Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076670 | XP_003590675.1 | 98.374 | 246 | 4 | 0 | 1 | 246 | 1 | 246 | 8.96e-176 | 493 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076670 | G7IEF7 | 98.374 | 246 | 4 | 0 | 1 | 246 | 1 | 246 | 4.28e-176 | 493 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004790 | Msa0076670 | -0.844664 | 6.573540e-59 | -8.615850e-47 |
| Msa0076670 | Msa0096940 | -0.805687 | 1.183473e-49 | -8.615850e-47 |
| Msa0076670 | Msa0144970 | -0.802028 | 6.811662e-49 | -8.615850e-47 |
| Msa0076670 | Msa0171300 | 0.817212 | 3.706368e-52 | -8.615850e-47 |
| Msa0076670 | Msa0177700 | -0.810945 | 8.953181e-51 | -8.615850e-47 |
| Msa0076670 | Msa0197660 | 0.812140 | 4.924327e-51 | -8.615850e-47 |
| Msa0076670 | Msa0239800 | 0.814890 | 1.223208e-51 | -8.615850e-47 |
| Msa0076670 | Msa0268090 | 0.807790 | 4.254424e-50 | -8.615850e-47 |
| Msa0076670 | Msa0317510 | 0.815862 | 7.436012e-52 | -8.615850e-47 |
| Msa0076670 | Msa0344870 | 0.804656 | 1.945713e-49 | -8.615850e-47 |
| Msa0076670 | Msa0365490 | 0.839261 | 1.761550e-57 | -8.615850e-47 |
| Msa0076670 | Msa0371180 | 0.806032 | 1.001456e-49 | -8.615850e-47 |
| Msa0076670 | Msa0377530 | 0.832546 | 8.885894e-56 | -8.615850e-47 |
| Msa0076670 | Msa0378380 | 0.817650 | 2.954701e-52 | -8.615850e-47 |
| Msa0076670 | Msa0382870 | 0.814404 | 1.567596e-51 | -8.615850e-47 |
| Msa0076670 | Msa0388030 | -0.846811 | 1.717822e-59 | -8.615850e-47 |
| Msa0076670 | Msa0422500 | 0.848885 | 4.607024e-60 | -8.615850e-47 |
| Msa0076670 | Msa0427980 | 0.802657 | 5.056821e-49 | -8.615850e-47 |
| Msa0076670 | Msa0432930 | 0.808626 | 2.824360e-50 | -8.615850e-47 |
| Msa0076670 | Msa0445280 | 0.812593 | 3.922015e-51 | -8.615850e-47 |
| Msa0076670 | Msa0450350 | 0.848577 | 5.610280e-60 | -8.615850e-47 |
| Msa0076670 | Msa0458440 | 0.818309 | 2.096907e-52 | -8.615850e-47 |
| Msa0076670 | Msa0464900 | 0.801856 | 7.391041e-49 | -8.615850e-47 |
| Msa0076670 | Msa0473240 | 0.818982 | 1.475348e-52 | -8.615850e-47 |
| Msa0076670 | Msa0475580 | 0.801452 | 8.946154e-49 | -8.615850e-47 |
| Msa0076670 | Msa0477020 | 0.808954 | 2.402807e-50 | -8.615850e-47 |
| Msa0076670 | Msa0505060 | 0.802780 | 4.768588e-49 | -8.615850e-47 |
| Msa0076670 | Msa0511250 | 0.842888 | 1.964000e-58 | -8.615850e-47 |
| Msa0076670 | Msa0517490 | 0.847171 | 1.368563e-59 | -8.615850e-47 |
| Msa0076670 | Msa0518560 | 0.810989 | 8.759550e-51 | -8.615850e-47 |
| Msa0076670 | Msa0519220 | 0.802127 | 6.502087e-49 | -8.615850e-47 |
| Msa0076670 | Msa0532540 | 0.856912 | 2.334068e-62 | -8.615850e-47 |
| Msa0076670 | Msa0567020 | 0.810922 | 9.060643e-51 | -8.615850e-47 |
| Msa0076670 | Msa0589390 | 0.863344 | 2.662267e-64 | -8.615850e-47 |
| Msa0076670 | Msa0629630 | 0.818536 | 1.862581e-52 | -8.615850e-47 |
| Msa0076670 | Msa0629650 | 0.841287 | 5.207059e-58 | -8.615850e-47 |
| Msa0076670 | Msa0654010 | 0.806638 | 7.462713e-50 | -8.615850e-47 |
| Msa0076670 | Msa0658570 | 0.820918 | 5.321257e-53 | -8.615850e-47 |
| Msa0076670 | Msa0703490 | 0.806872 | 6.659923e-50 | -8.615850e-47 |
| Msa0076670 | Msa0713240 | 0.808702 | 2.719751e-50 | -8.615850e-47 |
| Msa0076670 | Msa0735160 | 0.804911 | 1.720646e-49 | -8.615850e-47 |
| Msa0076670 | Msa0755070 | 0.810475 | 1.131430e-50 | -8.615850e-47 |
| Msa0076670 | Msa0834440 | 0.820230 | 7.655096e-53 | -8.615850e-47 |
| Msa0076670 | Msa0849330 | 0.802103 | 6.574840e-49 | -8.615850e-47 |
| Msa0076670 | Msa1028270 | 0.828247 | 9.998483e-55 | -8.615850e-47 |
| Msa0076670 | Msa1046300 | 0.806572 | 7.708973e-50 | -8.615850e-47 |
| Msa0076670 | Msa1077670 | 0.820458 | 6.786525e-53 | -8.615850e-47 |
| Msa0076670 | Msa1219810 | 0.808105 | 3.646314e-50 | -8.615850e-47 |
| Msa0076670 | Msa1262750 | 0.847424 | 1.166437e-59 | -8.615850e-47 |
| Msa0076670 | Msa1267060 | 0.806765 | 7.016079e-50 | -8.615850e-47 |
| Msa0076670 | Msa1300090 | 0.816481 | 5.409457e-52 | -8.615850e-47 |
| Msa0076670 | Msa1310210 | 0.804726 | 1.880858e-49 | -8.615850e-47 |
| Msa0076670 | Msa1351090 | 0.801556 | 8.517760e-49 | -8.615850e-47 |
| Msa0076670 | Msa1371310 | 0.833943 | 3.988151e-56 | -8.615850e-47 |
| Msa0076670 | Msa1376890 | 0.827820 | 1.266839e-54 | -8.615850e-47 |
| Msa0076670 | Msa1393410 | 0.807769 | 4.299237e-50 | -8.615850e-47 |
| Msa0076670 | Msa1401530 | 0.812827 | 3.485051e-51 | -8.615850e-47 |
| Msa0076670 | Msa1435420 | 0.807078 | 6.025435e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076670 | MtrunA17_Chr1g0185731 | 98.374 | 246 | 4 | 0 | 1 | 246 | 1 | 246 | 8.24e-180 | 493 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0076670 | AT1G03250.1 | 65.385 | 234 | 80 | 1 | 14 | 246 | 12 | 245 | 2.04e-110 | 318 |
| Msa0076670 | AT1G03250.2 | 63.750 | 240 | 80 | 2 | 14 | 246 | 12 | 251 | 1.44e-107 | 311 |
| Msa0076670 | AT1G03250.4 | 67.935 | 184 | 59 | 0 | 14 | 197 | 12 | 195 | 3.28e-91 | 267 |
| Msa0076670 | AT1G03250.3 | 65.775 | 187 | 63 | 1 | 61 | 246 | 1 | 187 | 3.88e-88 | 259 |
Find 87 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTAATTTACAGTGATATT+TGG | 0.126281 | 1_2:+52876423 | None:intergenic |
| ACAATAAAACCCATTATTAT+TGG | 0.175296 | 1_2:-52876528 | Msa0076670:three_prime_UTR |
| GATGACCGTGTTCTTGTTCT+TGG | 0.209042 | 1_2:+52880099 | None:intergenic |
| CTCCATGCAGCAACAATCTA+TGG | 0.272538 | 1_2:+52877133 | None:intergenic |
| CTGAGAATATCCAATAATAA+TGG | 0.282704 | 1_2:+52876518 | None:intergenic |
| CCTTGGACATTCTCAGGAAA+TGG | 0.286871 | 1_2:+52876599 | None:intergenic |
| AAGGAAGTTGGTAGTTTGTT+TGG | 0.312522 | 1_2:-52876576 | Msa0076670:exon |
| AGGAAGTTGGTAGTTTGTTT+GGG | 0.330148 | 1_2:-52876575 | Msa0076670:exon |
| GAGTTCCTTGAAAGCTTTAC+CGG | 0.341348 | 1_2:-52879636 | Msa0076670:CDS |
| AACAATAAAATGTTGATTGT+TGG | 0.345828 | 1_2:-52876359 | Msa0076670:three_prime_UTR |
| AAACGAAATGAGATTGGATT+TGG | 0.349805 | 1_2:+52879902 | None:intergenic |
| CCTTTCCGGTAAAGCTTTCA+AGG | 0.354376 | 1_2:+52879631 | None:intergenic |
| ACAAGTTACACACACCTTTC+CGG | 0.368222 | 1_2:+52879617 | None:intergenic |
| TTCCTTCCTTGGACATTCTC+AGG | 0.369130 | 1_2:+52876593 | None:intergenic |
| TGAGAATATCCAATAATAAT+GGG | 0.370772 | 1_2:+52876519 | None:intergenic |
| AAATGGGACAGAGTGATCTT+TGG | 0.374769 | 1_2:+52876616 | None:intergenic |
| AACGTCTCCATCCGTGCTTT+CGG | 0.378587 | 1_2:+52877182 | None:intergenic |
| TGAAAATTCTTTAGAAAAGA+AGG | 0.380714 | 1_2:-52877487 | Msa0076670:CDS |
| TTAAATGCAGAGGAAATTAG+AGG | 0.385912 | 1_2:-52878657 | Msa0076670:CDS |
| TGATGATGCAGTTGGATCTA+AGG | 0.395545 | 1_2:+52879868 | None:intergenic |
| AAACTACCAACTTCCTTCCT+TGG | 0.422863 | 1_2:+52876582 | None:intergenic |
| AATGGGACAGAGTGATCTTT+GGG | 0.424462 | 1_2:+52876617 | None:intergenic |
| TGTTCTTGGAATGCAAGTCC+TGG | 0.429652 | 1_2:+52880113 | None:intergenic |
| GGATTGAAACGAAATGAGAT+TGG | 0.437012 | 1_2:+52879896 | None:intergenic |
| CAGAGTGATCTTTGGGAGCT+CGG | 0.446913 | 1_2:+52876624 | None:intergenic |
| GTTAAATGACCGTCTCTTGA+TGG | 0.448542 | 1_2:-52878694 | Msa0076670:CDS |
| CTTGGACATTCTCAGGAAAT+GGG | 0.448733 | 1_2:+52876600 | None:intergenic |
| TTCCATAGATTGTTGCTGCA+TGG | 0.453745 | 1_2:-52877135 | Msa0076670:CDS |
| TGAACTCATTGAGGGTTATG+AGG | 0.454211 | 1_2:-52877370 | Msa0076670:intron |
| TTGTTTGCTCCACCACCATT+TGG | 0.459862 | 1_2:-52878633 | Msa0076670:intron |
| TCAAGTCCCTCCCTTTGTAC+AGG | 0.477031 | 1_2:-52876487 | Msa0076670:three_prime_UTR |
| GAGATTAGCGGGTGACGGAC+CGG | 0.486060 | 1_2:-52880138 | None:intergenic |
| AGAGTGATCTTTGGGAGCTC+GGG | 0.490772 | 1_2:+52876625 | None:intergenic |
| GATAAACAAACTAGTGGAAG+AGG | 0.504358 | 1_2:+52879979 | None:intergenic |
| GCGGGTGACGGACCGGGTCC+AGG | 0.513912 | 1_2:-52880131 | Msa0076670:five_prime_UTR |
| TTACTCCCAGGAATGTCTAC+GGG | 0.514845 | 1_2:-52877214 | Msa0076670:intron |
| CCTTGAAAGCTTTACCGGAA+AGG | 0.517217 | 1_2:-52879631 | Msa0076670:intron |
| ATTACTCCCAGGAATGTCTA+CGG | 0.523989 | 1_2:-52877215 | Msa0076670:intron |
| TTAGTCAAGGAAAATGTTGA+AGG | 0.527300 | 1_2:+52878055 | None:intergenic |
| AGATTAGCGGGTGACGGACC+GGG | 0.527498 | 1_2:-52880137 | None:intergenic |
| ATTGTCCATCCCTGTACAAA+GGG | 0.529162 | 1_2:+52876477 | None:intergenic |
| TTGAATGGTTGGCGTAGAGT+TGG | 0.539891 | 1_2:-52877432 | Msa0076670:CDS |
| CTTGACTAATGTGGAGGAGT+GGG | 0.548978 | 1_2:-52878041 | Msa0076670:CDS |
| CTTTATTTCATAAGCTACAA+CGG | 0.549685 | 1_2:+52876330 | None:intergenic |
| TCCCTCCCTTTGTACAGGGA+TGG | 0.551766 | 1_2:-52876482 | Msa0076670:three_prime_UTR |
| TCACATTGATGCTGACAAGA+TGG | 0.561745 | 1_2:-52877460 | Msa0076670:CDS |
| CCTTGACTAATGTGGAGGAG+TGG | 0.563276 | 1_2:-52878042 | Msa0076670:CDS |
| GACAAGATGGCAGTGTTGAA+TGG | 0.567468 | 1_2:-52877447 | Msa0076670:CDS |
| TTCATAACCGAAAGCACGGA+TGG | 0.567629 | 1_2:-52877189 | Msa0076670:CDS |
| TTAAATGAGAAGAAAGGAGA+AGG | 0.567870 | 1_2:+52879813 | None:intergenic |
| AACTGCATCATCAATCATCA+TGG | 0.568703 | 1_2:-52879858 | Msa0076670:exon |
| GGTTGATTAAATGAGAAGAA+AGG | 0.572610 | 1_2:+52879807 | None:intergenic |
| GACACGGTGTCTGATTTGAA+TGG | 0.572877 | 1_2:-52876697 | Msa0076670:CDS |
| AGTCAAGATAAACAAACTAG+TGG | 0.574460 | 1_2:+52879973 | None:intergenic |
| AGAAAGAGATTAGCGGGTGA+CGG | 0.576063 | 1_2:-52880143 | None:intergenic |
| CAAGTCCCTCCCTTTGTACA+GGG | 0.576482 | 1_2:-52876486 | Msa0076670:three_prime_UTR |
| GTCAAGGAAAATGTTGAAGG+TGG | 0.583238 | 1_2:+52878058 | None:intergenic |
| TGTGTATATCTAAAACGAGA+TGG | 0.588571 | 1_2:-52876245 | Msa0076670:three_prime_UTR |
| TGCAGCAACAATCTATGGAA+AGG | 0.589866 | 1_2:+52877138 | None:intergenic |
| AGATGGCAGTGTTGAATGGT+TGG | 0.590241 | 1_2:-52877443 | Msa0076670:CDS |
| AAATATAGACATGGACAAAG+AGG | 0.593250 | 1_2:-52878008 | Msa0076670:intron |
| CCATTTCCTGAGAATGTCCA+AGG | 0.598890 | 1_2:-52876599 | Msa0076670:CDS |
| GAATGTCCAAGGAAGGAAGT+TGG | 0.599373 | 1_2:-52876588 | Msa0076670:CDS |
| GTCCATCCCTGTACAAAGGG+AGG | 0.600614 | 1_2:+52876480 | None:intergenic |
| ATGATGATTGATGATGCAGT+TGG | 0.601691 | 1_2:+52879860 | None:intergenic |
| TCCATCCCTGTACAAAGGGA+GGG | 0.606319 | 1_2:+52876481 | None:intergenic |
| GGCTTTCATAACCGAAAGCA+CGG | 0.607489 | 1_2:-52877193 | Msa0076670:CDS |
| CATTGTCCATCCCTGTACAA+AGG | 0.610866 | 1_2:+52876476 | None:intergenic |
| TGGAATGCAAGTCCTGGACC+CGG | 0.612829 | 1_2:+52880119 | None:intergenic |
| GAATAATTACCAAATGGTGG+TGG | 0.618067 | 1_2:+52878624 | None:intergenic |
| CCACTCCTCCACATTAGTCA+AGG | 0.618418 | 1_2:+52878042 | None:intergenic |
| AATTCTTTAGAAAAGAAGGA+AGG | 0.620983 | 1_2:-52877483 | Msa0076670:CDS |
| GGAAGTTGGTAGTTTGTTTG+GGG | 0.621129 | 1_2:-52876574 | Msa0076670:exon |
| TTCCTGAGAATGTCCAAGGA+AGG | 0.622863 | 1_2:-52876595 | Msa0076670:CDS |
| CATTTAATCAACCACCCTAG+AGG | 0.626033 | 1_2:-52879797 | Msa0076670:intron |
| CTACAATCTCGCATCAGACA+CGG | 0.627136 | 1_2:-52876713 | Msa0076670:CDS |
| CACGAATAATTACCAAATGG+TGG | 0.631351 | 1_2:+52878621 | None:intergenic |
| GTTGCTGCATGGAGTTTGTG+AGG | 0.638860 | 1_2:-52877124 | Msa0076670:intron |
| GCAGTTGGATCTAAGGAACA+AGG | 0.657729 | 1_2:+52879875 | None:intergenic |
| CAGATTCAGAAATATAGACA+TGG | 0.665470 | 1_2:-52878017 | Msa0076670:CDS |
| AGTTGGTTGTAATACAAGAG+AGG | 0.666386 | 1_2:-52877415 | Msa0076670:CDS |
| ATTTCCTCTGCATTTAAACG+CGG | 0.673606 | 1_2:+52878663 | None:intergenic |
| GCACTAGTTCCATCAAGAGA+CGG | 0.680541 | 1_2:+52878685 | None:intergenic |
| TCACAAATCGAAGATCTCGT+AGG | 0.686909 | 1_2:-52878719 | Msa0076670:CDS |
| AGTGCCGCGTTTAAATGCAG+AGG | 0.687874 | 1_2:-52878667 | Msa0076670:CDS |
| CAAATCGAAGATCTCGTAGG+TGG | 0.687969 | 1_2:-52878716 | Msa0076670:CDS |
| GCATTCCAAGAACAAGAACA+CGG | 0.736442 | 1_2:-52880104 | Msa0076670:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAA+GGG | + | chr1_2:52878254-52878273 | None:intergenic | 0.0% |
| !! | AAAAAAAAAAAAAAAAAAAA+AGG | + | chr1_2:52878254-52878273 | None:intergenic | 0.0% |
| !! | TTGTCAAAAAAAAATAATTA+AGG | + | chr1_2:52876321-52876340 | None:intergenic | 10.0% |
| !! | AAAAAAAACAATATCAATTA+TGG | + | chr1_2:52876657-52876676 | None:intergenic | 10.0% |
| !! | TCATCAAATAAATAAAAATT+TGG | - | chr1_2:52876782-52876801 | Msa0076670:intron | 10.0% |
| !!! | ATTTTTTTATCAATACATAA+TGG | - | chr1_2:52876897-52876916 | Msa0076670:intron | 10.0% |
| !!! | TTTTTTATGTTTATAATGTT+TGG | - | chr1_2:52878269-52878288 | Msa0076670:intron | 10.0% |
| !!! | TTTTTATGTTTATAATGTTT+GGG | - | chr1_2:52878270-52878289 | Msa0076670:intron | 10.0% |
| !!! | CAAAATGTTTTTAATAAAAT+AGG | - | chr1_2:52879360-52879379 | Msa0076670:intron | 10.0% |
| !!! | AATATTCTTTTGCTTAATTA+AGG | + | chr1_2:52876355-52876374 | None:intergenic | 15.0% |
| !!! | CTTTTTATTCTTATTTGTTA+TGG | - | chr1_2:52876874-52876893 | Msa0076670:intron | 15.0% |
| !! | ATAAATACTCATAAACATAA+TGG | + | chr1_2:52877015-52877034 | None:intergenic | 15.0% |
| !! | AAAATTTACATAAAATATGC+AGG | - | chr1_2:52877983-52878002 | Msa0076670:intron | 15.0% |
| !!! | AGCATTAGTTTTATTAATAT+TGG | - | chr1_2:52878479-52878498 | Msa0076670:intron | 15.0% |
| !! | TAAAACTAACATTATATACT+CGG | + | chr1_2:52879620-52879639 | None:intergenic | 15.0% |
| !! | AAAGATAAAGAAAAAGAAAA+GGG | - | chr1_2:52879721-52879740 | Msa0076670:intron | 15.0% |
| !! | AGGAAAATGAAAAAAAAGAA+GGG | + | chr1_2:52876611-52876630 | None:intergenic | 20.0% |
| !! | TAGGAAAATGAAAAAAAAGA+AGG | + | chr1_2:52876612-52876631 | None:intergenic | 20.0% |
| !! | TGCAAATTCAAATTAATAGT+AGG | + | chr1_2:52876631-52876650 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTTGTTGTTGC+AGG | - | chr1_2:52876672-52876691 | Msa0076670:CDS | 20.0% |
| !!! | AATTTTCTTTTCAATTGACA+TGG | + | chr1_2:52876718-52876737 | None:intergenic | 20.0% |
| !! | TGAGATAAATAAGAAACAAA+TGG | - | chr1_2:52876849-52876868 | Msa0076670:intron | 20.0% |
| !!! | TTTTGATACATATATAGACA+TGG | + | chr1_2:52876966-52876985 | None:intergenic | 20.0% |
| !!! | AACAAATCAGAATTTTTAGT+TGG | - | chr1_2:52877074-52877093 | Msa0076670:intron | 20.0% |
| !! | TTTAACTCTATAAGAAATGT+TGG | - | chr1_2:52877099-52877118 | Msa0076670:intron | 20.0% |
| !! | TTAACTCTATAAGAAATGTT+GGG | - | chr1_2:52877100-52877119 | Msa0076670:intron | 20.0% |
| !!! | TTTTTTTTGTCTTAACCATT+TGG | + | chr1_2:52877232-52877251 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAAAGGGAACAA+CGG | + | chr1_2:52878246-52878265 | None:intergenic | 20.0% |
| !!! | TATTAATATTGGTTTTGACT+TGG | - | chr1_2:52878490-52878509 | Msa0076670:intron | 20.0% |
| !!! | AATTAGATTAGTTTAGATCA+AGG | - | chr1_2:52878721-52878740 | Msa0076670:CDS | 20.0% |
| !!! | CTTTTCTAAAGAATTTTCAA+AGG | + | chr1_2:52878886-52878905 | None:intergenic | 20.0% |
| !!! | TGAAAATTCTTTAGAAAAGA+AGG | - | chr1_2:52878887-52878906 | Msa0076670:intron | 20.0% |
| !! | CAAAAGAAAAATATTTCTCA+GGG | + | chr1_2:52879415-52879434 | None:intergenic | 20.0% |
| !! | TCAAAAGAAAAATATTTCTC+AGG | + | chr1_2:52879416-52879435 | None:intergenic | 20.0% |
| !! | AAAACTAACATTATATACTC+GGG | + | chr1_2:52879619-52879638 | None:intergenic | 20.0% |
| !! | CAAAGATAAAGAAAAAGAAA+AGG | - | chr1_2:52879720-52879739 | Msa0076670:intron | 20.0% |
| !!! | TAATAATGGGTTTTATTGTA+TGG | + | chr1_2:52879845-52879864 | None:intergenic | 20.0% |
| !! | ACAATAAAACCCATTATTAT+TGG | - | chr1_2:52879846-52879865 | Msa0076670:exon | 20.0% |
| !! | TGAGAATATCCAATAATAAT+GGG | + | chr1_2:52879858-52879877 | None:intergenic | 20.0% |
| !! | AACTAATTTACAGTGATATT+TGG | + | chr1_2:52879954-52879973 | None:intergenic | 20.0% |
| !! | TATCAACCAATTAAAAATAC+AGG | + | chr1_2:52879986-52880005 | None:intergenic | 20.0% |
| !!! | AACAATAAAATGTTGATTGT+TGG | - | chr1_2:52880015-52880034 | Msa0076670:five_prime_UTR | 20.0% |
| !!! | TTTCTGTTGTTCATTTTTGT+TGG | - | chr1_2:52876927-52876946 | Msa0076670:intron | 25.0% |
| ! | TTGCTCTTGTATCTTAAATT+TGG | - | chr1_2:52877402-52877421 | Msa0076670:CDS | 25.0% |
| ! | TTATATGATTATGTCACATG+AGG | - | chr1_2:52877522-52877541 | Msa0076670:intron | 25.0% |
| ! | CAAAAAAACACCACTATAAA+CGG | + | chr1_2:52877812-52877831 | None:intergenic | 25.0% |
| ! | TTTAAGTGCATTTGAATGAA+GGG | - | chr1_2:52877950-52877969 | Msa0076670:intron | 25.0% |
| ! | AAATAACTACAATTCCTAAC+TGG | - | chr1_2:52878037-52878056 | Msa0076670:CDS | 25.0% |
| !! | TTCTTTCTTTCCTTTTTCTA+TGG | - | chr1_2:52878215-52878234 | Msa0076670:intron | 25.0% |
| ! | TGTGAAATTTACATATGTAG+TGG | - | chr1_2:52878650-52878669 | Msa0076670:CDS | 25.0% |
| ! | TGAAAATATAATCTGTATGC+TGG | - | chr1_2:52878744-52878763 | Msa0076670:intron | 25.0% |
| !! | GATTATATTTTCATGTGATG+TGG | - | chr1_2:52878798-52878817 | Msa0076670:intron | 25.0% |
| !! | ATCTATCTGTTTTATCTGTT+TGG | - | chr1_2:52878841-52878860 | Msa0076670:intron | 25.0% |
| !! | AATTCTTTAGAAAAGAAGGA+AGG | - | chr1_2:52878891-52878910 | Msa0076670:intron | 25.0% |
| !! | GTCGTTTAAAATATGTTTCT+CGG | - | chr1_2:52879118-52879137 | Msa0076670:intron | 25.0% |
| !! | ATATTTTCAGCATTAACAGA+GGG | + | chr1_2:52879296-52879315 | None:intergenic | 25.0% |
| !!! | TTAAAGCATTTTATGCTGTT+TGG | + | chr1_2:52879475-52879494 | None:intergenic | 25.0% |
| ! | CTGAGAATATCCAATAATAA+TGG | + | chr1_2:52879859-52879878 | None:intergenic | 25.0% |
| ! | AACCAATTAAAAATACAGGT+TGG | + | chr1_2:52879982-52880001 | None:intergenic | 25.0% |
| !!! | AACATTTTATTGTTGACTGA+TGG | + | chr1_2:52880009-52880028 | None:intergenic | 25.0% |
| !! | CTTTATTTCATAAGCTACAA+CGG | + | chr1_2:52880047-52880066 | None:intergenic | 25.0% |
| AGTCAAGATAAACAAACTAG+TGG | + | chr1_2:52876404-52876423 | None:intergenic | 30.0% | |
| AAACGAAATGAGATTGGATT+TGG | + | chr1_2:52876475-52876494 | None:intergenic | 30.0% | |
| TTAAATGAGAAGAAAGGAGA+AGG | + | chr1_2:52876564-52876583 | None:intergenic | 30.0% | |
| GGTTGATTAAATGAGAAGAA+AGG | + | chr1_2:52876570-52876589 | None:intergenic | 30.0% | |
| ! | CTTTTCAATTGACATGGAAT+TGG | + | chr1_2:52876712-52876731 | None:intergenic | 30.0% |
| AAATGTTGGGTGTTTAATCA+AGG | - | chr1_2:52877113-52877132 | Msa0076670:intron | 30.0% | |
| AATGTTGGGTGTTTAATCAA+GGG | - | chr1_2:52877114-52877133 | Msa0076670:intron | 30.0% | |
| TTAGAGAATGGAACTTGAAT+AGG | + | chr1_2:52877315-52877334 | None:intergenic | 30.0% | |
| TAAGTGAGTTCATTAGAGAA+TGG | + | chr1_2:52877327-52877346 | None:intergenic | 30.0% | |
| CTCTTGTATCTTAAATTTGG+AGG | - | chr1_2:52877405-52877424 | Msa0076670:CDS | 30.0% | |
| GCTTGTATTGTATGAATTCA+CGG | - | chr1_2:52877585-52877604 | Msa0076670:intron | 30.0% | |
| TTAAATGCAGAGGAAATTAG+AGG | - | chr1_2:52877717-52877736 | Msa0076670:intron | 30.0% | |
| TCACACGAATAATTACCAAA+TGG | + | chr1_2:52877759-52877778 | None:intergenic | 30.0% | |
| !!! | CGTTTATAGTGGTGTTTTTT+TGG | - | chr1_2:52877810-52877829 | Msa0076670:intron | 30.0% |
| GTTTAAGTGCATTTGAATGA+AGG | - | chr1_2:52877949-52877968 | Msa0076670:intron | 30.0% | |
| TTAAGTGCATTTGAATGAAG+GGG | - | chr1_2:52877951-52877970 | Msa0076670:intron | 30.0% | |
| ! | TTTAAAGTTGAAAGCCAGTT+AGG | + | chr1_2:52878054-52878073 | None:intergenic | 30.0% |
| TTTCCTTTCTTAGAGTACAA+TGG | - | chr1_2:52878115-52878134 | Msa0076670:intron | 30.0% | |
| AAAGAAAGAATAAAGCCACT+AGG | + | chr1_2:52878205-52878224 | None:intergenic | 30.0% | |
| ! | TCTTTCCTTTTTCTATGGAT+TGG | - | chr1_2:52878220-52878239 | Msa0076670:intron | 30.0% |
| ! | AATGTTTGGGTTCATAAAAC+AGG | - | chr1_2:52878283-52878302 | Msa0076670:intron | 30.0% |
| TTAGTCAAGGAAAATGTTGA+AGG | + | chr1_2:52878322-52878341 | None:intergenic | 30.0% | |
| ! | AACATTTTCCTTGACTAATG+TGG | - | chr1_2:52878324-52878343 | Msa0076670:intron | 30.0% |
| CAGATTCAGAAATATAGACA+TGG | - | chr1_2:52878357-52878376 | Msa0076670:intron | 30.0% | |
| AAATATAGACATGGACAAAG+AGG | - | chr1_2:52878366-52878385 | Msa0076670:intron | 30.0% | |
| ! | CTTAAACAGTGGAAATTTTG+AGG | + | chr1_2:52878424-52878443 | None:intergenic | 30.0% |
| CAAATTGCTTTCTTAAACAG+TGG | + | chr1_2:52878435-52878454 | None:intergenic | 30.0% | |
| CTTGTTGAATCCAATTTCAA+GGG | + | chr1_2:52878461-52878480 | None:intergenic | 30.0% | |
| !! | TCTTTAGCAGTTTGTTATGA+TGG | - | chr1_2:52878553-52878572 | Msa0076670:intron | 30.0% |
| !! | CTTTAGCAGTTTGTTATGAT+GGG | - | chr1_2:52878554-52878573 | Msa0076670:intron | 30.0% |
| AGATCTTGTTAGTGTTATCA+TGG | - | chr1_2:52878623-52878642 | Msa0076670:intron | 30.0% | |
| AAACATAGCTTCACATGATT+AGG | + | chr1_2:52878689-52878708 | None:intergenic | 30.0% | |
| ! | ATCTGTTTTATCTGTTTGGT+AGG | - | chr1_2:52878845-52878864 | Msa0076670:intron | 30.0% |
| ! | TCTCTTTTTGAACTCATTGA+GGG | - | chr1_2:52878996-52879015 | Msa0076670:intron | 30.0% |
| !! | CATATTTTAAACGACAGCAA+AGG | + | chr1_2:52879113-52879132 | None:intergenic | 30.0% |
| ! | TATTTTCAGCATTAACAGAG+GGG | + | chr1_2:52879295-52879314 | None:intergenic | 30.0% |
| ! | CATATTTTCAGCATTAACAG+AGG | + | chr1_2:52879297-52879316 | None:intergenic | 30.0% |
| !! | TGCCAACCTGTATTTTTAAT+TGG | - | chr1_2:52879977-52879996 | Msa0076670:five_prime_UTR | 30.0% |
| ! | TGTGTATATCTAAAACGAGA+TGG | - | chr1_2:52880129-52880148 | Msa0076670:five_prime_UTR | 30.0% |
| !!! | AGAGGTATTTTTTGGTCTCA+GGG | + | chr1_2:52876380-52876399 | None:intergenic | 35.0% |
| !!! | AAGAGGTATTTTTTGGTCTC+AGG | + | chr1_2:52876381-52876400 | None:intergenic | 35.0% |
| !!! | CTAGTGGAAGAGGTATTTTT+TGG | + | chr1_2:52876388-52876407 | None:intergenic | 35.0% |
| GATAAACAAACTAGTGGAAG+AGG | + | chr1_2:52876398-52876417 | None:intergenic | 35.0% | |
| GGATTGAAACGAAATGAGAT+TGG | + | chr1_2:52876481-52876500 | None:intergenic | 35.0% | |
| !! | ATGATGATTGATGATGCAGT+TGG | + | chr1_2:52876517-52876536 | None:intergenic | 35.0% |
| AACTGCATCATCAATCATCA+TGG | - | chr1_2:52876516-52876535 | Msa0076670:three_prime_UTR | 35.0% | |
| !!! | TTTTTTGTTGTTGCAGGTGA+TGG | - | chr1_2:52876678-52876697 | Msa0076670:CDS | 35.0% |
| TCATAACTGCGTCTATGAAA+TGG | - | chr1_2:52877442-52877461 | Msa0076670:CDS | 35.0% | |
| ! | ATTTTCAGTGACATAGTGCA+AGG | - | chr1_2:52877472-52877491 | Msa0076670:CDS | 35.0% |
| ! | GTTGTCTAGTCACTTCTTTT+TGG | - | chr1_2:52877494-52877513 | Msa0076670:CDS | 35.0% |
| ATTTCCTCTGCATTTAAACG+CGG | + | chr1_2:52877714-52877733 | None:intergenic | 35.0% | |
| GAATAATTACCAAATGGTGG+TGG | + | chr1_2:52877753-52877772 | None:intergenic | 35.0% | |
| CACGAATAATTACCAAATGG+TGG | + | chr1_2:52877756-52877775 | None:intergenic | 35.0% | |
| TTGCATTTAGGCAACAAGAA+TGG | - | chr1_2:52877845-52877864 | Msa0076670:intron | 35.0% | |
| TGCATTTAGGCAACAAGAAT+GGG | - | chr1_2:52877846-52877865 | Msa0076670:intron | 35.0% | |
| AACAAGAATGGGATTCTTCA+TGG | - | chr1_2:52877857-52877876 | Msa0076670:intron | 35.0% | |
| ACAAGAATGGGATTCTTCAT+GGG | - | chr1_2:52877858-52877877 | Msa0076670:intron | 35.0% | |
| TTTAAATAAGCTCTCGTGCA+TGG | + | chr1_2:52877890-52877909 | None:intergenic | 35.0% | |
| AGAATAAAGCCACTAGGATT+GGG | + | chr1_2:52878199-52878218 | None:intergenic | 35.0% | |
| AAGAATAAAGCCACTAGGAT+TGG | + | chr1_2:52878200-52878219 | None:intergenic | 35.0% | |
| ! | ATTTTCCTTGACTAATGTGG+AGG | - | chr1_2:52878327-52878346 | Msa0076670:intron | 35.0% |
| CAATTTGATGCCCTTGAAAT+TGG | - | chr1_2:52878448-52878467 | Msa0076670:intron | 35.0% | |
| ! | GCTTGTTGAATCCAATTTCA+AGG | + | chr1_2:52878462-52878481 | None:intergenic | 35.0% |
| ACAAACTGCTAAAGAAACGA+GGG | + | chr1_2:52878548-52878567 | None:intergenic | 35.0% | |
| AACAAACTGCTAAAGAAACG+AGG | + | chr1_2:52878549-52878568 | None:intergenic | 35.0% | |
| ! | GATGGTCCTAATGTTGTTTA+GGG | - | chr1_2:52878576-52878595 | Msa0076670:intron | 35.0% |
| ! | TACATATGTAGTGGTTTGTG+TGG | - | chr1_2:52878659-52878678 | Msa0076670:CDS | 35.0% |
| ! | ACATATGTAGTGGTTTGTGT+GGG | - | chr1_2:52878660-52878679 | Msa0076670:CDS | 35.0% |
| ! | TATTTTCATGTGATGTGGTG+CGG | - | chr1_2:52878803-52878822 | Msa0076670:intron | 35.0% |
| AGTTGGTTGTAATACAAGAG+AGG | - | chr1_2:52878959-52878978 | Msa0076670:intron | 35.0% | |
| ! | CTCTCTTTTTGAACTCATTG+AGG | - | chr1_2:52878995-52879014 | Msa0076670:intron | 35.0% |
| GCGGCGTAATAATAATAATC+AGG | + | chr1_2:52879036-52879055 | None:intergenic | 35.0% | |
| ! | ATTTTCAGCATTAACAGAGG+GGG | + | chr1_2:52879294-52879313 | None:intergenic | 35.0% |
| ACACATGATGAAAAGCTTTC+AGG | + | chr1_2:52879388-52879407 | None:intergenic | 35.0% | |
| ! | TCAGATGTTGAAAGCATGAA+GGG | + | chr1_2:52879572-52879591 | None:intergenic | 35.0% |
| ! | TTCAGATGTTGAAAGCATGA+AGG | + | chr1_2:52879573-52879592 | None:intergenic | 35.0% |
| !! | AAGGAAGTTGGTAGTTTGTT+TGG | - | chr1_2:52879798-52879817 | Msa0076670:CDS | 35.0% |
| !! | AGGAAGTTGGTAGTTTGTTT+GGG | - | chr1_2:52879799-52879818 | Msa0076670:CDS | 35.0% |
| !!! | GGGTTTTATTGTATGGACAA+TGG | + | chr1_2:52879838-52879857 | None:intergenic | 35.0% |
| GCATTCCAAGAACAAGAACA+CGG | - | chr1_2:52876270-52876289 | Msa0076670:three_prime_UTR | 40.0% | |
| ! | TGATGATGCAGTTGGATCTA+AGG | + | chr1_2:52876509-52876528 | None:intergenic | 40.0% |
| CATTTAATCAACCACCCTAG+AGG | - | chr1_2:52876577-52876596 | Msa0076670:exon | 40.0% | |
| GAAGGGAAAAAGAACCTCTA+GGG | + | chr1_2:52876594-52876613 | None:intergenic | 40.0% | |
| AGAAGGGAAAAAGAACCTCT+AGG | + | chr1_2:52876595-52876614 | None:intergenic | 40.0% | |
| GAGTTCCTTGAAAGCTTTAC+CGG | - | chr1_2:52876738-52876757 | Msa0076670:intron | 40.0% | |
| ACAAGTTACACACACCTTTC+CGG | + | chr1_2:52876760-52876779 | None:intergenic | 40.0% | |
| TGGGTGTTTAATCAAGGGAT+TGG | - | chr1_2:52877119-52877138 | Msa0076670:intron | 40.0% | |
| TGAGCTCCACAAACAATTCT+TGG | - | chr1_2:52877156-52877175 | Msa0076670:CDS | 40.0% | |
| ACATGGCCAAGAATTGTTTG+TGG | + | chr1_2:52877165-52877184 | None:intergenic | 40.0% | |
| AACAATTCTTGGCCATGTCA+CGG | - | chr1_2:52877167-52877186 | Msa0076670:CDS | 40.0% | |
| ! | TGTCTTAACCATTTGGTTCC+CGG | + | chr1_2:52877225-52877244 | None:intergenic | 40.0% |
| AGTCTAATATTACCCGTCTC+AGG | - | chr1_2:52877632-52877651 | Msa0076670:intron | 40.0% | |
| TCACAAATCGAAGATCTCGT+AGG | - | chr1_2:52877655-52877674 | Msa0076670:intron | 40.0% | |
| GTTAAATGACCGTCTCTTGA+TGG | - | chr1_2:52877680-52877699 | Msa0076670:intron | 40.0% | |
| TGAATTCACGCCGTTTATAG+TGG | - | chr1_2:52877799-52877818 | Msa0076670:intron | 40.0% | |
| AGGACATTGTGAAAGTTGAC+TGG | - | chr1_2:52878003-52878022 | Msa0076670:intron | 40.0% | |
| ! | CGACCATTGTACTCTAAGAA+AGG | + | chr1_2:52878121-52878140 | None:intergenic | 40.0% |
| AACGGCCAATCCATAGAAAA+AGG | + | chr1_2:52878228-52878247 | None:intergenic | 40.0% | |
| GTCAAGGAAAATGTTGAAGG+TGG | + | chr1_2:52878319-52878338 | None:intergenic | 40.0% | |
| !! | AGCAGTTTGTTATGATGGGA+TGG | - | chr1_2:52878558-52878577 | Msa0076670:intron | 40.0% |
| ! | GGATGGTCCTAATGTTGTTT+AGG | - | chr1_2:52878575-52878594 | Msa0076670:intron | 40.0% |
| ! | TCCTAATGTTGTTTAGGGTG+TGG | - | chr1_2:52878581-52878600 | Msa0076670:intron | 40.0% |
| AAGCTATGTTTGCATGTGTG+AGG | - | chr1_2:52878698-52878717 | Msa0076670:CDS | 40.0% | |
| TCACATTGATGCTGACAAGA+TGG | - | chr1_2:52878914-52878933 | Msa0076670:intron | 40.0% | |
| TGAGTTCAAAAAGAGAGCTG+CGG | + | chr1_2:52878992-52879011 | None:intergenic | 40.0% | |
| TGAACTCATTGAGGGTTATG+AGG | - | chr1_2:52879004-52879023 | Msa0076670:intron | 40.0% | |
| TGTCCTGTTACACGGAAAAT+GGG | - | chr1_2:52879058-52879077 | Msa0076670:intron | 40.0% | |
| TATGTTTCTCGGCGTTTACA+TGG | - | chr1_2:52879129-52879148 | Msa0076670:intron | 40.0% | |
| ATGGAACCTTTATTACTCCC+AGG | - | chr1_2:52879148-52879167 | Msa0076670:intron | 40.0% | |
| GACATTCCTGGGAGTAATAA+AGG | + | chr1_2:52879157-52879176 | None:intergenic | 40.0% | |
| ATTACTCCCAGGAATGTCTA+CGG | - | chr1_2:52879159-52879178 | Msa0076670:intron | 40.0% | |
| TGCAGCAACAATCTATGGAA+AGG | + | chr1_2:52879239-52879258 | None:intergenic | 40.0% | |
| TTCCATAGATTGTTGCTGCA+TGG | - | chr1_2:52879239-52879258 | Msa0076670:intron | 40.0% | |
| ! | CAGATGTTGAAAGCATGAAG+GGG | + | chr1_2:52879571-52879590 | None:intergenic | 40.0% |
| AATGGGACAGAGTGATCTTT+GGG | + | chr1_2:52879760-52879779 | None:intergenic | 40.0% | |
| AAATGGGACAGAGTGATCTT+TGG | + | chr1_2:52879761-52879780 | None:intergenic | 40.0% | |
| CTTGGACATTCTCAGGAAAT+GGG | + | chr1_2:52879777-52879796 | None:intergenic | 40.0% | |
| AAACTACCAACTTCCTTCCT+TGG | + | chr1_2:52879795-52879814 | None:intergenic | 40.0% | |
| !! | GGAAGTTGGTAGTTTGTTTG+GGG | - | chr1_2:52879800-52879819 | Msa0076670:CDS | 40.0% |
| ATTGTCCATCCCTGTACAAA+GGG | + | chr1_2:52879900-52879919 | None:intergenic | 40.0% | |
| TGTTCTTGGAATGCAAGTCC+TGG | + | chr1_2:52876264-52876283 | None:intergenic | 45.0% | |
| GATGACCGTGTTCTTGTTCT+TGG | + | chr1_2:52876278-52876297 | None:intergenic | 45.0% | |
| GCAGTTGGATCTAAGGAACA+AGG | + | chr1_2:52876502-52876521 | None:intergenic | 45.0% | |
| CCTTTCCGGTAAAGCTTTCA+AGG | + | chr1_2:52876746-52876765 | None:intergenic | 45.0% | |
| CCTTGAAAGCTTTACCGGAA+AGG | - | chr1_2:52876743-52876762 | Msa0076670:intron | 45.0% | |
| !! | ATAAAGGTGCCCTGGTAATC+AGG | + | chr1_2:52877200-52877219 | None:intergenic | 45.0% |
| ! | CATTTGGTTCCCGGGTATAA+AGG | + | chr1_2:52877216-52877235 | None:intergenic | 45.0% |
| CTTTATACCCGGGAACCAAA+TGG | - | chr1_2:52877214-52877233 | Msa0076670:intron | 45.0% | |
| ! | GTCTTAACCATTTGGTTCCC+GGG | + | chr1_2:52877224-52877243 | None:intergenic | 45.0% |
| ! | TTCGATTTGTGACCTGAGAC+GGG | + | chr1_2:52877647-52877666 | None:intergenic | 45.0% |
| ! | CTTCGATTTGTGACCTGAGA+CGG | + | chr1_2:52877648-52877667 | None:intergenic | 45.0% |
| CAAATCGAAGATCTCGTAGG+TGG | - | chr1_2:52877658-52877677 | Msa0076670:intron | 45.0% | |
| GCACTAGTTCCATCAAGAGA+CGG | + | chr1_2:52877692-52877711 | None:intergenic | 45.0% | |
| TTGTTTGCTCCACCACCATT+TGG | - | chr1_2:52877741-52877760 | Msa0076670:intron | 45.0% | |
| CTGAGACTGCAGTTGCATTT+AGG | - | chr1_2:52877833-52877852 | Msa0076670:intron | 45.0% | |
| AGAGTACAATGGTCGCATTG+AGG | - | chr1_2:52878126-52878145 | Msa0076670:intron | 45.0% | |
| GGAAGTTTGCATGAGGTCAT+AGG | + | chr1_2:52878158-52878177 | None:intergenic | 45.0% | |
| !! | TAGGATTGGGCTAGTGGTTA+GGG | + | chr1_2:52878186-52878205 | None:intergenic | 45.0% |
| CTTGACTAATGTGGAGGAGT+GGG | - | chr1_2:52878333-52878352 | Msa0076670:intron | 45.0% | |
| GCCACACCCTAAACAACATT+AGG | + | chr1_2:52878585-52878604 | None:intergenic | 45.0% | |
| ! | GACAAGATGGCAGTGTTGAA+TGG | - | chr1_2:52878927-52878946 | Msa0076670:intron | 45.0% |
| ! | AGATGGCAGTGTTGAATGGT+TGG | - | chr1_2:52878931-52878950 | Msa0076670:intron | 45.0% |
| TTGAATGGTTGGCGTAGAGT+TGG | - | chr1_2:52878942-52878961 | Msa0076670:intron | 45.0% | |
| CTGTCCTGTTACACGGAAAA+TGG | - | chr1_2:52879057-52879076 | Msa0076670:intron | 45.0% | |
| ! | TTGCCCATTTTCCGTGTAAC+AGG | + | chr1_2:52879064-52879083 | None:intergenic | 45.0% |
| TTACTCCCAGGAATGTCTAC+GGG | - | chr1_2:52879160-52879179 | Msa0076670:intron | 45.0% | |
| GGCTTTCATAACCGAAAGCA+CGG | - | chr1_2:52879181-52879200 | Msa0076670:intron | 45.0% | |
| ! | TTCATAACCGAAAGCACGGA+TGG | - | chr1_2:52879185-52879204 | Msa0076670:intron | 45.0% |
| CTCCATGCAGCAACAATCTA+TGG | + | chr1_2:52879244-52879263 | None:intergenic | 45.0% | |
| CTAAACAGTCTCTGAGTTCG+AGG | + | chr1_2:52879445-52879464 | None:intergenic | 45.0% | |
| CTACAATCTCGCATCAGACA+CGG | - | chr1_2:52879661-52879680 | Msa0076670:CDS | 45.0% | |
| ! | GACACGGTGTCTGATTTGAA+TGG | - | chr1_2:52879677-52879696 | Msa0076670:CDS | 45.0% |
| CCTTGGACATTCTCAGGAAA+TGG | + | chr1_2:52879778-52879797 | None:intergenic | 45.0% | |
| CCATTTCCTGAGAATGTCCA+AGG | - | chr1_2:52879775-52879794 | Msa0076670:intron | 45.0% | |
| TTCCTGAGAATGTCCAAGGA+AGG | - | chr1_2:52879779-52879798 | Msa0076670:intron | 45.0% | |
| TTCCTTCCTTGGACATTCTC+AGG | + | chr1_2:52879784-52879803 | None:intergenic | 45.0% | |
| GAATGTCCAAGGAAGGAAGT+TGG | - | chr1_2:52879786-52879805 | Msa0076670:intron | 45.0% | |
| CATTGTCCATCCCTGTACAA+AGG | + | chr1_2:52879901-52879920 | None:intergenic | 45.0% | |
| ! | GGGAAAAAGAACCTCTAGGG+TGG | + | chr1_2:52876591-52876610 | None:intergenic | 50.0% |
| AATTCTTGGCCATGTCACGG+CGG | - | chr1_2:52877170-52877189 | Msa0076670:CDS | 50.0% | |
| ! | TACCAGGGCACCTTTATACC+CGG | - | chr1_2:52877203-52877222 | Msa0076670:CDS | 50.0% |
| AGTGCCGCGTTTAAATGCAG+AGG | - | chr1_2:52877707-52877726 | Msa0076670:intron | 50.0% | |
| !! | AGGATTGGGCTAGTGGTTAG+GGG | + | chr1_2:52878185-52878204 | None:intergenic | 50.0% |
| !! | CTAGGATTGGGCTAGTGGTT+AGG | + | chr1_2:52878187-52878206 | None:intergenic | 50.0% |
| AACCACTAGCCCAATCCTAG+TGG | - | chr1_2:52878187-52878206 | Msa0076670:intron | 50.0% | |
| CCACTCCTCCACATTAGTCA+AGG | + | chr1_2:52878335-52878354 | None:intergenic | 50.0% | |
| CCTTGACTAATGTGGAGGAG+TGG | - | chr1_2:52878332-52878351 | Msa0076670:intron | 50.0% | |
| TTCCGTGTAACAGGACAGAG+CGG | + | chr1_2:52879055-52879074 | None:intergenic | 50.0% | |
| GAAAGCCCGTAGACATTCCT+GGG | + | chr1_2:52879168-52879187 | None:intergenic | 50.0% | |
| TGAAAGCCCGTAGACATTCC+TGG | + | chr1_2:52879169-52879188 | None:intergenic | 50.0% | |
| AACGTCTCCATCCGTGCTTT+CGG | + | chr1_2:52879195-52879214 | None:intergenic | 50.0% | |
| GTTGCTGCATGGAGTTTGTG+AGG | - | chr1_2:52879250-52879269 | Msa0076670:intron | 50.0% | |
| ! | AGAGTGATCTTTGGGAGCTC+GGG | + | chr1_2:52879752-52879771 | None:intergenic | 50.0% |
| ! | CAGAGTGATCTTTGGGAGCT+CGG | + | chr1_2:52879753-52879772 | None:intergenic | 50.0% |
| TCAAGTCCCTCCCTTTGTAC+AGG | - | chr1_2:52879887-52879906 | Msa0076670:five_prime_UTR | 50.0% | |
| CAAGTCCCTCCCTTTGTACA+GGG | - | chr1_2:52879888-52879907 | Msa0076670:five_prime_UTR | 50.0% | |
| TCCATCCCTGTACAAAGGGA+GGG | + | chr1_2:52879896-52879915 | None:intergenic | 50.0% | |
| TGGAATGCAAGTCCTGGACC+CGG | + | chr1_2:52876258-52876277 | None:intergenic | 55.0% | |
| GGCGGAACTCCTGATTACCA+GGG | - | chr1_2:52877188-52877207 | Msa0076670:CDS | 55.0% | |
| ! | ACCAGGGCACCTTTATACCC+GGG | - | chr1_2:52877204-52877223 | Msa0076670:CDS | 55.0% |
| GGGCTTGGGAAGTTTGCATG+AGG | + | chr1_2:52878165-52878184 | None:intergenic | 55.0% | |
| ! | AGCCACTAGGATTGGGCTAG+TGG | + | chr1_2:52878192-52878211 | None:intergenic | 55.0% |
| TCCCTCCCTTTGTACAGGGA+TGG | - | chr1_2:52879892-52879911 | Msa0076670:five_prime_UTR | 55.0% | |
| GTCCATCCCTGTACAAAGGG+AGG | + | chr1_2:52879897-52879916 | None:intergenic | 55.0% | |
| TCAGGAGTTCCGCCGTGACA+TGG | + | chr1_2:52877182-52877201 | None:intergenic | 60.0% | |
| CGGCGGAACTCCTGATTACC+AGG | - | chr1_2:52877187-52877206 | Msa0076670:CDS | 60.0% | |
| !! | TCCCGGGTATAAAGGTGCCC+TGG | + | chr1_2:52877208-52877227 | None:intergenic | 60.0% |
| ! | GGGCTAGTGGTTAGGGGCTT+GGG | + | chr1_2:52878179-52878198 | None:intergenic | 60.0% |
| !! | TGGGCTAGTGGTTAGGGGCT+TGG | + | chr1_2:52878180-52878199 | None:intergenic | 60.0% |
| CGCCGCTCTGTCCTGTTACA+CGG | - | chr1_2:52879050-52879069 | Msa0076670:intron | 60.0% | |
| !!! | GCGGGTGACGGACCGGGTCC+AGG | - | chr1_2:52876243-52876262 | Msa0076670:three_prime_UTR | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 52876243 | 52880153 | 52876243 | ID=Msa0076670;Name=Msa0076670 |
| chr1_2 | mRNA | 52876243 | 52880153 | 52876243 | ID=Msa0076670-mRNA-1;Parent=Msa0076670;Name=Msa0076670-mRNA-1;_AED=0.11;_eAED=0.11;_QI=261|1|1|1|0.85|0.75|8|342|246 |
| chr1_2 | exon | 52876243 | 52876737 | 52876243 | ID=Msa0076670-mRNA-1:exon:16321;Parent=Msa0076670-mRNA-1 |
| chr1_2 | exon | 52877125 | 52877226 | 52877125 | ID=Msa0076670-mRNA-1:exon:16320;Parent=Msa0076670-mRNA-1 |
| chr1_2 | exon | 52877371 | 52877529 | 52877371 | ID=Msa0076670-mRNA-1:exon:16319;Parent=Msa0076670-mRNA-1 |
| chr1_2 | exon | 52878009 | 52878091 | 52878009 | ID=Msa0076670-mRNA-1:exon:16318;Parent=Msa0076670-mRNA-1 |
| chr1_2 | exon | 52878634 | 52878742 | 52878634 | ID=Msa0076670-mRNA-1:exon:16317;Parent=Msa0076670-mRNA-1 |
| chr1_2 | exon | 52879632 | 52879702 | 52879632 | ID=Msa0076670-mRNA-1:exon:16316;Parent=Msa0076670-mRNA-1 |
| chr1_2 | exon | 52879798 | 52880055 | 52879798 | ID=Msa0076670-mRNA-1:exon:16315;Parent=Msa0076670-mRNA-1 |
| chr1_2 | exon | 52880087 | 52880153 | 52880087 | ID=Msa0076670-mRNA-1:exon:16314;Parent=Msa0076670-mRNA-1 |
| chr1_2 | five_prime_UTR | 52880087 | 52880153 | 52880087 | ID=Msa0076670-mRNA-1:five_prime_utr;Parent=Msa0076670-mRNA-1 |
| chr1_2 | five_prime_UTR | 52879862 | 52880055 | 52879862 | ID=Msa0076670-mRNA-1:five_prime_utr;Parent=Msa0076670-mRNA-1 |
| chr1_2 | CDS | 52879798 | 52879861 | 52879798 | ID=Msa0076670-mRNA-1:cds;Parent=Msa0076670-mRNA-1 |
| chr1_2 | CDS | 52879632 | 52879702 | 52879632 | ID=Msa0076670-mRNA-1:cds;Parent=Msa0076670-mRNA-1 |
| chr1_2 | CDS | 52878634 | 52878742 | 52878634 | ID=Msa0076670-mRNA-1:cds;Parent=Msa0076670-mRNA-1 |
| chr1_2 | CDS | 52878009 | 52878091 | 52878009 | ID=Msa0076670-mRNA-1:cds;Parent=Msa0076670-mRNA-1 |
| chr1_2 | CDS | 52877371 | 52877529 | 52877371 | ID=Msa0076670-mRNA-1:cds;Parent=Msa0076670-mRNA-1 |
| chr1_2 | CDS | 52877125 | 52877226 | 52877125 | ID=Msa0076670-mRNA-1:cds;Parent=Msa0076670-mRNA-1 |
| chr1_2 | CDS | 52876585 | 52876737 | 52876585 | ID=Msa0076670-mRNA-1:cds;Parent=Msa0076670-mRNA-1 |
| chr1_2 | three_prime_UTR | 52876243 | 52876584 | 52876243 | ID=Msa0076670-mRNA-1:three_prime_utr;Parent=Msa0076670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
