AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0319130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0319130 MtrunA17_Chr2g0293381 98.316 297 5 0 1 297 1 297 0.0 592
Msa0319130 MtrunA17_Chr8g0384671 75.104 241 54 2 1 239 1 237 8.90e-128 365
Msa0319130 MtrunA17_Chr4g0054131 44.664 253 124 5 1 239 1 251 1.14e-63 202
Msa0319130 MtrunA17_Chr5g0401061 48.548 241 111 6 1 236 1 233 1.75e-63 202
Msa0319130 MtrunA17_Chr8g0383821 64.000 125 45 0 1 125 1 125 5.03e-52 167
Msa0319130 MtrunA17_Chr1g0195251 64.463 121 40 2 125 245 295 412 7.29e-41 147
Msa0319130 MtrunA17_Chr8g0342871 33.446 296 154 7 1 282 1 267 2.95e-32 120
Msa0319130 MtrunA17_Chr2g0329921 35.349 215 108 4 1 190 1 209 1.46e-28 111
Msa0319130 MtrunA17_Chr1g0166681 67.123 73 23 1 1 73 1 72 5.08e-27 104
Msa0319130 MtrunA17_Chr1g0195261 72.000 50 14 0 1 50 1 50 3.35e-20 82.0
Msa0319130 MtrunA17_Chr2g0293401 61.538 65 25 0 59 123 1 65 9.42e-19 78.6
Msa0319130 MtrunA17_Chr8g0383841 68.605 86 18 1 187 263 2 87 1.47e-15 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0319130 AT1G49950.3 57.895 247 91 6 1 241 1 240 1.86e-87 263
Msa0319130 AT1G49950.1 57.895 247 91 6 1 241 1 240 1.86e-87 263
Msa0319130 AT1G49950.2 57.895 247 91 6 1 241 1 240 1.86e-87 263
Msa0319130 AT3G49850.1 42.735 234 128 3 1 232 1 230 8.71e-53 174
Msa0319130 AT3G49850.2 42.735 234 128 3 1 232 1 230 8.71e-53 174
Msa0319130 AT5G67580.2 43.210 243 131 5 1 239 1 240 2.24e-52 174
Msa0319130 AT5G67580.1 43.210 243 131 5 1 239 1 240 2.24e-52 174
Msa0319130 AT1G72740.2 30.796 289 173 3 1 289 1 262 1.95e-32 121
Msa0319130 AT1G72740.1 30.508 295 172 4 1 289 1 268 3.94e-30 115
Msa0319130 AT1G17520.4 38.342 193 112 2 1 187 1 192 2.40e-28 110
Msa0319130 AT1G17520.1 39.572 187 106 2 1 181 1 186 1.94e-27 108
Msa0319130 AT1G17520.3 38.144 194 112 3 1 187 1 193 7.03e-27 107
Msa0319130 AT1G17520.2 39.362 188 106 3 1 181 1 187 5.26e-26 104
Msa0319130 AT1G54260.1 45.205 73 40 0 120 192 2 74 3.24e-12 64.7

Find 96 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCCTAAATTCACATTAAA+TGG 0.080322 2_4:-18462665 None:intergenic
GGATTACATATGATATTATT+TGG 0.094051 2_4:+18467045 Msa0319130:three_prime_UTR
AGAGATATGCCGCAAATTTC+TGG 0.156146 2_4:+18463716 Msa0319130:CDS
AAGCCAAGATTTACCGTCTT+TGG 0.203558 2_4:-18466963 None:intergenic
AACCCATTTAATGTGAATTT+AGG 0.205428 2_4:+18462662 Msa0319130:five_prime_UTR
ACACCCATCAACATTATTAT+TGG 0.217687 2_4:+18466675 Msa0319130:CDS
CTATAACTTAATACATTAAT+AGG 0.258059 2_4:+18467003 Msa0319130:three_prime_UTR
TAGATATAGCTTCCATTATA+AGG 0.267054 2_4:-18464450 None:intergenic
TCATCATCACTTAGAGAAAA+AGG 0.267733 2_4:-18463662 None:intergenic
TATGGAAGAGCAAATAAAAT+TGG 0.273546 2_4:-18467073 None:intergenic
GGACATGTAGAAGATTCTTT+TGG 0.291674 2_4:+18467024 Msa0319130:three_prime_UTR
GTATTCTGTAGGACCATTAC+TGG 0.323222 2_4:+18465579 Msa0319130:intron
AATGAAAAGGGTGCATTATC+AGG 0.328121 2_4:+18463604 Msa0319130:CDS
GATTACATATGATATTATTT+GGG 0.336628 2_4:+18467046 Msa0319130:three_prime_UTR
AGCCAAGATTTACCGTCTTT+GGG 0.343837 2_4:-18466962 None:intergenic
TCAAGCATGGGGTGGGTAAA+TGG 0.345523 2_4:+18463342 Msa0319130:CDS
CCTTCCAATAATAATGTTGA+TGG 0.370851 2_4:-18466679 None:intergenic
TATAAAACATGGTTAAATTC+AGG 0.375074 2_4:-18463383 None:intergenic
TTATTGGAAGGGAGGCAAAA+AGG 0.396790 2_4:+18466691 Msa0319130:CDS
TCGGTCAAATGTTGATCTAA+AGG 0.406182 2_4:+18463409 Msa0319130:CDS
AATACACGAGGACAACTCTA+TGG 0.413485 2_4:+18463631 Msa0319130:CDS
GTCCTAAATTCACATTAAAT+GGG 0.419607 2_4:-18462664 None:intergenic
GGGTTGTTGGATAGGATAAA+TGG 0.426577 2_4:+18463525 Msa0319130:intron
TTCAGGTGAAGCGCAGGTAT+AGG 0.433823 2_4:+18466617 Msa0319130:intron
TTCTAATTCTAAATCGATCT+CGG 0.439248 2_4:-18466758 None:intergenic
CACCCAAAGACGGTAAATCT+TGG 0.442023 2_4:+18466960 Msa0319130:exon
CTCTTCAGCCTCCGCCATGA+GGG 0.446885 2_4:-18466848 None:intergenic
TTCTAAATCGATCTCGGACT+TGG 0.447008 2_4:-18466752 None:intergenic
TTGTAGAAGCTGAAAGGAAA+AGG 0.451081 2_4:+18466923 Msa0319130:CDS
GAGGAATCCGCGCTTAAAGC+TGG 0.455746 2_4:+18463314 Msa0319130:CDS
CAGGTTGGATAACCTTATAA+TGG 0.457504 2_4:+18464438 Msa0319130:intron
GGAGGCAGAGGCTGCAGAAG+CGG 0.467500 2_4:+18466879 Msa0319130:CDS
CTTCCTCTGTCTGAATATGC+TGG 0.476422 2_4:-18466652 None:intergenic
AGCCAAAGGGAGCAATGAAA+AGG 0.479925 2_4:+18463591 Msa0319130:CDS
CCTCATGGCGGAGGCTGAAG+AGG 0.487598 2_4:+18466849 Msa0319130:CDS
AACCATTGCTTCTTTCATTG+AGG 0.488576 2_4:+18464504 Msa0319130:CDS
TGCTCGAGCAGTTGCTGAAG+CGG 0.494217 2_4:+18466822 Msa0319130:CDS
CTGAAGTATCTTACATCTCG+TGG 0.499992 2_4:+18465638 Msa0319130:CDS
GGCAGAGGCTGCAGAAGCGG+AGG 0.501552 2_4:+18466882 Msa0319130:CDS
AGCGGAAGCCCTCATGGCGG+AGG 0.503203 2_4:+18466840 Msa0319130:CDS
CCTCTTCAGCCTCCGCCATG+AGG 0.504586 2_4:-18466849 None:intergenic
TGTATTATGCCCTCGCAAGC+AGG 0.507530 2_4:-18467099 None:intergenic
CCTCACCGCTGCGTTGTGAT+CGG 0.511101 2_4:-18462735 None:intergenic
TGCTGAAGCGGAAGCCCTCA+TGG 0.511274 2_4:+18466834 Msa0319130:CDS
ATAGAGTTGTCCTCGTGTAT+TGG 0.517777 2_4:-18463629 None:intergenic
GGCTGCCTCTTGTGCAGACA+TGG 0.522460 2_4:-18466791 None:intergenic
ATATCTAGCTTGAATGAACT+TGG 0.526305 2_4:+18464466 Msa0319130:CDS
ATCTCGTGGAAAACTGATCA+AGG 0.527774 2_4:+18465652 Msa0319130:CDS
AACTGCTCGAGCAGCACATG+CGG 0.528875 2_4:-18466812 None:intergenic
TTCCATAAAACCTGCTTGCG+AGG 0.531201 2_4:+18467089 Msa0319130:three_prime_UTR
GGCAAGTGGATGGGCTTCGA+GGG 0.532126 2_4:+18463565 Msa0319130:CDS
TATTCTGTAGGACCATTACT+GGG 0.533689 2_4:+18465580 Msa0319130:intron
AAATCGATCTCGGACTTGGT+AGG 0.533919 2_4:-18466748 None:intergenic
TTATATTTCAGGTGAAGCGC+AGG 0.535455 2_4:+18466611 Msa0319130:intron
AAGCTGGAGTTATCAAGCAT+GGG 0.537538 2_4:+18463330 Msa0319130:CDS
CTGTCTGAATATGCTGGAGT+AGG 0.541994 2_4:-18466646 None:intergenic
TGGCAAGTGGATGGGCTTCG+AGG 0.542668 2_4:+18463564 Msa0319130:CDS
CCATCAACATTATTATTGGA+AGG 0.543532 2_4:+18466679 Msa0319130:CDS
AATCGATCTCGGACTTGGTA+GGG 0.545887 2_4:-18466747 None:intergenic
AGAGGCAACAAAGGAGGCAG+AGG 0.547850 2_4:+18466867 Msa0319130:CDS
AGTCAGCAGGTGCCCAGTAA+TGG 0.551122 2_4:-18465592 None:intergenic
AAAGCTGGAGTTATCAAGCA+TGG 0.554090 2_4:+18463329 Msa0319130:CDS
TCCATAAAACCTGCTTGCGA+GGG 0.556748 2_4:+18467090 Msa0319130:three_prime_UTR
CAACATTATTATTGGAAGGG+AGG 0.564310 2_4:+18466683 Msa0319130:CDS
CATCAACATTATTATTGGAA+GGG 0.566044 2_4:+18466680 Msa0319130:CDS
AAGGTCCATGTCTGCACAAG+AGG 0.566181 2_4:+18466786 Msa0319130:CDS
GCCAAAGGGAGCAATGAAAA+GGG 0.571330 2_4:+18463592 Msa0319130:CDS
TACCTCAATGAAAGAAGCAA+TGG 0.571520 2_4:-18464506 None:intergenic
TCTAGCTTGAATGAACTTGG+TGG 0.579223 2_4:+18464469 Msa0319130:CDS
TGAGCGTGATGGCAAGTGGA+TGG 0.581001 2_4:+18463555 Msa0319130:CDS
GAGCGTGATGGCAAGTGGAT+GGG 0.581966 2_4:+18463556 Msa0319130:CDS
GGAGTTATCAAGCATGGGGT+GGG 0.587974 2_4:+18463335 Msa0319130:CDS
CTTCCAATAATAATGTTGAT+GGG 0.591104 2_4:-18466678 None:intergenic
TTAGATCAACATTTGACCGA+AGG 0.594489 2_4:-18463406 None:intergenic
GGAGGCTGAAGAGGCAACAA+AGG 0.596715 2_4:+18466858 Msa0319130:CDS
TGGAGTTATCAAGCATGGGG+TGG 0.597697 2_4:+18463334 Msa0319130:CDS
GGCTTCGAGGGAGAAGCCAA+AGG 0.598632 2_4:+18463577 Msa0319130:CDS
GGCTGAAGAGGCAACAAAGG+AGG 0.605389 2_4:+18466861 Msa0319130:CDS
ATGGCGAAATTTGAGCGTGA+TGG 0.606348 2_4:+18463544 Msa0319130:CDS
TAGGGATATTGCTCTCATCC+CGG 0.608587 2_4:-18466729 None:intergenic
AGAAGCGGAGGCAGATGCAA+TGG 0.616552 2_4:+18466894 Msa0319130:CDS
ATTAAGTTATAGTATGACAA+AGG 0.618209 2_4:-18466992 None:intergenic
AGCTGAAAGGAAAAGGCTGA+AGG 0.619969 2_4:+18466930 Msa0319130:CDS
GCTTCGAGGGAGAAGCCAAA+GGG 0.621979 2_4:+18463578 Msa0319130:CDS
GGTTAAATTCAGGATCCTTG+AGG 0.623114 2_4:-18463373 None:intergenic
AATTTGAGCGTGATGGCAAG+TGG 0.631289 2_4:+18463551 Msa0319130:CDS
ATATCTCTTGAAACTTGAAG+AGG 0.637010 2_4:-18463701 None:intergenic
TTGACCGAAGGTATAAAACA+TGG 0.643379 2_4:-18463394 None:intergenic
CCGATCACAACGCAGCGGTG+AGG 0.645405 2_4:+18462735 Msa0319130:five_prime_UTR
AGCTGGAGTTATCAAGCATG+GGG 0.657193 2_4:+18463331 Msa0319130:CDS
GATAACTCCAGCTTTAAGCG+CGG 0.673274 2_4:-18463321 None:intergenic
CAGCGCCGATCACAACGCAG+CGG 0.700024 2_4:+18462730 Msa0319130:five_prime_UTR
ACTCCAGCATATTCAGACAG+AGG 0.701760 2_4:+18466649 Msa0319130:CDS
TAAATGGCGTACGATCCTCA+AGG 0.711423 2_4:+18463358 Msa0319130:CDS
TTATCAGGCACCAATACACG+AGG 0.743899 2_4:+18463619 Msa0319130:CDS
TGAAGCGGAAGCCCTCATGG+CGG 0.749745 2_4:+18466837 Msa0319130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAAATAAAATAATT+GGG - chr2_4:18463769-18463788 None:intergenic 0.0%
!!! ATTTTTTATAGATTTTGTTT+TGG + chr2_4:18462893-18462912 Msa0319130:intron 10.0%
!!! AATTTTTATAGATTTTGTTT+TGG + chr2_4:18462981-18463000 Msa0319130:intron 10.0%
!! AATATCTTAGAAAATTTATT+GGG + chr2_4:18464675-18464694 Msa0319130:intron 10.0%
!! AATATCTTAGAAAATTTATT+GGG + chr2_4:18464675-18464694 Msa0319130:intron 10.0%
!!! ATTTAGAATTAGAAAAAATA+AGG + chr2_4:18466767-18466786 Msa0319130:CDS 10.0%
!!! TTTATACCTATGATTTTTTT+GGG - chr2_4:18462640-18462659 None:intergenic 15.0%
!!! ATTTATACCTATGATTTTTT+TGG - chr2_4:18462641-18462660 None:intergenic 15.0%
!!! ATTTTGTTTTGGAATTTTTT+AGG + chr2_4:18462904-18462923 Msa0319130:intron 15.0%
!!! TTTTGTTTTGGAATTTTTTA+GGG + chr2_4:18462905-18462924 Msa0319130:intron 15.0%
!!! AATTTTTTAGGGTTTTTTTT+TGG + chr2_4:18462916-18462935 Msa0319130:intron 15.0%
!!! ATTTTTTAGGGTTTTTTTTT+GGG + chr2_4:18462917-18462936 Msa0319130:intron 15.0%
!! GATATAGAGTATAATTATTT+CGG + chr2_4:18463043-18463062 Msa0319130:intron 15.0%
!! TAAATAAATGATTCCTTTAT+AGG - chr2_4:18464401-18464420 None:intergenic 15.0%
!! GAATATCTTAGAAAATTTAT+TGG + chr2_4:18464674-18464693 Msa0319130:intron 15.0%
!! GAATATCTTAGAAAATTTAT+TGG + chr2_4:18464674-18464693 Msa0319130:intron 15.0%
!!! AATTTGAGATTTTATTTCAT+GGG + chr2_4:18466581-18466600 Msa0319130:intron 15.0%
!! CTATAACTTAATACATTAAT+AGG + chr2_4:18467003-18467022 Msa0319130:three_prime_UTR 15.0%
!! GATTACATATGATATTATTT+GGG + chr2_4:18467046-18467065 Msa0319130:three_prime_UTR 15.0%
!!! TTTTTTAGGGTTTTTTTTTG+GGG + chr2_4:18462918-18462937 Msa0319130:intron 20.0%
!! AAACTAAAACTTTCCTATAT+GGG - chr2_4:18463109-18463128 None:intergenic 20.0%
!! AAAACTAAAACTTTCCTATA+TGG - chr2_4:18463110-18463129 None:intergenic 20.0%
!!! TATAGGAAAGTTTTAGTTTT+AGG + chr2_4:18463110-18463129 Msa0319130:intron 20.0%
!! ATTTGATGTATTTATGATGT+TGG + chr2_4:18463224-18463243 Msa0319130:intron 20.0%
!! TATAAAACATGGTTAAATTC+AGG - chr2_4:18463386-18463405 None:intergenic 20.0%
!! GTAATGAATTGAATTAATGT+TGG + chr2_4:18463468-18463487 Msa0319130:intron 20.0%
!! TATTTATCTTGATCAACTAT+TGG + chr2_4:18464168-18464187 Msa0319130:intron 20.0%
!!! AAATAATTTTATAGTGCAGT+CGG + chr2_4:18464229-18464248 Msa0319130:intron 20.0%
!! TTTGTACTAATCATAGAATA+TGG - chr2_4:18464709-18464728 None:intergenic 20.0%
!! TTTGTACTAATCATAGAATA+TGG - chr2_4:18464709-18464728 None:intergenic 20.0%
!! TTCTATGATTAGTACAAATA+TGG + chr2_4:18464711-18464730 Msa0319130:intron 20.0%
!! TCTATGATTAGTACAAATAT+GGG + chr2_4:18464800-18464819 Msa0319130:intron 20.0%
!! GATTGTAATTTATTACTCTA+GGG - chr2_4:18464993-18465012 None:intergenic 20.0%
!! TGATTGTAATTTATTACTCT+AGG - chr2_4:18464994-18465013 None:intergenic 20.0%
!!! ATTTTCTTCTATACAATTCT+AGG - chr2_4:18465061-18465080 None:intergenic 20.0%
!!! AATAACATCTAGTGTTTTTT+TGG - chr2_4:18465891-18465910 None:intergenic 20.0%
!!! ATACACATCTATTTGAAATA+GGG + chr2_4:18466310-18466329 Msa0319130:intron 20.0%
!! TTTAAGTCTACATTAGAAAA+TGG - chr2_4:18466437-18466456 None:intergenic 20.0%
!! TAAATGTATAAGACTAAATC+AGG - chr2_4:18466500-18466519 None:intergenic 20.0%
!!! CAATTTGAGATTTTATTTCA+TGG + chr2_4:18466580-18466599 Msa0319130:intron 20.0%
!! ATTAAGTTATAGTATGACAA+AGG - chr2_4:18466995-18467014 None:intergenic 20.0%
!! GGATTACATATGATATTATT+TGG + chr2_4:18467045-18467064 Msa0319130:three_prime_UTR 20.0%
!!! TTCTAATCATTTTAGATGAT+CGG - chr2_4:18467140-18467159 None:intergenic 20.0%
! AAATGACCCAAAAAAATCAT+AGG + chr2_4:18462631-18462650 Msa0319130:five_prime_UTR 25.0%
! AACCCATTTAATGTGAATTT+AGG + chr2_4:18462662-18462681 Msa0319130:five_prime_UTR 25.0%
! GTCCTAAATTCACATTAAAT+GGG - chr2_4:18462667-18462686 None:intergenic 25.0%
! TGTCCTAAATTCACATTAAA+TGG - chr2_4:18462668-18462687 None:intergenic 25.0%
!!! GTTTCTTGTGTTTTTGATTT+AGG - chr2_4:18462706-18462725 None:intergenic 25.0%
! TATGAAATGAAATCGGAAAA+AGG - chr2_4:18462777-18462796 None:intergenic 25.0%
! ATCGGAATATGAAATGAAAT+CGG - chr2_4:18462784-18462803 None:intergenic 25.0%
!!! TTTTTAGGGTTTTTTTTTGG+GGG + chr2_4:18462919-18462938 Msa0319130:intron 25.0%
!!! CTTTGATCCAATGTATTTTT+TGG + chr2_4:18463080-18463099 Msa0319130:intron 25.0%
!!! TATTTTTTGGTTACCCATAT+AGG + chr2_4:18463093-18463112 Msa0319130:intron 25.0%
! ATAAAACAATCAAAACTCGT+AGG - chr2_4:18463167-18463186 None:intergenic 25.0%
!! TTAACCATGTTTTATACCTT+CGG + chr2_4:18463390-18463409 Msa0319130:CDS 25.0%
!! GCTTATTTATTCATTTGTTG+TGG + chr2_4:18463446-18463465 Msa0319130:intron 25.0%
! ATTAAAATTCCACTATGCTA+TGG - chr2_4:18463849-18463868 None:intergenic 25.0%
! TAGATTCTCTGATTGAAATA+CGG + chr2_4:18463928-18463947 Msa0319130:intron 25.0%
! AATCCTATTCAATTCTTGAT+GGG + chr2_4:18463954-18463973 Msa0319130:intron 25.0%
! CAAAACAAGATAATGAAATC+AGG - chr2_4:18464336-18464355 None:intergenic 25.0%
! TAGATATAGCTTCCATTATA+AGG - chr2_4:18464453-18464472 None:intergenic 25.0%
! ATCTTAGAAAATTTATTGGG+AGG + chr2_4:18464678-18464697 Msa0319130:intron 25.0%
! ATCTTAGAAAATTTATTGGG+AGG + chr2_4:18464678-18464697 Msa0319130:intron 25.0%
! TGAATTGTTATATGGTCATA+TGG + chr2_4:18464876-18464895 Msa0319130:intron 25.0%
! GATATTGTCTTGTAAATGAT+AGG - chr2_4:18465026-18465045 None:intergenic 25.0%
!! TTCATCATTTTGTATTCTGT+AGG + chr2_4:18465568-18465587 Msa0319130:intron 25.0%
! TATTGTAAGTTTGCATTAGA+TGG - chr2_4:18465713-18465732 None:intergenic 25.0%
! AAAAAACTTAAGACTCACAT+TGG + chr2_4:18465995-18466014 Msa0319130:intron 25.0%
! TATACCAATTATATGACTGT+AGG + chr2_4:18466098-18466117 Msa0319130:intron 25.0%
! TAGCTGAATAAAATAATCTC+AGG + chr2_4:18466162-18466181 Msa0319130:intron 25.0%
! AATAAAATAATCTCAGGACA+AGG + chr2_4:18466168-18466187 Msa0319130:intron 25.0%
! ATAAAATAATCTCAGGACAA+GGG + chr2_4:18466169-18466188 Msa0319130:intron 25.0%
!! CATACACATCTATTTGAAAT+AGG + chr2_4:18466309-18466328 Msa0319130:intron 25.0%
!! TACACATCTATTTGAAATAG+GGG + chr2_4:18466311-18466330 Msa0319130:intron 25.0%
! CATTTATTGTGAGCTATATT+TGG + chr2_4:18466514-18466533 Msa0319130:intron 25.0%
!!! TGGGTTGAATTTTATATTTC+AGG + chr2_4:18466600-18466619 Msa0319130:intron 25.0%
! CTTCCAATAATAATGTTGAT+GGG - chr2_4:18466681-18466700 None:intergenic 25.0%
! CATCAACATTATTATTGGAA+GGG + chr2_4:18466680-18466699 Msa0319130:CDS 25.0%
! TTCTAATTCTAAATCGATCT+CGG - chr2_4:18466761-18466780 None:intergenic 25.0%
! TATGGAAGAGCAAATAAAAT+TGG - chr2_4:18467076-18467095 None:intergenic 25.0%
TGAAATCGGAAAAAGGAAAT+CGG - chr2_4:18462770-18462789 None:intergenic 30.0%
TGGGTAACCAAAAAATACAT+TGG - chr2_4:18463090-18463109 None:intergenic 30.0%
! ATTTTCTGTATTGCTCGAAA+TGG + chr2_4:18463262-18463281 Msa0319130:exon 30.0%
! TTTTCTGTATTGCTCGAAAT+GGG + chr2_4:18463263-18463282 Msa0319130:exon 30.0%
! ACCTTTAGATCCAGATTTTA+CGG - chr2_4:18463495-18463514 None:intergenic 30.0%
ATCTAAAGGTTTCGTTATGT+GGG + chr2_4:18463505-18463524 Msa0319130:intron 30.0%
TCATCATCACTTAGAGAAAA+AGG - chr2_4:18463665-18463684 None:intergenic 30.0%
ATATCTCTTGAAACTTGAAG+AGG - chr2_4:18463704-18463723 None:intergenic 30.0%
! ACCTTATACTAGAGCTTTTT+GGG - chr2_4:18463742-18463761 None:intergenic 30.0%
! AACCTTATACTAGAGCTTTT+TGG - chr2_4:18463743-18463762 None:intergenic 30.0%
! AAAAAGCTCTAGTATAAGGT+TGG + chr2_4:18463742-18463761 Msa0319130:intron 30.0%
! AAAAGCTCTAGTATAAGGTT+GGG + chr2_4:18463743-18463762 Msa0319130:intron 30.0%
AGATTCTCTGATTGAAATAC+GGG + chr2_4:18463929-18463948 Msa0319130:intron 30.0%
GAATCCTATTCAATTCTTGA+TGG + chr2_4:18463953-18463972 Msa0319130:intron 30.0%
! GTTTTGCGTGAATCATATAA+AGG + chr2_4:18464350-18464369 Msa0319130:intron 30.0%
TAACTGTGTTTACGTTATAC+AGG + chr2_4:18464419-18464438 Msa0319130:intron 30.0%
! ATATCTAGCTTGAATGAACT+TGG + chr2_4:18464466-18464485 Msa0319130:CDS 30.0%
AAGCAGAACAAATAAAAGTG+TGG - chr2_4:18464549-18464568 None:intergenic 30.0%
! CATGTTGTTATTCTAACTTC+AGG + chr2_4:18464585-18464604 Msa0319130:intron 30.0%
CTACCTTGTGAATTGTTATA+TGG + chr2_4:18464868-18464887 Msa0319130:intron 30.0%
TGACCATATAACAATTCACA+AGG - chr2_4:18464874-18464893 None:intergenic 30.0%
ATTGTTATATGGTCATATGG+AGG + chr2_4:18464879-18464898 Msa0319130:intron 30.0%
!! CAATTCTAGGACTATAAACA+AGG - chr2_4:18465048-18465067 None:intergenic 30.0%
!! TTTGATTTTGCTAGCTAAGT+TGG + chr2_4:18465178-18465197 Msa0319130:intron 30.0%
! TTGATTTTGCTAGCTAAGTT+GGG + chr2_4:18465179-18465198 Msa0319130:intron 30.0%
TGAAGCTAATTTGAGCTAAT+TGG - chr2_4:18465274-18465293 None:intergenic 30.0%
TTGAAATAGCATCATAGATC+AGG - chr2_4:18465399-18465418 None:intergenic 30.0%
AAGTGTTATAGCATTGCATT+TGG + chr2_4:18465483-18465502 Msa0319130:intron 30.0%
!! AAGATGCTTGGATTAGTATT+AGG + chr2_4:18465764-18465783 Msa0319130:intron 30.0%
TCTCACATTAGCTAGAAATA+AGG + chr2_4:18465798-18465817 Msa0319130:intron 30.0%
AACTTGGTTCATGGAATATA+TGG - chr2_4:18465941-18465960 None:intergenic 30.0%
!! CGACATTAGAAGTTTTATGT+AGG - chr2_4:18466033-18466052 None:intergenic 30.0%
ACATAAAACTTCTAATGTCG+CGG + chr2_4:18466033-18466052 Msa0319130:intron 30.0%
TAAAATAATCTCAGGACAAG+GGG + chr2_4:18466170-18466189 Msa0319130:intron 30.0%
!!! AGTAGTGACTTTTTTCTTGA+AGG + chr2_4:18466241-18466260 Msa0319130:intron 30.0%
AAGAAAATTACAACTCGACA+AGG - chr2_4:18466280-18466299 None:intergenic 30.0%
! TTGGATGCTATTCTCATTTT+TGG + chr2_4:18466533-18466552 Msa0319130:intron 30.0%
ACACCCATCAACATTATTAT+TGG + chr2_4:18466675-18466694 Msa0319130:CDS 30.0%
CCTTCCAATAATAATGTTGA+TGG - chr2_4:18466682-18466701 None:intergenic 30.0%
CCATCAACATTATTATTGGA+AGG + chr2_4:18466679-18466698 Msa0319130:CDS 30.0%
! AAGGCTCTATGAAATTTTAC+CGG + chr2_4:18466710-18466729 Msa0319130:CDS 30.0%
!!! TTTTTTTTGGGGGAGTTACT+AGG + chr2_4:18462929-18462948 Msa0319130:intron 35.0%
!!! TTTAGTTTTAGGCTCAGTCA+AGG + chr2_4:18463121-18463140 Msa0319130:intron 35.0%
TTATGACTATGTAGAGCTCA+TGG + chr2_4:18463183-18463202 Msa0319130:intron 35.0%
!! TCTTCTGACCATTTTTGCTT+AGG - chr2_4:18463293-18463312 None:intergenic 35.0%
! TTGACCGAAGGTATAAAACA+TGG - chr2_4:18463397-18463416 None:intergenic 35.0%
TTAGATCAACATTTGACCGA+AGG - chr2_4:18463409-18463428 None:intergenic 35.0%
TCGGTCAAATGTTGATCTAA+AGG + chr2_4:18463409-18463428 Msa0319130:CDS 35.0%
TAATGTTGGACCGTAAAATC+TGG + chr2_4:18463482-18463501 Msa0319130:intron 35.0%
ACCGTAAAATCTGGATCTAA+AGG + chr2_4:18463491-18463510 Msa0319130:intron 35.0%
GATCTAAAGGTTTCGTTATG+TGG + chr2_4:18463504-18463523 Msa0319130:intron 35.0%
! AATGAAAAGGGTGCATTATC+AGG + chr2_4:18463604-18463623 Msa0319130:CDS 35.0%
TCAATCAGAGAATCTAACTG+AGG - chr2_4:18463924-18463943 None:intergenic 35.0%
GATCCCATCAAGAATTGAAT+AGG - chr2_4:18463960-18463979 None:intergenic 35.0%
GAAATTATCTTCCACTTGAG+GGG - chr2_4:18464011-18464030 None:intergenic 35.0%
CGAAATTATCTTCCACTTGA+GGG - chr2_4:18464012-18464031 None:intergenic 35.0%
TCGAAATTATCTTCCACTTG+AGG - chr2_4:18464013-18464032 None:intergenic 35.0%
AGATGTTCGAACGTAATCAA+GGG + chr2_4:18464032-18464051 Msa0319130:intron 35.0%
!! GTTGATCGGCTTTTTGAAAA+AGG + chr2_4:18464108-18464127 Msa0319130:intron 35.0%
TCGGCAATTGTCTTTCAATT+AGG + chr2_4:18464248-18464267 Msa0319130:intron 35.0%
CGGCAATTGTCTTTCAATTA+GGG + chr2_4:18464249-18464268 Msa0319130:intron 35.0%
ATGAATGATCTTAACACGCT+TGG - chr2_4:18464289-18464308 None:intergenic 35.0%
CAAGAATACAAGGAAAGCAA+TGG - chr2_4:18464313-18464332 None:intergenic 35.0%
TGAAATCAGGCAAGAATACA+AGG - chr2_4:18464323-18464342 None:intergenic 35.0%
! GTTTTGCTTGCATCCTATAA+AGG + chr2_4:18464385-18464404 Msa0319130:intron 35.0%
TGTGTTTACGTTATACAGGT+TGG + chr2_4:18464423-18464442 Msa0319130:intron 35.0%
! CAGGTTGGATAACCTTATAA+TGG + chr2_4:18464438-18464457 Msa0319130:intron 35.0%
AACCATTGCTTCTTTCATTG+AGG + chr2_4:18464504-18464523 Msa0319130:CDS 35.0%
TACCTCAATGAAAGAAGCAA+TGG - chr2_4:18464509-18464528 None:intergenic 35.0%
ATAGGTGAGATCATCTTAGT+GGG - chr2_4:18464957-18464976 None:intergenic 35.0%
AATAGGTGAGATCATCTTAG+TGG - chr2_4:18464958-18464977 None:intergenic 35.0%
ACTAAGATGATCTCACCTAT+TGG + chr2_4:18464957-18464976 Msa0319130:intron 35.0%
CTAAGATGATCTCACCTATT+GGG + chr2_4:18464958-18464977 Msa0319130:intron 35.0%
! TGATTTTGCTAGCTAAGTTG+GGG + chr2_4:18465180-18465199 Msa0319130:intron 35.0%
! CAGAGCTAGTTTGAAAAAGA+AGG + chr2_4:18465214-18465233 Msa0319130:intron 35.0%
CTCACTTGTCTTCAACATAA+TGG - chr2_4:18465251-18465270 None:intergenic 35.0%
! TTAGCTCAAATTAGCTTCAG+TGG + chr2_4:18465275-18465294 Msa0319130:intron 35.0%
GTTATAGCATTGCATTTGGT+TGG + chr2_4:18465487-18465506 Msa0319130:intron 35.0%
TATTCTGTAGGACCATTACT+GGG + chr2_4:18465580-18465599 Msa0319130:intron 35.0%
!! TTGCTTAACTCTAAGATGCT+TGG + chr2_4:18465752-18465771 Msa0319130:intron 35.0%
AGTGTCTATCCAGACATTAT+TGG + chr2_4:18465911-18465930 Msa0319130:intron 35.0%
TTGGTTCATGGAATATATGG+TGG - chr2_4:18465938-18465957 None:intergenic 35.0%
ACACTAACAAACTTGGTTCA+TGG - chr2_4:18465950-18465969 None:intergenic 35.0%
!! TGAACCAAGTTTGTTAGTGT+TGG + chr2_4:18465950-18465969 Msa0319130:intron 35.0%
!! GAACCAAGTTTGTTAGTGTT+GGG + chr2_4:18465951-18465970 Msa0319130:intron 35.0%
!! AACCAAGTTTGTTAGTGTTG+GGG + chr2_4:18465952-18465971 Msa0319130:intron 35.0%
TTGTGTAATGTGTAGGGTTT+GGG - chr2_4:18466071-18466090 None:intergenic 35.0%
TTTGTGTAATGTGTAGGGTT+TGG - chr2_4:18466072-18466091 None:intergenic 35.0%
CAGAGTTTGTGTAATGTGTA+GGG - chr2_4:18466077-18466096 None:intergenic 35.0%
CAGACCTACAGTCATATAAT+TGG - chr2_4:18466105-18466124 None:intergenic 35.0%
TGTTTCTTATATACAGCCGT+TGG + chr2_4:18466377-18466396 Msa0319130:intron 35.0%
CAACATTATTATTGGAAGGG+AGG + chr2_4:18466683-18466702 Msa0319130:CDS 35.0%
! AGGCTCTATGAAATTTTACC+GGG + chr2_4:18466711-18466730 Msa0319130:CDS 35.0%
! AAGCTTTTGTAGAAGCTGAA+AGG + chr2_4:18466917-18466936 Msa0319130:CDS 35.0%
TTGTAGAAGCTGAAAGGAAA+AGG + chr2_4:18466923-18466942 Msa0319130:CDS 35.0%
! GGACATGTAGAAGATTCTTT+TGG + chr2_4:18467024-18467043 Msa0319130:three_prime_UTR 35.0%
ACTAGGAATTGTGACGACAA+AGG + chr2_4:18462946-18462965 Msa0319130:intron 40.0%
CTAGGAATTGTGACGACAAA+GGG + chr2_4:18462947-18462966 Msa0319130:intron 40.0%
AATTGTGACGACAAAGGGAA+TGG + chr2_4:18462952-18462971 Msa0319130:intron 40.0%
ATTGTGACGACAAAGGGAAT+GGG + chr2_4:18462953-18462972 Msa0319130:intron 40.0%
TGGGTGTTCCTAAGCAAAAA+TGG + chr2_4:18463282-18463301 Msa0319130:CDS 40.0%
GCAAAAATGGTCAGAAGAAG+AGG + chr2_4:18463295-18463314 Msa0319130:CDS 40.0%
AAAGCTGGAGTTATCAAGCA+TGG + chr2_4:18463329-18463348 Msa0319130:CDS 40.0%
AAGCTGGAGTTATCAAGCAT+GGG + chr2_4:18463330-18463349 Msa0319130:CDS 40.0%
GGTTAAATTCAGGATCCTTG+AGG - chr2_4:18463376-18463395 None:intergenic 40.0%
GGGTTGTTGGATAGGATAAA+TGG + chr2_4:18463525-18463544 Msa0319130:intron 40.0%
ATAGAGTTGTCCTCGTGTAT+TGG - chr2_4:18463632-18463651 None:intergenic 40.0%
AATACACGAGGACAACTCTA+TGG + chr2_4:18463631-18463650 Msa0319130:CDS 40.0%
AGAGATATGCCGCAAATTTC+TGG + chr2_4:18463716-18463735 Msa0319130:CDS 40.0%
!! CTTTTTGGGCCAGAAATTTG+CGG - chr2_4:18463728-18463747 None:intergenic 40.0%
! GCCCAAAAAGCTCTAGTATA+AGG + chr2_4:18463738-18463757 Msa0319130:CDS 40.0%
AAATAGCAGCCATAGCATAG+TGG + chr2_4:18463837-18463856 Msa0319130:intron 40.0%
TGATGGGATCAGATCAGAAA+CGG + chr2_4:18463970-18463989 Msa0319130:intron 40.0%
TTGCAAATTATCCCCTCAAG+TGG + chr2_4:18463997-18464016 Msa0319130:intron 40.0%
GAGATGTTCGAACGTAATCA+AGG + chr2_4:18464031-18464050 Msa0319130:intron 40.0%
GACACTTTACCACTGTTGAT+CGG + chr2_4:18464094-18464113 Msa0319130:intron 40.0%
TTCAAAAAGCCGATCAACAG+TGG - chr2_4:18464106-18464125 None:intergenic 40.0%
!! CGGCTTTTTGAAAAAGGATG+AGG + chr2_4:18464114-18464133 Msa0319130:intron 40.0%
AATACTCGCATCTATCACCT+AGG + chr2_4:18464192-18464211 Msa0319130:intron 40.0%
ATACTCGCATCTATCACCTA+GGG + chr2_4:18464193-18464212 Msa0319130:intron 40.0%
TTTGTTCTATTCTGCACCCT+AGG - chr2_4:18464212-18464231 None:intergenic 40.0%
! TCTAGCTTGAATGAACTTGG+TGG + chr2_4:18464469-18464488 Msa0319130:CDS 40.0%
ATATGGTCATATGGAGGTCA+TGG + chr2_4:18464885-18464904 Msa0319130:intron 40.0%
TATGGTCATATGGAGGTCAT+GGG + chr2_4:18464886-18464905 Msa0319130:intron 40.0%
TAGGTGAGATCATCTTAGTG+GGG - chr2_4:18464956-18464975 None:intergenic 40.0%
!! AAACTAGCTCTGCTTCATGA+TGG - chr2_4:18465206-18465225 None:intergenic 40.0%
GTATTCTGTAGGACCATTAC+TGG + chr2_4:18465579-18465598 Msa0319130:intron 40.0%
! CTGAAGTATCTTACATCTCG+TGG + chr2_4:18465638-18465657 Msa0319130:CDS 40.0%
ATCTCGTGGAAAACTGATCA+AGG + chr2_4:18465652-18465671 Msa0319130:CDS 40.0%
! TAGGCTTTATAAGCTCTGCT+TGG - chr2_4:18465824-18465843 None:intergenic 40.0%
AAGCAGAGCTTATAAAGCCT+AGG + chr2_4:18465823-18465842 Msa0319130:intron 40.0%
GCAATCCTCACCATAGAAAT+TGG + chr2_4:18465845-18465864 Msa0319130:intron 40.0%
GCAAACCAATTTCTATGGTG+AGG - chr2_4:18465853-18465872 None:intergenic 40.0%
!! CACCATAGAAATTGGTTTGC+TGG + chr2_4:18465853-18465872 Msa0319130:intron 40.0%
CTCCAGCAAACCAATTTCTA+TGG - chr2_4:18465858-18465877 None:intergenic 40.0%
TATGGTGGTCCAATAATGTC+TGG - chr2_4:18465923-18465942 None:intergenic 40.0%
!! ACCAAGTTTGTTAGTGTTGG+GGG + chr2_4:18465953-18465972 Msa0319130:intron 40.0%
TGTGTAATGTGTAGGGTTTG+GGG - chr2_4:18466070-18466089 None:intergenic 40.0%
CCAGAGTTTGTGTAATGTGT+AGG - chr2_4:18466078-18466097 None:intergenic 40.0%
CCTACACATTACACAAACTC+TGG + chr2_4:18466075-18466094 Msa0319130:intron 40.0%
!! AGTGGAAAATGGGCTAGATA+TGG + chr2_4:18466134-18466153 Msa0319130:intron 40.0%
GAGAGATGGTGAAACGAATA+AGG + chr2_4:18466198-18466217 Msa0319130:intron 40.0%
!! TATTTGAAATAGGGGTGCTG+TGG + chr2_4:18466319-18466338 Msa0319130:intron 40.0%
! TTATATACAGCCGTTGGTTG+TGG + chr2_4:18466383-18466402 Msa0319130:intron 40.0%
! TATATACAGCCGTTGGTTGT+GGG + chr2_4:18466384-18466403 Msa0319130:intron 40.0%
! TTATATTTCAGGTGAAGCGC+AGG + chr2_4:18466611-18466630 Msa0319130:intron 40.0%
TTATTGGAAGGGAGGCAAAA+AGG + chr2_4:18466691-18466710 Msa0319130:CDS 40.0%
TTCTAAATCGATCTCGGACT+TGG - chr2_4:18466755-18466774 None:intergenic 40.0%
AGGAGAAAAACACCCAAAGA+CGG + chr2_4:18466950-18466969 Msa0319130:CDS 40.0%
AGCCAAGATTTACCGTCTTT+GGG - chr2_4:18466965-18466984 None:intergenic 40.0%
AAGCCAAGATTTACCGTCTT+TGG - chr2_4:18466966-18466985 None:intergenic 40.0%
!!! AGTTTTAGGCTCAGTCAAGG+TGG + chr2_4:18463124-18463143 Msa0319130:intron 45.0%
!! GTTTTAGGCTCAGTCAAGGT+GGG + chr2_4:18463125-18463144 Msa0319130:intron 45.0%
!! GATAACTCCAGCTTTAAGCG+CGG - chr2_4:18463324-18463343 None:intergenic 45.0%
AGCTGGAGTTATCAAGCATG+GGG + chr2_4:18463331-18463350 Msa0319130:CDS 45.0%
TAAATGGCGTACGATCCTCA+AGG + chr2_4:18463358-18463377 Msa0319130:CDS 45.0%
! GGTTTCGTTATGTGGGTTGT+TGG + chr2_4:18463512-18463531 Msa0319130:intron 45.0%
! CGTTATGTGGGTTGTTGGAT+AGG + chr2_4:18463517-18463536 Msa0319130:intron 45.0%
ATGGCGAAATTTGAGCGTGA+TGG + chr2_4:18463544-18463563 Msa0319130:CDS 45.0%
AATTTGAGCGTGATGGCAAG+TGG + chr2_4:18463551-18463570 Msa0319130:CDS 45.0%
AGCCAAAGGGAGCAATGAAA+AGG + chr2_4:18463591-18463610 Msa0319130:CDS 45.0%
GCCAAAGGGAGCAATGAAAA+GGG + chr2_4:18463592-18463611 Msa0319130:CDS 45.0%
! ACCCTTTTCATTGCTCCCTT+TGG - chr2_4:18463596-18463615 None:intergenic 45.0%
TTATCAGGCACCAATACACG+AGG + chr2_4:18463619-18463638 Msa0319130:CDS 45.0%
! GTCACTTTAGCAACCACACA+AGG + chr2_4:18464070-18464089 Msa0319130:intron 45.0%
! TGGTAAAGTGTCACCTTGTG+TGG - chr2_4:18464086-18464105 None:intergenic 45.0%
TACACCAGCAAGCATATCAG+AGG - chr2_4:18464916-18464935 None:intergenic 45.0%
! CTGATATGCTTGCTGGTGTA+AGG + chr2_4:18464916-18464935 Msa0319130:intron 45.0%
AGATGATCTCACCTATTGGG+AGG + chr2_4:18464961-18464980 Msa0319130:intron 45.0%
TAACCAGGTTTCAGAAGGCA+TGG - chr2_4:18465337-18465356 None:intergenic 45.0%
CACAGTAACCAGGTTTCAGA+AGG - chr2_4:18465342-18465361 None:intergenic 45.0%
AACCTGGTTACTGTGTCTTG+TGG + chr2_4:18465347-18465366 Msa0319130:intron 45.0%
AACCACAAGACACAGTAACC+AGG - chr2_4:18465352-18465371 None:intergenic 45.0%
!!! AGCAGCTTTTTGAAGTCAGC+AGG - chr2_4:18465608-18465627 None:intergenic 45.0%
TTCTATGGTGAGGATTGCCT+AGG - chr2_4:18465843-18465862 None:intergenic 45.0%
!! TGGTTTGCTGGAGTTGAATC+AGG + chr2_4:18465865-18465884 Msa0319130:intron 45.0%
ACCCCCAACACTAACAAACT+TGG - chr2_4:18465957-18465976 None:intergenic 45.0%
ACTCACATTGGCGTGAGATA+AGG + chr2_4:18466007-18466026 Msa0319130:intron 45.0%
CTAATGTCGCGGCAAATCTT+AGG + chr2_4:18466044-18466063 Msa0319130:intron 45.0%
TGAGTTCGTGGAGTGGAAAA+TGG + chr2_4:18466123-18466142 Msa0319130:intron 45.0%
GAGTTCGTGGAGTGGAAAAT+GGG + chr2_4:18466124-18466143 Msa0319130:intron 45.0%
AATCTCAGGACAAGGGGATT+TGG + chr2_4:18466176-18466195 Msa0319130:intron 45.0%
CTGTCTGAATATGCTGGAGT+AGG - chr2_4:18466649-18466668 None:intergenic 45.0%
ACTCCAGCATATTCAGACAG+AGG + chr2_4:18466649-18466668 Msa0319130:CDS 45.0%
CTTCCTCTGTCTGAATATGC+TGG - chr2_4:18466655-18466674 None:intergenic 45.0%
TAGGGATATTGCTCTCATCC+CGG - chr2_4:18466732-18466751 None:intergenic 45.0%
! AATCGATCTCGGACTTGGTA+GGG - chr2_4:18466750-18466769 None:intergenic 45.0%
! AAATCGATCTCGGACTTGGT+AGG - chr2_4:18466751-18466770 None:intergenic 45.0%
AGCTGAAAGGAAAAGGCTGA+AGG + chr2_4:18466930-18466949 Msa0319130:CDS 45.0%
CACCCAAAGACGGTAAATCT+TGG + chr2_4:18466960-18466979 Msa0319130:exon 45.0%
TTCCATAAAACCTGCTTGCG+AGG + chr2_4:18467089-18467108 Msa0319130:three_prime_UTR 45.0%
TCCATAAAACCTGCTTGCGA+GGG + chr2_4:18467090-18467109 Msa0319130:three_prime_UTR 45.0%
!! CAAAAATAAAATAAAATAAT+TGG - chr2_4:18463770-18463789 None:intergenic 5.0%
!!! TTATTTTTGTTTTTTTAATA+CGG + chr2_4:18463781-18463800 Msa0319130:intron 5.0%
ACCGCATCACAGAATTGCGT+CGG + chr2_4:18462859-18462878 Msa0319130:intron 50.0%
TCCGACGCAATTCTGTGATG+CGG - chr2_4:18462863-18462882 None:intergenic 50.0%
TGGAGTTATCAAGCATGGGG+TGG + chr2_4:18463334-18463353 Msa0319130:CDS 50.0%
GGAGTTATCAAGCATGGGGT+GGG + chr2_4:18463335-18463354 Msa0319130:CDS 50.0%
TCAAGCATGGGGTGGGTAAA+TGG + chr2_4:18463342-18463361 Msa0319130:CDS 50.0%
TGAATCCTGACGCAAGAGTG+AGG + chr2_4:18464842-18464861 Msa0319130:intron 50.0%
ACAGCCTCTGATATGCTTGC+TGG + chr2_4:18464909-18464928 Msa0319130:intron 50.0%
!! ACTCCATGCCTTCTGAAACC+TGG + chr2_4:18465331-18465350 Msa0319130:intron 50.0%
TGACTGTAGGTCTGAGTTCG+TGG + chr2_4:18466111-18466130 Msa0319130:intron 50.0%
GACAAGGGGATTTGGAGAGA+TGG + chr2_4:18466184-18466203 Msa0319130:intron 50.0%
TTCAGGTGAAGCGCAGGTAT+AGG + chr2_4:18466617-18466636 Msa0319130:intron 50.0%
AAGGTCCATGTCTGCACAAG+AGG + chr2_4:18466786-18466805 Msa0319130:CDS 50.0%
TGTATTATGCCCTCGCAAGC+AGG - chr2_4:18467102-18467121 None:intergenic 50.0%
ATATTCCGATCTCCCTCGCG+TGG + chr2_4:18462794-18462813 Msa0319130:intron 55.0%
GTGATGCGGTGCCCTTTGAA+GGG - chr2_4:18462849-18462868 None:intergenic 55.0%
TGTGATGCGGTGCCCTTTGA+AGG - chr2_4:18462850-18462869 None:intergenic 55.0%
AGAATTGCGTCGGAGCTGAG+CGG + chr2_4:18462869-18462888 Msa0319130:intron 55.0%
GAGGAATCCGCGCTTAAAGC+TGG + chr2_4:18463314-18463333 Msa0319130:CDS 55.0%
TGAGCGTGATGGCAAGTGGA+TGG + chr2_4:18463555-18463574 Msa0319130:CDS 55.0%
GAGCGTGATGGCAAGTGGAT+GGG + chr2_4:18463556-18463575 Msa0319130:CDS 55.0%
GCTTCGAGGGAGAAGCCAAA+GGG + chr2_4:18463578-18463597 Msa0319130:CDS 55.0%
ATCCTGACGCAAGAGTGAGG+TGG + chr2_4:18464845-18464864 Msa0319130:intron 55.0%
TAGGGCACAAGCCTCCCAAT+AGG - chr2_4:18464975-18464994 None:intergenic 55.0%
TGCAAGACACTCACACGCAC+AGG - chr2_4:18465308-18465327 None:intergenic 55.0%
AGTCAGCAGGTGCCCAGTAA+TGG - chr2_4:18465595-18465614 None:intergenic 55.0%
GTAGGTCTGAGTTCGTGGAG+TGG + chr2_4:18466116-18466135 Msa0319130:intron 55.0%
! ACAGCCGTTGGTTGTGGGTT+TGG + chr2_4:18466389-18466408 Msa0319130:intron 55.0%
! CAGCCGTTGGTTGTGGGTTT+GGG + chr2_4:18466390-18466409 Msa0319130:intron 55.0%
CAGCCCAAACCCACAACCAA+CGG - chr2_4:18466396-18466415 None:intergenic 55.0%
AACTGCTCGAGCAGCACATG+CGG - chr2_4:18466815-18466834 None:intergenic 55.0%
TGCTCGAGCAGTTGCTGAAG+CGG + chr2_4:18466822-18466841 Msa0319130:CDS 55.0%
GGAGGCTGAAGAGGCAACAA+AGG + chr2_4:18466858-18466877 Msa0319130:CDS 55.0%
GGCTGAAGAGGCAACAAAGG+AGG + chr2_4:18466861-18466880 Msa0319130:CDS 55.0%
AGAGGCAACAAAGGAGGCAG+AGG + chr2_4:18466867-18466886 Msa0319130:CDS 55.0%
AGAAGCGGAGGCAGATGCAA+TGG + chr2_4:18466894-18466913 Msa0319130:CDS 55.0%
! GCCCTCGCAAGCAGGTTTTA+TGG - chr2_4:18467094-18467113 None:intergenic 55.0%
CCTCACCGCTGCGTTGTGAT+CGG - chr2_4:18462738-18462757 None:intergenic 60.0%
GATTCCGGCCGCCCTTCAAA+GGG + chr2_4:18462835-18462854 Msa0319130:intron 60.0%
! ATGCGGTGCCCTTTGAAGGG+CGG - chr2_4:18462846-18462865 None:intergenic 60.0%
! TGGCAAGTGGATGGGCTTCG+AGG + chr2_4:18463564-18463583 Msa0319130:CDS 60.0%
! GGCAAGTGGATGGGCTTCGA+GGG + chr2_4:18463565-18463584 Msa0319130:CDS 60.0%
GGCTTCGAGGGAGAAGCCAA+AGG + chr2_4:18463577-18463596 Msa0319130:CDS 60.0%
AGCCACCTCACTCTTGCGTC+AGG - chr2_4:18464850-18464869 None:intergenic 60.0%
GGCTGCCTCTTGTGCAGACA+TGG - chr2_4:18466794-18466813 None:intergenic 60.0%
TGCTGAAGCGGAAGCCCTCA+TGG + chr2_4:18466834-18466853 Msa0319130:CDS 60.0%
TGAAGCGGAAGCCCTCATGG+CGG + chr2_4:18466837-18466856 Msa0319130:CDS 60.0%
CTCTTCAGCCTCCGCCATGA+GGG - chr2_4:18466851-18466870 None:intergenic 60.0%
!! CAGCGCCGATCACAACGCAG+CGG + chr2_4:18462730-18462749 Msa0319130:five_prime_UTR 65.0%
CCGATCACAACGCAGCGGTG+AGG + chr2_4:18462735-18462754 Msa0319130:five_prime_UTR 65.0%
TTCCGATCTCCCTCGCGTGG+TGG + chr2_4:18462797-18462816 Msa0319130:intron 65.0%
CGCCGACGAGGAAGCGATTC+CGG + chr2_4:18462820-18462839 Msa0319130:intron 65.0%
GGCCGGAATCGCTTCCTCGT+CGG - chr2_4:18462825-18462844 None:intergenic 65.0%
CGATTCCGGCCGCCCTTCAA+AGG + chr2_4:18462834-18462853 Msa0319130:intron 65.0%
CCTCTTCAGCCTCCGCCATG+AGG - chr2_4:18466852-18466871 None:intergenic 65.0%
! CCTCATGGCGGAGGCTGAAG+AGG + chr2_4:18466849-18466868 Msa0319130:CDS 65.0%
GGAGGCAGAGGCTGCAGAAG+CGG + chr2_4:18466879-18466898 Msa0319130:CDS 65.0%
CGCCACCACGCGAGGGAGAT+CGG - chr2_4:18462802-18462821 None:intergenic 70.0%
! GGTGCCCTTTGAAGGGCGGC+CGG - chr2_4:18462842-18462861 None:intergenic 70.0%
AGCGGAAGCCCTCATGGCGG+AGG + chr2_4:18466840-18466859 Msa0319130:CDS 70.0%
GGCAGAGGCTGCAGAAGCGG+AGG + chr2_4:18466882-18466901 Msa0319130:CDS 70.0%
TCGTCGGCGCCACCACGCGA+GGG - chr2_4:18462809-18462828 None:intergenic 75.0%
! CTCGTCGGCGCCACCACGCG+AGG - chr2_4:18462810-18462829 None:intergenic 80.0%
!!! CTCGCGTGGTGGCGCCGACG+AGG + chr2_4:18462808-18462827 Msa0319130:intron 80.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 18462618 18467224 18462618 ID=Msa0319130;Name=Msa0319130
chr2_4 mRNA 18462618 18467224 18462618 ID=Msa0319130-mRNA-1;Parent=Msa0319130;Name=Msa0319130-mRNA-1;_AED=0.35;_eAED=0.35;_QI=167|1|1|1|0.6|0.66|6|249|297
chr2_4 exon 18462618 18462756 18462618 ID=Msa0319130-mRNA-1:exon:6870;Parent=Msa0319130-mRNA-1
chr2_4 exon 18463253 18463430 18463253 ID=Msa0319130-mRNA-1:exon:6871;Parent=Msa0319130-mRNA-1
chr2_4 exon 18463539 18463759 18463539 ID=Msa0319130-mRNA-1:exon:6872;Parent=Msa0319130-mRNA-1
chr2_4 exon 18464441 18464525 18464441 ID=Msa0319130-mRNA-1:exon:6873;Parent=Msa0319130-mRNA-1
chr2_4 exon 18465590 18465673 18465590 ID=Msa0319130-mRNA-1:exon:6874;Parent=Msa0319130-mRNA-1
chr2_4 exon 18466622 18467224 18466622 ID=Msa0319130-mRNA-1:exon:6875;Parent=Msa0319130-mRNA-1
chr2_4 five_prime_UTR 18462618 18462756 18462618 ID=Msa0319130-mRNA-1:five_prime_utr;Parent=Msa0319130-mRNA-1
chr2_4 five_prime_UTR 18463253 18463280 18463253 ID=Msa0319130-mRNA-1:five_prime_utr;Parent=Msa0319130-mRNA-1
chr2_4 CDS 18463281 18463430 18463281 ID=Msa0319130-mRNA-1:cds;Parent=Msa0319130-mRNA-1
chr2_4 CDS 18463539 18463759 18463539 ID=Msa0319130-mRNA-1:cds;Parent=Msa0319130-mRNA-1
chr2_4 CDS 18464441 18464525 18464441 ID=Msa0319130-mRNA-1:cds;Parent=Msa0319130-mRNA-1
chr2_4 CDS 18465590 18465673 18465590 ID=Msa0319130-mRNA-1:cds;Parent=Msa0319130-mRNA-1
chr2_4 CDS 18466622 18466975 18466622 ID=Msa0319130-mRNA-1:cds;Parent=Msa0319130-mRNA-1
chr2_4 three_prime_UTR 18466976 18467224 18466976 ID=Msa0319130-mRNA-1:three_prime_utr;Parent=Msa0319130-mRNA-1
Gene Sequence

>Msa0319130

ATGGGTGTTCCTAAGCAAAAATGGTCAGAAGAAGAGGAATCCGCGCTTAAAGCTGGAGTTATCAAGCATGGGGTGGGTAAATGGCGTACGATCCTCAAGGATCCTGAATTTAACCATGTTTTATACCTTCGGTCAAATGTTGATCTAAAGGATAAATGGCGAAATTTGAGCGTGATGGCAAGTGGATGGGCTTCGAGGGAGAAGCCAAAGGGAGCAATGAAAAGGGTGCATTATCAGGCACCAATACACGAGGACAACTCTATGGCTGTCACTCCTTTTTCTCTAAGTGATGATGAATTTGTTGATGTTCAGCCTCTTCAAGTTTCAAGAGATATGCCGCAAATTTCTGGCCCAAAAAGCTCTAGTATAAGGTTGGATAACCTTATAATGGAAGCTATATCTAGCTTGAATGAACTTGGTGGTTCTAATAAAACAACCATTGCTTCTTTCATTGAGGACCATTACTGGGCACCTGCTGACTTCAAAAAGCTGCTGTCAGCAAAACTGAAGTATCTTACATCTCGTGGAAAACTGATCAAGGTGAAGCGCAGGTATAGGATTGCACCTACTCCAGCATATTCAGACAGAGGAAGACACCCATCAACATTATTATTGGAAGGGAGGCAAAAAGGCTCTATGAAATTTTACCGGGATGAGAGCAATATCCCTACCAAGTCCGAGATCGATTTAGAATTAGAAAAAATAAGGTCCATGTCTGCACAAGAGGCAGCCGCATGTGCTGCTCGAGCAGTTGCTGAAGCGGAAGCCCTCATGGCGGAGGCTGAAGAGGCAACAAAGGAGGCAGAGGCTGCAGAAGCGGAGGCAGATGCAATGGAAGCTTTTGTAGAAGCTGAAAGGAAAAGGCTGAAGGAGAAAAACACCCAAAGACGGTAA

Protein sequence

>Msa0319130

MGVPKQKWSEEEESALKAGVIKHGVGKWRTILKDPEFNHVLYLRSNVDLKDKWRNLSVMASGWASREKPKGAMKRVHYQAPIHEDNSMAVTPFSLSDDEFVDVQPLQVSRDMPQISGPKSSSIRLDNLIMEAISSLNELGGSNKTTIASFIEDHYWAPADFKKLLSAKLKYLTSRGKLIKVKRRYRIAPTPAYSDRGRHPSTLLLEGRQKGSMKFYRDESNIPTKSEIDLELEKIRSMSAQEAAACAARAVAEAEALMAEAEEATKEAEAAEAEADAMEAFVEAERKRLKEKNTQRR*