AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0479820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479820 MtrunA17_Chr3g0144321 97.030 101 2 1 1 101 1 100 6.97e-68 198
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479820 AT2G33585.1 69.792 96 27 1 1 96 98 191 1.68e-46 147
Msa0479820 AT2G33585.2 74.545 55 14 0 1 55 98 152 5.56e-28 99.8

Find 48 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATATTTCCTGAAGGATA+TGG 0.208319 3_3:-84983234 None:intergenic
ACAACAAAGACAAATCATTT+AGG 0.215755 3_3:+84979059 Msa0479820:CDS
CAGGTTACTGGTTTGATATA+TGG 0.242969 3_3:+84979028 Msa0479820:intron
GAACCCTAGCTTATTATCTT+TGG 0.258975 3_3:+84978806 Msa0479820:CDS
AAAATACTGTATTACTATTA+AGG 0.261649 3_3:+84983107 Msa0479820:three_prime_UTR
GAGGAAGCAACCTCGCTTCT+TGG 0.300549 3_3:+84978773 Msa0479820:CDS
CTTCTTCAATGGCGAGTAAC+TGG 0.306432 3_3:+84978692 Msa0479820:exon
CAACAAAGACAAATCATTTA+GGG 0.367523 3_3:+84979060 Msa0479820:CDS
GTTCTTGGCAGGAATCAAAA+TGG 0.377515 3_3:+84983003 Msa0479820:intron
AGGAAGCAACCTCGCTTCTT+GGG 0.395335 3_3:+84978774 Msa0479820:CDS
TCAAAATGGAAACAATCAAC+AGG 0.395695 3_3:+84983017 Msa0479820:three_prime_UTR
GGTAACAACCCATATCCTTC+AGG 0.417391 3_3:+84983225 Msa0479820:three_prime_UTR
ACATATTTCCTGAAGGATAT+GGG 0.422724 3_3:-84983233 None:intergenic
ACGATTGAAGACTCAAACTC+TGG 0.451999 3_3:-84978641 None:intergenic
GAGGAACGAACTTGAGGATC+AGG 0.455383 3_3:-84978931 None:intergenic
AATTACACTATAACATTTGA+AGG 0.455809 3_3:-84983178 None:intergenic
TAAGTAATAGTGGATTATAA+TGG 0.457737 3_3:-84983279 None:intergenic
CGAACTTGAGGATCAGGAAC+AGG 0.471583 3_3:-84978925 None:intergenic
CGAGTTTCAACATAGCGAAA+AGG 0.472893 3_3:-84978898 None:intergenic
CTCGCTTCTTGGGTTGTCGC+CGG 0.477421 3_3:+84978784 Msa0479820:CDS
TGATCCAAAGATAATAAGCT+AGG 0.483025 3_3:-84978810 None:intergenic
CACTATAACATTTGAAGGGA+GGG 0.490517 3_3:-84983173 None:intergenic
AAGATAATAAGCTAGGGTTC+CGG 0.497881 3_3:-84978803 None:intergenic
TATACTATACTCTTCTTCAA+TGG 0.500067 3_3:+84978681 Msa0479820:exon
TCGCGTTTGAGATCTTGATC+AGG 0.521692 3_3:-84978835 None:intergenic
ATTAATAACATATTTCCTGA+AGG 0.532087 3_3:-84983240 None:intergenic
GTCGTTCGTGAACAATTCGA+TGG 0.543665 3_3:+84978738 Msa0479820:CDS
TGTTGTTTAACGAAACGAAA+GGG 0.559678 3_3:+84978563 Msa0479820:five_prime_UTR
AAAGTAGGGTGTGCCACACA+AGG 0.560704 3_3:-84978517 None:intergenic
TAATAGTGGATTATAATGGC+AGG 0.575861 3_3:-84983275 None:intergenic
GATCCAAAGATAATAAGCTA+GGG 0.581242 3_3:-84978809 None:intergenic
TTCGTGAACAATTCGATGGG+TGG 0.584430 3_3:+84978742 Msa0479820:CDS
GAAGAACACTCGGCAACGCA+AGG 0.595860 3_3:+84978716 Msa0479820:CDS
TTGACACATTTACCCTTGTG+TGG 0.600283 3_3:+84978504 None:intergenic
ATTACACTATAACATTTGAA+GGG 0.606449 3_3:-84983177 None:intergenic
TCGTTCGTGAACAATTCGAT+GGG 0.609126 3_3:+84978739 Msa0479820:CDS
GTTTAACGAAACGAAAGGGT+CGG 0.614155 3_3:+84978567 Msa0479820:five_prime_UTR
AATTCGATGGGTGGTCTGAG+AGG 0.619195 3_3:+84978751 Msa0479820:CDS
TCGATGGGTGGTCTGAGAGG+AGG 0.620565 3_3:+84978754 Msa0479820:CDS
ACACTATAACATTTGAAGGG+AGG 0.623920 3_3:-84983174 None:intergenic
TGTTTGACAGTATGTGTGCA+AGG 0.628493 3_3:-84978610 None:intergenic
TTGTTGTTTAACGAAACGAA+AGG 0.637209 3_3:+84978562 Msa0479820:five_prime_UTR
CGGCGACAACCCAAGAAGCG+AGG 0.662090 3_3:-84978783 None:intergenic
ATAGCGAAAAGGATCATCAG+AGG 0.666816 3_3:-84978887 None:intergenic
CAAAATGGAAACAATCAACA+GGG 0.671176 3_3:+84983018 Msa0479820:three_prime_UTR
AAGTAGGGTGTGCCACACAA+GGG 0.685910 3_3:-84978516 None:intergenic
GTTTGACAGTATGTGTGCAA+GGG 0.694466 3_3:-84978609 None:intergenic
AGTAACTGGAGAAGAACACT+CGG 0.697006 3_3:+84978706 Msa0479820:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAAAATATATTTTAATA+TGG - chr3_3:84980132-84980151 None:intergenic 0.0%
!!! TAATTTTCAATTTTAATTTC+AGG + chr3_3:84979009-84979028 Msa0479820:intron 10.0%
!! AAATTACTTTATATATTGTA+CGG + chr3_3:84979314-84979333 Msa0479820:intron 10.0%
!!! ATATCTTACATTTTAAAAAT+AGG - chr3_3:84979387-84979406 None:intergenic 10.0%
!! ATAAGTCAAATATTAAATAA+TGG + chr3_3:84979726-84979745 Msa0479820:intron 10.0%
!!! CATATTTTCAATAAATTAAT+GGG - chr3_3:84980214-84980233 None:intergenic 10.0%
!!! ACATATTTTCAATAAATTAA+TGG - chr3_3:84980215-84980234 None:intergenic 10.0%
!!! ATTCATTTTTAAATTTTGTT+TGG - chr3_3:84982430-84982449 None:intergenic 10.0%
!! TAATAATAGAGAAAAAGAAA+AGG - chr3_3:84978980-84978999 None:intergenic 15.0%
!! ATAGATATTAACACAATATT+AGG + chr3_3:84982332-84982351 Msa0479820:intron 15.0%
!!! CCACTTTTATATTTAAAAAA+TGG - chr3_3:84982621-84982640 None:intergenic 15.0%
!!! CCATTTTTTAAATATAAAAG+TGG + chr3_3:84982618-84982637 Msa0479820:intron 15.0%
!! TACAAGAAAAATAAACATAT+TGG - chr3_3:84982893-84982912 None:intergenic 15.0%
!!! ATGTTTATTTTTCTTGTATT+TGG + chr3_3:84982895-84982914 Msa0479820:intron 15.0%
!!! TGTTTATTTTTCTTGTATTT+GGG + chr3_3:84982896-84982915 Msa0479820:intron 15.0%
!!! TTATATTATTTTTGGATACA+GGG + chr3_3:84983045-84983064 Msa0479820:three_prime_UTR 15.0%
!! AAAATACTGTATTACTATTA+AGG + chr3_3:84983107-84983126 Msa0479820:three_prime_UTR 15.0%
!! TTAGGGAAAAATATATTCAT+GGG - chr3_3:84980168-84980187 None:intergenic 20.0%
!! ATTAGGGAAAAATATATTCA+TGG - chr3_3:84980169-84980188 None:intergenic 20.0%
!!! AAGTTGATTTTAAAGTGAAA+GGG + chr3_3:84980309-84980328 Msa0479820:intron 20.0%
!!! GTTTAAAAAAATAGGGTTTT+CGG + chr3_3:84980602-84980621 Msa0479820:intron 20.0%
!! ATATTCATTGCATGTTTAAA+AGG - chr3_3:84980925-84980944 None:intergenic 20.0%
!! AATTAACCTCTATATAACAT+AGG + chr3_3:84981429-84981448 Msa0479820:intron 20.0%
!!! TTTTAAATATAAAAGTGGCT+TGG + chr3_3:84982623-84982642 Msa0479820:intron 20.0%
!!! AGACGTTTTTAATATAAAAG+TGG + chr3_3:84982751-84982770 Msa0479820:intron 20.0%
!!! TTTTTAATATAAAAGTGGCT+CGG + chr3_3:84982756-84982775 Msa0479820:intron 20.0%
!!! CTTATATTATTTTTGGATAC+AGG + chr3_3:84983044-84983063 Msa0479820:three_prime_UTR 20.0%
!! ATTACACTATAACATTTGAA+GGG - chr3_3:84983180-84983199 None:intergenic 20.0%
!! AATTACACTATAACATTTGA+AGG - chr3_3:84983181-84983200 None:intergenic 20.0%
!! ATTAATAACATATTTCCTGA+AGG - chr3_3:84983243-84983262 None:intergenic 20.0%
! TATACTATACTCTTCTTCAA+TGG + chr3_3:84978681-84978700 Msa0479820:exon 25.0%
! AAAAGAAAAGGAAGTAAAAG+TGG - chr3_3:84978968-84978987 None:intergenic 25.0%
!!! CAATTTTAATTTCAGGTTAC+TGG + chr3_3:84979016-84979035 Msa0479820:intron 25.0%
! ACAACAAAGACAAATCATTT+AGG + chr3_3:84979059-84979078 Msa0479820:CDS 25.0%
! CAACAAAGACAAATCATTTA+GGG + chr3_3:84979060-84979079 Msa0479820:CDS 25.0%
!!! TCAAGTTGGTGAAATAATAA+CGG - chr3_3:84979184-84979203 None:intergenic 25.0%
! GCAAAATAGTGAAATTTGAT+CGG + chr3_3:84979246-84979265 Msa0479820:intron 25.0%
! CAAAATAGTGAAATTTGATC+GGG + chr3_3:84979247-84979266 Msa0479820:intron 25.0%
! AAAATAGTGAAATTTGATCG+GGG + chr3_3:84979248-84979267 Msa0479820:intron 25.0%
! GTAAACCTAATTTACATTGT+TGG + chr3_3:84979279-84979298 Msa0479820:intron 25.0%
! ATACACCAACAATGTAAATT+AGG - chr3_3:84979287-84979306 None:intergenic 25.0%
! ATGTAAGATATTATAGACCT+AGG + chr3_3:84979396-84979415 Msa0479820:intron 25.0%
! TGTTATAATCACAAGTGTTT+AGG - chr3_3:84979660-84979679 None:intergenic 25.0%
! CTTTCCTAACTAATATGTAA+AGG - chr3_3:84979767-84979786 None:intergenic 25.0%
! TATTAGTTAGGAAAGCAAAA+CGG + chr3_3:84979772-84979791 Msa0479820:intron 25.0%
! ATAATCACAAGCAATTTAGT+CGG - chr3_3:84980075-84980094 None:intergenic 25.0%
! TATTCAAAAGATCAAAGAAG+TGG + chr3_3:84980250-84980269 Msa0479820:intron 25.0%
!!! GAAGTTGATTTTAAAGTGAA+AGG + chr3_3:84980308-84980327 Msa0479820:intron 25.0%
!!! AGTTGATTTTAAAGTGAAAG+GGG + chr3_3:84980310-84980329 Msa0479820:intron 25.0%
! CTTTACTAGCTAATATGTAA+AGG - chr3_3:84980533-84980552 None:intergenic 25.0%
! TATTAGCTAGTAAAGCAAAA+CGG + chr3_3:84980538-84980557 Msa0479820:intron 25.0%
! GGAACGTGTTTAAAAAAATA+GGG + chr3_3:84980595-84980614 Msa0479820:intron 25.0%
!!! AATAAATTAAAGGTATTCCG+CGG - chr3_3:84980974-84980993 None:intergenic 25.0%
! ATAGAGGTTAATTATAACCT+TGG - chr3_3:84981422-84981441 None:intergenic 25.0%
!! TGATTGTGAACATAAGATTT+TGG + chr3_3:84981520-84981539 Msa0479820:intron 25.0%
!! ATTCAACACTAATTGTTTCT+GGG + chr3_3:84981607-84981626 Msa0479820:intron 25.0%
! ATTTCCAATATCAGGATTAT+GGG - chr3_3:84981662-84981681 None:intergenic 25.0%
!! ATCATTTGATTTCCAATATC+AGG - chr3_3:84981670-84981689 None:intergenic 25.0%
!!! AGTGAACGTTTTTTTTCTAA+TGG - chr3_3:84981703-84981722 None:intergenic 25.0%
! TTAGAAAAAAAACGTTCACT+TGG + chr3_3:84981703-84981722 Msa0479820:intron 25.0%
!!! TTGGTCTCTTTTGTTTAATT+GGG + chr3_3:84981722-84981741 Msa0479820:intron 25.0%
! ATTGAAGTTGAATTCATCAT+CGG - chr3_3:84981885-84981904 None:intergenic 25.0%
!!! AACTTCAATTTTGCTTTGAA+TGG + chr3_3:84981896-84981915 Msa0479820:intron 25.0%
!!! ACTTCAATTTTGCTTTGAAT+GGG + chr3_3:84981897-84981916 Msa0479820:intron 25.0%
!! AACAAGTTCTTCTAAAAGAA+AGG + chr3_3:84982388-84982407 Msa0479820:intron 25.0%
! GATACTTTATCGATATGTAT+AGG + chr3_3:84982778-84982797 Msa0479820:intron 25.0%
! TTTGTGATTGCTTGATTATT+TGG + chr3_3:84982919-84982938 Msa0479820:intron 25.0%
! TTGTGATTGCTTGATTATTT+GGG + chr3_3:84982920-84982939 Msa0479820:intron 25.0%
!! TTTTAATGCTCTGATATTAG+AGG + chr3_3:84982943-84982962 Msa0479820:intron 25.0%
!! TTCATTTATGATGATGTTCT+TGG + chr3_3:84982988-84983007 Msa0479820:intron 25.0%
!! AGGGAGACTTATATTATTTT+TGG + chr3_3:84983037-84983056 Msa0479820:three_prime_UTR 25.0%
GCACACAAGTAAAAAAAGTA+GGG - chr3_3:84978534-84978553 None:intergenic 30.0%
AGCACACAAGTAAAAAAAGT+AGG - chr3_3:84978535-84978554 None:intergenic 30.0%
!!! ACTTTTTTTACTTGTGTGCT+AGG + chr3_3:84978535-84978554 Msa0479820:five_prime_UTR 30.0%
!! TTGTTGTTTAACGAAACGAA+AGG + chr3_3:84978562-84978581 Msa0479820:five_prime_UTR 30.0%
! TGTTGTTTAACGAAACGAAA+GGG + chr3_3:84978563-84978582 Msa0479820:five_prime_UTR 30.0%
GATCCAAAGATAATAAGCTA+GGG - chr3_3:84978812-84978831 None:intergenic 30.0%
TGATCCAAAGATAATAAGCT+AGG - chr3_3:84978813-84978832 None:intergenic 30.0%
AAAAGTGGTAAGTAAGAAAG+AGG - chr3_3:84978953-84978972 None:intergenic 30.0%
CAGCACATGATTAAGTAATT+AGG - chr3_3:84979112-84979131 None:intergenic 30.0%
TTAATTACAACGTGTCAAGT+TGG - chr3_3:84979198-84979217 None:intergenic 30.0%
AAATAGTGAAATTTGATCGG+GGG + chr3_3:84979249-84979268 Msa0479820:intron 30.0%
GTGTTTGGATATGCATAAAA+AGG + chr3_3:84979422-84979441 Msa0479820:intron 30.0%
! TTGAGTATCACAAATTTGCT+TGG + chr3_3:84979449-84979468 Msa0479820:intron 30.0%
GCAACAAACATAATTGTTAG+AGG + chr3_3:84979579-84979598 Msa0479820:intron 30.0%
! CTTATTGAAACACACTGTTT+TGG - chr3_3:84979711-84979730 None:intergenic 30.0%
CAGTCCTTTACATATTAGTT+AGG + chr3_3:84979760-84979779 Msa0479820:intron 30.0%
TAATCACAAGCAATTTAGTC+GGG - chr3_3:84980074-84980093 None:intergenic 30.0%
ATATTCATGGGACGTTTAAA+AGG - chr3_3:84980156-84980175 None:intergenic 30.0%
!! CGACATTTTGACATTGATTA+GGG - chr3_3:84980185-84980204 None:intergenic 30.0%
GTCGTTGTTTATTATTTGAC+TGG - chr3_3:84980496-84980515 None:intergenic 30.0%
CGGAACGTGTTTAAAAAAAT+AGG + chr3_3:84980594-84980613 Msa0479820:intron 30.0%
! AATCCTCTTTGCAAAGTTTT+TGG + chr3_3:84981049-84981068 Msa0479820:intron 30.0%
! ATCCTCTTTGCAAAGTTTTT+GGG + chr3_3:84981050-84981069 Msa0479820:intron 30.0%
GAATTAGGTTTGAGTAATGA+TGG - chr3_3:84981358-84981377 None:intergenic 30.0%
ATGCGAACTAATGAAGAATT+AGG - chr3_3:84981373-84981392 None:intergenic 30.0%
ATCTTGCTCTATAACTAGTT+CGG + chr3_3:84981489-84981508 Msa0479820:intron 30.0%
GACTGAATTTCAATACGAAT+TGG + chr3_3:84981584-84981603 Msa0479820:intron 30.0%
GATTCAACACTAATTGTTTC+TGG + chr3_3:84981606-84981625 Msa0479820:intron 30.0%
!! TTCAACACTAATTGTTTCTG+GGG + chr3_3:84981608-84981627 Msa0479820:intron 30.0%
GATTTCCAATATCAGGATTA+TGG - chr3_3:84981663-84981682 None:intergenic 30.0%
TGGAAATCAAATGATTGACT+TGG + chr3_3:84981675-84981694 Msa0479820:intron 30.0%
!! CTTGGTCTCTTTTGTTTAAT+TGG + chr3_3:84981721-84981740 Msa0479820:intron 30.0%
TTGAAGTTGAATTCATCATC+GGG - chr3_3:84981884-84981903 None:intergenic 30.0%
!!! TTTACAGCCATTTTTTGGTT+CGG - chr3_3:84981932-84981951 None:intergenic 30.0%
!!! CATGTTTTACAGCCATTTTT+TGG - chr3_3:84981937-84981956 None:intergenic 30.0%
!! CTTTTAGAAGAACTTGTTCA+AGG - chr3_3:84982386-84982405 None:intergenic 30.0%
!!! AAGAATCACGAGTTTTTTTC+TGG + chr3_3:84982486-84982505 Msa0479820:intron 30.0%
GGTATGATTCTAATACAGAT+AGG - chr3_3:84982600-84982619 None:intergenic 30.0%
TTGCATGTATGAATACTTCA+TGG + chr3_3:84982726-84982745 Msa0479820:intron 30.0%
! GGTGAAGTATCAAAGAATAT+TGG + chr3_3:84982799-84982818 Msa0479820:intron 30.0%
AAAGAATATTGGTACCGTAT+TGG + chr3_3:84982810-84982829 Msa0479820:intron 30.0%
TAAAGGACACATATCCAATA+CGG - chr3_3:84982827-84982846 None:intergenic 30.0%
TATTGGATATGTGTCCTTTA+TGG + chr3_3:84982827-84982846 Msa0479820:intron 30.0%
ATATATGAATGCATGCTTCA+TGG + chr3_3:84982867-84982886 Msa0479820:intron 30.0%
TCAAAATGGAAACAATCAAC+AGG + chr3_3:84983017-84983036 Msa0479820:three_prime_UTR 30.0%
CAAAATGGAAACAATCAACA+GGG + chr3_3:84983018-84983037 Msa0479820:three_prime_UTR 30.0%
!!! AGTATTTTGATTCCTGCTAA+GGG - chr3_3:84983095-84983114 None:intergenic 30.0%
ACATATTTCCTGAAGGATAT+GGG - chr3_3:84983236-84983255 None:intergenic 30.0%
AACATATTTCCTGAAGGATA+TGG - chr3_3:84983237-84983256 None:intergenic 30.0%
!!! TTTTTTACTTGTGTGCTAGG+AGG + chr3_3:84978538-84978557 Msa0479820:five_prime_UTR 35.0%
AAGATAATAAGCTAGGGTTC+CGG - chr3_3:84978806-84978825 None:intergenic 35.0%
GAACCCTAGCTTATTATCTT+TGG + chr3_3:84978806-84978825 Msa0479820:CDS 35.0%
!! CAGGTTACTGGTTTGATATA+TGG + chr3_3:84979028-84979047 Msa0479820:intron 35.0%
CGGTGTACAATCATTATACT+CGG - chr3_3:84979146-84979165 None:intergenic 35.0%
AACGGACGTATATACATTGT+CGG - chr3_3:84979166-84979185 None:intergenic 35.0%
CTAGAAGTAATACTATGTCG+TGG + chr3_3:84979224-84979243 Msa0479820:intron 35.0%
AATAGTGAAATTTGATCGGG+GGG + chr3_3:84979250-84979269 Msa0479820:intron 35.0%
TATAGACCTAGGATTGTGTT+TGG + chr3_3:84979407-84979426 Msa0479820:intron 35.0%
TTCGTTGTAAAACTAGAGCA+TGG + chr3_3:84979491-84979510 Msa0479820:intron 35.0%
! GTAAAACTAGAGCATGGTTT+TGG + chr3_3:84979497-84979516 Msa0479820:intron 35.0%
CAAGTGTTTAGGCTTCATTT+AGG - chr3_3:84979649-84979668 None:intergenic 35.0%
!!! AACACACTGTTTTGGAAAGA+CGG - chr3_3:84979703-84979722 None:intergenic 35.0%
TCCGCGTGTTTAAAAATGAT+AGG + chr3_3:84979831-84979850 Msa0479820:intron 35.0%
!! CCCTATCATTTTTAAACACG+CGG - chr3_3:84979835-84979854 None:intergenic 35.0%
CCGCGTGTTTAAAAATGATA+GGG + chr3_3:84979832-84979851 Msa0479820:intron 35.0%
! CAAGATTACGATTTCTGAGA+AGG - chr3_3:84979954-84979973 None:intergenic 35.0%
!! GCGACATTTTGACATTGATT+AGG - chr3_3:84980186-84980205 None:intergenic 35.0%
! AGATCAAAGAAGTGGTTCTA+TGG + chr3_3:84980258-84980277 Msa0479820:intron 35.0%
!!! TTTTAAAGTGAAAGGGGTAG+AGG + chr3_3:84980316-84980335 Msa0479820:intron 35.0%
! TTTAAAGTGAAAGGGGTAGA+GGG + chr3_3:84980317-84980336 Msa0479820:intron 35.0%
!! TTGAAACACACTGTTTTGGA+AGG - chr3_3:84979707-84979726 None:intergenic 35.0%
TGAATCACAACACAATTCCA+TGG + chr3_3:84980766-84980785 Msa0479820:intron 35.0%
GAATCACAACACAATTCCAT+GGG + chr3_3:84980767-84980786 Msa0479820:intron 35.0%
AATCACAACACAATTCCATG+GGG + chr3_3:84980768-84980787 Msa0479820:intron 35.0%
TAATCACAAGCAATGTAGTC+AGG - chr3_3:84980844-84980863 None:intergenic 35.0%
ATAAGAGAAAGACATGTCTC+TGG - chr3_3:84980877-84980896 None:intergenic 35.0%
!! CGGCATTTTGACATTGATTA+AGG - chr3_3:84980954-84980973 None:intergenic 35.0%
TAATCAATGTCAAAATGCCG+CGG + chr3_3:84980954-84980973 Msa0479820:intron 35.0%
AAACTTTGCAAAGAGGATTG+TGG - chr3_3:84981048-84981067 None:intergenic 35.0%
! TCCTCTTTGCAAAGTTTTTG+GGG + chr3_3:84981051-84981070 Msa0479820:intron 35.0%
TCACTTGTGAGCTTTCTATT+TGG + chr3_3:84981104-84981123 Msa0479820:intron 35.0%
! CTTTCTATTTGGCTCGTATA+AGG + chr3_3:84981115-84981134 Msa0479820:intron 35.0%
AATGGTTGAATCTCCAAAGA+AGG - chr3_3:84981269-84981288 None:intergenic 35.0%
!! GAATACCATGATGATGGAAT+TGG - chr3_3:84981292-84981311 None:intergenic 35.0%
AAACTACTGGAATGGAAGAA+AGG - chr3_3:84981327-84981346 None:intergenic 35.0%
TTTGAGTAATGATGGCAATG+AGG - chr3_3:84981350-84981369 None:intergenic 35.0%
TTTCACAATTCTTCTCTCCA+AGG + chr3_3:84981402-84981421 Msa0479820:intron 35.0%
TGAGCTCCTATGTTATATAG+AGG - chr3_3:84981438-84981457 None:intergenic 35.0%
! TGACGATGATGATGAAGATA+TGG - chr3_3:84981470-84981489 None:intergenic 35.0%
TCTTGCTCTATAACTAGTTC+GGG + chr3_3:84981490-84981509 Msa0479820:intron 35.0%
!! TCAACACTAATTGTTTCTGG+GGG + chr3_3:84981609-84981628 Msa0479820:intron 35.0%
AGTACCCATAATCCTGATAT+TGG + chr3_3:84981655-84981674 Msa0479820:intron 35.0%
CAATTGAAGTCTCGTGTAAA+TGG - chr3_3:84981777-84981796 None:intergenic 35.0%
CATTTACACGAGACTTCAAT+TGG + chr3_3:84981775-84981794 Msa0479820:intron 35.0%
! AAGATTTTACCTCAAAGCTC+AGG - chr3_3:84981801-84981820 None:intergenic 35.0%
TGAAGTTGAATTCATCATCG+GGG - chr3_3:84981883-84981902 None:intergenic 35.0%
!!! CCATTTTTTGGTTCGGATTT+AGG - chr3_3:84981925-84981944 None:intergenic 35.0%
CCTAAATCCGAACCAAAAAA+TGG + chr3_3:84981922-84981941 Msa0479820:intron 35.0%
!!! TAAAACATGCCATTTTTCGC+CGG + chr3_3:84981948-84981967 Msa0479820:intron 35.0%
TTTGTTGCATTGCATGATGA+GGG - chr3_3:84982308-84982327 None:intergenic 35.0%
GATACTCTATGGATATGTGT+GGG + chr3_3:84982645-84982664 Msa0479820:intron 35.0%
TCGAAGAATTGGTATCGTAT+TGG + chr3_3:84982675-84982694 Msa0479820:intron 35.0%
TGTCCTTTATGGATACATGA+AGG + chr3_3:84982701-84982720 Msa0479820:intron 35.0%
GTCCTTTATGGATACATGAA+GGG + chr3_3:84982702-84982721 Msa0479820:intron 35.0%
ATCCCTTCATGTATCCATAA+AGG - chr3_3:84982707-84982726 None:intergenic 35.0%
TGTCCTTTATGGATACATGA+AGG + chr3_3:84982701-84982720 Msa0479820:intron 35.0%
GTCCTTTATGGATACATGAA+GGG + chr3_3:84982702-84982721 Msa0479820:intron 35.0%
ATCCCTTCATGTATCCATAA+AGG - chr3_3:84982707-84982726 None:intergenic 35.0%
! TTTATGATGATGTTCTTGGC+AGG + chr3_3:84982992-84983011 Msa0479820:intron 35.0%
!!! CAGTATTTTGATTCCTGCTA+AGG - chr3_3:84983096-84983115 None:intergenic 35.0%
CACTATAACATTTGAAGGGA+GGG - chr3_3:84983176-84983195 None:intergenic 35.0%
ACACTATAACATTTGAAGGG+AGG - chr3_3:84983177-84983196 None:intergenic 35.0%
!!! TGAGTTTTGAGAATGACTGT+TGG + chr3_3:84983204-84983223 Msa0479820:three_prime_UTR 35.0%
GTTTAACGAAACGAAAGGGT+CGG + chr3_3:84978567-84978586 Msa0479820:five_prime_UTR 40.0%
GTTTGACAGTATGTGTGCAA+GGG - chr3_3:84978612-84978631 None:intergenic 40.0%
TGTTTGACAGTATGTGTGCA+AGG - chr3_3:84978613-84978632 None:intergenic 40.0%
ACGATTGAAGACTCAAACTC+TGG - chr3_3:84978644-84978663 None:intergenic 40.0%
AGTAACTGGAGAAGAACACT+CGG + chr3_3:84978706-84978725 Msa0479820:CDS 40.0%
TCGTTCGTGAACAATTCGAT+GGG + chr3_3:84978739-84978758 Msa0479820:CDS 40.0%
ATAGCGAAAAGGATCATCAG+AGG - chr3_3:84978890-84978909 None:intergenic 40.0%
CGAGTTTCAACATAGCGAAA+AGG - chr3_3:84978901-84978920 None:intergenic 40.0%
AAGAAAGAGGAACGAACTTG+AGG - chr3_3:84978940-84978959 None:intergenic 40.0%
ATAGTGAAATTTGATCGGGG+GGG + chr3_3:84979251-84979270 Msa0479820:intron 40.0%
GCATATCCAAACACAATCCT+AGG - chr3_3:84979416-84979435 None:intergenic 40.0%
!!! AACTAGAGCATGGTTTTGGT+TGG + chr3_3:84979501-84979520 Msa0479820:intron 40.0%
!!! TGGTTTTGGTTGGATGCATT+TGG + chr3_3:84979511-84979530 Msa0479820:intron 40.0%
!!! GGTTTTGGTTGGATGCATTT+GGG + chr3_3:84979512-84979531 Msa0479820:intron 40.0%
! GTTTTCAGTTTCTCGAAACC+AGG + chr3_3:84979854-84979873 Msa0479820:intron 40.0%
TCTTGCTCGAAACGAACATA+AGG + chr3_3:84979919-84979938 Msa0479820:intron 40.0%
TTCAAGCAAGACCACCAAAA+GGG - chr3_3:84979988-84980007 None:intergenic 40.0%
ATTCAAGCAAGACCACCAAA+AGG - chr3_3:84979989-84980008 None:intergenic 40.0%
ATTCCATGGGGCTATATGAT+AGG + chr3_3:84980018-84980037 Msa0479820:intron 40.0%
! TGGTTCTATGGATGTTTGCA+AGG + chr3_3:84980270-84980289 Msa0479820:intron 40.0%
GGTTCTATGGATGTTTGCAA+GGG + chr3_3:84980271-84980290 Msa0479820:intron 40.0%
! CTGGTTGAAACACACTGTTT+TGG - chr3_3:84980477-84980496 None:intergenic 40.0%
TTGCAAAGCTCAACTCAAGT+CGG + chr3_3:84980640-84980659 Msa0479820:intron 40.0%
ATCACAACACAATTCCATGG+GGG + chr3_3:84980769-84980788 Msa0479820:intron 40.0%
ATTCCATGGGGGTAGATTAT+AGG + chr3_3:84980780-84980799 Msa0479820:intron 40.0%
TCCCCAAAAACTTTGCAAAG+AGG - chr3_3:84981055-84981074 None:intergenic 40.0%
!! TCTTTGCAAAGTTTTTGGGG+AGG + chr3_3:84981054-84981073 Msa0479820:intron 40.0%
AGAAAGCTCACAAGTGAAGA+AGG - chr3_3:84981101-84981120 None:intergenic 40.0%
TCGACACACATCATATTCTG+TGG - chr3_3:84981165-84981184 None:intergenic 40.0%
ATATGATGTGTGTCGAAAGC+AGG + chr3_3:84981169-84981188 Msa0479820:intron 40.0%
TGGTCATCTGACAAGGAAAT+CGG - chr3_3:84981204-84981223 None:intergenic 40.0%
AAGAGTTTGGTCATCTGACA+AGG - chr3_3:84981211-84981230 None:intergenic 40.0%
GGACAGGAGATATAAGAGTT+TGG - chr3_3:84981224-84981243 None:intergenic 40.0%
ACAGACAGAAACAGAGAAGT+TGG - chr3_3:84981245-84981264 None:intergenic 40.0%
GTTTCTGTCTGTACCTTCTT+TGG + chr3_3:84981253-84981272 Msa0479820:intron 40.0%
!! CCATGATGATGGAATTGGAA+TGG - chr3_3:84981287-84981306 None:intergenic 40.0%
CCATTCCAATTCCATCATCA+TGG + chr3_3:84981284-84981303 Msa0479820:intron 40.0%
! GTTGGTGAATACCATGATGA+TGG - chr3_3:84981298-84981317 None:intergenic 40.0%
!! ATGGAAGAAAGGCATTGTGT+TGG - chr3_3:84981316-84981335 None:intergenic 40.0%
CAATGAGGAAACTACTGGAA+TGG - chr3_3:84981335-84981354 None:intergenic 40.0%
ACTCCAGAAACAGAAGAACA+CGG + chr3_3:84981559-84981578 Msa0479820:intron 40.0%
!! CAACACTAATTGTTTCTGGG+GGG + chr3_3:84981610-84981629 Msa0479820:intron 40.0%
! TTTAGGATTCCGGCGAAAAA+TGG - chr3_3:84981960-84981979 None:intergenic 40.0%
TTGTTGCATTGCATGATGAG+GGG - chr3_3:84982307-84982326 None:intergenic 40.0%
! GTTTGTTGCATTGCATGATG+AGG - chr3_3:84982309-84982328 None:intergenic 40.0%
TCTTTCAACGCATCTGAATG+AGG - chr3_3:84982525-84982544 None:intergenic 40.0%
! AGACAATACGGTTTGGACTT+TGG - chr3_3:84982550-84982569 None:intergenic 40.0%
CAACTTGAGACAATACGGTT+TGG - chr3_3:84982557-84982576 None:intergenic 40.0%
GAGTGCAACTTGAGACAATA+CGG - chr3_3:84982562-84982581 None:intergenic 40.0%
! AAAGTGGCTTGGATACTCTA+TGG + chr3_3:84982634-84982653 Msa0479820:intron 40.0%
GGATACTCTATGGATATGTG+TGG + chr3_3:84982644-84982663 Msa0479820:intron 40.0%
!! TGGGTGAAGTATCGAAGAAT+TGG + chr3_3:84982664-84982683 Msa0479820:intron 40.0%
CGTATTGGATGTGTCCTTTA+TGG + chr3_3:84982690-84982709 Msa0479820:intron 40.0%
GTTCTTGGCAGGAATCAAAA+TGG + chr3_3:84983003-84983022 Msa0479820:intron 40.0%
CTTCTTCAATGGCGAGTAAC+TGG + chr3_3:84978692-84978711 Msa0479820:exon 45.0%
GTCGTTCGTGAACAATTCGA+TGG + chr3_3:84978738-84978757 Msa0479820:CDS 45.0%
TTCGTGAACAATTCGATGGG+TGG + chr3_3:84978742-84978761 Msa0479820:CDS 45.0%
! TCGCGTTTGAGATCTTGATC+AGG - chr3_3:84978838-84978857 None:intergenic 45.0%
! TGGTTGGATGCATTTGGGTT+TGG + chr3_3:84979517-84979536 Msa0479820:intron 45.0%
ACGGTGCGTTTACATTAGTG+AGG + chr3_3:84979791-84979810 Msa0479820:intron 45.0%
!! CAAACAGCACGTACTGACTT+GGG - chr3_3:84979894-84979913 None:intergenic 45.0%
!! ACAAACAGCACGTACTGACT+TGG - chr3_3:84979895-84979914 None:intergenic 45.0%
! TTGACCACGAAGTTCCCTTT+TGG + chr3_3:84979971-84979990 Msa0479820:intron 45.0%
TGAATTGCAGCACGATTCCA+TGG + chr3_3:84980004-84980023 Msa0479820:intron 45.0%
GAATTGCAGCACGATTCCAT+GGG + chr3_3:84980005-84980024 Msa0479820:intron 45.0%
AATTGCAGCACGATTCCATG+GGG + chr3_3:84980006-84980025 Msa0479820:intron 45.0%
CATCCTATCATATAGCCCCA+TGG - chr3_3:84980024-84980043 None:intergenic 45.0%
CATGGGGCTATATGATAGGA+TGG + chr3_3:84980022-84980041 Msa0479820:intron 45.0%
AAAGGGGTAGAGGGAAAAGT+TGG + chr3_3:84980326-84980345 Msa0479820:intron 45.0%
!!! AACACACTGTTTTGGAAGGC+TGG - chr3_3:84980469-84980488 None:intergenic 45.0%
ACGGTGCGTTTAGATTAGTG+AGG + chr3_3:84980557-84980576 Msa0479820:intron 45.0%
! GTTTTCGGTTTCTCGAAACC+AGG + chr3_3:84980617-84980636 Msa0479820:intron 45.0%
!! TTGAGTTGAGCTTTGCAACC+TGG - chr3_3:84980638-84980657 None:intergenic 45.0%
TTCAAGCGAGAAGAGACGAA+CGG - chr3_3:84980672-84980691 None:intergenic 45.0%
CATCCTATAATCTACCCCCA+TGG - chr3_3:84980786-84980805 None:intergenic 45.0%
CATGGGGGTAGATTATAGGA+TGG + chr3_3:84980784-84980803 Msa0479820:intron 45.0%
GTGCTAGCATAGTAGCATGT+AGG - chr3_3:84980816-84980835 None:intergenic 45.0%
CACAAGCAATGTAGTCAGGA+TGG - chr3_3:84980840-84980859 None:intergenic 45.0%
TTGCAAAGAGGATTGTGGCA+CGG - chr3_3:84981043-84981062 None:intergenic 45.0%
!! TTGCAAAGTTTTTGGGGAGG+AGG + chr3_3:84981057-84981076 Msa0479820:intron 45.0%
CATATTCTGTGGTCTGAGAG+TGG - chr3_3:84981154-84981173 None:intergenic 45.0%
CAGAAACAGAGAAGTTGGAC+AGG - chr3_3:84981240-84981259 None:intergenic 45.0%
GATGGCAATGAGGAAACTAC+TGG - chr3_3:84981340-84981359 None:intergenic 45.0%
CTCCAGAAACAGAAGAACAC+GGG + chr3_3:84981560-84981579 Msa0479820:intron 45.0%
TCCAGAAACAGAAGAACACG+GGG + chr3_3:84981561-84981580 Msa0479820:intron 45.0%
!! ACTAATTGTTTCTGGGGGGA+TGG + chr3_3:84981614-84981633 Msa0479820:intron 45.0%
!! CTAATTGTTTCTGGGGGGAT+GGG + chr3_3:84981615-84981634 Msa0479820:intron 45.0%
!! TAATTGTTTCTGGGGGGATG+GGG + chr3_3:84981616-84981635 Msa0479820:intron 45.0%
CTCATCCATTGTGATGCATG+AGG - chr3_3:84981752-84981771 None:intergenic 45.0%
! TTCAATTGGCCTGAGCTTTG+AGG + chr3_3:84981789-84981808 Msa0479820:intron 45.0%
! TTTGCGGGTGTTTAGGATTC+CGG - chr3_3:84981970-84981989 None:intergenic 45.0%
TCCTAAACACCCGCAAACTT+CGG + chr3_3:84981973-84981992 Msa0479820:intron 45.0%
CAGGTCTGATTCTTTCTGTG+GGG - chr3_3:84982037-84982056 None:intergenic 45.0%
CCAGGTCTGATTCTTTCTGT+GGG - chr3_3:84982038-84982057 None:intergenic 45.0%
CCACAGAAAGAATCAGACCT+GGG + chr3_3:84982036-84982055 Msa0479820:intron 45.0%
CACAGAAAGAATCAGACCTG+GGG + chr3_3:84982037-84982056 Msa0479820:intron 45.0%
CGGGAATCCATCTTCAACAA+CGG - chr3_3:84982146-84982165 None:intergenic 45.0%
TAGAGGACCAGTCATCTTCA+CGG - chr3_3:84982172-84982191 None:intergenic 45.0%
! TGAAGATGACTGGTCCTCTA+TGG + chr3_3:84982172-84982191 Msa0479820:intron 45.0%
TTGACGAGTCATGGAGAATG+CGG - chr3_3:84982232-84982251 None:intergenic 45.0%
ACTGGGTAATTGACGAGTCA+TGG - chr3_3:84982241-84982260 None:intergenic 45.0%
GGAAGAAGTGATCACTCACT+GGG - chr3_3:84982258-84982277 None:intergenic 45.0%
! AATTTTCCGGTCAGTGGGAA+CGG - chr3_3:84982281-84982300 None:intergenic 45.0%
! TGATGAGGGGGTGAATTTTC+CGG - chr3_3:84982294-84982313 None:intergenic 45.0%
TGTTGCATTGCATGATGAGG+GGG - chr3_3:84982306-84982325 None:intergenic 45.0%
!! TGTTTTTGCTCTCCCTTAGC+AGG + chr3_3:84983080-84983099 Msa0479820:three_prime_UTR 45.0%
GGTAACAACCCATATCCTTC+AGG + chr3_3:84983225-84983244 Msa0479820:three_prime_UTR 45.0%
!!! ATTAATATATTTTTTTAATG+TGG - chr3_3:84980900-84980919 None:intergenic 5.0%
!!! ACATATTTTAAATAAATTAA+AGG - chr3_3:84980984-84981003 None:intergenic 5.0%
AAGTAGGGTGTGCCACACAA+GGG - chr3_3:84978519-84978538 None:intergenic 50.0%
AAAGTAGGGTGTGCCACACA+AGG - chr3_3:84978520-84978539 None:intergenic 50.0%
AATTCGATGGGTGGTCTGAG+AGG + chr3_3:84978751-84978770 Msa0479820:CDS 50.0%
AGGAAGCAACCTCGCTTCTT+GGG + chr3_3:84978774-84978793 Msa0479820:CDS 50.0%
CGAACTTGAGGATCAGGAAC+AGG - chr3_3:84978928-84978947 None:intergenic 50.0%
GAGGAACGAACTTGAGGATC+AGG - chr3_3:84978934-84978953 None:intergenic 50.0%
! ACCACGAAGTTCCCTTTTGG+TGG + chr3_3:84979974-84979993 Msa0479820:intron 50.0%
ACCACCAAAAGGGAACTTCG+TGG - chr3_3:84979978-84979997 None:intergenic 50.0%
TGTTTGCAAGGGAGAGAGAG+TGG + chr3_3:84980282-84980301 Msa0479820:intron 50.0%
GTTTGCAAGGGAGAGAGAGT+GGG + chr3_3:84980283-84980302 Msa0479820:intron 50.0%
TTTGCAAGGGAGAGAGAGTG+GGG + chr3_3:84980284-84980303 Msa0479820:intron 50.0%
TCCGCAAGTGAGAATGAGTG+AGG + chr3_3:84980349-84980368 Msa0479820:intron 50.0%
CCCTCACTCATTCTCACTTG+CGG - chr3_3:84980353-84980372 None:intergenic 50.0%
CCGCAAGTGAGAATGAGTGA+GGG + chr3_3:84980350-84980369 Msa0479820:intron 50.0%
CGCAAGTGAGAATGAGTGAG+GGG + chr3_3:84980351-84980370 Msa0479820:intron 50.0%
ACCGTGACGTCTCTGGTATA+TGG + chr3_3:84980384-84980403 Msa0479820:intron 50.0%
CCCATATACCAGAGACGTCA+CGG - chr3_3:84980388-84980407 None:intergenic 50.0%
CCGTGACGTCTCTGGTATAT+GGG + chr3_3:84980385-84980404 Msa0479820:intron 50.0%
ACGTCTCTGGTATATGGGAG+TGG + chr3_3:84980390-84980409 Msa0479820:intron 50.0%
CGTCTCTGGTATATGGGAGT+GGG + chr3_3:84980391-84980410 Msa0479820:intron 50.0%
!! GGTATATGGGAGTGGGTTGT+AGG + chr3_3:84980398-84980417 Msa0479820:intron 50.0%
GTGAGGAAATCCAAACGCAG+CGG + chr3_3:84979808-84979827 Msa0479820:intron 50.0%
TAAACACGTTCCGCTGCGTT+TGG - chr3_3:84980587-84980606 None:intergenic 50.0%
TTGACCACGAAACTCCCTTC+CGG + chr3_3:84980733-84980752 Msa0479820:intron 50.0%
TGTGATTCAAGCAAGACCGC+CGG - chr3_3:84980755-84980774 None:intergenic 50.0%
CTGACAAGGAAATCGGCATC+AGG - chr3_3:84981197-84981216 None:intergenic 50.0%
CCAGAAACAGAAGAACACGG+GGG + chr3_3:84981562-84981581 Msa0479820:intron 50.0%
!! AATTGTTTCTGGGGGGATGG+GGG + chr3_3:84981617-84981636 Msa0479820:intron 50.0%
GTGCTCCTCATGCATCACAA+TGG + chr3_3:84981744-84981763 Msa0479820:intron 50.0%
CCTAAACACCCGCAAACTTC+GGG + chr3_3:84981974-84981993 Msa0479820:intron 50.0%
TTCTGCCGGAGAAGCAAAGT+CGG + chr3_3:84981997-84982016 Msa0479820:intron 50.0%
CCCACAGAAAGAATCAGACC+TGG + chr3_3:84982035-84982054 Msa0479820:intron 50.0%
CCCAGGTCTGATTCTTTCTG+TGG - chr3_3:84982039-84982058 None:intergenic 50.0%
TATGACTTTGCCGGCGTCTT+TGG - chr3_3:84982096-84982115 None:intergenic 50.0%
AAAGACGCCGGCAAAGTCAT+AGG + chr3_3:84982095-84982114 Msa0479820:intron 50.0%
ATGGACGCCTATGACTTTGC+CGG - chr3_3:84982105-84982124 None:intergenic 50.0%
! AGGCGTCCATCTTTTTGCCT+CGG + chr3_3:84982115-84982134 Msa0479820:intron 50.0%
GTGTCTCCGAGGCAAAAAGA+TGG - chr3_3:84982124-84982143 None:intergenic 50.0%
GGAGACACCGTTGTTGAAGA+TGG + chr3_3:84982136-84982155 Msa0479820:intron 50.0%
ACCAGTCATCTTCACGGACA+CGG - chr3_3:84982166-84982185 None:intergenic 50.0%
ACTGGTCCTCTATGGATCAC+TGG + chr3_3:84982180-84982199 Msa0479820:intron 50.0%
TCATCGCCAGTGATCCATAG+AGG - chr3_3:84982189-84982208 None:intergenic 50.0%
GAGTCATGGAGAATGCGGAT+GGG - chr3_3:84982227-84982246 None:intergenic 50.0%
GGGAAGAAGTGATCACTCAC+TGG - chr3_3:84982259-84982278 None:intergenic 50.0%
! ATTTTCCGGTCAGTGGGAAC+GGG - chr3_3:84982280-84982299 None:intergenic 50.0%
! GGGTGAATTTTCCGGTCAGT+GGG - chr3_3:84982286-84982305 None:intergenic 50.0%
GAAGAACACTCGGCAACGCA+AGG + chr3_3:84978716-84978735 Msa0479820:CDS 55.0%
GAGGAAGCAACCTCGCTTCT+TGG + chr3_3:84978773-84978792 Msa0479820:CDS 55.0%
!! CAGCACGTACTGACTTGGGT+TGG - chr3_3:84979890-84979909 None:intergenic 55.0%
!! ATGGGAGTGGGTTGTAGGAG+TGG + chr3_3:84980403-84980422 Msa0479820:intron 55.0%
TTCAAGCAAGACCGCCGGAA+GGG - chr3_3:84980750-84980769 None:intergenic 55.0%
ATTCAAGCAAGACCGCCGGA+AGG - chr3_3:84980751-84980770 None:intergenic 55.0%
TTCTGTGGTCTGAGAGTGGC+TGG - chr3_3:84981150-84981169 None:intergenic 55.0%
CCCCCGTGTTCTTCTGTTTC+TGG - chr3_3:84981565-84981584 None:intergenic 55.0%
ACAAGGAGCTGAGCCATCTC+CGG - chr3_3:84981853-84981872 None:intergenic 55.0%
ATCATCGGGGCTGAGCTACA+AGG - chr3_3:84981870-84981889 None:intergenic 55.0%
CCCGAAGTTTGCGGGTGTTT+AGG - chr3_3:84981977-84981996 None:intergenic 55.0%
! AGCAGCCGACTTTGCTTCTC+CGG - chr3_3:84982005-84982024 None:intergenic 55.0%
ACCTGGGGAATTTGTGCGTG+AGG + chr3_3:84982052-84982071 Msa0479820:intron 55.0%
ACCTCACGCACAAATTCCCC+AGG - chr3_3:84982056-84982075 None:intergenic 55.0%
TGGGGAATTTGTGCGTGAGG+TGG + chr3_3:84982055-84982074 Msa0479820:intron 55.0%
! GCGTCTTTGGAGATCCACCT+AGG - chr3_3:84982083-84982102 None:intergenic 55.0%
AGGTGGATCTCCAAAGACGC+CGG + chr3_3:84982083-84982102 Msa0479820:intron 55.0%
CTTCAACAACGGTGTCTCCG+AGG - chr3_3:84982135-84982154 None:intergenic 55.0%
CCAGTCATCTTCACGGACAC+GGG - chr3_3:84982165-84982184 None:intergenic 55.0%
CGAGTCATGGAGAATGCGGA+TGG - chr3_3:84982228-84982247 None:intergenic 55.0%
! TTTTCCGGTCAGTGGGAACG+GGG - chr3_3:84982279-84982298 None:intergenic 55.0%
! GGGGTGAATTTTCCGGTCAG+TGG - chr3_3:84982287-84982306 None:intergenic 55.0%
TCGATGGGTGGTCTGAGAGG+AGG + chr3_3:84978754-84978773 Msa0479820:CDS 60.0%
! CTCGCTTCTTGGGTTGTCGC+CGG + chr3_3:84978784-84978803 Msa0479820:CDS 60.0%
AACACGCGGAACGCTGCGTT+TGG - chr3_3:84979821-84979840 None:intergenic 60.0%
! TGGGTTGGACTTCTGCGACC+TGG - chr3_3:84979875-84979894 None:intergenic 60.0%
TTGCGTGACCGTGACGTCTC+TGG + chr3_3:84980377-84980396 Msa0479820:intron 60.0%
ACCACGAAACTCCCTTCCGG+CGG + chr3_3:84980736-84980755 Msa0479820:intron 60.0%
CCAGCGGGTCAGTGATGACA+TGG - chr3_3:84981830-84981849 None:intergenic 60.0%
CCATGTCATCACTGACCCGC+TGG + chr3_3:84981827-84981846 Msa0479820:intron 60.0%
CGGCAGAACCCGAAGTTTGC+GGG - chr3_3:84981985-84982004 None:intergenic 60.0%
CCGGCAGAACCCGAAGTTTG+CGG - chr3_3:84981986-84982005 None:intergenic 60.0%
! CCGCAAACTTCGGGTTCTGC+CGG + chr3_3:84981983-84982002 Msa0479820:intron 60.0%
TTGTGCGTGAGGTGGCTCCT+AGG + chr3_3:84982063-84982082 Msa0479820:intron 60.0%
CCCGTGTCCGTGAAGATGAC+TGG + chr3_3:84982162-84982181 Msa0479820:intron 60.0%
TCTTCCCCGTTCCCACTGAC+CGG + chr3_3:84982272-84982291 Msa0479820:intron 60.0%
CGGCGACAACCCAAGAAGCG+AGG - chr3_3:84978786-84978805 None:intergenic 65.0%
ACCGCCGGAAGGGAGTTTCG+TGG - chr3_3:84980740-84980759 None:intergenic 65.0%
GTCATCACTGACCCGCTGGC+CGG + chr3_3:84981831-84981850 Msa0479820:intron 65.0%
TGCGTGAGGTGGCTCCTAGG+TGG + chr3_3:84982066-84982085 Msa0479820:intron 65.0%
ACTGACCCGCTGGCCGGAGA+TGG + chr3_3:84981837-84981856 Msa0479820:intron 70.0%
CTGAGCCATCTCCGGCCAGC+GGG - chr3_3:84981845-84981864 None:intergenic 70.0%
GCTGAGCCATCTCCGGCCAG+CGG - chr3_3:84981846-84981865 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 84978516 84983292 84978516 ID=Msa0479820;Name=Msa0479820
chr3_3 mRNA 84978516 84983292 84978516 ID=Msa0479820-mRNA-1;Parent=Msa0479820;Name=Msa0479820-mRNA-1;_AED=0.00;_eAED=0.00;_QI=184|1|1|1|0.5|0.33|3|282|101
chr3_3 exon 84978516 84978942 84978516 ID=Msa0479820-mRNA-1:exon:24173;Parent=Msa0479820-mRNA-1
chr3_3 exon 84979031 84979096 84979031 ID=Msa0479820-mRNA-1:exon:24174;Parent=Msa0479820-mRNA-1
chr3_3 exon 84983014 84983292 84983014 ID=Msa0479820-mRNA-1:exon:24175;Parent=Msa0479820-mRNA-1
chr3_3 five_prime_UTR 84978516 84978699 84978516 ID=Msa0479820-mRNA-1:five_prime_utr;Parent=Msa0479820-mRNA-1
chr3_3 CDS 84978700 84978942 84978700 ID=Msa0479820-mRNA-1:cds;Parent=Msa0479820-mRNA-1
chr3_3 CDS 84979031 84979093 84979031 ID=Msa0479820-mRNA-1:cds;Parent=Msa0479820-mRNA-1
chr3_3 three_prime_UTR 84979094 84979096 84979094 ID=Msa0479820-mRNA-1:three_prime_utr;Parent=Msa0479820-mRNA-1
chr3_3 three_prime_UTR 84983014 84983292 84983014 ID=Msa0479820-mRNA-1:three_prime_utr;Parent=Msa0479820-mRNA-1
Gene Sequence

>Msa0479820

ATGGCGAGTAACTGGAGAAGAACACTCGGCAACGCAAGGTCGTTCGTGAACAATTCGATGGGTGGTCTGAGAGGAGGAAGCAACCTCGCTTCTTGGGTTGTCGCCGGAACCCTAGCTTATTATCTTTGGATCAAACCTGATCAAGATCTCAAACGCGAACAACAAGCTAAAGCTGCTATTGCTGCTTCCTCTGATGATCCTTTTCGCTATGTTGAAACTCGAAAACCTGTTCCTGATCCTCAAGTTACTGGTTTGATATATGGAAACAACAACAACAAAGACAAATCATTTAGGGCAGATGATTAG
Protein sequence

>Msa0479820

MASNWRRTLGNARSFVNNSMGGLRGGSNLASWVVAGTLAYYLWIKPDQDLKREQQAKAAIAASSDDPFRYVETRKPVPDPQVTGLIYGNNNNKDKSFRADD*