACCCATTCATGGAGAAGTA+CGG | 0.611169 | 2_4:-60391923 | Msa0339310:CDS |
| GTACTTCTCCATGAATGGGT+TGG | 0.611489 | 2_4:+60391925 | None:intergenic |
| AACGATGGAAGACGAAGTGG+AGG | 0.619961 | 2_4:-60392974 | Msa0339310:CDS |
| GGTATATGGAAGCTAAGAAG+AGG | 0.621077 | 2_4:-60392096 | Msa0339310:CDS |
| TACGGAAAAGACAATTTGCA+AGG | 0.623230 | 2_4:+60392632 | None:intergenic |
| CCCAACGATGGAAGACGAAG+TGG | 0.624451 | 2_4:-60392977 | Msa0339310:CDS |
| TGGTGATGATGGAAATGTGT+GGG | 0.626310 | 2_4:-60391984 | Msa0339310:CDS |
| GCTCCAAGAAACTTCATCGA+AGG | 0.628524 | 2_4:-60393012 | Msa0339310:CDS |
| GAGAAGAATTGCACAACCGC+CGG | 0.629617 | 2_4:+60392609 | None:intergenic |
| GTAGTTTGTGGTATGTGTTG+GGG | 0.633510 | 2_4:-60392117 | Msa0339310:CDS |
| TAACCATTACAAAATGAGAG+AGG | 0.653134 | 2_4:-60392818 | Msa0339310:CDS |
| TGTCAACTCAGGCATTGGTG+AGG | 0.663337 | 2_4:-60393043 | Msa0339310:CDS |
| CCGAACTGTGAACCCAACGA+TGG | 0.667415 | 2_4:-60392989 | Msa0339310:CDS |
| ACAAGAATATCGATCTCCGA+AGG | 0.671733 | 2_4:+60392892 | None:intergenic |
| ACCAATGCCTGAGTTGACAA+CGG | 0.693257 | 2_4:+60393047 | None:intergenic |
| AATGGGTTGGCCAAAGAGTG+TGG | 0.696430 | 2_4:+60391938 | None:intergenic |
| TTGGTGATGATGGAAATGTG+TGG | 0.702877 | 2_4:-60391985 | Msa0339310:CDS |
| GGGTTGGCCAAAGAGTGTGG+TGG | 0.735704 | 2_4:+60391941 | None:intergenic |
| AAACTTGGAAGTGAACAATG+TGG | 0.743662 | 2_4:-60393129 | Msa0339310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGCTTTTACTGATAATTTAA+GGG | - | chr2_4:60392659-60392678 | Msa0339310:CDS | 20.0% |
| !!! | AGCTTTTACTGATAATTTAA+GGG | - | chr2_4:60392659-60392678 | Msa0339310:CDS | 20.0% |
| ! | GAAAAAATTTGATCAGAGAA+GGG | - | chr2_4:60391873-60391892 | Msa0339310:CDS | 25.0% |
| ! | AGTTTAATATGTAACACTCT+TGG | + | chr2_4:60391900-60391919 | None:intergenic | 25.0% |
| ! | ATAGGAAACAATGAGAATAT+TGG | - | chr2_4:60391979-60391998 | Msa0339310:CDS | 25.0% |
| ! | ATGATTCTTGAAGTTAAAGA+AGG | + | chr2_4:60392240-60392259 | None:intergenic | 25.0% |
| ! | ATAAAAGCTTATAACCTATC+TGG | - | chr2_4:60392285-60392304 | Msa0339310:CDS | 25.0% |
| !! | GAGCTTTTACTGATAATTTA+AGG | - | chr2_4:60392658-60392677 | Msa0339310:CDS | 25.0% |
| ! | AGAATGTCATTACATAGATT+TGG | - | chr2_4:60392924-60392943 | Msa0339310:CDS | 25.0% |
| !!! | AGAGTATTGATGATAAGTTT+AGG | - | chr2_4:60393020-60393039 | Msa0339310:CDS | 25.0% |
| ! | TTAAATGCAACAGTTGTTAT+TGG | - | chr2_4:60393051-60393070 | Msa0339310:CDS | 25.0% |
| !! | TAAATGCAACAGTTGTTATT+GGG | - | chr2_4:60393052-60393071 | Msa0339310:CDS | 25.0% |
| ! | GAAAAAATTTGATCAGAGAA+GGG | - | chr2_4:60391873-60391892 | Msa0339310:CDS | 25.0% |
| ! | AGTTTAATATGTAACACTCT+TGG | + | chr2_4:60391900-60391919 | None:intergenic | 25.0% |
| ! | ATAGGAAACAATGAGAATAT+TGG | - | chr2_4:60391979-60391998 | Msa0339310:CDS | 25.0% |
| ! | ATGATTCTTGAAGTTAAAGA+AGG | + | chr2_4:60392240-60392259 | None:intergenic | 25.0% |
| ! | ATAAAAGCTTATAACCTATC+TGG | - | chr2_4:60392285-60392304 | Msa0339310:CDS | 25.0% |
| !! | GAGCTTTTACTGATAATTTA+AGG | - | chr2_4:60392658-60392677 | Msa0339310:CDS | 25.0% |
| ! | AGAATGTCATTACATAGATT+TGG | - | chr2_4:60392924-60392943 | Msa0339310:CDS | 25.0% |
| !!! | AGAGTATTGATGATAAGTTT+AGG | - | chr2_4:60393020-60393039 | Msa0339310:CDS | 25.0% |
| ! | TTAAATGCAACAGTTGTTAT+TGG | - | chr2_4:60393051-60393070 | Msa0339310:CDS | 25.0% |
| !! | TAAATGCAACAGTTGTTATT+GGG | - | chr2_4:60393052-60393071 | Msa0339310:CDS | 25.0% |
| !!! | GATCAAATTTTTTCCAGATC+AGG | + | chr2_4:60391867-60391886 | None:intergenic | 30.0% |
| GGAAAAAATTTGATCAGAGA+AGG | - | chr2_4:60391872-60391891 | Msa0339310:CDS | 30.0% | |
| TAACCATTACAAAATGAGAG+AGG | - | chr2_4:60392260-60392279 | Msa0339310:CDS | 30.0% | |
| ! | TATCCTCTCTCATTTTGTAA+TGG | + | chr2_4:60392266-60392285 | None:intergenic | 30.0% |
| CTTAGTACAAATTGGTATTC+AGG | - | chr2_4:60392405-60392424 | Msa0339310:CDS | 30.0% | |
| ATTGGTATTCAGGAAACAAT+AGG | - | chr2_4:60392415-60392434 | Msa0339310:CDS | 30.0% | |
| !!! | CAGTATAGCTTTGTGTTTTA+AGG | + | chr2_4:60392508-60392527 | None:intergenic | 30.0% |
| AGTCAAAAAGAAGATGAACA+AGG | - | chr2_4:60392588-60392607 | Msa0339310:CDS | 30.0% | |
| ! | ACCTAAAATTTTACCAGCTA+GGG | - | chr2_4:60392689-60392708 | Msa0339310:CDS | 30.0% |
| !! | AGTTTGAGTTTGAAAGTGTT+TGG | + | chr2_4:60393203-60393222 | None:intergenic | 30.0% |
| !!! | GATCAAATTTTTTCCAGATC+AGG | + | chr2_4:60391867-60391886 | None:intergenic | 30.0% |
| GGAAAAAATTTGATCAGAGA+AGG | - | chr2_4:60391872-60391891 | Msa0339310:CDS | 30.0% | |
| TAACCATTACAAAATGAGAG+AGG | - | chr2_4:60392260-60392279 | Msa0339310:CDS | 30.0% | |
| ! | TATCCTCTCTCATTTTGTAA+TGG | + | chr2_4:60392266-60392285 | None:intergenic | 30.0% |
| CTTAGTACAAATTGGTATTC+AGG | - | chr2_4:60392405-60392424 | Msa0339310:CDS | 30.0% | |
| ATTGGTATTCAGGAAACAAT+AGG | - | chr2_4:60392415-60392434 | Msa0339310:CDS | 30.0% | |
| !!! | CAGTATAGCTTTGTGTTTTA+AGG | + | chr2_4:60392508-60392527 | None:intergenic | 30.0% |
| AGTCAAAAAGAAGATGAACA+AGG | - | chr2_4:60392588-60392607 | Msa0339310:CDS | 30.0% | |
| ! | ACCTAAAATTTTACCAGCTA+GGG | - | chr2_4:60392689-60392708 | Msa0339310:CDS | 30.0% |
| !! | AGTTTGAGTTTGAAAGTGTT+TGG | + | chr2_4:60393203-60393222 | None:intergenic | 30.0% |
| ! | CCAAGTTTTCTTTCATCACT+TGG | + | chr2_4:60391937-60391956 | None:intergenic | 35.0% |
| CCAAGTGATGAAAGAAAACT+TGG | - | chr2_4:60391934-60391953 | Msa0339310:CDS | 35.0% | |
| AAACTTGGAAGTGAACAATG+TGG | - | chr2_4:60391949-60391968 | Msa0339310:CDS | 35.0% | |
| GAACAATGTGGCAAGATTAT+AGG | - | chr2_4:60391961-60391980 | Msa0339310:CDS | 35.0% | |
| GCAAAGCTTCTAAACAAATC+AGG | - | chr2_4:60392156-60392175 | Msa0339310:CDS | 35.0% | |
| AGCTTATAACCTATCTGGTA+TGG | - | chr2_4:60392290-60392309 | Msa0339310:CDS | 35.0% | |
| GCTTATAACCTATCTGGTAT+GGG | - | chr2_4:60392291-60392310 | Msa0339310:CDS | 35.0% | |
| CAGAGTCTCTTAGTACAAAT+TGG | - | chr2_4:60392397-60392416 | Msa0339310:CDS | 35.0% | |
| TACGGAAAAGACAATTTGCA+AGG | + | chr2_4:60392449-60392468 | None:intergenic | 35.0% | |
| TGTCTAGTTAGAACTCATCA+TGG | - | chr2_4:60392537-60392556 | Msa0339310:CDS | 35.0% | |
| GAAGATGAACAAGGTAAACT+TGG | - | chr2_4:60392597-60392616 | Msa0339310:CDS | 35.0% | |
| !! | CTTTTGGAAGATCTTTAGCT+AGG | + | chr2_4:60392629-60392648 | None:intergenic | 35.0% |
| ! | CACCTAAAATTTTACCAGCT+AGG | - | chr2_4:60392688-60392707 | Msa0339310:CDS | 35.0% |
| ! | TCCCTAGCTGGTAAAATTTT+AGG | + | chr2_4:60392693-60392712 | None:intergenic | 35.0% |
| TACCAGCTAGGGAAATATTT+AGG | - | chr2_4:60392700-60392719 | Msa0339310:CDS | 35.0% | |
| TACCTAAATATTTCCCTAGC+TGG | + | chr2_4:60392705-60392724 | None:intergenic | 35.0% | |
| TCACCAGTGAATTTCAAAAC+AGG | - | chr2_4:60392807-60392826 | Msa0339310:CDS | 35.0% | |
| !!! | ACACCTGTTTTGAAATTCAC+TGG | + | chr2_4:60392813-60392832 | None:intergenic | 35.0% |
| ! | GATCATTTTGTTCTTCACAC+TGG | - | chr2_4:60392834-60392853 | Msa0339310:CDS | 35.0% |
| AAAGCAGTGATAGATGGAAT+TGG | - | chr2_4:60392861-60392880 | Msa0339310:CDS | 35.0% | |
| AAGCAGTGATAGATGGAATT+GGG | - | chr2_4:60392862-60392881 | Msa0339310:CDS | 35.0% | |
| CTATGTAATGACATTCTTGC+TGG | + | chr2_4:60392921-60392940 | None:intergenic | 35.0% | |
| ATACATCAGCAAGTAGTTTG+TGG | - | chr2_4:60392949-60392968 | Msa0339310:CDS | 35.0% | |
| ! | AAGTAGTTTGTGGTATGTGT+TGG | - | chr2_4:60392959-60392978 | Msa0339310:CDS | 35.0% |
| ! | AGTAGTTTGTGGTATGTGTT+GGG | - | chr2_4:60392960-60392979 | Msa0339310:CDS | 35.0% |
| GCTAAGAAGAGGTTGAAAAA+AGG | - | chr2_4:60392993-60393012 | Msa0339310:CDS | 35.0% | |
| ! | TTGATGATAAGTTTAGGTGC+TGG | - | chr2_4:60393026-60393045 | Msa0339310:CDS | 35.0% |
| GAAGTAATGAGAGATGTTGT+TGG | - | chr2_4:60393074-60393093 | Msa0339310:CDS | 35.0% | |
| ! | CCAAGTTTTCTTTCATCACT+TGG | + | chr2_4:60391937-60391956 | None:intergenic | 35.0% |
| CCAAGTGATGAAAGAAAACT+TGG | - | chr2_4:60391934-60391953 | Msa0339310:CDS | 35.0% | |
| AAACTTGGAAGTGAACAATG+TGG | - | chr2_4:60391949-60391968 | Msa0339310:CDS | 35.0% | |
| GAACAATGTGGCAAGATTAT+AGG | - | chr2_4:60391961-60391980 | Msa0339310:CDS | 35.0% | |
| GCAAAGCTTCTAAACAAATC+AGG | - | chr2_4:60392156-60392175 | Msa0339310:CDS | 35.0% | |
| AGCTTATAACCTATCTGGTA+TGG | - | chr2_4:60392290-60392309 | Msa0339310:CDS | 35.0% | |
| GCTTATAACCTATCTGGTAT+GGG | - | chr2_4:60392291-60392310 | Msa0339310:CDS | 35.0% | |
| CAGAGTCTCTTAGTACAAAT+TGG | - | chr2_4:60392397-60392416 | Msa0339310:CDS | 35.0% | |
| TACGGAAAAGACAATTTGCA+AGG | + | chr2_4:60392449-60392468 | None:intergenic | 35.0% | |
| TGTCTAGTTAGAACTCATCA+TGG | - | chr2_4:60392537-60392556 | Msa0339310:CDS | 35.0% | |
| GAAGATGAACAAGGTAAACT+TGG | - | chr2_4:60392597-60392616 | Msa0339310:CDS | 35.0% | |
| !! | CTTTTGGAAGATCTTTAGCT+AGG | + | chr2_4:60392629-60392648 | None:intergenic | 35.0% |
| ! | CACCTAAAATTTTACCAGCT+AGG | - | chr2_4:60392688-60392707 | Msa0339310:CDS | 35.0% |
| ! | TCCCTAGCTGGTAAAATTTT+AGG | + | chr2_4:60392693-60392712 | None:intergenic | 35.0% |
| TACCAGCTAGGGAAATATTT+AGG | - | chr2_4:60392700-60392719 | Msa0339310:CDS | 35.0% | |
| TACCTAAATATTTCCCTAGC+TGG | + | chr2_4:60392705-60392724 | None:intergenic | 35.0% | |
| TCACCAGTGAATTTCAAAAC+AGG | - | chr2_4:60392807-60392826 | Msa0339310:CDS | 35.0% | |
| !!! | ACACCTGTTTTGAAATTCAC+TGG | + | chr2_4:60392813-60392832 | None:intergenic | 35.0% |
| ! | GATCATTTTGTTCTTCACAC+TGG | - | chr2_4:60392834-60392853 | Msa0339310:CDS | 35.0% |
| AAAGCAGTGATAGATGGAAT+TGG | - | chr2_4:60392861-60392880 | Msa0339310:CDS | 35.0% | |
| AAGCAGTGATAGATGGAATT+GGG | - | chr2_4:60392862-60392881 | Msa0339310:CDS | 35.0% | |
| CTATGTAATGACATTCTTGC+TGG | + | chr2_4:60392921-60392940 | None:intergenic | 35.0% | |
| ATACATCAGCAAGTAGTTTG+TGG | - | chr2_4:60392949-60392968 | Msa0339310:CDS | 35.0% | |
| ! | AAGTAGTTTGTGGTATGTGT+TGG | - | chr2_4:60392959-60392978 | Msa0339310:CDS | 35.0% |
| ! | AGTAGTTTGTGGTATGTGTT+GGG | - | chr2_4:60392960-60392979 | Msa0339310:CDS | 35.0% |
| GCTAAGAAGAGGTTGAAAAA+AGG | - | chr2_4:60392993-60393012 | Msa0339310:CDS | 35.0% | |
| ! | TTGATGATAAGTTTAGGTGC+TGG | - | chr2_4:60393026-60393045 | Msa0339310:CDS | 35.0% |
| GAAGTAATGAGAGATGTTGT+TGG | - | chr2_4:60393074-60393093 | Msa0339310:CDS | 35.0% | |
| CAAATCAGGCATTTCACCTT+CGG | - | chr2_4:60392170-60392189 | Msa0339310:CDS | 40.0% | |
| ACAAGAATATCGATCTCCGA+AGG | + | chr2_4:60392189-60392208 | None:intergenic | 40.0% | |
| TTCGGAGATCGATATTCTTG+TGG | - | chr2_4:60392188-60392207 | Msa0339310:CDS | 40.0% | |
| ! | GCAAATTGTCTTTTCCGTAC+CGG | - | chr2_4:60392450-60392469 | Msa0339310:CDS | 40.0% |
| !! | AAAGCTCTTGTAGCTGCTTT+TGG | + | chr2_4:60392645-60392664 | None:intergenic | 40.0% |
| ! | CATTTTGTTCTTCACACTGG+AGG | - | chr2_4:60392837-60392856 | Msa0339310:CDS | 40.0% |
| !! | ATGACATTCTTGCTGGTTCT+AGG | + | chr2_4:60392914-60392933 | None:intergenic | 40.0% |
| ! | GTAGTTTGTGGTATGTGTTG+GGG | - | chr2_4:60392961-60392980 | Msa0339310:CDS | 40.0% |
| GGTATATGGAAGCTAAGAAG+AGG | - | chr2_4:60392982-60393001 | Msa0339310:CDS | 40.0% | |
| !! | AGAGATGTTGTTGGTGATGA+TGG | - | chr2_4:60393083-60393102 | Msa0339310:CDS | 40.0% |
| !! | TTGGTGATGATGGAAATGTG+TGG | - | chr2_4:60393093-60393112 | Msa0339310:CDS | 40.0% |
| !! | TGGTGATGATGGAAATGTGT+GGG | - | chr2_4:60393094-60393113 | Msa0339310:CDS | 40.0% |
| TTACTATCCACCACACTCTT+TGG | - | chr2_4:60393130-60393149 | Msa0339310:CDS | 40.0% | |
| AACCCATTCATGGAGAAGTA+CGG | - | chr2_4:60393155-60393174 | Msa0339310:CDS | 40.0% | |
| AACCGTACTTCTCCATGAAT+GGG | + | chr2_4:60393160-60393179 | None:intergenic | 40.0% | |
| CAAATCAGGCATTTCACCTT+CGG | - | chr2_4:60392170-60392189 | Msa0339310:CDS | 40.0% | |
| ACAAGAATATCGATCTCCGA+AGG | + | chr2_4:60392189-60392208 | None:intergenic | 40.0% | |
| TTCGGAGATCGATATTCTTG+TGG | - | chr2_4:60392188-60392207 | Msa0339310:CDS | 40.0% | |
| ! | GCAAATTGTCTTTTCCGTAC+CGG | - | chr2_4:60392450-60392469 | Msa0339310:CDS | 40.0% |
| !! | AAAGCTCTTGTAGCTGCTTT+TGG | + | chr2_4:60392645-60392664 | None:intergenic | 40.0% |
| ! | CATTTTGTTCTTCACACTGG+AGG | - | chr2_4:60392837-60392856 | Msa0339310:CDS | 40.0% |
| !! | ATGACATTCTTGCTGGTTCT+AGG | + | chr2_4:60392914-60392933 | None:intergenic | 40.0% |
| ! | GTAGTTTGTGGTATGTGTTG+GGG | - | chr2_4:60392961-60392980 | Msa0339310:CDS | 40.0% |
| GGTATATGGAAGCTAAGAAG+AGG | - | chr2_4:60392982-60393001 | Msa0339310:CDS | 40.0% | |
| !! | AGAGATGTTGTTGGTGATGA+TGG | - | chr2_4:60393083-60393102 | Msa0339310:CDS | 40.0% |
| !! | TTGGTGATGATGGAAATGTG+TGG | - | chr2_4:60393093-60393112 | Msa0339310:CDS | 40.0% |
| !! | TGGTGATGATGGAAATGTGT+GGG | - | chr2_4:60393094-60393113 | Msa0339310:CDS | 40.0% |
| TTACTATCCACCACACTCTT+TGG | - | chr2_4:60393130-60393149 | Msa0339310:CDS | 40.0% | |
| AACCCATTCATGGAGAAGTA+CGG | - | chr2_4:60393155-60393174 | Msa0339310:CDS | 40.0% | |
| AACCGTACTTCTCCATGAAT+GGG | + | chr2_4:60393160-60393179 | None:intergenic | 40.0% | |
| TGCACTTGTGTTTCCTGATC+TGG | - | chr2_4:60391851-60391870 | Msa0339310:CDS | 45.0% | |
| ! | ACCAATGCCTGAGTTGACAA+CGG | + | chr2_4:60392034-60392053 | None:intergenic | 45.0% |
| GCTCCAAGAAACTTCATCGA+AGG | - | chr2_4:60392066-60392085 | Msa0339310:CDS | 45.0% | |
| CACTACAACCCATACCAGAT+AGG | + | chr2_4:60392302-60392321 | None:intergenic | 45.0% | |
| ! | AATTGTCTTTTCCGTACCGG+CGG | - | chr2_4:60392453-60392472 | Msa0339310:CDS | 45.0% |
| ! | AACCATCTTGCAGCTGACTT+AGG | + | chr2_4:60392771-60392790 | None:intergenic | 45.0% |
| AAGTCAGCTGCAAGATGGTT+TGG | - | chr2_4:60392771-60392790 | Msa0339310:CDS | 45.0% | |
| GGAGGAAAAGCAGTGATAGA+TGG | - | chr2_4:60392855-60392874 | Msa0339310:CDS | 45.0% | |
| GTGGTATGTGTTGGGGTATA+TGG | - | chr2_4:60392968-60392987 | Msa0339310:CDS | 45.0% | |
| GTACTTCTCCATGAATGGGT+TGG | + | chr2_4:60393156-60393175 | None:intergenic | 45.0% | |
| CAACCGTACTTCTCCATGAA+TGG | + | chr2_4:60393161-60393180 | None:intergenic | 45.0% | |
| ! | CATTCATGGAGAAGTACGGT+TGG | - | chr2_4:60393159-60393178 | Msa0339310:CDS | 45.0% |
| TGCACTTGTGTTTCCTGATC+TGG | - | chr2_4:60391851-60391870 | Msa0339310:CDS | 45.0% | |
| ! | ACCAATGCCTGAGTTGACAA+CGG | + | chr2_4:60392034-60392053 | None:intergenic | 45.0% |
| GCTCCAAGAAACTTCATCGA+AGG | - | chr2_4:60392066-60392085 | Msa0339310:CDS | 45.0% | |
| CACTACAACCCATACCAGAT+AGG | + | chr2_4:60392302-60392321 | None:intergenic | 45.0% | |
| ! | AATTGTCTTTTCCGTACCGG+CGG | - | chr2_4:60392453-60392472 | Msa0339310:CDS | 45.0% |
| ! | AACCATCTTGCAGCTGACTT+AGG | + | chr2_4:60392771-60392790 | None:intergenic | 45.0% |
| AAGTCAGCTGCAAGATGGTT+TGG | - | chr2_4:60392771-60392790 | Msa0339310:CDS | 45.0% | |
| GGAGGAAAAGCAGTGATAGA+TGG | - | chr2_4:60392855-60392874 | Msa0339310:CDS | 45.0% | |
| GTGGTATGTGTTGGGGTATA+TGG | - | chr2_4:60392968-60392987 | Msa0339310:CDS | 45.0% | |
| GTACTTCTCCATGAATGGGT+TGG | + | chr2_4:60393156-60393175 | None:intergenic | 45.0% | |
| CAACCGTACTTCTCCATGAA+TGG | + | chr2_4:60393161-60393180 | None:intergenic | 45.0% | |
| ! | CATTCATGGAGAAGTACGGT+TGG | - | chr2_4:60393159-60393178 | Msa0339310:CDS | 45.0% |
| ! | CTGAGTTGACAACGGCTTTG+AGG | + | chr2_4:60392026-60392045 | None:intergenic | 50.0% |
| CTCAAAGCCGTTGTCAACTC+AGG | - | chr2_4:60392024-60392043 | Msa0339310:CDS | 50.0% | |
| !! | TGTCAACTCAGGCATTGGTG+AGG | - | chr2_4:60392035-60392054 | Msa0339310:CDS | 50.0% |
| CGGCCTTCGATGAAGTTTCT+TGG | + | chr2_4:60392072-60392091 | None:intergenic | 50.0% | |
| CCATCGTTGGGTTCACAGTT+CGG | + | chr2_4:60392092-60392111 | None:intergenic | 50.0% | |
| CCACTTCGTCTTCCATCGTT+GGG | + | chr2_4:60392104-60392123 | None:intergenic | 50.0% | |
| TCCACTTCGTCTTCCATCGT+TGG | + | chr2_4:60392105-60392124 | None:intergenic | 50.0% | |
| AACGATGGAAGACGAAGTGG+AGG | - | chr2_4:60392104-60392123 | Msa0339310:CDS | 50.0% | |
| GGAAGACGAAGTGGAGGAAA+TGG | - | chr2_4:60392110-60392129 | Msa0339310:CDS | 50.0% | |
| GAGAAGAATTGCACAACCGC+CGG | + | chr2_4:60392472-60392491 | None:intergenic | 50.0% | |
| CTCCTAAGTCAGCTGCAAGA+TGG | - | chr2_4:60392766-60392785 | Msa0339310:CDS | 50.0% | |
| !! | AATGGGTTGGCCAAAGAGTG+TGG | + | chr2_4:60393143-60393162 | None:intergenic | 50.0% |
| CTCTTTGGCCAACCCATTCA+TGG | - | chr2_4:60393145-60393164 | Msa0339310:CDS | 50.0% | |
| ! | CTGAGTTGACAACGGCTTTG+AGG | + | chr2_4:60392026-60392045 | None:intergenic | 50.0% |
| CTCAAAGCCGTTGTCAACTC+AGG | - | chr2_4:60392024-60392043 | Msa0339310:CDS | 50.0% | |
| !! | TGTCAACTCAGGCATTGGTG+AGG | - | chr2_4:60392035-60392054 | Msa0339310:CDS | 50.0% |
| CGGCCTTCGATGAAGTTTCT+TGG | + | chr2_4:60392072-60392091 | None:intergenic | 50.0% | |
| CCATCGTTGGGTTCACAGTT+CGG | + | chr2_4:60392092-60392111 | None:intergenic | 50.0% | |
| CCACTTCGTCTTCCATCGTT+GGG | + | chr2_4:60392104-60392123 | None:intergenic | 50.0% | |
| TCCACTTCGTCTTCCATCGT+TGG | + | chr2_4:60392105-60392124 | None:intergenic | 50.0% | |
| AACGATGGAAGACGAAGTGG+AGG | - | chr2_4:60392104-60392123 | Msa0339310:CDS | 50.0% | |
| GGAAGACGAAGTGGAGGAAA+TGG | - | chr2_4:60392110-60392129 | Msa0339310:CDS | 50.0% | |
| GAGAAGAATTGCACAACCGC+CGG | + | chr2_4:60392472-60392491 | None:intergenic | 50.0% | |
| CTCCTAAGTCAGCTGCAAGA+TGG | - | chr2_4:60392766-60392785 | Msa0339310:CDS | 50.0% | |
| !! | AATGGGTTGGCCAAAGAGTG+TGG | + | chr2_4:60393143-60393162 | None:intergenic | 50.0% |
| CTCTTTGGCCAACCCATTCA+TGG | - | chr2_4:60393145-60393164 | Msa0339310:CDS | 50.0% | |
| GCCGTTGTCAACTCAGGCAT+TGG | - | chr2_4:60392030-60392049 | Msa0339310:CDS | 55.0% | |
| CCGAACTGTGAACCCAACGA+TGG | - | chr2_4:60392089-60392108 | Msa0339310:CDS | 55.0% | |
| CCCAACGATGGAAGACGAAG+TGG | - | chr2_4:60392101-60392120 | Msa0339310:CDS | 55.0% | |
| GAATTGCACAACCGCCGGTA+CGG | + | chr2_4:60392467-60392486 | None:intergenic | 55.0% | |
| GCCGTTGTCAACTCAGGCAT+TGG | - | chr2_4:60392030-60392049 | Msa0339310:CDS | 55.0% | |
| CCGAACTGTGAACCCAACGA+TGG | - | chr2_4:60392089-60392108 | Msa0339310:CDS | 55.0% | |
| CCCAACGATGGAAGACGAAG+TGG | - | chr2_4:60392101-60392120 | Msa0339310:CDS | 55.0% | |
| GAATTGCACAACCGCCGGTA+CGG | + | chr2_4:60392467-60392486 | None:intergenic | 55.0% | |
| !! | GGGTTGGCCAAAGAGTGTGG+TGG | + | chr2_4:60393140-60393159 | None:intergenic | 60.0% |
| !! | GGGTTGGCCAAAGAGTGTGG+TGG | + | chr2_4:60393140-60393159 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 60391850 | 60393250 | 60391850 | ID=Msa0339310;Name=Msa0339310 |
| chr2_4 | mRNA | 60391850 | 60393250 | 60391850 | ID=Msa0339310-mRNA-1;Parent=Msa0339310;Name=Msa0339310-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|-1|0|1|-1|1|1|0|466 |
| chr2_4 | exon | 60391850 | 60393250 | 60391850 | ID=Msa0339310-mRNA-1:exon:18810;Parent=Msa0339310-mRNA-1 |
| chr2_4 | CDS | 60391850 | 60393250 | 60391850 | ID=Msa0339310-mRNA-1:cds;Parent=Msa0339310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
