Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0319130 | XP_013463066.1 | 98.316 | 297 | 5 | 0 | 1 | 297 | 1 | 297 | 0.0 | 592 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0319130 | sp|Q8VWK4|TRB1_ARATH | 57.895 | 247 | 91 | 6 | 1 | 241 | 1 | 240 | 1.83e-86 | 263 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa0319130 | TF | MYB-related |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0014710 | Msa0319130 | 0.813352 | 2.672939e-51 | -8.615850e-47 |
Msa0021210 | Msa0319130 | 0.800884 | 1.169041e-48 | -8.615850e-47 |
Msa0043730 | Msa0319130 | 0.821423 | 4.070171e-53 | -8.615850e-47 |
Msa0085720 | Msa0319130 | 0.807612 | 4.642801e-50 | -8.615850e-47 |
Msa0114430 | Msa0319130 | 0.801095 | 1.058257e-48 | -8.615850e-47 |
Msa0120340 | Msa0319130 | 0.810450 | 1.145664e-50 | -8.615850e-47 |
Msa0124550 | Msa0319130 | 0.803540 | 3.320593e-49 | -8.615850e-47 |
Msa0130520 | Msa0319130 | 0.832512 | 9.060076e-56 | -8.615850e-47 |
Msa0140510 | Msa0319130 | -0.802022 | 6.831996e-49 | -8.615850e-47 |
Msa0175050 | Msa0319130 | 0.815925 | 7.200879e-52 | -8.615850e-47 |
Msa0176330 | Msa0319130 | 0.803916 | 2.773595e-49 | -8.615850e-47 |
Msa0182570 | Msa0319130 | 0.811105 | 8.266527e-51 | -8.615850e-47 |
Msa0241740 | Msa0319130 | 0.830468 | 2.887069e-55 | -8.615850e-47 |
Msa0279770 | Msa0319130 | 0.828577 | 8.320952e-55 | -8.615850e-47 |
Msa0319130 | Msa0344870 | 0.814753 | 1.312261e-51 | -8.615850e-47 |
Msa0319130 | Msa0377530 | 0.817997 | 2.466341e-52 | -8.615850e-47 |
Msa0319130 | Msa0388030 | -0.825400 | 4.785009e-54 | -8.615850e-47 |
Msa0319130 | Msa0389810 | 0.800697 | 1.275999e-48 | -8.615850e-47 |
Msa0319130 | Msa0433530 | 0.803289 | 3.742394e-49 | -8.615850e-47 |
Msa0319130 | Msa0452810 | -0.812375 | 4.376185e-51 | -8.615850e-47 |
Msa0319130 | Msa0464900 | 0.825477 | 4.588730e-54 | -8.615850e-47 |
Msa0319130 | Msa0468130 | 0.800893 | 1.163926e-48 | -8.615850e-47 |
Msa0319130 | Msa0473240 | 0.822381 | 2.441492e-53 | -8.615850e-47 |
Msa0319130 | Msa0517490 | 0.826444 | 2.703939e-54 | -8.615850e-47 |
Msa0319130 | Msa0524600 | 0.802042 | 6.767138e-49 | -8.615850e-47 |
Msa0319130 | Msa0525610 | 0.818836 | 1.592382e-52 | -8.615850e-47 |
Msa0319130 | Msa0549780 | 0.801793 | 7.613205e-49 | -8.615850e-47 |
Msa0319130 | Msa0587190 | 0.814094 | 1.835674e-51 | -8.615850e-47 |
Msa0319130 | Msa0626990 | 0.808067 | 3.716251e-50 | -8.615850e-47 |
Msa0319130 | Msa0627350 | 0.800146 | 1.652662e-48 | -8.615850e-47 |
Msa0319130 | Msa0679550 | 0.815605 | 8.486413e-52 | -8.615850e-47 |
Msa0319130 | Msa0731180 | 0.813741 | 2.195187e-51 | -8.615850e-47 |
Msa0319130 | Msa0748070 | 0.806973 | 6.341060e-50 | -8.615850e-47 |
Msa0319130 | Msa0799060 | 0.800672 | 1.291410e-48 | -8.615850e-47 |
Msa0319130 | Msa0892570 | 0.804404 | 2.195839e-49 | -8.615850e-47 |
Msa0319130 | Msa0982270 | 0.803029 | 4.235979e-49 | -8.615850e-47 |
Msa0319130 | Msa1021510 | 0.841654 | 4.169247e-58 | -8.615850e-47 |
Msa0319130 | Msa1034280 | 0.802954 | 4.391209e-49 | -8.615850e-47 |
Msa0319130 | Msa1105500 | 0.835574 | 1.550132e-56 | -8.615850e-47 |
Msa0319130 | Msa1174310 | 0.836390 | 9.623142e-57 | -8.615850e-47 |
Msa0319130 | Msa1235400 | 0.814215 | 1.725754e-51 | -8.615850e-47 |
Msa0319130 | Msa1276510 | 0.806914 | 6.526516e-50 | -8.615850e-47 |
Msa0319130 | Msa1306750 | 0.816838 | 4.497591e-52 | -8.615850e-47 |
Msa0319130 | Msa1306760 | 0.817728 | 2.837497e-52 | -8.615850e-47 |
Msa0319130 | Msa1307740 | 0.803157 | 3.986179e-49 | -8.615850e-47 |
Msa0319130 | Msa1314770 | 0.844868 | 5.791670e-59 | -8.615850e-47 |
Msa0319130 | Msa1417810 | -0.804554 | 2.043447e-49 | -8.615850e-47 |
Msa0319130 | Msa1435400 | 0.834085 | 3.673992e-56 | -8.615850e-47 |
Msa0319130 | Msa1440940 | 0.829774 | 4.263887e-55 | -8.615850e-47 |
Msa0319130 | Msa1445400 | -0.803638 | 3.168394e-49 | -8.615850e-47 |
Msa0319130 | Msa1449350 | -0.805940 | 1.047053e-49 | -8.615850e-47 |
Msa0319130 | Msa1451620 | -0.805108 | 1.565278e-49 | -8.615850e-47 |
Msa0319130 | Msa1462930 | 0.804360 | 2.242838e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0319130 | MtrunA17_Chr2g0293381 | 98.316 | 297 | 5 | 0 | 1 | 297 | 1 | 297 | 0.0 | 592 |
Msa0319130 | MtrunA17_Chr8g0384671 | 75.104 | 241 | 54 | 2 | 1 | 239 | 1 | 237 | 8.90e-128 | 365 |
Msa0319130 | MtrunA17_Chr4g0054131 | 44.664 | 253 | 124 | 5 | 1 | 239 | 1 | 251 | 1.14e-63 | 202 |
Msa0319130 | MtrunA17_Chr5g0401061 | 48.548 | 241 | 111 | 6 | 1 | 236 | 1 | 233 | 1.75e-63 | 202 |
Msa0319130 | MtrunA17_Chr8g0383821 | 64.000 | 125 | 45 | 0 | 1 | 125 | 1 | 125 | 5.03e-52 | 167 |
Msa0319130 | MtrunA17_Chr1g0195251 | 64.463 | 121 | 40 | 2 | 125 | 245 | 295 | 412 | 7.29e-41 | 147 |
Msa0319130 | MtrunA17_Chr8g0342871 | 33.446 | 296 | 154 | 7 | 1 | 282 | 1 | 267 | 2.95e-32 | 120 |
Msa0319130 | MtrunA17_Chr2g0329921 | 35.349 | 215 | 108 | 4 | 1 | 190 | 1 | 209 | 1.46e-28 | 111 |
Msa0319130 | MtrunA17_Chr1g0166681 | 67.123 | 73 | 23 | 1 | 1 | 73 | 1 | 72 | 5.08e-27 | 104 |
Msa0319130 | MtrunA17_Chr1g0195261 | 72.000 | 50 | 14 | 0 | 1 | 50 | 1 | 50 | 3.35e-20 | 82.0 |
Msa0319130 | MtrunA17_Chr2g0293401 | 61.538 | 65 | 25 | 0 | 59 | 123 | 1 | 65 | 9.42e-19 | 78.6 |
Msa0319130 | MtrunA17_Chr8g0383841 | 68.605 | 86 | 18 | 1 | 187 | 263 | 2 | 87 | 1.47e-15 | 71.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0319130 | AT1G49950.3 | 57.895 | 247 | 91 | 6 | 1 | 241 | 1 | 240 | 1.86e-87 | 263 |
Msa0319130 | AT1G49950.1 | 57.895 | 247 | 91 | 6 | 1 | 241 | 1 | 240 | 1.86e-87 | 263 |
Msa0319130 | AT1G49950.2 | 57.895 | 247 | 91 | 6 | 1 | 241 | 1 | 240 | 1.86e-87 | 263 |
Msa0319130 | AT3G49850.1 | 42.735 | 234 | 128 | 3 | 1 | 232 | 1 | 230 | 8.71e-53 | 174 |
Msa0319130 | AT3G49850.2 | 42.735 | 234 | 128 | 3 | 1 | 232 | 1 | 230 | 8.71e-53 | 174 |
Msa0319130 | AT5G67580.2 | 43.210 | 243 | 131 | 5 | 1 | 239 | 1 | 240 | 2.24e-52 | 174 |
Msa0319130 | AT5G67580.1 | 43.210 | 243 | 131 | 5 | 1 | 239 | 1 | 240 | 2.24e-52 | 174 |
Msa0319130 | AT1G72740.2 | 30.796 | 289 | 173 | 3 | 1 | 289 | 1 | 262 | 1.95e-32 | 121 |
Msa0319130 | AT1G72740.1 | 30.508 | 295 | 172 | 4 | 1 | 289 | 1 | 268 | 3.94e-30 | 115 |
Msa0319130 | AT1G17520.4 | 38.342 | 193 | 112 | 2 | 1 | 187 | 1 | 192 | 2.40e-28 | 110 |
Msa0319130 | AT1G17520.1 | 39.572 | 187 | 106 | 2 | 1 | 181 | 1 | 186 | 1.94e-27 | 108 |
Msa0319130 | AT1G17520.3 | 38.144 | 194 | 112 | 3 | 1 | 187 | 1 | 193 | 7.03e-27 | 107 |
Msa0319130 | AT1G17520.2 | 39.362 | 188 | 106 | 3 | 1 | 181 | 1 | 187 | 5.26e-26 | 104 |
Msa0319130 | AT1G54260.1 | 45.205 | 73 | 40 | 0 | 120 | 192 | 2 | 74 | 3.24e-12 | 64.7 |
Find 96 sgRNAs with CRISPR-Local
Find 337 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTCCTAAATTCACATTAAA+TGG | 0.080322 | 2_4:-18462665 | None:intergenic |
GGATTACATATGATATTATT+TGG | 0.094051 | 2_4:+18467045 | Msa0319130:three_prime_UTR |
AGAGATATGCCGCAAATTTC+TGG | 0.156146 | 2_4:+18463716 | Msa0319130:CDS |
AAGCCAAGATTTACCGTCTT+TGG | 0.203558 | 2_4:-18466963 | None:intergenic |
AACCCATTTAATGTGAATTT+AGG | 0.205428 | 2_4:+18462662 | Msa0319130:five_prime_UTR |
ACACCCATCAACATTATTAT+TGG | 0.217687 | 2_4:+18466675 | Msa0319130:CDS |
CTATAACTTAATACATTAAT+AGG | 0.258059 | 2_4:+18467003 | Msa0319130:three_prime_UTR |
TAGATATAGCTTCCATTATA+AGG | 0.267054 | 2_4:-18464450 | None:intergenic |
TCATCATCACTTAGAGAAAA+AGG | 0.267733 | 2_4:-18463662 | None:intergenic |
TATGGAAGAGCAAATAAAAT+TGG | 0.273546 | 2_4:-18467073 | None:intergenic |
GGACATGTAGAAGATTCTTT+TGG | 0.291674 | 2_4:+18467024 | Msa0319130:three_prime_UTR |
GTATTCTGTAGGACCATTAC+TGG | 0.323222 | 2_4:+18465579 | Msa0319130:intron |
AATGAAAAGGGTGCATTATC+AGG | 0.328121 | 2_4:+18463604 | Msa0319130:CDS |
GATTACATATGATATTATTT+GGG | 0.336628 | 2_4:+18467046 | Msa0319130:three_prime_UTR |
AGCCAAGATTTACCGTCTTT+GGG | 0.343837 | 2_4:-18466962 | None:intergenic |
TCAAGCATGGGGTGGGTAAA+TGG | 0.345523 | 2_4:+18463342 | Msa0319130:CDS |
CCTTCCAATAATAATGTTGA+TGG | 0.370851 | 2_4:-18466679 | None:intergenic |
TATAAAACATGGTTAAATTC+AGG | 0.375074 | 2_4:-18463383 | None:intergenic |
TTATTGGAAGGGAGGCAAAA+AGG | 0.396790 | 2_4:+18466691 | Msa0319130:CDS |
TCGGTCAAATGTTGATCTAA+AGG | 0.406182 | 2_4:+18463409 | Msa0319130:CDS |
AATACACGAGGACAACTCTA+TGG | 0.413485 | 2_4:+18463631 | Msa0319130:CDS |
GTCCTAAATTCACATTAAAT+GGG | 0.419607 | 2_4:-18462664 | None:intergenic |
GGGTTGTTGGATAGGATAAA+TGG | 0.426577 | 2_4:+18463525 | Msa0319130:intron |
TTCAGGTGAAGCGCAGGTAT+AGG | 0.433823 | 2_4:+18466617 | Msa0319130:intron |
TTCTAATTCTAAATCGATCT+CGG | 0.439248 | 2_4:-18466758 | None:intergenic |
CACCCAAAGACGGTAAATCT+TGG | 0.442023 | 2_4:+18466960 | Msa0319130:exon |
CTCTTCAGCCTCCGCCATGA+GGG | 0.446885 | 2_4:-18466848 | None:intergenic |
TTCTAAATCGATCTCGGACT+TGG | 0.447008 | 2_4:-18466752 | None:intergenic |
TTGTAGAAGCTGAAAGGAAA+AGG | 0.451081 | 2_4:+18466923 | Msa0319130:CDS |
GAGGAATCCGCGCTTAAAGC+TGG | 0.455746 | 2_4:+18463314 | Msa0319130:CDS |
CAGGTTGGATAACCTTATAA+TGG | 0.457504 | 2_4:+18464438 | Msa0319130:intron |
GGAGGCAGAGGCTGCAGAAG+CGG | 0.467500 | 2_4:+18466879 | Msa0319130:CDS |
CTTCCTCTGTCTGAATATGC+TGG | 0.476422 | 2_4:-18466652 | None:intergenic |
AGCCAAAGGGAGCAATGAAA+AGG | 0.479925 | 2_4:+18463591 | Msa0319130:CDS |
CCTCATGGCGGAGGCTGAAG+AGG | 0.487598 | 2_4:+18466849 | Msa0319130:CDS |
AACCATTGCTTCTTTCATTG+AGG | 0.488576 | 2_4:+18464504 | Msa0319130:CDS |
TGCTCGAGCAGTTGCTGAAG+CGG | 0.494217 | 2_4:+18466822 | Msa0319130:CDS |
CTGAAGTATCTTACATCTCG+TGG | 0.499992 | 2_4:+18465638 | Msa0319130:CDS |
GGCAGAGGCTGCAGAAGCGG+AGG | 0.501552 | 2_4:+18466882 | Msa0319130:CDS |
AGCGGAAGCCCTCATGGCGG+AGG | 0.503203 | 2_4:+18466840 | Msa0319130:CDS |
CCTCTTCAGCCTCCGCCATG+AGG | 0.504586 | 2_4:-18466849 | None:intergenic |
TGTATTATGCCCTCGCAAGC+AGG | 0.507530 | 2_4:-18467099 | None:intergenic |
CCTCACCGCTGCGTTGTGAT+CGG | 0.511101 | 2_4:-18462735 | None:intergenic |
TGCTGAAGCGGAAGCCCTCA+TGG | 0.511274 | 2_4:+18466834 | Msa0319130:CDS |
ATAGAGTTGTCCTCGTGTAT+TGG | 0.517777 | 2_4:-18463629 | None:intergenic |
GGCTGCCTCTTGTGCAGACA+TGG | 0.522460 | 2_4:-18466791 | None:intergenic |
ATATCTAGCTTGAATGAACT+TGG | 0.526305 | 2_4:+18464466 | Msa0319130:CDS |
ATCTCGTGGAAAACTGATCA+AGG | 0.527774 | 2_4:+18465652 | Msa0319130:CDS |
AACTGCTCGAGCAGCACATG+CGG | 0.528875 | 2_4:-18466812 | None:intergenic |
TTCCATAAAACCTGCTTGCG+AGG | 0.531201 | 2_4:+18467089 | Msa0319130:three_prime_UTR |
GGCAAGTGGATGGGCTTCGA+GGG | 0.532126 | 2_4:+18463565 | Msa0319130:CDS |
TATTCTGTAGGACCATTACT+GGG | 0.533689 | 2_4:+18465580 | Msa0319130:intron |
AAATCGATCTCGGACTTGGT+AGG | 0.533919 | 2_4:-18466748 | None:intergenic |
TTATATTTCAGGTGAAGCGC+AGG | 0.535455 | 2_4:+18466611 | Msa0319130:intron |
AAGCTGGAGTTATCAAGCAT+GGG | 0.537538 | 2_4:+18463330 | Msa0319130:CDS |
CTGTCTGAATATGCTGGAGT+AGG | 0.541994 | 2_4:-18466646 | None:intergenic |
TGGCAAGTGGATGGGCTTCG+AGG | 0.542668 | 2_4:+18463564 | Msa0319130:CDS |
CCATCAACATTATTATTGGA+AGG | 0.543532 | 2_4:+18466679 | Msa0319130:CDS |
AATCGATCTCGGACTTGGTA+GGG | 0.545887 | 2_4:-18466747 | None:intergenic |
AGAGGCAACAAAGGAGGCAG+AGG | 0.547850 | 2_4:+18466867 | Msa0319130:CDS |
AGTCAGCAGGTGCCCAGTAA+TGG | 0.551122 | 2_4:-18465592 | None:intergenic |
AAAGCTGGAGTTATCAAGCA+TGG | 0.554090 | 2_4:+18463329 | Msa0319130:CDS |
TCCATAAAACCTGCTTGCGA+GGG | 0.556748 | 2_4:+18467090 | Msa0319130:three_prime_UTR |
CAACATTATTATTGGAAGGG+AGG | 0.564310 | 2_4:+18466683 | Msa0319130:CDS |
CATCAACATTATTATTGGAA+GGG | 0.566044 | 2_4:+18466680 | Msa0319130:CDS |
AAGGTCCATGTCTGCACAAG+AGG | 0.566181 | 2_4:+18466786 | Msa0319130:CDS |
GCCAAAGGGAGCAATGAAAA+GGG | 0.571330 | 2_4:+18463592 | Msa0319130:CDS |
TACCTCAATGAAAGAAGCAA+TGG | 0.571520 | 2_4:-18464506 | None:intergenic |
TCTAGCTTGAATGAACTTGG+TGG | 0.579223 | 2_4:+18464469 | Msa0319130:CDS |
TGAGCGTGATGGCAAGTGGA+TGG | 0.581001 | 2_4:+18463555 | Msa0319130:CDS |
GAGCGTGATGGCAAGTGGAT+GGG | 0.581966 | 2_4:+18463556 | Msa0319130:CDS |
GGAGTTATCAAGCATGGGGT+GGG | 0.587974 | 2_4:+18463335 | Msa0319130:CDS |
CTTCCAATAATAATGTTGAT+GGG | 0.591104 | 2_4:-18466678 | None:intergenic |
TTAGATCAACATTTGACCGA+AGG | 0.594489 | 2_4:-18463406 | None:intergenic |
GGAGGCTGAAGAGGCAACAA+AGG | 0.596715 | 2_4:+18466858 | Msa0319130:CDS |
TGGAGTTATCAAGCATGGGG+TGG | 0.597697 | 2_4:+18463334 | Msa0319130:CDS |
GGCTTCGAGGGAGAAGCCAA+AGG | 0.598632 | 2_4:+18463577 | Msa0319130:CDS |
GGCTGAAGAGGCAACAAAGG+AGG | 0.605389 | 2_4:+18466861 | Msa0319130:CDS |
ATGGCGAAATTTGAGCGTGA+TGG | 0.606348 | 2_4:+18463544 | Msa0319130:CDS |
TAGGGATATTGCTCTCATCC+CGG | 0.608587 | 2_4:-18466729 | None:intergenic |
AGAAGCGGAGGCAGATGCAA+TGG | 0.616552 | 2_4:+18466894 | Msa0319130:CDS |
ATTAAGTTATAGTATGACAA+AGG | 0.618209 | 2_4:-18466992 | None:intergenic |
AGCTGAAAGGAAAAGGCTGA+AGG | 0.619969 | 2_4:+18466930 | Msa0319130:CDS |
GCTTCGAGGGAGAAGCCAAA+GGG | 0.621979 | 2_4:+18463578 | Msa0319130:CDS |
GGTTAAATTCAGGATCCTTG+AGG | 0.623114 | 2_4:-18463373 | None:intergenic |
AATTTGAGCGTGATGGCAAG+TGG | 0.631289 | 2_4:+18463551 | Msa0319130:CDS |
ATATCTCTTGAAACTTGAAG+AGG | 0.637010 | 2_4:-18463701 | None:intergenic |
TTGACCGAAGGTATAAAACA+TGG | 0.643379 | 2_4:-18463394 | None:intergenic |
CCGATCACAACGCAGCGGTG+AGG | 0.645405 | 2_4:+18462735 | Msa0319130:five_prime_UTR |
AGCTGGAGTTATCAAGCATG+GGG | 0.657193 | 2_4:+18463331 | Msa0319130:CDS |
GATAACTCCAGCTTTAAGCG+CGG | 0.673274 | 2_4:-18463321 | None:intergenic |
CAGCGCCGATCACAACGCAG+CGG | 0.700024 | 2_4:+18462730 | Msa0319130:five_prime_UTR |
ACTCCAGCATATTCAGACAG+AGG | 0.701760 | 2_4:+18466649 | Msa0319130:CDS |
TAAATGGCGTACGATCCTCA+AGG | 0.711423 | 2_4:+18463358 | Msa0319130:CDS |
TTATCAGGCACCAATACACG+AGG | 0.743899 | 2_4:+18463619 | Msa0319130:CDS |
TGAAGCGGAAGCCCTCATGG+CGG | 0.749745 | 2_4:+18466837 | Msa0319130:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAATAAAATAAAATAATT+GGG | - | chr2_4:18463769-18463788 | None:intergenic | 0.0% |
!!! | ATTTTTTATAGATTTTGTTT+TGG | + | chr2_4:18462893-18462912 | Msa0319130:intron | 10.0% |
!!! | AATTTTTATAGATTTTGTTT+TGG | + | chr2_4:18462981-18463000 | Msa0319130:intron | 10.0% |
!! | AATATCTTAGAAAATTTATT+GGG | + | chr2_4:18464675-18464694 | Msa0319130:intron | 10.0% |
!! | AATATCTTAGAAAATTTATT+GGG | + | chr2_4:18464675-18464694 | Msa0319130:intron | 10.0% |
!!! | ATTTAGAATTAGAAAAAATA+AGG | + | chr2_4:18466767-18466786 | Msa0319130:CDS | 10.0% |
!!! | TTTATACCTATGATTTTTTT+GGG | - | chr2_4:18462640-18462659 | None:intergenic | 15.0% |
!!! | ATTTATACCTATGATTTTTT+TGG | - | chr2_4:18462641-18462660 | None:intergenic | 15.0% |
!!! | ATTTTGTTTTGGAATTTTTT+AGG | + | chr2_4:18462904-18462923 | Msa0319130:intron | 15.0% |
!!! | TTTTGTTTTGGAATTTTTTA+GGG | + | chr2_4:18462905-18462924 | Msa0319130:intron | 15.0% |
!!! | AATTTTTTAGGGTTTTTTTT+TGG | + | chr2_4:18462916-18462935 | Msa0319130:intron | 15.0% |
!!! | ATTTTTTAGGGTTTTTTTTT+GGG | + | chr2_4:18462917-18462936 | Msa0319130:intron | 15.0% |
!! | GATATAGAGTATAATTATTT+CGG | + | chr2_4:18463043-18463062 | Msa0319130:intron | 15.0% |
!! | TAAATAAATGATTCCTTTAT+AGG | - | chr2_4:18464401-18464420 | None:intergenic | 15.0% |
!! | GAATATCTTAGAAAATTTAT+TGG | + | chr2_4:18464674-18464693 | Msa0319130:intron | 15.0% |
!! | GAATATCTTAGAAAATTTAT+TGG | + | chr2_4:18464674-18464693 | Msa0319130:intron | 15.0% |
!!! | AATTTGAGATTTTATTTCAT+GGG | + | chr2_4:18466581-18466600 | Msa0319130:intron | 15.0% |
!! | CTATAACTTAATACATTAAT+AGG | + | chr2_4:18467003-18467022 | Msa0319130:three_prime_UTR | 15.0% |
!! | GATTACATATGATATTATTT+GGG | + | chr2_4:18467046-18467065 | Msa0319130:three_prime_UTR | 15.0% |
!!! | TTTTTTAGGGTTTTTTTTTG+GGG | + | chr2_4:18462918-18462937 | Msa0319130:intron | 20.0% |
!! | AAACTAAAACTTTCCTATAT+GGG | - | chr2_4:18463109-18463128 | None:intergenic | 20.0% |
!! | AAAACTAAAACTTTCCTATA+TGG | - | chr2_4:18463110-18463129 | None:intergenic | 20.0% |
!!! | TATAGGAAAGTTTTAGTTTT+AGG | + | chr2_4:18463110-18463129 | Msa0319130:intron | 20.0% |
!! | ATTTGATGTATTTATGATGT+TGG | + | chr2_4:18463224-18463243 | Msa0319130:intron | 20.0% |
!! | TATAAAACATGGTTAAATTC+AGG | - | chr2_4:18463386-18463405 | None:intergenic | 20.0% |
!! | GTAATGAATTGAATTAATGT+TGG | + | chr2_4:18463468-18463487 | Msa0319130:intron | 20.0% |
!! | TATTTATCTTGATCAACTAT+TGG | + | chr2_4:18464168-18464187 | Msa0319130:intron | 20.0% |
!!! | AAATAATTTTATAGTGCAGT+CGG | + | chr2_4:18464229-18464248 | Msa0319130:intron | 20.0% |
!! | TTTGTACTAATCATAGAATA+TGG | - | chr2_4:18464709-18464728 | None:intergenic | 20.0% |
!! | TTTGTACTAATCATAGAATA+TGG | - | chr2_4:18464709-18464728 | None:intergenic | 20.0% |
!! | TTCTATGATTAGTACAAATA+TGG | + | chr2_4:18464711-18464730 | Msa0319130:intron | 20.0% |
!! | TCTATGATTAGTACAAATAT+GGG | + | chr2_4:18464800-18464819 | Msa0319130:intron | 20.0% |
!! | GATTGTAATTTATTACTCTA+GGG | - | chr2_4:18464993-18465012 | None:intergenic | 20.0% |
!! | TGATTGTAATTTATTACTCT+AGG | - | chr2_4:18464994-18465013 | None:intergenic | 20.0% |
!!! | ATTTTCTTCTATACAATTCT+AGG | - | chr2_4:18465061-18465080 | None:intergenic | 20.0% |
!!! | AATAACATCTAGTGTTTTTT+TGG | - | chr2_4:18465891-18465910 | None:intergenic | 20.0% |
!!! | ATACACATCTATTTGAAATA+GGG | + | chr2_4:18466310-18466329 | Msa0319130:intron | 20.0% |
!! | TTTAAGTCTACATTAGAAAA+TGG | - | chr2_4:18466437-18466456 | None:intergenic | 20.0% |
!! | TAAATGTATAAGACTAAATC+AGG | - | chr2_4:18466500-18466519 | None:intergenic | 20.0% |
!!! | CAATTTGAGATTTTATTTCA+TGG | + | chr2_4:18466580-18466599 | Msa0319130:intron | 20.0% |
!! | ATTAAGTTATAGTATGACAA+AGG | - | chr2_4:18466995-18467014 | None:intergenic | 20.0% |
!! | GGATTACATATGATATTATT+TGG | + | chr2_4:18467045-18467064 | Msa0319130:three_prime_UTR | 20.0% |
!!! | TTCTAATCATTTTAGATGAT+CGG | - | chr2_4:18467140-18467159 | None:intergenic | 20.0% |
! | AAATGACCCAAAAAAATCAT+AGG | + | chr2_4:18462631-18462650 | Msa0319130:five_prime_UTR | 25.0% |
! | AACCCATTTAATGTGAATTT+AGG | + | chr2_4:18462662-18462681 | Msa0319130:five_prime_UTR | 25.0% |
! | GTCCTAAATTCACATTAAAT+GGG | - | chr2_4:18462667-18462686 | None:intergenic | 25.0% |
! | TGTCCTAAATTCACATTAAA+TGG | - | chr2_4:18462668-18462687 | None:intergenic | 25.0% |
!!! | GTTTCTTGTGTTTTTGATTT+AGG | - | chr2_4:18462706-18462725 | None:intergenic | 25.0% |
! | TATGAAATGAAATCGGAAAA+AGG | - | chr2_4:18462777-18462796 | None:intergenic | 25.0% |
! | ATCGGAATATGAAATGAAAT+CGG | - | chr2_4:18462784-18462803 | None:intergenic | 25.0% |
!!! | TTTTTAGGGTTTTTTTTTGG+GGG | + | chr2_4:18462919-18462938 | Msa0319130:intron | 25.0% |
!!! | CTTTGATCCAATGTATTTTT+TGG | + | chr2_4:18463080-18463099 | Msa0319130:intron | 25.0% |
!!! | TATTTTTTGGTTACCCATAT+AGG | + | chr2_4:18463093-18463112 | Msa0319130:intron | 25.0% |
! | ATAAAACAATCAAAACTCGT+AGG | - | chr2_4:18463167-18463186 | None:intergenic | 25.0% |
!! | TTAACCATGTTTTATACCTT+CGG | + | chr2_4:18463390-18463409 | Msa0319130:CDS | 25.0% |
!! | GCTTATTTATTCATTTGTTG+TGG | + | chr2_4:18463446-18463465 | Msa0319130:intron | 25.0% |
! | ATTAAAATTCCACTATGCTA+TGG | - | chr2_4:18463849-18463868 | None:intergenic | 25.0% |
! | TAGATTCTCTGATTGAAATA+CGG | + | chr2_4:18463928-18463947 | Msa0319130:intron | 25.0% |
! | AATCCTATTCAATTCTTGAT+GGG | + | chr2_4:18463954-18463973 | Msa0319130:intron | 25.0% |
! | CAAAACAAGATAATGAAATC+AGG | - | chr2_4:18464336-18464355 | None:intergenic | 25.0% |
! | TAGATATAGCTTCCATTATA+AGG | - | chr2_4:18464453-18464472 | None:intergenic | 25.0% |
! | ATCTTAGAAAATTTATTGGG+AGG | + | chr2_4:18464678-18464697 | Msa0319130:intron | 25.0% |
! | ATCTTAGAAAATTTATTGGG+AGG | + | chr2_4:18464678-18464697 | Msa0319130:intron | 25.0% |
! | TGAATTGTTATATGGTCATA+TGG | + | chr2_4:18464876-18464895 | Msa0319130:intron | 25.0% |
! | GATATTGTCTTGTAAATGAT+AGG | - | chr2_4:18465026-18465045 | None:intergenic | 25.0% |
!! | TTCATCATTTTGTATTCTGT+AGG | + | chr2_4:18465568-18465587 | Msa0319130:intron | 25.0% |
! | TATTGTAAGTTTGCATTAGA+TGG | - | chr2_4:18465713-18465732 | None:intergenic | 25.0% |
! | AAAAAACTTAAGACTCACAT+TGG | + | chr2_4:18465995-18466014 | Msa0319130:intron | 25.0% |
! | TATACCAATTATATGACTGT+AGG | + | chr2_4:18466098-18466117 | Msa0319130:intron | 25.0% |
! | TAGCTGAATAAAATAATCTC+AGG | + | chr2_4:18466162-18466181 | Msa0319130:intron | 25.0% |
! | AATAAAATAATCTCAGGACA+AGG | + | chr2_4:18466168-18466187 | Msa0319130:intron | 25.0% |
! | ATAAAATAATCTCAGGACAA+GGG | + | chr2_4:18466169-18466188 | Msa0319130:intron | 25.0% |
!! | CATACACATCTATTTGAAAT+AGG | + | chr2_4:18466309-18466328 | Msa0319130:intron | 25.0% |
!! | TACACATCTATTTGAAATAG+GGG | + | chr2_4:18466311-18466330 | Msa0319130:intron | 25.0% |
! | CATTTATTGTGAGCTATATT+TGG | + | chr2_4:18466514-18466533 | Msa0319130:intron | 25.0% |
!!! | TGGGTTGAATTTTATATTTC+AGG | + | chr2_4:18466600-18466619 | Msa0319130:intron | 25.0% |
! | CTTCCAATAATAATGTTGAT+GGG | - | chr2_4:18466681-18466700 | None:intergenic | 25.0% |
! | CATCAACATTATTATTGGAA+GGG | + | chr2_4:18466680-18466699 | Msa0319130:CDS | 25.0% |
! | TTCTAATTCTAAATCGATCT+CGG | - | chr2_4:18466761-18466780 | None:intergenic | 25.0% |
! | TATGGAAGAGCAAATAAAAT+TGG | - | chr2_4:18467076-18467095 | None:intergenic | 25.0% |
TGAAATCGGAAAAAGGAAAT+CGG | - | chr2_4:18462770-18462789 | None:intergenic | 30.0% | |
TGGGTAACCAAAAAATACAT+TGG | - | chr2_4:18463090-18463109 | None:intergenic | 30.0% | |
! | ATTTTCTGTATTGCTCGAAA+TGG | + | chr2_4:18463262-18463281 | Msa0319130:exon | 30.0% |
! | TTTTCTGTATTGCTCGAAAT+GGG | + | chr2_4:18463263-18463282 | Msa0319130:exon | 30.0% |
! | ACCTTTAGATCCAGATTTTA+CGG | - | chr2_4:18463495-18463514 | None:intergenic | 30.0% |
ATCTAAAGGTTTCGTTATGT+GGG | + | chr2_4:18463505-18463524 | Msa0319130:intron | 30.0% | |
TCATCATCACTTAGAGAAAA+AGG | - | chr2_4:18463665-18463684 | None:intergenic | 30.0% | |
ATATCTCTTGAAACTTGAAG+AGG | - | chr2_4:18463704-18463723 | None:intergenic | 30.0% | |
! | ACCTTATACTAGAGCTTTTT+GGG | - | chr2_4:18463742-18463761 | None:intergenic | 30.0% |
! | AACCTTATACTAGAGCTTTT+TGG | - | chr2_4:18463743-18463762 | None:intergenic | 30.0% |
! | AAAAAGCTCTAGTATAAGGT+TGG | + | chr2_4:18463742-18463761 | Msa0319130:intron | 30.0% |
! | AAAAGCTCTAGTATAAGGTT+GGG | + | chr2_4:18463743-18463762 | Msa0319130:intron | 30.0% |
AGATTCTCTGATTGAAATAC+GGG | + | chr2_4:18463929-18463948 | Msa0319130:intron | 30.0% | |
GAATCCTATTCAATTCTTGA+TGG | + | chr2_4:18463953-18463972 | Msa0319130:intron | 30.0% | |
! | GTTTTGCGTGAATCATATAA+AGG | + | chr2_4:18464350-18464369 | Msa0319130:intron | 30.0% |
TAACTGTGTTTACGTTATAC+AGG | + | chr2_4:18464419-18464438 | Msa0319130:intron | 30.0% | |
! | ATATCTAGCTTGAATGAACT+TGG | + | chr2_4:18464466-18464485 | Msa0319130:CDS | 30.0% |
AAGCAGAACAAATAAAAGTG+TGG | - | chr2_4:18464549-18464568 | None:intergenic | 30.0% | |
! | CATGTTGTTATTCTAACTTC+AGG | + | chr2_4:18464585-18464604 | Msa0319130:intron | 30.0% |
CTACCTTGTGAATTGTTATA+TGG | + | chr2_4:18464868-18464887 | Msa0319130:intron | 30.0% | |
TGACCATATAACAATTCACA+AGG | - | chr2_4:18464874-18464893 | None:intergenic | 30.0% | |
ATTGTTATATGGTCATATGG+AGG | + | chr2_4:18464879-18464898 | Msa0319130:intron | 30.0% | |
!! | CAATTCTAGGACTATAAACA+AGG | - | chr2_4:18465048-18465067 | None:intergenic | 30.0% |
!! | TTTGATTTTGCTAGCTAAGT+TGG | + | chr2_4:18465178-18465197 | Msa0319130:intron | 30.0% |
! | TTGATTTTGCTAGCTAAGTT+GGG | + | chr2_4:18465179-18465198 | Msa0319130:intron | 30.0% |
TGAAGCTAATTTGAGCTAAT+TGG | - | chr2_4:18465274-18465293 | None:intergenic | 30.0% | |
TTGAAATAGCATCATAGATC+AGG | - | chr2_4:18465399-18465418 | None:intergenic | 30.0% | |
AAGTGTTATAGCATTGCATT+TGG | + | chr2_4:18465483-18465502 | Msa0319130:intron | 30.0% | |
!! | AAGATGCTTGGATTAGTATT+AGG | + | chr2_4:18465764-18465783 | Msa0319130:intron | 30.0% |
TCTCACATTAGCTAGAAATA+AGG | + | chr2_4:18465798-18465817 | Msa0319130:intron | 30.0% | |
AACTTGGTTCATGGAATATA+TGG | - | chr2_4:18465941-18465960 | None:intergenic | 30.0% | |
!! | CGACATTAGAAGTTTTATGT+AGG | - | chr2_4:18466033-18466052 | None:intergenic | 30.0% |
ACATAAAACTTCTAATGTCG+CGG | + | chr2_4:18466033-18466052 | Msa0319130:intron | 30.0% | |
TAAAATAATCTCAGGACAAG+GGG | + | chr2_4:18466170-18466189 | Msa0319130:intron | 30.0% | |
!!! | AGTAGTGACTTTTTTCTTGA+AGG | + | chr2_4:18466241-18466260 | Msa0319130:intron | 30.0% |
AAGAAAATTACAACTCGACA+AGG | - | chr2_4:18466280-18466299 | None:intergenic | 30.0% | |
! | TTGGATGCTATTCTCATTTT+TGG | + | chr2_4:18466533-18466552 | Msa0319130:intron | 30.0% |
ACACCCATCAACATTATTAT+TGG | + | chr2_4:18466675-18466694 | Msa0319130:CDS | 30.0% | |
CCTTCCAATAATAATGTTGA+TGG | - | chr2_4:18466682-18466701 | None:intergenic | 30.0% | |
CCATCAACATTATTATTGGA+AGG | + | chr2_4:18466679-18466698 | Msa0319130:CDS | 30.0% | |
! | AAGGCTCTATGAAATTTTAC+CGG | + | chr2_4:18466710-18466729 | Msa0319130:CDS | 30.0% |
!!! | TTTTTTTTGGGGGAGTTACT+AGG | + | chr2_4:18462929-18462948 | Msa0319130:intron | 35.0% |
!!! | TTTAGTTTTAGGCTCAGTCA+AGG | + | chr2_4:18463121-18463140 | Msa0319130:intron | 35.0% |
TTATGACTATGTAGAGCTCA+TGG | + | chr2_4:18463183-18463202 | Msa0319130:intron | 35.0% | |
!! | TCTTCTGACCATTTTTGCTT+AGG | - | chr2_4:18463293-18463312 | None:intergenic | 35.0% |
! | TTGACCGAAGGTATAAAACA+TGG | - | chr2_4:18463397-18463416 | None:intergenic | 35.0% |
TTAGATCAACATTTGACCGA+AGG | - | chr2_4:18463409-18463428 | None:intergenic | 35.0% | |
TCGGTCAAATGTTGATCTAA+AGG | + | chr2_4:18463409-18463428 | Msa0319130:CDS | 35.0% | |
TAATGTTGGACCGTAAAATC+TGG | + | chr2_4:18463482-18463501 | Msa0319130:intron | 35.0% | |
ACCGTAAAATCTGGATCTAA+AGG | + | chr2_4:18463491-18463510 | Msa0319130:intron | 35.0% | |
GATCTAAAGGTTTCGTTATG+TGG | + | chr2_4:18463504-18463523 | Msa0319130:intron | 35.0% | |
! | AATGAAAAGGGTGCATTATC+AGG | + | chr2_4:18463604-18463623 | Msa0319130:CDS | 35.0% |
TCAATCAGAGAATCTAACTG+AGG | - | chr2_4:18463924-18463943 | None:intergenic | 35.0% | |
GATCCCATCAAGAATTGAAT+AGG | - | chr2_4:18463960-18463979 | None:intergenic | 35.0% | |
GAAATTATCTTCCACTTGAG+GGG | - | chr2_4:18464011-18464030 | None:intergenic | 35.0% | |
CGAAATTATCTTCCACTTGA+GGG | - | chr2_4:18464012-18464031 | None:intergenic | 35.0% | |
TCGAAATTATCTTCCACTTG+AGG | - | chr2_4:18464013-18464032 | None:intergenic | 35.0% | |
AGATGTTCGAACGTAATCAA+GGG | + | chr2_4:18464032-18464051 | Msa0319130:intron | 35.0% | |
!! | GTTGATCGGCTTTTTGAAAA+AGG | + | chr2_4:18464108-18464127 | Msa0319130:intron | 35.0% |
TCGGCAATTGTCTTTCAATT+AGG | + | chr2_4:18464248-18464267 | Msa0319130:intron | 35.0% | |
CGGCAATTGTCTTTCAATTA+GGG | + | chr2_4:18464249-18464268 | Msa0319130:intron | 35.0% | |
ATGAATGATCTTAACACGCT+TGG | - | chr2_4:18464289-18464308 | None:intergenic | 35.0% | |
CAAGAATACAAGGAAAGCAA+TGG | - | chr2_4:18464313-18464332 | None:intergenic | 35.0% | |
TGAAATCAGGCAAGAATACA+AGG | - | chr2_4:18464323-18464342 | None:intergenic | 35.0% | |
! | GTTTTGCTTGCATCCTATAA+AGG | + | chr2_4:18464385-18464404 | Msa0319130:intron | 35.0% |
TGTGTTTACGTTATACAGGT+TGG | + | chr2_4:18464423-18464442 | Msa0319130:intron | 35.0% | |
! | CAGGTTGGATAACCTTATAA+TGG | + | chr2_4:18464438-18464457 | Msa0319130:intron | 35.0% |
AACCATTGCTTCTTTCATTG+AGG | + | chr2_4:18464504-18464523 | Msa0319130:CDS | 35.0% | |
TACCTCAATGAAAGAAGCAA+TGG | - | chr2_4:18464509-18464528 | None:intergenic | 35.0% | |
ATAGGTGAGATCATCTTAGT+GGG | - | chr2_4:18464957-18464976 | None:intergenic | 35.0% | |
AATAGGTGAGATCATCTTAG+TGG | - | chr2_4:18464958-18464977 | None:intergenic | 35.0% | |
ACTAAGATGATCTCACCTAT+TGG | + | chr2_4:18464957-18464976 | Msa0319130:intron | 35.0% | |
CTAAGATGATCTCACCTATT+GGG | + | chr2_4:18464958-18464977 | Msa0319130:intron | 35.0% | |
! | TGATTTTGCTAGCTAAGTTG+GGG | + | chr2_4:18465180-18465199 | Msa0319130:intron | 35.0% |
! | CAGAGCTAGTTTGAAAAAGA+AGG | + | chr2_4:18465214-18465233 | Msa0319130:intron | 35.0% |
CTCACTTGTCTTCAACATAA+TGG | - | chr2_4:18465251-18465270 | None:intergenic | 35.0% | |
! | TTAGCTCAAATTAGCTTCAG+TGG | + | chr2_4:18465275-18465294 | Msa0319130:intron | 35.0% |
GTTATAGCATTGCATTTGGT+TGG | + | chr2_4:18465487-18465506 | Msa0319130:intron | 35.0% | |
TATTCTGTAGGACCATTACT+GGG | + | chr2_4:18465580-18465599 | Msa0319130:intron | 35.0% | |
!! | TTGCTTAACTCTAAGATGCT+TGG | + | chr2_4:18465752-18465771 | Msa0319130:intron | 35.0% |
AGTGTCTATCCAGACATTAT+TGG | + | chr2_4:18465911-18465930 | Msa0319130:intron | 35.0% | |
TTGGTTCATGGAATATATGG+TGG | - | chr2_4:18465938-18465957 | None:intergenic | 35.0% | |
ACACTAACAAACTTGGTTCA+TGG | - | chr2_4:18465950-18465969 | None:intergenic | 35.0% | |
!! | TGAACCAAGTTTGTTAGTGT+TGG | + | chr2_4:18465950-18465969 | Msa0319130:intron | 35.0% |
!! | GAACCAAGTTTGTTAGTGTT+GGG | + | chr2_4:18465951-18465970 | Msa0319130:intron | 35.0% |
!! | AACCAAGTTTGTTAGTGTTG+GGG | + | chr2_4:18465952-18465971 | Msa0319130:intron | 35.0% |
TTGTGTAATGTGTAGGGTTT+GGG | - | chr2_4:18466071-18466090 | None:intergenic | 35.0% | |
TTTGTGTAATGTGTAGGGTT+TGG | - | chr2_4:18466072-18466091 | None:intergenic | 35.0% | |
CAGAGTTTGTGTAATGTGTA+GGG | - | chr2_4:18466077-18466096 | None:intergenic | 35.0% | |
CAGACCTACAGTCATATAAT+TGG | - | chr2_4:18466105-18466124 | None:intergenic | 35.0% | |
TGTTTCTTATATACAGCCGT+TGG | + | chr2_4:18466377-18466396 | Msa0319130:intron | 35.0% | |
CAACATTATTATTGGAAGGG+AGG | + | chr2_4:18466683-18466702 | Msa0319130:CDS | 35.0% | |
! | AGGCTCTATGAAATTTTACC+GGG | + | chr2_4:18466711-18466730 | Msa0319130:CDS | 35.0% |
! | AAGCTTTTGTAGAAGCTGAA+AGG | + | chr2_4:18466917-18466936 | Msa0319130:CDS | 35.0% |
TTGTAGAAGCTGAAAGGAAA+AGG | + | chr2_4:18466923-18466942 | Msa0319130:CDS | 35.0% | |
! | GGACATGTAGAAGATTCTTT+TGG | + | chr2_4:18467024-18467043 | Msa0319130:three_prime_UTR | 35.0% |
ACTAGGAATTGTGACGACAA+AGG | + | chr2_4:18462946-18462965 | Msa0319130:intron | 40.0% | |
CTAGGAATTGTGACGACAAA+GGG | + | chr2_4:18462947-18462966 | Msa0319130:intron | 40.0% | |
AATTGTGACGACAAAGGGAA+TGG | + | chr2_4:18462952-18462971 | Msa0319130:intron | 40.0% | |
ATTGTGACGACAAAGGGAAT+GGG | + | chr2_4:18462953-18462972 | Msa0319130:intron | 40.0% | |
TGGGTGTTCCTAAGCAAAAA+TGG | + | chr2_4:18463282-18463301 | Msa0319130:CDS | 40.0% | |
GCAAAAATGGTCAGAAGAAG+AGG | + | chr2_4:18463295-18463314 | Msa0319130:CDS | 40.0% | |
AAAGCTGGAGTTATCAAGCA+TGG | + | chr2_4:18463329-18463348 | Msa0319130:CDS | 40.0% | |
AAGCTGGAGTTATCAAGCAT+GGG | + | chr2_4:18463330-18463349 | Msa0319130:CDS | 40.0% | |
GGTTAAATTCAGGATCCTTG+AGG | - | chr2_4:18463376-18463395 | None:intergenic | 40.0% | |
GGGTTGTTGGATAGGATAAA+TGG | + | chr2_4:18463525-18463544 | Msa0319130:intron | 40.0% | |
ATAGAGTTGTCCTCGTGTAT+TGG | - | chr2_4:18463632-18463651 | None:intergenic | 40.0% | |
AATACACGAGGACAACTCTA+TGG | + | chr2_4:18463631-18463650 | Msa0319130:CDS | 40.0% | |
AGAGATATGCCGCAAATTTC+TGG | + | chr2_4:18463716-18463735 | Msa0319130:CDS | 40.0% | |
!! | CTTTTTGGGCCAGAAATTTG+CGG | - | chr2_4:18463728-18463747 | None:intergenic | 40.0% |
! | GCCCAAAAAGCTCTAGTATA+AGG | + | chr2_4:18463738-18463757 | Msa0319130:CDS | 40.0% |
AAATAGCAGCCATAGCATAG+TGG | + | chr2_4:18463837-18463856 | Msa0319130:intron | 40.0% | |
TGATGGGATCAGATCAGAAA+CGG | + | chr2_4:18463970-18463989 | Msa0319130:intron | 40.0% | |
TTGCAAATTATCCCCTCAAG+TGG | + | chr2_4:18463997-18464016 | Msa0319130:intron | 40.0% | |
GAGATGTTCGAACGTAATCA+AGG | + | chr2_4:18464031-18464050 | Msa0319130:intron | 40.0% | |
GACACTTTACCACTGTTGAT+CGG | + | chr2_4:18464094-18464113 | Msa0319130:intron | 40.0% | |
TTCAAAAAGCCGATCAACAG+TGG | - | chr2_4:18464106-18464125 | None:intergenic | 40.0% | |
!! | CGGCTTTTTGAAAAAGGATG+AGG | + | chr2_4:18464114-18464133 | Msa0319130:intron | 40.0% |
AATACTCGCATCTATCACCT+AGG | + | chr2_4:18464192-18464211 | Msa0319130:intron | 40.0% | |
ATACTCGCATCTATCACCTA+GGG | + | chr2_4:18464193-18464212 | Msa0319130:intron | 40.0% | |
TTTGTTCTATTCTGCACCCT+AGG | - | chr2_4:18464212-18464231 | None:intergenic | 40.0% | |
! | TCTAGCTTGAATGAACTTGG+TGG | + | chr2_4:18464469-18464488 | Msa0319130:CDS | 40.0% |
ATATGGTCATATGGAGGTCA+TGG | + | chr2_4:18464885-18464904 | Msa0319130:intron | 40.0% | |
TATGGTCATATGGAGGTCAT+GGG | + | chr2_4:18464886-18464905 | Msa0319130:intron | 40.0% | |
TAGGTGAGATCATCTTAGTG+GGG | - | chr2_4:18464956-18464975 | None:intergenic | 40.0% | |
!! | AAACTAGCTCTGCTTCATGA+TGG | - | chr2_4:18465206-18465225 | None:intergenic | 40.0% |
GTATTCTGTAGGACCATTAC+TGG | + | chr2_4:18465579-18465598 | Msa0319130:intron | 40.0% | |
! | CTGAAGTATCTTACATCTCG+TGG | + | chr2_4:18465638-18465657 | Msa0319130:CDS | 40.0% |
ATCTCGTGGAAAACTGATCA+AGG | + | chr2_4:18465652-18465671 | Msa0319130:CDS | 40.0% | |
! | TAGGCTTTATAAGCTCTGCT+TGG | - | chr2_4:18465824-18465843 | None:intergenic | 40.0% |
AAGCAGAGCTTATAAAGCCT+AGG | + | chr2_4:18465823-18465842 | Msa0319130:intron | 40.0% | |
GCAATCCTCACCATAGAAAT+TGG | + | chr2_4:18465845-18465864 | Msa0319130:intron | 40.0% | |
GCAAACCAATTTCTATGGTG+AGG | - | chr2_4:18465853-18465872 | None:intergenic | 40.0% | |
!! | CACCATAGAAATTGGTTTGC+TGG | + | chr2_4:18465853-18465872 | Msa0319130:intron | 40.0% |
CTCCAGCAAACCAATTTCTA+TGG | - | chr2_4:18465858-18465877 | None:intergenic | 40.0% | |
TATGGTGGTCCAATAATGTC+TGG | - | chr2_4:18465923-18465942 | None:intergenic | 40.0% | |
!! | ACCAAGTTTGTTAGTGTTGG+GGG | + | chr2_4:18465953-18465972 | Msa0319130:intron | 40.0% |
TGTGTAATGTGTAGGGTTTG+GGG | - | chr2_4:18466070-18466089 | None:intergenic | 40.0% | |
CCAGAGTTTGTGTAATGTGT+AGG | - | chr2_4:18466078-18466097 | None:intergenic | 40.0% | |
CCTACACATTACACAAACTC+TGG | + | chr2_4:18466075-18466094 | Msa0319130:intron | 40.0% | |
!! | AGTGGAAAATGGGCTAGATA+TGG | + | chr2_4:18466134-18466153 | Msa0319130:intron | 40.0% |
GAGAGATGGTGAAACGAATA+AGG | + | chr2_4:18466198-18466217 | Msa0319130:intron | 40.0% | |
!! | TATTTGAAATAGGGGTGCTG+TGG | + | chr2_4:18466319-18466338 | Msa0319130:intron | 40.0% |
! | TTATATACAGCCGTTGGTTG+TGG | + | chr2_4:18466383-18466402 | Msa0319130:intron | 40.0% |
! | TATATACAGCCGTTGGTTGT+GGG | + | chr2_4:18466384-18466403 | Msa0319130:intron | 40.0% |
! | TTATATTTCAGGTGAAGCGC+AGG | + | chr2_4:18466611-18466630 | Msa0319130:intron | 40.0% |
TTATTGGAAGGGAGGCAAAA+AGG | + | chr2_4:18466691-18466710 | Msa0319130:CDS | 40.0% | |
TTCTAAATCGATCTCGGACT+TGG | - | chr2_4:18466755-18466774 | None:intergenic | 40.0% | |
AGGAGAAAAACACCCAAAGA+CGG | + | chr2_4:18466950-18466969 | Msa0319130:CDS | 40.0% | |
AGCCAAGATTTACCGTCTTT+GGG | - | chr2_4:18466965-18466984 | None:intergenic | 40.0% | |
AAGCCAAGATTTACCGTCTT+TGG | - | chr2_4:18466966-18466985 | None:intergenic | 40.0% | |
!!! | AGTTTTAGGCTCAGTCAAGG+TGG | + | chr2_4:18463124-18463143 | Msa0319130:intron | 45.0% |
!! | GTTTTAGGCTCAGTCAAGGT+GGG | + | chr2_4:18463125-18463144 | Msa0319130:intron | 45.0% |
!! | GATAACTCCAGCTTTAAGCG+CGG | - | chr2_4:18463324-18463343 | None:intergenic | 45.0% |
AGCTGGAGTTATCAAGCATG+GGG | + | chr2_4:18463331-18463350 | Msa0319130:CDS | 45.0% | |
TAAATGGCGTACGATCCTCA+AGG | + | chr2_4:18463358-18463377 | Msa0319130:CDS | 45.0% | |
! | GGTTTCGTTATGTGGGTTGT+TGG | + | chr2_4:18463512-18463531 | Msa0319130:intron | 45.0% |
! | CGTTATGTGGGTTGTTGGAT+AGG | + | chr2_4:18463517-18463536 | Msa0319130:intron | 45.0% |
ATGGCGAAATTTGAGCGTGA+TGG | + | chr2_4:18463544-18463563 | Msa0319130:CDS | 45.0% | |
AATTTGAGCGTGATGGCAAG+TGG | + | chr2_4:18463551-18463570 | Msa0319130:CDS | 45.0% | |
AGCCAAAGGGAGCAATGAAA+AGG | + | chr2_4:18463591-18463610 | Msa0319130:CDS | 45.0% | |
GCCAAAGGGAGCAATGAAAA+GGG | + | chr2_4:18463592-18463611 | Msa0319130:CDS | 45.0% | |
! | ACCCTTTTCATTGCTCCCTT+TGG | - | chr2_4:18463596-18463615 | None:intergenic | 45.0% |
TTATCAGGCACCAATACACG+AGG | + | chr2_4:18463619-18463638 | Msa0319130:CDS | 45.0% | |
! | GTCACTTTAGCAACCACACA+AGG | + | chr2_4:18464070-18464089 | Msa0319130:intron | 45.0% |
! | TGGTAAAGTGTCACCTTGTG+TGG | - | chr2_4:18464086-18464105 | None:intergenic | 45.0% |
TACACCAGCAAGCATATCAG+AGG | - | chr2_4:18464916-18464935 | None:intergenic | 45.0% | |
! | CTGATATGCTTGCTGGTGTA+AGG | + | chr2_4:18464916-18464935 | Msa0319130:intron | 45.0% |
AGATGATCTCACCTATTGGG+AGG | + | chr2_4:18464961-18464980 | Msa0319130:intron | 45.0% | |
TAACCAGGTTTCAGAAGGCA+TGG | - | chr2_4:18465337-18465356 | None:intergenic | 45.0% | |
CACAGTAACCAGGTTTCAGA+AGG | - | chr2_4:18465342-18465361 | None:intergenic | 45.0% | |
AACCTGGTTACTGTGTCTTG+TGG | + | chr2_4:18465347-18465366 | Msa0319130:intron | 45.0% | |
AACCACAAGACACAGTAACC+AGG | - | chr2_4:18465352-18465371 | None:intergenic | 45.0% | |
!!! | AGCAGCTTTTTGAAGTCAGC+AGG | - | chr2_4:18465608-18465627 | None:intergenic | 45.0% |
TTCTATGGTGAGGATTGCCT+AGG | - | chr2_4:18465843-18465862 | None:intergenic | 45.0% | |
!! | TGGTTTGCTGGAGTTGAATC+AGG | + | chr2_4:18465865-18465884 | Msa0319130:intron | 45.0% |
ACCCCCAACACTAACAAACT+TGG | - | chr2_4:18465957-18465976 | None:intergenic | 45.0% | |
ACTCACATTGGCGTGAGATA+AGG | + | chr2_4:18466007-18466026 | Msa0319130:intron | 45.0% | |
CTAATGTCGCGGCAAATCTT+AGG | + | chr2_4:18466044-18466063 | Msa0319130:intron | 45.0% | |
TGAGTTCGTGGAGTGGAAAA+TGG | + | chr2_4:18466123-18466142 | Msa0319130:intron | 45.0% | |
GAGTTCGTGGAGTGGAAAAT+GGG | + | chr2_4:18466124-18466143 | Msa0319130:intron | 45.0% | |
AATCTCAGGACAAGGGGATT+TGG | + | chr2_4:18466176-18466195 | Msa0319130:intron | 45.0% | |
CTGTCTGAATATGCTGGAGT+AGG | - | chr2_4:18466649-18466668 | None:intergenic | 45.0% | |
ACTCCAGCATATTCAGACAG+AGG | + | chr2_4:18466649-18466668 | Msa0319130:CDS | 45.0% | |
CTTCCTCTGTCTGAATATGC+TGG | - | chr2_4:18466655-18466674 | None:intergenic | 45.0% | |
TAGGGATATTGCTCTCATCC+CGG | - | chr2_4:18466732-18466751 | None:intergenic | 45.0% | |
! | AATCGATCTCGGACTTGGTA+GGG | - | chr2_4:18466750-18466769 | None:intergenic | 45.0% |
! | AAATCGATCTCGGACTTGGT+AGG | - | chr2_4:18466751-18466770 | None:intergenic | 45.0% |
AGCTGAAAGGAAAAGGCTGA+AGG | + | chr2_4:18466930-18466949 | Msa0319130:CDS | 45.0% | |
CACCCAAAGACGGTAAATCT+TGG | + | chr2_4:18466960-18466979 | Msa0319130:exon | 45.0% | |
TTCCATAAAACCTGCTTGCG+AGG | + | chr2_4:18467089-18467108 | Msa0319130:three_prime_UTR | 45.0% | |
TCCATAAAACCTGCTTGCGA+GGG | + | chr2_4:18467090-18467109 | Msa0319130:three_prime_UTR | 45.0% | |
!! | CAAAAATAAAATAAAATAAT+TGG | - | chr2_4:18463770-18463789 | None:intergenic | 5.0% |
!!! | TTATTTTTGTTTTTTTAATA+CGG | + | chr2_4:18463781-18463800 | Msa0319130:intron | 5.0% |
ACCGCATCACAGAATTGCGT+CGG | + | chr2_4:18462859-18462878 | Msa0319130:intron | 50.0% | |
TCCGACGCAATTCTGTGATG+CGG | - | chr2_4:18462863-18462882 | None:intergenic | 50.0% | |
TGGAGTTATCAAGCATGGGG+TGG | + | chr2_4:18463334-18463353 | Msa0319130:CDS | 50.0% | |
GGAGTTATCAAGCATGGGGT+GGG | + | chr2_4:18463335-18463354 | Msa0319130:CDS | 50.0% | |
TCAAGCATGGGGTGGGTAAA+TGG | + | chr2_4:18463342-18463361 | Msa0319130:CDS | 50.0% | |
TGAATCCTGACGCAAGAGTG+AGG | + | chr2_4:18464842-18464861 | Msa0319130:intron | 50.0% | |
ACAGCCTCTGATATGCTTGC+TGG | + | chr2_4:18464909-18464928 | Msa0319130:intron | 50.0% | |
!! | ACTCCATGCCTTCTGAAACC+TGG | + | chr2_4:18465331-18465350 | Msa0319130:intron | 50.0% |
TGACTGTAGGTCTGAGTTCG+TGG | + | chr2_4:18466111-18466130 | Msa0319130:intron | 50.0% | |
GACAAGGGGATTTGGAGAGA+TGG | + | chr2_4:18466184-18466203 | Msa0319130:intron | 50.0% | |
TTCAGGTGAAGCGCAGGTAT+AGG | + | chr2_4:18466617-18466636 | Msa0319130:intron | 50.0% | |
AAGGTCCATGTCTGCACAAG+AGG | + | chr2_4:18466786-18466805 | Msa0319130:CDS | 50.0% | |
TGTATTATGCCCTCGCAAGC+AGG | - | chr2_4:18467102-18467121 | None:intergenic | 50.0% | |
ATATTCCGATCTCCCTCGCG+TGG | + | chr2_4:18462794-18462813 | Msa0319130:intron | 55.0% | |
GTGATGCGGTGCCCTTTGAA+GGG | - | chr2_4:18462849-18462868 | None:intergenic | 55.0% | |
TGTGATGCGGTGCCCTTTGA+AGG | - | chr2_4:18462850-18462869 | None:intergenic | 55.0% | |
AGAATTGCGTCGGAGCTGAG+CGG | + | chr2_4:18462869-18462888 | Msa0319130:intron | 55.0% | |
GAGGAATCCGCGCTTAAAGC+TGG | + | chr2_4:18463314-18463333 | Msa0319130:CDS | 55.0% | |
TGAGCGTGATGGCAAGTGGA+TGG | + | chr2_4:18463555-18463574 | Msa0319130:CDS | 55.0% | |
GAGCGTGATGGCAAGTGGAT+GGG | + | chr2_4:18463556-18463575 | Msa0319130:CDS | 55.0% | |
GCTTCGAGGGAGAAGCCAAA+GGG | + | chr2_4:18463578-18463597 | Msa0319130:CDS | 55.0% | |
ATCCTGACGCAAGAGTGAGG+TGG | + | chr2_4:18464845-18464864 | Msa0319130:intron | 55.0% | |
TAGGGCACAAGCCTCCCAAT+AGG | - | chr2_4:18464975-18464994 | None:intergenic | 55.0% | |
TGCAAGACACTCACACGCAC+AGG | - | chr2_4:18465308-18465327 | None:intergenic | 55.0% | |
AGTCAGCAGGTGCCCAGTAA+TGG | - | chr2_4:18465595-18465614 | None:intergenic | 55.0% | |
GTAGGTCTGAGTTCGTGGAG+TGG | + | chr2_4:18466116-18466135 | Msa0319130:intron | 55.0% | |
! | ACAGCCGTTGGTTGTGGGTT+TGG | + | chr2_4:18466389-18466408 | Msa0319130:intron | 55.0% |
! | CAGCCGTTGGTTGTGGGTTT+GGG | + | chr2_4:18466390-18466409 | Msa0319130:intron | 55.0% |
CAGCCCAAACCCACAACCAA+CGG | - | chr2_4:18466396-18466415 | None:intergenic | 55.0% | |
AACTGCTCGAGCAGCACATG+CGG | - | chr2_4:18466815-18466834 | None:intergenic | 55.0% | |
TGCTCGAGCAGTTGCTGAAG+CGG | + | chr2_4:18466822-18466841 | Msa0319130:CDS | 55.0% | |
GGAGGCTGAAGAGGCAACAA+AGG | + | chr2_4:18466858-18466877 | Msa0319130:CDS | 55.0% | |
GGCTGAAGAGGCAACAAAGG+AGG | + | chr2_4:18466861-18466880 | Msa0319130:CDS | 55.0% | |
AGAGGCAACAAAGGAGGCAG+AGG | + | chr2_4:18466867-18466886 | Msa0319130:CDS | 55.0% | |
AGAAGCGGAGGCAGATGCAA+TGG | + | chr2_4:18466894-18466913 | Msa0319130:CDS | 55.0% | |
! | GCCCTCGCAAGCAGGTTTTA+TGG | - | chr2_4:18467094-18467113 | None:intergenic | 55.0% |
CCTCACCGCTGCGTTGTGAT+CGG | - | chr2_4:18462738-18462757 | None:intergenic | 60.0% | |
GATTCCGGCCGCCCTTCAAA+GGG | + | chr2_4:18462835-18462854 | Msa0319130:intron | 60.0% | |
! | ATGCGGTGCCCTTTGAAGGG+CGG | - | chr2_4:18462846-18462865 | None:intergenic | 60.0% |
! | TGGCAAGTGGATGGGCTTCG+AGG | + | chr2_4:18463564-18463583 | Msa0319130:CDS | 60.0% |
! | GGCAAGTGGATGGGCTTCGA+GGG | + | chr2_4:18463565-18463584 | Msa0319130:CDS | 60.0% |
GGCTTCGAGGGAGAAGCCAA+AGG | + | chr2_4:18463577-18463596 | Msa0319130:CDS | 60.0% | |
AGCCACCTCACTCTTGCGTC+AGG | - | chr2_4:18464850-18464869 | None:intergenic | 60.0% | |
GGCTGCCTCTTGTGCAGACA+TGG | - | chr2_4:18466794-18466813 | None:intergenic | 60.0% | |
TGCTGAAGCGGAAGCCCTCA+TGG | + | chr2_4:18466834-18466853 | Msa0319130:CDS | 60.0% | |
TGAAGCGGAAGCCCTCATGG+CGG | + | chr2_4:18466837-18466856 | Msa0319130:CDS | 60.0% | |
CTCTTCAGCCTCCGCCATGA+GGG | - | chr2_4:18466851-18466870 | None:intergenic | 60.0% | |
!! | CAGCGCCGATCACAACGCAG+CGG | + | chr2_4:18462730-18462749 | Msa0319130:five_prime_UTR | 65.0% |
CCGATCACAACGCAGCGGTG+AGG | + | chr2_4:18462735-18462754 | Msa0319130:five_prime_UTR | 65.0% | |
TTCCGATCTCCCTCGCGTGG+TGG | + | chr2_4:18462797-18462816 | Msa0319130:intron | 65.0% | |
CGCCGACGAGGAAGCGATTC+CGG | + | chr2_4:18462820-18462839 | Msa0319130:intron | 65.0% | |
GGCCGGAATCGCTTCCTCGT+CGG | - | chr2_4:18462825-18462844 | None:intergenic | 65.0% | |
CGATTCCGGCCGCCCTTCAA+AGG | + | chr2_4:18462834-18462853 | Msa0319130:intron | 65.0% | |
CCTCTTCAGCCTCCGCCATG+AGG | - | chr2_4:18466852-18466871 | None:intergenic | 65.0% | |
! | CCTCATGGCGGAGGCTGAAG+AGG | + | chr2_4:18466849-18466868 | Msa0319130:CDS | 65.0% |
GGAGGCAGAGGCTGCAGAAG+CGG | + | chr2_4:18466879-18466898 | Msa0319130:CDS | 65.0% | |
CGCCACCACGCGAGGGAGAT+CGG | - | chr2_4:18462802-18462821 | None:intergenic | 70.0% | |
! | GGTGCCCTTTGAAGGGCGGC+CGG | - | chr2_4:18462842-18462861 | None:intergenic | 70.0% |
AGCGGAAGCCCTCATGGCGG+AGG | + | chr2_4:18466840-18466859 | Msa0319130:CDS | 70.0% | |
GGCAGAGGCTGCAGAAGCGG+AGG | + | chr2_4:18466882-18466901 | Msa0319130:CDS | 70.0% | |
TCGTCGGCGCCACCACGCGA+GGG | - | chr2_4:18462809-18462828 | None:intergenic | 75.0% | |
! | CTCGTCGGCGCCACCACGCG+AGG | - | chr2_4:18462810-18462829 | None:intergenic | 80.0% |
!!! | CTCGCGTGGTGGCGCCGACG+AGG | + | chr2_4:18462808-18462827 | Msa0319130:intron | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_4 | gene | 18462618 | 18467224 | 18462618 | ID=Msa0319130;Name=Msa0319130 |
chr2_4 | mRNA | 18462618 | 18467224 | 18462618 | ID=Msa0319130-mRNA-1;Parent=Msa0319130;Name=Msa0319130-mRNA-1;_AED=0.35;_eAED=0.35;_QI=167|1|1|1|0.6|0.66|6|249|297 |
chr2_4 | exon | 18462618 | 18462756 | 18462618 | ID=Msa0319130-mRNA-1:exon:6870;Parent=Msa0319130-mRNA-1 |
chr2_4 | exon | 18463253 | 18463430 | 18463253 | ID=Msa0319130-mRNA-1:exon:6871;Parent=Msa0319130-mRNA-1 |
chr2_4 | exon | 18463539 | 18463759 | 18463539 | ID=Msa0319130-mRNA-1:exon:6872;Parent=Msa0319130-mRNA-1 |
chr2_4 | exon | 18464441 | 18464525 | 18464441 | ID=Msa0319130-mRNA-1:exon:6873;Parent=Msa0319130-mRNA-1 |
chr2_4 | exon | 18465590 | 18465673 | 18465590 | ID=Msa0319130-mRNA-1:exon:6874;Parent=Msa0319130-mRNA-1 |
chr2_4 | exon | 18466622 | 18467224 | 18466622 | ID=Msa0319130-mRNA-1:exon:6875;Parent=Msa0319130-mRNA-1 |
chr2_4 | five_prime_UTR | 18462618 | 18462756 | 18462618 | ID=Msa0319130-mRNA-1:five_prime_utr;Parent=Msa0319130-mRNA-1 |
chr2_4 | five_prime_UTR | 18463253 | 18463280 | 18463253 | ID=Msa0319130-mRNA-1:five_prime_utr;Parent=Msa0319130-mRNA-1 |
chr2_4 | CDS | 18463281 | 18463430 | 18463281 | ID=Msa0319130-mRNA-1:cds;Parent=Msa0319130-mRNA-1 |
chr2_4 | CDS | 18463539 | 18463759 | 18463539 | ID=Msa0319130-mRNA-1:cds;Parent=Msa0319130-mRNA-1 |
chr2_4 | CDS | 18464441 | 18464525 | 18464441 | ID=Msa0319130-mRNA-1:cds;Parent=Msa0319130-mRNA-1 |
chr2_4 | CDS | 18465590 | 18465673 | 18465590 | ID=Msa0319130-mRNA-1:cds;Parent=Msa0319130-mRNA-1 |
chr2_4 | CDS | 18466622 | 18466975 | 18466622 | ID=Msa0319130-mRNA-1:cds;Parent=Msa0319130-mRNA-1 |
chr2_4 | three_prime_UTR | 18466976 | 18467224 | 18466976 | ID=Msa0319130-mRNA-1:three_prime_utr;Parent=Msa0319130-mRNA-1 |
Gene Sequence |
Protein sequence |