Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287360 | sp|O96860|DYL2_DROME | 55.556 | 90 | 38 | 1 | 1 | 90 | 1 | 88 | 5.93e-29 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287360 | A0A072TRW8 | 98.165 | 109 | 2 | 0 | 1 | 109 | 1 | 109 | 5.80e-73 | 221 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000490 | Msa1287360 | -0.805372 | 1.377760e-49 | -8.615850e-47 |
| Msa0003470 | Msa1287360 | 0.804178 | 2.447412e-49 | -8.615850e-47 |
| Msa0008850 | Msa1287360 | 0.823649 | 1.235954e-53 | -8.615850e-47 |
| Msa0017120 | Msa1287360 | 0.808174 | 3.526067e-50 | -8.615850e-47 |
| Msa0038310 | Msa1287360 | 0.826587 | 2.500178e-54 | -8.615850e-47 |
| Msa0044710 | Msa1287360 | 0.802406 | 5.697098e-49 | -8.615850e-47 |
| Msa0047470 | Msa1287360 | 0.828106 | 1.080985e-54 | -8.615850e-47 |
| Msa0050720 | Msa1287360 | 0.801387 | 9.222948e-49 | -8.615850e-47 |
| Msa0068410 | Msa1287360 | 0.802321 | 5.930286e-49 | -8.615850e-47 |
| Msa0079250 | Msa1287360 | 0.825571 | 4.359092e-54 | -8.615850e-47 |
| Msa0083160 | Msa1287360 | 0.803607 | 3.215568e-49 | -8.615850e-47 |
| Msa0086090 | Msa1287360 | 0.813501 | 2.479491e-51 | -8.615850e-47 |
| Msa0607290 | Msa1287360 | -0.824809 | 6.599400e-54 | -8.615850e-47 |
| Msa0609970 | Msa1287360 | 0.827104 | 1.881213e-54 | -8.615850e-47 |
| Msa0614990 | Msa1287360 | 0.810631 | 1.046931e-50 | -8.615850e-47 |
| Msa0617830 | Msa1287360 | 0.819962 | 8.818033e-53 | -8.615850e-47 |
| Msa0622340 | Msa1287360 | 0.820205 | 7.756404e-53 | -8.615850e-47 |
| Msa0650620 | Msa1287360 | 0.864178 | 1.466154e-64 | -8.615850e-47 |
| Msa0650650 | Msa1287360 | 0.840333 | 9.261139e-58 | -8.615850e-47 |
| Msa0650730 | Msa1287360 | 0.807023 | 6.187978e-50 | -8.615850e-47 |
| Msa0650740 | Msa1287360 | 0.844349 | 7.989715e-59 | -8.615850e-47 |
| Msa0669850 | Msa1287360 | 0.831697 | 1.441294e-55 | -8.615850e-47 |
| Msa0692110 | Msa1287360 | 0.813501 | 2.479180e-51 | -8.615850e-47 |
| Msa0694250 | Msa1287360 | 0.804710 | 1.895187e-49 | -8.615850e-47 |
| Msa0738850 | Msa1287360 | 0.814045 | 1.881155e-51 | -8.615850e-47 |
| Msa0738860 | Msa1287360 | 0.809380 | 1.946709e-50 | -8.615850e-47 |
| Msa0738880 | Msa1287360 | 0.813012 | 3.174120e-51 | -8.615850e-47 |
| Msa0743640 | Msa1287360 | 0.812749 | 3.624360e-51 | -8.615850e-47 |
| Msa0755090 | Msa1287360 | 0.816115 | 6.531161e-52 | -8.615850e-47 |
| Msa0783270 | Msa1287360 | 0.820546 | 6.479630e-53 | -8.615850e-47 |
| Msa0787720 | Msa1287360 | 0.838449 | 2.856248e-57 | -8.615850e-47 |
| Msa0792090 | Msa1287360 | 0.806421 | 8.295963e-50 | -8.615850e-47 |
| Msa0819320 | Msa1287360 | 0.804857 | 1.766317e-49 | -8.615850e-47 |
| Msa0819370 | Msa1287360 | 0.813472 | 2.515434e-51 | -8.615850e-47 |
| Msa0834460 | Msa1287360 | 0.816671 | 4.904653e-52 | -8.615850e-47 |
| Msa0132620 | Msa1287360 | 0.812259 | 4.639552e-51 | -8.615850e-47 |
| Msa0136390 | Msa1287360 | 0.804302 | 2.306281e-49 | -8.615850e-47 |
| Msa0143080 | Msa1287360 | 0.830304 | 3.166705e-55 | -8.615850e-47 |
| Msa0145950 | Msa1287360 | 0.832561 | 8.810286e-56 | -8.615850e-47 |
| Msa0168640 | Msa1287360 | -0.815764 | 7.822584e-52 | -8.615850e-47 |
| Msa0178990 | Msa1287360 | 0.811322 | 7.417730e-51 | -8.615850e-47 |
| Msa0185390 | Msa1287360 | 0.834585 | 2.752636e-56 | -8.615850e-47 |
| Msa0194970 | Msa1287360 | 0.838810 | 2.304854e-57 | -8.615850e-47 |
| Msa0223100 | Msa1287360 | 0.856699 | 2.695863e-62 | -8.615850e-47 |
| Msa0223290 | Msa1287360 | 0.860368 | 2.168261e-63 | -8.615850e-47 |
| Msa0223380 | Msa1287360 | 0.836092 | 1.145764e-56 | -8.615850e-47 |
| Msa0236980 | Msa1287360 | 0.830186 | 3.384511e-55 | -8.615850e-47 |
| Msa1236070 | Msa1287360 | -0.804705 | 1.900382e-49 | -8.615850e-47 |
| Msa1241820 | Msa1287360 | 0.810922 | 9.059869e-51 | -8.615850e-47 |
| Msa1246370 | Msa1287360 | 0.885396 | 8.433540e-72 | -8.615850e-47 |
| Msa1282920 | Msa1287360 | 0.817603 | 3.027508e-52 | -8.615850e-47 |
| Msa1286680 | Msa1287360 | 0.916260 | 2.205612e-85 | -8.615850e-47 |
| Msa1287360 | Msa1306200 | 0.803828 | 2.893947e-49 | -8.615850e-47 |
| Msa1287360 | Msa1334650 | 0.806251 | 9.005738e-50 | -8.615850e-47 |
| Msa1287360 | Msa1335720 | 0.807798 | 4.238513e-50 | -8.615850e-47 |
| Msa1287360 | Msa1354090 | 0.806599 | 7.608554e-50 | -8.615850e-47 |
| Msa1287360 | Msa1381130 | 0.831618 | 1.507656e-55 | -8.615850e-47 |
| Msa1287360 | Msa1412080 | 0.817463 | 3.255943e-52 | -8.615850e-47 |
| Msa1287360 | Msa1419110 | 0.813224 | 2.852504e-51 | -8.615850e-47 |
| Msa1287360 | Msa1432640 | 0.824585 | 7.452286e-54 | -8.615850e-47 |
| Msa1287360 | Msa1439230 | 0.822012 | 2.973479e-53 | -8.615850e-47 |
| Msa1287360 | Msa1440180 | 0.812933 | 3.304524e-51 | -8.615850e-47 |
| Msa1287360 | Msa1444450 | 0.807925 | 3.983001e-50 | -8.615850e-47 |
| Msa1287360 | Msa1449740 | 0.813473 | 2.514551e-51 | -8.615850e-47 |
| Msa1287360 | Msa1450980 | 0.842895 | 1.954945e-58 | -8.615850e-47 |
| Msa1287360 | Msa1452470 | 0.805449 | 1.327936e-49 | -8.615850e-47 |
| Msa1287360 | Msa1456650 | 0.805680 | 1.187439e-49 | -8.615850e-47 |
| Msa0371070 | Msa1287360 | 0.809947 | 1.470858e-50 | -8.615850e-47 |
| Msa0401340 | Msa1287360 | 0.812274 | 4.602874e-51 | -8.615850e-47 |
| Msa0414780 | Msa1287360 | 0.817886 | 2.613176e-52 | -8.615850e-47 |
| Msa0421800 | Msa1287360 | 0.830819 | 2.369226e-55 | -8.615850e-47 |
| Msa0426810 | Msa1287360 | 0.805515 | 1.286198e-49 | -8.615850e-47 |
| Msa0431520 | Msa1287360 | 0.806348 | 8.591493e-50 | -8.615850e-47 |
| Msa0431830 | Msa1287360 | 0.821767 | 3.388998e-53 | -8.615850e-47 |
| Msa0440130 | Msa1287360 | -0.809781 | 1.597018e-50 | -8.615850e-47 |
| Msa0448080 | Msa1287360 | 0.829123 | 6.139208e-55 | -8.615850e-47 |
| Msa0448120 | Msa1287360 | 0.809778 | 1.599336e-50 | -8.615850e-47 |
| Msa0467800 | Msa1287360 | 0.824893 | 6.304375e-54 | -8.615850e-47 |
| Msa0467880 | Msa1287360 | 0.817896 | 2.600082e-52 | -8.615850e-47 |
| Msa0482680 | Msa1287360 | 0.838454 | 2.848021e-57 | -8.615850e-47 |
| Msa1015060 | Msa1287360 | 0.845713 | 3.421559e-59 | -8.615850e-47 |
| Msa1038320 | Msa1287360 | 0.805010 | 1.640824e-49 | -8.615850e-47 |
| Msa1043870 | Msa1287360 | 0.806742 | 7.095913e-50 | -8.615850e-47 |
| Msa1081000 | Msa1287360 | 0.822213 | 2.671006e-53 | -8.615850e-47 |
| Msa1092820 | Msa1287360 | 0.836235 | 1.054173e-56 | -8.615850e-47 |
| Msa0252180 | Msa1287360 | 0.803074 | 4.146636e-49 | -8.615850e-47 |
| Msa0259330 | Msa1287360 | 0.839292 | 1.728718e-57 | -8.615850e-47 |
| Msa0260180 | Msa1287360 | 0.803252 | 3.810158e-49 | -8.615850e-47 |
| Msa0275030 | Msa1287360 | 0.810660 | 1.031965e-50 | -8.615850e-47 |
| Msa0288240 | Msa1287360 | 0.832405 | 9.633039e-56 | -8.615850e-47 |
| Msa0288330 | Msa1287360 | 0.808129 | 3.604925e-50 | -8.615850e-47 |
| Msa0299790 | Msa1287360 | 0.821598 | 3.708057e-53 | -8.615850e-47 |
| Msa0302650 | Msa1287360 | 0.839118 | 1.918738e-57 | -8.615850e-47 |
| Msa0326670 | Msa1287360 | 0.831253 | 1.854097e-55 | -8.615850e-47 |
| Msa0328210 | Msa1287360 | 0.828488 | 8.744622e-55 | -8.615850e-47 |
| Msa0339870 | Msa1287360 | 0.809380 | 1.947007e-50 | -8.615850e-47 |
| Msa1119720 | Msa1287360 | 0.800056 | 1.723958e-48 | -8.615850e-47 |
| Msa1126120 | Msa1287360 | -0.806703 | 7.232390e-50 | -8.615850e-47 |
| Msa1131420 | Msa1287360 | 0.831716 | 1.426073e-55 | -8.615850e-47 |
| Msa1134560 | Msa1287360 | 0.810372 | 1.190805e-50 | -8.615850e-47 |
| Msa1184580 | Msa1287360 | 0.808829 | 2.554611e-50 | -8.615850e-47 |
| Msa1218650 | Msa1287360 | 0.831105 | 2.015517e-55 | -8.615850e-47 |
| Msa1220740 | Msa1287360 | 0.815269 | 1.008017e-51 | -8.615850e-47 |
| Msa0508610 | Msa1287360 | 0.812818 | 3.500448e-51 | -8.615850e-47 |
| Msa0508650 | Msa1287360 | 0.802469 | 5.528916e-49 | -8.615850e-47 |
| Msa0514260 | Msa1287360 | 0.821813 | 3.307517e-53 | -8.615850e-47 |
| Msa0535030 | Msa1287360 | 0.800849 | 1.187985e-48 | -8.615850e-47 |
| Msa0535060 | Msa1287360 | 0.804399 | 2.201088e-49 | -8.615850e-47 |
| Msa0553220 | Msa1287360 | -0.806424 | 8.280609e-50 | -8.615850e-47 |
| Msa0575990 | Msa1287360 | -0.811645 | 6.310846e-51 | -8.615850e-47 |
| Msa0576100 | Msa1287360 | -0.809394 | 1.933605e-50 | -8.615850e-47 |
| Msa0579340 | Msa1287360 | 0.860268 | 2.325005e-63 | -8.615850e-47 |
| Msa0581920 | Msa1287360 | 0.809274 | 2.051474e-50 | -8.615850e-47 |
| Msa0583790 | Msa1287360 | 0.819508 | 1.119213e-52 | -8.615850e-47 |
| Msa0591770 | Msa1287360 | 0.805219 | 1.483411e-49 | -8.615850e-47 |
| Msa0859530 | Msa1287360 | 0.824949 | 6.117769e-54 | -8.615850e-47 |
| Msa0863760 | Msa1287360 | 0.812842 | 3.459623e-51 | -8.615850e-47 |
| Msa0899700 | Msa1287360 | 0.820719 | 5.910757e-53 | -8.615850e-47 |
| Msa0934830 | Msa1287360 | 0.818244 | 2.168970e-52 | -8.615850e-47 |
| Msa0942730 | Msa1287360 | 0.810727 | 9.981845e-51 | -8.615850e-47 |
| Msa0950620 | Msa1287360 | 0.838943 | 2.129714e-57 | -8.615850e-47 |
| Msa0955260 | Msa1287360 | 0.801651 | 8.144399e-49 | -8.615850e-47 |
| Msa0958020 | Msa1287360 | 0.816822 | 4.536741e-52 | -8.615850e-47 |
| Msa0964680 | Msa1287360 | 0.804954 | 1.685718e-49 | -8.615850e-47 |
| Msa0971860 | Msa1287360 | 0.837063 | 6.484917e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287360 | MtrunA17_Chr8g0360861 | 98.165 | 109 | 2 | 0 | 1 | 109 | 1 | 109 | 1.12e-76 | 221 |
| Msa1287360 | MtrunA17_Chr6g0485891 | 50.538 | 93 | 46 | 0 | 1 | 93 | 35 | 127 | 8.05e-30 | 103 |
| Msa1287360 | MtrunA17_Chr2g0331651 | 55.556 | 90 | 40 | 0 | 1 | 90 | 1 | 90 | 1.56e-29 | 101 |
| Msa1287360 | MtrunA17_Chr4g0067531 | 48.837 | 86 | 42 | 1 | 5 | 90 | 46 | 129 | 6.24e-26 | 94.0 |
| Msa1287360 | MtrunA17_Chr4g0063491 | 49.367 | 79 | 40 | 0 | 11 | 89 | 159 | 237 | 9.14e-22 | 85.9 |
| Msa1287360 | MtrunA17_Chr8g0391451 | 45.882 | 85 | 44 | 1 | 12 | 94 | 60 | 144 | 3.09e-19 | 77.0 |
| Msa1287360 | MtrunA17_Chr4g0059791 | 50.633 | 79 | 38 | 1 | 12 | 89 | 222 | 300 | 2.64e-18 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287360 | AT4G27360.1 | 70.874 | 103 | 30 | 0 | 1 | 103 | 1 | 103 | 1.33e-49 | 153 |
| Msa1287360 | AT3G16120.2 | 55.435 | 92 | 41 | 0 | 1 | 92 | 1 | 92 | 8.81e-33 | 110 |
| Msa1287360 | AT3G16120.1 | 55.435 | 92 | 41 | 0 | 1 | 92 | 1 | 92 | 8.81e-33 | 110 |
| Msa1287360 | AT1G52245.1 | 51.064 | 94 | 46 | 0 | 1 | 94 | 1 | 94 | 4.11e-30 | 103 |
| Msa1287360 | AT4G15930.1 | 49.412 | 85 | 41 | 1 | 5 | 89 | 39 | 121 | 7.44e-24 | 88.6 |
| Msa1287360 | AT5G20110.1 | 46.988 | 83 | 44 | 0 | 12 | 94 | 123 | 205 | 5.24e-21 | 83.6 |
| Msa1287360 | AT1G23220.1 | 39.773 | 88 | 52 | 1 | 8 | 94 | 38 | 125 | 5.70e-18 | 73.9 |
| Msa1287360 | AT4G15930.2 | 49.180 | 61 | 29 | 1 | 5 | 65 | 39 | 97 | 1.87e-13 | 61.2 |
Find 29 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTATTAAAAGAAAATTTA+AGG | 0.130933 | 8_3:+37644418 | None:intergenic |
| TGCATTGTAGGCACTGATTT+TGG | 0.221609 | 8_3:-37644731 | Msa1287360:CDS |
| GCACAAGAGTAGAACAAAAT+AGG | 0.295751 | 8_3:+37645075 | None:intergenic |
| CAGGAATTTGATAGGGTTCA+TGG | 0.298316 | 8_3:-37644767 | Msa1287360:CDS |
| CAGTTACATCATAGAAATCT+AGG | 0.300776 | 8_3:+37644912 | None:intergenic |
| AATTATTGCAGGAATTTGAT+AGG | 0.304941 | 8_3:-37644775 | Msa1287360:intron |
| ATCATAGAAATCTAGGGCTT+TGG | 0.353606 | 8_3:+37644919 | None:intergenic |
| CTTCAATTCATCATGCTAGA+AGG | 0.354098 | 8_3:-37645007 | Msa1287360:exon |
| TCTATTAAAAGAAAATTTAA+GGG | 0.380118 | 8_3:+37644419 | None:intergenic |
| TTGCTCTTTAAGGGATCTGC+TGG | 0.420352 | 8_3:-37644647 | Msa1287360:CDS |
| CCTGGTTGGCAATGCATTGT+AGG | 0.440795 | 8_3:-37644743 | Msa1287360:CDS |
| CTAGAAGGCAAGGCAGTGAT+TGG | 0.481296 | 8_3:-37644992 | Msa1287360:CDS |
| TAGATTAAAGATAAAGTGAT+GGG | 0.498796 | 8_3:+37645126 | None:intergenic |
| CCTACAATGCATTGCCAACC+AGG | 0.504627 | 8_3:+37644743 | None:intergenic |
| AAATCAGTTCTCAGCAATAG+AGG | 0.512873 | 8_3:-37644609 | Msa1287360:CDS |
| TATAGCTCGATTTATAAAGA+AGG | 0.514762 | 8_3:-37644879 | Msa1287360:intron |
| TTTGATAGGGTTCATGGACC+TGG | 0.522418 | 8_3:-37644761 | Msa1287360:CDS |
| ATTATTGCAGGAATTTGATA+GGG | 0.524356 | 8_3:-37644774 | Msa1287360:intron |
| TATAAATCGAGCTATATCAA+TGG | 0.561045 | 8_3:+37644886 | None:intergenic |
| ATCTGCTGGTCCACAAGCAG+AGG | 0.571115 | 8_3:-37644633 | Msa1287360:CDS |
| GTAGATTAAAGATAAAGTGA+TGG | 0.580576 | 8_3:+37645125 | None:intergenic |
| ATTCATCATGCTAGAAGGCA+AGG | 0.581622 | 8_3:-37645002 | Msa1287360:exon |
| TCCTTTGTGACACATTGTAG+TGG | 0.583602 | 8_3:-37644707 | Msa1287360:CDS |
| AGTTACATCATAGAAATCTA+GGG | 0.585718 | 8_3:+37644913 | None:intergenic |
| ATAGGGTTCATGGACCTGGT+TGG | 0.594187 | 8_3:-37644757 | Msa1287360:CDS |
| GATTAAAGATAAAGTGATGG+GGG | 0.605952 | 8_3:+37645128 | None:intergenic |
| GCCACTACAATGTGTCACAA+AGG | 0.659746 | 8_3:+37644706 | None:intergenic |
| AGATTAAAGATAAAGTGATG+GGG | 0.675381 | 8_3:+37645127 | None:intergenic |
| AGATTTCTATGATGTAACTG+AGG | 0.680263 | 8_3:-37644909 | Msa1287360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATTTGAAAAACAAAATA+TGG | - | chr8_3:37645095-37645114 | Msa1287360:five_prime_UTR | 15.0% |
| !! | AAGATTTGAAAAACAAAATA+TGG | - | chr8_3:37645095-37645114 | Msa1287360:five_prime_UTR | 15.0% |
| !! | TAGATTAAAGATAAAGTGAT+GGG | + | chr8_3:37644470-37644489 | None:intergenic | 20.0% |
| !!! | ATAGGCTACTTTTTTTTTAT+TGG | + | chr8_3:37644503-37644522 | None:intergenic | 20.0% |
| !! | GGTAATAAAATAAAACTAAG+AGG | - | chr8_3:37644735-37644754 | Msa1287360:CDS | 20.0% |
| !!! | ATGTAAGTTTTAAAACTAGA+GGG | + | chr8_3:37645148-37645167 | None:intergenic | 20.0% |
| !!! | AATGTAAGTTTTAAAACTAG+AGG | + | chr8_3:37645149-37645168 | None:intergenic | 20.0% |
| !! | TAGATTAAAGATAAAGTGAT+GGG | + | chr8_3:37644470-37644489 | None:intergenic | 20.0% |
| !!! | ATAGGCTACTTTTTTTTTAT+TGG | + | chr8_3:37644503-37644522 | None:intergenic | 20.0% |
| !! | GGTAATAAAATAAAACTAAG+AGG | - | chr8_3:37644735-37644754 | Msa1287360:CDS | 20.0% |
| !!! | ATGTAAGTTTTAAAACTAGA+GGG | + | chr8_3:37645148-37645167 | None:intergenic | 20.0% |
| !!! | AATGTAAGTTTTAAAACTAG+AGG | + | chr8_3:37645149-37645168 | None:intergenic | 20.0% |
| ! | AGATTAAAGATAAAGTGATG+GGG | + | chr8_3:37644469-37644488 | None:intergenic | 25.0% |
| ! | GTAGATTAAAGATAAAGTGA+TGG | + | chr8_3:37644471-37644490 | None:intergenic | 25.0% |
| ! | AGTTACATCATAGAAATCTA+GGG | + | chr8_3:37644683-37644702 | None:intergenic | 25.0% |
| ! | TATAAATCGAGCTATATCAA+TGG | + | chr8_3:37644710-37644729 | None:intergenic | 25.0% |
| ! | TATAGCTCGATTTATAAAGA+AGG | - | chr8_3:37644714-37644733 | Msa1287360:CDS | 25.0% |
| ! | AAACTAAGAGGATTGTTTAT+TGG | - | chr8_3:37644747-37644766 | Msa1287360:CDS | 25.0% |
| ! | ATGTGTTAGTTAATTATTGC+AGG | - | chr8_3:37644807-37644826 | Msa1287360:intron | 25.0% |
| ! | AATTATTGCAGGAATTTGAT+AGG | - | chr8_3:37644818-37644837 | Msa1287360:intron | 25.0% |
| ! | ATTATTGCAGGAATTTGATA+GGG | - | chr8_3:37644819-37644838 | Msa1287360:intron | 25.0% |
| !!! | TGCTTCATCTATTTTTGTAT+AGG | - | chr8_3:37644910-37644929 | Msa1287360:CDS | 25.0% |
| !!! | CTATTTTTGTATAGGTAGTA+TGG | - | chr8_3:37644918-37644937 | Msa1287360:CDS | 25.0% |
| !!! | TGTAAGTTTTAAAACTAGAG+GGG | + | chr8_3:37645147-37645166 | None:intergenic | 25.0% |
| ! | AGATTAAAGATAAAGTGATG+GGG | + | chr8_3:37644469-37644488 | None:intergenic | 25.0% |
| ! | GTAGATTAAAGATAAAGTGA+TGG | + | chr8_3:37644471-37644490 | None:intergenic | 25.0% |
| ! | AGTTACATCATAGAAATCTA+GGG | + | chr8_3:37644683-37644702 | None:intergenic | 25.0% |
| ! | TATAAATCGAGCTATATCAA+TGG | + | chr8_3:37644710-37644729 | None:intergenic | 25.0% |
| ! | TATAGCTCGATTTATAAAGA+AGG | - | chr8_3:37644714-37644733 | Msa1287360:CDS | 25.0% |
| ! | AAACTAAGAGGATTGTTTAT+TGG | - | chr8_3:37644747-37644766 | Msa1287360:CDS | 25.0% |
| ! | ATGTGTTAGTTAATTATTGC+AGG | - | chr8_3:37644807-37644826 | Msa1287360:intron | 25.0% |
| ! | AATTATTGCAGGAATTTGAT+AGG | - | chr8_3:37644818-37644837 | Msa1287360:intron | 25.0% |
| ! | ATTATTGCAGGAATTTGATA+GGG | - | chr8_3:37644819-37644838 | Msa1287360:intron | 25.0% |
| !!! | TGCTTCATCTATTTTTGTAT+AGG | - | chr8_3:37644910-37644929 | Msa1287360:CDS | 25.0% |
| !!! | CTATTTTTGTATAGGTAGTA+TGG | - | chr8_3:37644918-37644937 | Msa1287360:CDS | 25.0% |
| !!! | TGTAAGTTTTAAAACTAGAG+GGG | + | chr8_3:37645147-37645166 | None:intergenic | 25.0% |
| GATTAAAGATAAAGTGATGG+GGG | + | chr8_3:37644468-37644487 | None:intergenic | 30.0% | |
| CAGTTACATCATAGAAATCT+AGG | + | chr8_3:37644684-37644703 | None:intergenic | 30.0% | |
| AGATTTCTATGATGTAACTG+AGG | - | chr8_3:37644684-37644703 | Msa1287360:CDS | 30.0% | |
| ! | TATGGCAATTTTGCTCTTTA+AGG | - | chr8_3:37644936-37644955 | Msa1287360:CDS | 30.0% |
| ! | ATGGCAATTTTGCTCTTTAA+GGG | - | chr8_3:37644937-37644956 | Msa1287360:CDS | 30.0% |
| TGAAAAACAAAATATGGCAG+AGG | - | chr8_3:37645101-37645120 | Msa1287360:five_prime_UTR | 30.0% | |
| !!! | GTAAGTTTTAAAACTAGAGG+GGG | + | chr8_3:37645146-37645165 | None:intergenic | 30.0% |
| GATTAAAGATAAAGTGATGG+GGG | + | chr8_3:37644468-37644487 | None:intergenic | 30.0% | |
| CAGTTACATCATAGAAATCT+AGG | + | chr8_3:37644684-37644703 | None:intergenic | 30.0% | |
| AGATTTCTATGATGTAACTG+AGG | - | chr8_3:37644684-37644703 | Msa1287360:CDS | 30.0% | |
| ! | TATGGCAATTTTGCTCTTTA+AGG | - | chr8_3:37644936-37644955 | Msa1287360:CDS | 30.0% |
| ! | ATGGCAATTTTGCTCTTTAA+GGG | - | chr8_3:37644937-37644956 | Msa1287360:CDS | 30.0% |
| TGAAAAACAAAATATGGCAG+AGG | - | chr8_3:37645101-37645120 | Msa1287360:five_prime_UTR | 30.0% | |
| !!! | GTAAGTTTTAAAACTAGAGG+GGG | + | chr8_3:37645146-37645165 | None:intergenic | 30.0% |
| GCACAAGAGTAGAACAAAAT+AGG | + | chr8_3:37644521-37644540 | None:intergenic | 35.0% | |
| CTTCAATTCATCATGCTAGA+AGG | - | chr8_3:37644586-37644605 | Msa1287360:exon | 35.0% | |
| ! | ATCATAGAAATCTAGGGCTT+TGG | + | chr8_3:37644677-37644696 | None:intergenic | 35.0% |
| AAATCAGTTCTCAGCAATAG+AGG | - | chr8_3:37644984-37645003 | Msa1287360:CDS | 35.0% | |
| GCACAAGAGTAGAACAAAAT+AGG | + | chr8_3:37644521-37644540 | None:intergenic | 35.0% | |
| CTTCAATTCATCATGCTAGA+AGG | - | chr8_3:37644586-37644605 | Msa1287360:exon | 35.0% | |
| ! | ATCATAGAAATCTAGGGCTT+TGG | + | chr8_3:37644677-37644696 | None:intergenic | 35.0% |
| AAATCAGTTCTCAGCAATAG+AGG | - | chr8_3:37644984-37645003 | Msa1287360:CDS | 35.0% | |
| ATTCATCATGCTAGAAGGCA+AGG | - | chr8_3:37644591-37644610 | Msa1287360:exon | 40.0% | |
| CAGGAATTTGATAGGGTTCA+TGG | - | chr8_3:37644826-37644845 | Msa1287360:intron | 40.0% | |
| !!! | TGCATTGTAGGCACTGATTT+TGG | - | chr8_3:37644862-37644881 | Msa1287360:intron | 40.0% |
| TCCTTTGTGACACATTGTAG+TGG | - | chr8_3:37644886-37644905 | Msa1287360:CDS | 40.0% | |
| !! | AACTGATTTTCCTCTGCTTG+TGG | + | chr8_3:37644973-37644992 | None:intergenic | 40.0% |
| ! | TTTAAAACTAGAGGGGGTGT+TGG | + | chr8_3:37645140-37645159 | None:intergenic | 40.0% |
| ATTCATCATGCTAGAAGGCA+AGG | - | chr8_3:37644591-37644610 | Msa1287360:exon | 40.0% | |
| CAGGAATTTGATAGGGTTCA+TGG | - | chr8_3:37644826-37644845 | Msa1287360:intron | 40.0% | |
| !!! | TGCATTGTAGGCACTGATTT+TGG | - | chr8_3:37644862-37644881 | Msa1287360:intron | 40.0% |
| TCCTTTGTGACACATTGTAG+TGG | - | chr8_3:37644886-37644905 | Msa1287360:CDS | 40.0% | |
| !! | AACTGATTTTCCTCTGCTTG+TGG | + | chr8_3:37644973-37644992 | None:intergenic | 40.0% |
| ! | TTTAAAACTAGAGGGGGTGT+TGG | + | chr8_3:37645140-37645159 | None:intergenic | 40.0% |
| ! | GATAAAGTGATGGGGGATGA+TGG | + | chr8_3:37644461-37644480 | None:intergenic | 45.0% |
| TTTGATAGGGTTCATGGACC+TGG | - | chr8_3:37644832-37644851 | Msa1287360:intron | 45.0% | |
| GCCACTACAATGTGTCACAA+AGG | + | chr8_3:37644890-37644909 | None:intergenic | 45.0% | |
| ! | TTGCTCTTTAAGGGATCTGC+TGG | - | chr8_3:37644946-37644965 | Msa1287360:CDS | 45.0% |
| ! | GATAAAGTGATGGGGGATGA+TGG | + | chr8_3:37644461-37644480 | None:intergenic | 45.0% |
| TTTGATAGGGTTCATGGACC+TGG | - | chr8_3:37644832-37644851 | Msa1287360:intron | 45.0% | |
| GCCACTACAATGTGTCACAA+AGG | + | chr8_3:37644890-37644909 | None:intergenic | 45.0% | |
| ! | TTGCTCTTTAAGGGATCTGC+TGG | - | chr8_3:37644946-37644965 | Msa1287360:CDS | 45.0% |
| ! | AAAGTGATGGGGGATGATGG+TGG | + | chr8_3:37644458-37644477 | None:intergenic | 50.0% |
| CTAGAAGGCAAGGCAGTGAT+TGG | - | chr8_3:37644601-37644620 | Msa1287360:CDS | 50.0% | |
| ATAGGGTTCATGGACCTGGT+TGG | - | chr8_3:37644836-37644855 | Msa1287360:intron | 50.0% | |
| CCTACAATGCATTGCCAACC+AGG | + | chr8_3:37644853-37644872 | None:intergenic | 50.0% | |
| CCTGGTTGGCAATGCATTGT+AGG | - | chr8_3:37644850-37644869 | Msa1287360:intron | 50.0% | |
| ! | AAAGTGATGGGGGATGATGG+TGG | + | chr8_3:37644458-37644477 | None:intergenic | 50.0% |
| CTAGAAGGCAAGGCAGTGAT+TGG | - | chr8_3:37644601-37644620 | Msa1287360:CDS | 50.0% | |
| ATAGGGTTCATGGACCTGGT+TGG | - | chr8_3:37644836-37644855 | Msa1287360:intron | 50.0% | |
| CCTACAATGCATTGCCAACC+AGG | + | chr8_3:37644853-37644872 | None:intergenic | 50.0% | |
| CCTGGTTGGCAATGCATTGT+AGG | - | chr8_3:37644850-37644869 | Msa1287360:intron | 50.0% | |
| ATCTGCTGGTCCACAAGCAG+AGG | - | chr8_3:37644960-37644979 | Msa1287360:CDS | 55.0% | |
| ATCTGCTGGTCCACAAGCAG+AGG | - | chr8_3:37644960-37644979 | Msa1287360:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 37644428 | 37645187 | 37644428 | ID=Msa1287360;Name=Msa1287360 |
| chr8_3 | mRNA | 37644428 | 37645187 | 37644428 | ID=Msa1287360-mRNA-1;Parent=Msa1287360;Name=Msa1287360-mRNA-1;_AED=0.06;_eAED=0.06;_QI=170|1|1|1|1|1|2|167|109 |
| chr8_3 | exon | 37644428 | 37644786 | 37644428 | ID=Msa1287360-mRNA-1:exon:10791;Parent=Msa1287360-mRNA-1 |
| chr8_3 | exon | 37644880 | 37645187 | 37644880 | ID=Msa1287360-mRNA-1:exon:10790;Parent=Msa1287360-mRNA-1 |
| chr8_3 | five_prime_UTR | 37645018 | 37645187 | 37645018 | ID=Msa1287360-mRNA-1:five_prime_utr;Parent=Msa1287360-mRNA-1 |
| chr8_3 | CDS | 37644880 | 37645017 | 37644880 | ID=Msa1287360-mRNA-1:cds;Parent=Msa1287360-mRNA-1 |
| chr8_3 | CDS | 37644595 | 37644786 | 37644595 | ID=Msa1287360-mRNA-1:cds;Parent=Msa1287360-mRNA-1 |
| chr8_3 | three_prime_UTR | 37644428 | 37644594 | 37644428 | ID=Msa1287360-mRNA-1:three_prime_utr;Parent=Msa1287360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
