Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121620 | XP_013468154.1 | 79.167 | 336 | 18 | 3 | 1 | 287 | 1 | 333 | 7.69e-162 | 463 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121620 | sp|Q9SJL2|HIP5_ARATH | 38.268 | 358 | 97 | 13 | 30 | 287 | 53 | 386 | 4.28e-43 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121620 | A0A072VKN3 | 79.167 | 336 | 18 | 3 | 1 | 287 | 1 | 333 | 3.68e-162 | 463 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004880 | Msa0121620 | 0.802601 | 5.193126e-49 | -8.615850e-47 |
| Msa0015300 | Msa0121620 | 0.814112 | 1.818734e-51 | -8.615850e-47 |
| Msa0025740 | Msa0121620 | 0.920837 | 7.709660e-88 | -8.615850e-47 |
| Msa0043980 | Msa0121620 | 0.823609 | 1.263040e-53 | -8.615850e-47 |
| Msa0051790 | Msa0121620 | 0.803630 | 3.180314e-49 | -8.615850e-47 |
| Msa0056030 | Msa0121620 | 0.808313 | 3.292872e-50 | -8.615850e-47 |
| Msa0073460 | Msa0121620 | 0.894516 | 2.292128e-75 | -8.615850e-47 |
| Msa0089360 | Msa0121620 | 0.809754 | 1.618365e-50 | -8.615850e-47 |
| Msa0094920 | Msa0121620 | 0.835617 | 1.511935e-56 | -8.615850e-47 |
| Msa0121590 | Msa0121620 | 0.819287 | 1.257118e-52 | -8.615850e-47 |
| Msa0121620 | Msa0149000 | 0.825446 | 4.668191e-54 | -8.615850e-47 |
| Msa0121620 | Msa0157100 | 0.801752 | 7.763628e-49 | -8.615850e-47 |
| Msa0121620 | Msa0165970 | 0.898884 | 3.422427e-77 | -8.615850e-47 |
| Msa0121620 | Msa0170570 | 0.815426 | 9.299875e-52 | -8.615850e-47 |
| Msa0121620 | Msa0173990 | 0.804019 | 2.640768e-49 | -8.615850e-47 |
| Msa0121620 | Msa0184020 | 0.803769 | 2.976135e-49 | -8.615850e-47 |
| Msa0121620 | Msa0217680 | 0.822187 | 2.708401e-53 | -8.615850e-47 |
| Msa0121620 | Msa0220580 | 0.828733 | 7.630445e-55 | -8.615850e-47 |
| Msa0121620 | Msa0236440 | 0.813550 | 2.418276e-51 | -8.615850e-47 |
| Msa0121620 | Msa0243480 | 0.805566 | 1.254685e-49 | -8.615850e-47 |
| Msa0121620 | Msa0260210 | 0.839174 | 1.855669e-57 | -8.615850e-47 |
| Msa0121620 | Msa0274350 | 0.846617 | 1.941236e-59 | -8.615850e-47 |
| Msa0121620 | Msa0276920 | 0.802979 | 4.338103e-49 | -8.615850e-47 |
| Msa0121620 | Msa0280090 | 0.805622 | 1.221262e-49 | -8.615850e-47 |
| Msa0121620 | Msa0280630 | 0.840448 | 8.641876e-58 | -8.615850e-47 |
| Msa0121620 | Msa0282250 | 0.817704 | 2.872839e-52 | -8.615850e-47 |
| Msa0121620 | Msa0287410 | 0.826696 | 2.353821e-54 | -8.615850e-47 |
| Msa0121620 | Msa0291500 | 0.811343 | 7.339763e-51 | -8.615850e-47 |
| Msa0121620 | Msa0304290 | 0.839973 | 1.149709e-57 | -8.615850e-47 |
| Msa0121620 | Msa0304330 | 0.839546 | 1.484998e-57 | -8.615850e-47 |
| Msa0121620 | Msa0305890 | 0.824883 | 6.341787e-54 | -8.615850e-47 |
| Msa0121620 | Msa0311700 | 0.805323 | 1.410905e-49 | -8.615850e-47 |
| Msa0121620 | Msa0314250 | 0.866013 | 3.887613e-65 | -8.615850e-47 |
| Msa0121620 | Msa0319880 | 0.819264 | 1.272327e-52 | -8.615850e-47 |
| Msa0121620 | Msa0325850 | 0.803466 | 3.440495e-49 | -8.615850e-47 |
| Msa0121620 | Msa0326110 | 0.801409 | 9.128703e-49 | -8.615850e-47 |
| Msa0121620 | Msa0329350 | 0.818982 | 1.475349e-52 | -8.615850e-47 |
| Msa0121620 | Msa0340810 | 0.823937 | 1.058524e-53 | -8.615850e-47 |
| Msa0121620 | Msa0351810 | 0.817520 | 3.160519e-52 | -8.615850e-47 |
| Msa0121620 | Msa0379550 | 0.825869 | 3.705120e-54 | -8.615850e-47 |
| Msa0121620 | Msa0379640 | 0.825821 | 3.803420e-54 | -8.615850e-47 |
| Msa0121620 | Msa0394340 | 0.803853 | 2.858428e-49 | -8.615850e-47 |
| Msa0121620 | Msa0426330 | 0.801357 | 9.353588e-49 | -8.615850e-47 |
| Msa0121620 | Msa0428930 | 0.801108 | 1.051750e-48 | -8.615850e-47 |
| Msa0121620 | Msa0433360 | 0.815437 | 9.250896e-52 | -8.615850e-47 |
| Msa0121620 | Msa0458440 | 0.802148 | 6.435641e-49 | -8.615850e-47 |
| Msa0121620 | Msa0475410 | 0.832351 | 9.933295e-56 | -8.615850e-47 |
| Msa0121620 | Msa0477080 | 0.815752 | 7.871641e-52 | -8.615850e-47 |
| Msa0121620 | Msa0479820 | 0.807267 | 5.495822e-50 | -8.615850e-47 |
| Msa0121620 | Msa0484780 | 0.850894 | 1.263530e-60 | -8.615850e-47 |
| Msa0121620 | Msa0493630 | 0.822968 | 1.782979e-53 | -8.615850e-47 |
| Msa0121620 | Msa0521430 | 0.826726 | 2.315369e-54 | -8.615850e-47 |
| Msa0121620 | Msa0530650 | 0.804368 | 2.234404e-49 | -8.615850e-47 |
| Msa0121620 | Msa0555200 | 0.836734 | 7.865841e-57 | -8.615850e-47 |
| Msa0121620 | Msa0556860 | 0.806396 | 8.394152e-50 | -8.615850e-47 |
| Msa0121620 | Msa0562440 | 0.801825 | 7.499065e-49 | -8.615850e-47 |
| Msa0121620 | Msa0594790 | 0.814476 | 1.511328e-51 | -8.615850e-47 |
| Msa0121620 | Msa0601290 | 0.804960 | 1.680399e-49 | -8.615850e-47 |
| Msa0121620 | Msa0607050 | 0.803246 | 3.820180e-49 | -8.615850e-47 |
| Msa0121620 | Msa0608710 | 0.858833 | 6.281300e-63 | -8.615850e-47 |
| Msa0121620 | Msa0637070 | 0.817304 | 3.534194e-52 | -8.615850e-47 |
| Msa0121620 | Msa0644840 | 0.801541 | 8.578718e-49 | -8.615850e-47 |
| Msa0121620 | Msa0682550 | 0.804290 | 2.319615e-49 | -8.615850e-47 |
| Msa0121620 | Msa0711100 | 0.801251 | 9.832015e-49 | -8.615850e-47 |
| Msa0121620 | Msa0731180 | 0.810008 | 1.427118e-50 | -8.615850e-47 |
| Msa0121620 | Msa0742390 | 0.828478 | 8.790731e-55 | -8.615850e-47 |
| Msa0121620 | Msa0757080 | 0.801427 | 9.052032e-49 | -8.615850e-47 |
| Msa0121620 | Msa0790660 | -0.806661 | 7.381995e-50 | -8.615850e-47 |
| Msa0121620 | Msa0795080 | 0.827241 | 1.743889e-54 | -8.615850e-47 |
| Msa0121620 | Msa0802010 | 0.813549 | 2.420020e-51 | -8.615850e-47 |
| Msa0121620 | Msa0816590 | 0.801206 | 1.004430e-48 | -8.615850e-47 |
| Msa0121620 | Msa0832150 | 0.808747 | 2.661121e-50 | -8.615850e-47 |
| Msa0121620 | Msa0844960 | 0.803477 | 3.421932e-49 | -8.615850e-47 |
| Msa0121620 | Msa0866950 | 0.803889 | 2.810611e-49 | -8.615850e-47 |
| Msa0121620 | Msa0869120 | 0.805208 | 1.491728e-49 | -8.615850e-47 |
| Msa0121620 | Msa0876200 | 0.802185 | 6.325533e-49 | -8.615850e-47 |
| Msa0121620 | Msa0876580 | 0.807658 | 4.539589e-50 | -8.615850e-47 |
| Msa0121620 | Msa0897080 | 0.815113 | 1.091757e-51 | -8.615850e-47 |
| Msa0121620 | Msa0927670 | 0.810318 | 1.223664e-50 | -8.615850e-47 |
| Msa0121620 | Msa0932830 | 0.810848 | 9.397746e-51 | -8.615850e-47 |
| Msa0121620 | Msa0933230 | 0.819036 | 1.433784e-52 | -8.615850e-47 |
| Msa0121620 | Msa0933310 | 0.827347 | 1.644732e-54 | -8.615850e-47 |
| Msa0121620 | Msa0958920 | 0.817723 | 2.844784e-52 | -8.615850e-47 |
| Msa0121620 | Msa0960160 | 0.817810 | 2.718607e-52 | -8.615850e-47 |
| Msa0121620 | Msa0971020 | 0.821374 | 4.178319e-53 | -8.615850e-47 |
| Msa0121620 | Msa0971090 | 0.810115 | 1.352911e-50 | -8.615850e-47 |
| Msa0121620 | Msa0974630 | 0.805317 | 1.415454e-49 | -8.615850e-47 |
| Msa0121620 | Msa0999040 | 0.817098 | 3.933276e-52 | -8.615850e-47 |
| Msa0121620 | Msa1023180 | 0.803268 | 3.780790e-49 | -8.615850e-47 |
| Msa0121620 | Msa1039880 | 0.804963 | 1.678363e-49 | -8.615850e-47 |
| Msa0121620 | Msa1043050 | 0.804779 | 1.833623e-49 | -8.615850e-47 |
| Msa0121620 | Msa1043390 | 0.802940 | 4.420192e-49 | -8.615850e-47 |
| Msa0121620 | Msa1043450 | 0.801414 | 9.105913e-49 | -8.615850e-47 |
| Msa0121620 | Msa1063510 | 0.800685 | 1.283176e-48 | -8.615850e-47 |
| Msa0121620 | Msa1082500 | 0.824802 | 6.625569e-54 | -8.615850e-47 |
| Msa0121620 | Msa1092090 | 0.816492 | 5.376923e-52 | -8.615850e-47 |
| Msa0121620 | Msa1098420 | 0.801799 | 7.591523e-49 | -8.615850e-47 |
| Msa0121620 | Msa1102790 | 0.819680 | 1.022853e-52 | -8.615850e-47 |
| Msa0121620 | Msa1150710 | 0.802656 | 5.059250e-49 | -8.615850e-47 |
| Msa0121620 | Msa1151710 | 0.819597 | 1.068122e-52 | -8.615850e-47 |
| Msa0121620 | Msa1151720 | 0.814471 | 1.515210e-51 | -8.615850e-47 |
| Msa0121620 | Msa1172670 | 0.809203 | 2.124674e-50 | -8.615850e-47 |
| Msa0121620 | Msa1174040 | 0.830826 | 2.359772e-55 | -8.615850e-47 |
| Msa0121620 | Msa1201120 | 0.822041 | 2.927819e-53 | -8.615850e-47 |
| Msa0121620 | Msa1201560 | 0.811621 | 6.388455e-51 | -8.615850e-47 |
| Msa0121620 | Msa1205370 | 0.803439 | 3.484822e-49 | -8.615850e-47 |
| Msa0121620 | Msa1233500 | 0.839482 | 1.543667e-57 | -8.615850e-47 |
| Msa0121620 | Msa1267430 | 0.803862 | 2.846399e-49 | -8.615850e-47 |
| Msa0121620 | Msa1275770 | 0.806421 | 8.295532e-50 | -8.615850e-47 |
| Msa0121620 | Msa1276440 | 0.828725 | 7.663159e-55 | -8.615850e-47 |
| Msa0121620 | Msa1294480 | 0.813818 | 2.110876e-51 | -8.615850e-47 |
| Msa0121620 | Msa1296940 | 0.812922 | 3.321793e-51 | -8.615850e-47 |
| Msa0121620 | Msa1305660 | 0.802229 | 6.195317e-49 | -8.615850e-47 |
| Msa0121620 | Msa1306750 | 0.812437 | 4.242427e-51 | -8.615850e-47 |
| Msa0121620 | Msa1314340 | 0.802665 | 5.036527e-49 | -8.615850e-47 |
| Msa0121620 | Msa1320620 | 0.800268 | 1.560951e-48 | -8.615850e-47 |
| Msa0121620 | Msa1331320 | 0.801297 | 9.624160e-49 | -8.615850e-47 |
| Msa0121620 | Msa1333410 | 0.816683 | 4.872904e-52 | -8.615850e-47 |
| Msa0121620 | Msa1339190 | 0.802104 | 6.572249e-49 | -8.615850e-47 |
| Msa0121620 | Msa1340650 | 0.805027 | 1.627249e-49 | -8.615850e-47 |
| Msa0121620 | Msa1358610 | -0.801027 | 1.092685e-48 | -8.615850e-47 |
| Msa0121620 | Msa1367750 | 0.819492 | 1.128861e-52 | -8.615850e-47 |
| Msa0121620 | Msa1389400 | 0.829938 | 3.889731e-55 | -8.615850e-47 |
| Msa0121620 | Msa1411020 | 0.812768 | 3.590629e-51 | -8.615850e-47 |
| Msa0121620 | Msa1414690 | 0.823182 | 1.589300e-53 | -8.615850e-47 |
| Msa0121620 | Msa1420140 | 0.823328 | 1.469343e-53 | -8.615850e-47 |
| Msa0121620 | Msa1424290 | 0.811477 | 6.865930e-51 | -8.615850e-47 |
| Msa0121620 | Msa1424450 | 0.813737 | 2.200284e-51 | -8.615850e-47 |
| Msa0121620 | Msa1425100 | 0.811943 | 5.436978e-51 | -8.615850e-47 |
| Msa0121620 | Msa1434350 | 0.809754 | 1.618365e-50 | -8.615850e-47 |
| Msa0121620 | Msa1435370 | 0.802226 | 6.203825e-49 | -8.615850e-47 |
| Msa0121620 | Msa1439320 | 0.812789 | 3.552082e-51 | -8.615850e-47 |
| Msa0121620 | Msa1444740 | 0.866294 | 3.168608e-65 | -8.615850e-47 |
| Msa0121620 | Msa1453080 | 0.810811 | 9.575217e-51 | -8.615850e-47 |
| Msa0121620 | Msa1462290 | 0.801661 | 8.105391e-49 | -8.615850e-47 |
| Msa0121620 | Msa1463670 | 0.803520 | 3.352430e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121620 | MtrunA17_Chr1g0180631 | 79.167 | 336 | 18 | 3 | 1 | 287 | 1 | 333 | 7.08e-166 | 463 |
| Msa0121620 | MtrunA17_Chr7g0264601 | 41.399 | 343 | 109 | 8 | 29 | 287 | 15 | 349 | 2.24e-58 | 190 |
| Msa0121620 | MtrunA17_Chr7g0264601 | 40.541 | 74 | 41 | 1 | 90 | 160 | 14 | 87 | 8.60e-11 | 62.0 |
| Msa0121620 | MtrunA17_Chr4g0028461 | 35.274 | 292 | 119 | 3 | 30 | 287 | 69 | 324 | 5.25e-38 | 136 |
| Msa0121620 | MtrunA17_Chr2g0327311 | 35.882 | 170 | 69 | 3 | 26 | 155 | 64 | 233 | 4.28e-26 | 105 |
| Msa0121620 | MtrunA17_Chr8g0386231 | 32.738 | 168 | 75 | 2 | 25 | 154 | 49 | 216 | 6.66e-21 | 90.5 |
| Msa0121620 | MtrunA17_Chr3g0094841 | 29.379 | 177 | 93 | 2 | 29 | 175 | 28 | 202 | 3.09e-20 | 87.4 |
| Msa0121620 | MtrunA17_Chr5g0429111 | 30.464 | 151 | 79 | 1 | 30 | 154 | 56 | 206 | 4.85e-19 | 85.5 |
| Msa0121620 | MtrunA17_Chr3g0128091 | 26.923 | 338 | 140 | 8 | 1 | 286 | 1 | 283 | 6.33e-18 | 81.6 |
| Msa0121620 | MtrunA17_Chr2g0290471 | 31.515 | 165 | 76 | 3 | 26 | 154 | 33 | 196 | 4.84e-17 | 79.0 |
| Msa0121620 | MtrunA17_Chr3g0132061 | 27.950 | 161 | 81 | 2 | 29 | 154 | 36 | 196 | 1.55e-15 | 75.5 |
| Msa0121620 | MtrunA17_Chr3g0132051 | 28.302 | 159 | 80 | 2 | 29 | 153 | 36 | 194 | 1.97e-15 | 74.3 |
| Msa0121620 | MtrunA17_Chr6g0454851 | 37.634 | 93 | 49 | 1 | 26 | 118 | 17 | 100 | 1.21e-13 | 71.2 |
| Msa0121620 | MtrunA17_Chr8g0337951 | 23.158 | 285 | 139 | 6 | 30 | 286 | 32 | 264 | 1.74e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0121620 | AT2G36950.1 | 38.268 | 358 | 97 | 13 | 30 | 287 | 53 | 386 | 4.36e-44 | 154 |
| Msa0121620 | AT5G60800.1 | 41.262 | 206 | 75 | 2 | 1 | 161 | 1 | 205 | 7.01e-33 | 122 |
| Msa0121620 | AT5G60800.2 | 41.262 | 206 | 75 | 2 | 1 | 161 | 1 | 205 | 1.40e-32 | 122 |
| Msa0121620 | AT5G03380.2 | 38.843 | 242 | 106 | 7 | 87 | 287 | 125 | 365 | 3.22e-31 | 119 |
| Msa0121620 | AT5G03380.2 | 53.125 | 64 | 30 | 0 | 32 | 95 | 2 | 65 | 4.06e-14 | 72.0 |
| Msa0121620 | AT5G03380.2 | 41.667 | 96 | 50 | 2 | 93 | 184 | 1 | 94 | 1.07e-11 | 65.1 |
| Msa0121620 | AT5G03380.1 | 38.843 | 242 | 106 | 7 | 87 | 287 | 152 | 392 | 3.92e-31 | 120 |
| Msa0121620 | AT5G03380.1 | 47.368 | 95 | 47 | 1 | 1 | 95 | 1 | 92 | 2.56e-16 | 79.0 |
| Msa0121620 | AT5G03380.1 | 43.750 | 96 | 48 | 2 | 89 | 180 | 24 | 117 | 1.33e-13 | 70.9 |
| Msa0121620 | AT2G28090.1 | 37.714 | 175 | 78 | 3 | 12 | 155 | 14 | 188 | 3.81e-23 | 95.5 |
| Msa0121620 | AT3G02960.1 | 32.468 | 154 | 76 | 3 | 29 | 154 | 38 | 191 | 8.96e-23 | 94.7 |
| Msa0121620 | AT5G50740.5 | 29.814 | 161 | 78 | 2 | 29 | 154 | 29 | 189 | 1.36e-19 | 86.7 |
| Msa0121620 | AT5G50740.1 | 29.814 | 161 | 78 | 2 | 29 | 154 | 29 | 189 | 1.36e-19 | 86.7 |
| Msa0121620 | AT5G50740.3 | 29.814 | 161 | 78 | 2 | 29 | 154 | 36 | 196 | 1.73e-19 | 86.7 |
| Msa0121620 | AT5G24580.2 | 30.065 | 153 | 80 | 1 | 30 | 155 | 58 | 210 | 5.45e-18 | 82.8 |
| Msa0121620 | AT5G24580.4 | 30.065 | 153 | 80 | 1 | 30 | 155 | 59 | 211 | 5.56e-18 | 82.8 |
| Msa0121620 | AT5G24580.1 | 30.065 | 153 | 80 | 1 | 30 | 155 | 59 | 211 | 5.56e-18 | 82.8 |
| Msa0121620 | AT5G63530.2 | 30.247 | 162 | 77 | 2 | 29 | 154 | 60 | 221 | 1.01e-16 | 79.3 |
| Msa0121620 | AT5G63530.1 | 30.247 | 162 | 77 | 2 | 29 | 154 | 75 | 236 | 1.10e-16 | 79.7 |
| Msa0121620 | AT5G24580.3 | 28.105 | 153 | 80 | 2 | 30 | 155 | 59 | 208 | 8.71e-15 | 73.6 |
| Msa0121620 | AT1G29000.1 | 26.708 | 161 | 82 | 1 | 30 | 154 | 18 | 178 | 5.94e-14 | 70.9 |
| Msa0121620 | AT1G29000.2 | 26.708 | 161 | 82 | 1 | 30 | 154 | 18 | 178 | 5.94e-14 | 70.9 |
| Msa0121620 | AT5G50740.2 | 30.328 | 122 | 50 | 2 | 29 | 115 | 29 | 150 | 2.39e-11 | 61.6 |
| Msa0121620 | AT5G50740.4 | 30.328 | 122 | 50 | 2 | 29 | 115 | 36 | 157 | 4.63e-11 | 60.8 |
Find 90 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTGAGGAGGTGGATTATT+AGG | 0.166312 | 1_3:+47635280 | None:intergenic |
| CGTTAAATTGCAAGAGAAAT+TGG | 0.249649 | 1_3:-47636240 | Msa0121620:CDS |
| AATAGGATATGTTAGATATT+AGG | 0.278926 | 1_3:+47636737 | None:intergenic |
| CAACATTATATGGAGAATAA+TGG | 0.281211 | 1_3:-47635370 | Msa0121620:CDS |
| TAATAATAATCAACATTATA+TGG | 0.312578 | 1_3:-47635380 | Msa0121620:CDS |
| CAATTTCTCTTGCAATTTAA+CGG | 0.317272 | 1_3:+47636241 | None:intergenic |
| TCCTTCATCAGCTTTCTTCT+CGG | 0.317840 | 1_3:+47636530 | None:intergenic |
| AGAGTGGGGAGAGAAGTATA+AGG | 0.321545 | 1_3:+47636802 | None:intergenic |
| CCATGTGTGTGATTGGTAAT+AGG | 0.370399 | 1_3:+47636720 | None:intergenic |
| TACCTCACCCACCGTTTCAT+TGG | 0.371572 | 1_3:-47636842 | Msa0121620:five_prime_UTR |
| AACATTATATGGAGAATAAT+GGG | 0.379007 | 1_3:-47635369 | Msa0121620:CDS |
| GAAGGTGGAGGTTAATAAAA+TGG | 0.389488 | 1_3:-47635509 | Msa0121620:CDS |
| TGGAGAATCCTGTCCAGATT+TGG | 0.391214 | 1_3:-47634997 | Msa0121620:three_prime_UTR |
| GTGAGGTAATGGGATTGGTT+AGG | 0.394881 | 1_3:+47636857 | None:intergenic |
| TGAAGCTAGATCTGCTTTAA+CGG | 0.396241 | 1_3:+47636295 | None:intergenic |
| TGAAACGGTGGGTGAGGTAA+TGG | 0.399876 | 1_3:+47636846 | None:intergenic |
| AGATACTCTATCAAATCCTT+TGG | 0.402024 | 1_3:+47635676 | None:intergenic |
| TCAAACAAAGTGACAGTTAC+CGG | 0.410265 | 1_3:-47636275 | Msa0121620:CDS |
| CCAAATCCTTGTCTCCATCT+AGG | 0.412236 | 1_3:+47635722 | None:intergenic |
| TGAGGTAATGGGATTGGTTA+GGG | 0.418479 | 1_3:+47636858 | None:intergenic |
| GTTGAAACGGCGAACCTAGA+TGG | 0.423969 | 1_3:-47635736 | Msa0121620:CDS |
| TTTCTCTTCCAAATCTGGAC+AGG | 0.432944 | 1_3:+47634989 | None:intergenic |
| CCTAGATGGAGACAAGGATT+TGG | 0.435138 | 1_3:-47635722 | Msa0121620:CDS |
| TCTGAGGAGGTGGATTATTA+GGG | 0.436820 | 1_3:+47635281 | None:intergenic |
| ACCTCTCCCATGTGTGTGAT+TGG | 0.439873 | 1_3:+47636713 | None:intergenic |
| AAATATTAGACTGGCTCAGC+TGG | 0.440021 | 1_3:-47635021 | Msa0121620:three_prime_UTR |
| GAGTGGGGAGAGAAGTATAA+GGG | 0.443777 | 1_3:+47636803 | None:intergenic |
| GAAACGGTGGGTGAGGTAAT+GGG | 0.452517 | 1_3:+47636847 | None:intergenic |
| ATTAGACTGGCTCAGCTGGC+TGG | 0.453511 | 1_3:-47635017 | Msa0121620:three_prime_UTR |
| CGGTGGAGATGCGGCGAAGG+TGG | 0.453941 | 1_3:-47635524 | Msa0121620:CDS |
| TTTAACGGCGTCAAATTTAC+CGG | 0.454292 | 1_3:+47636256 | None:intergenic |
| AAGTCGAGTTTGTAAACAAC+AGG | 0.458834 | 1_3:+47636471 | None:intergenic |
| TATTAGGATTGTGGTGTTGT+GGG | 0.465636 | 1_3:+47636753 | None:intergenic |
| TGAAAAGAAAGAGAAAGAAA+AGG | 0.465817 | 1_3:-47635575 | Msa0121620:CDS |
| ACAGGAGCAGGAGCAGGAAC+AGG | 0.469773 | 1_3:+47636489 | None:intergenic |
| GGGAGAGAAGTATAAGGGAG+AGG | 0.494183 | 1_3:+47636808 | None:intergenic |
| AAGTAGTAACTATGCTGGTA+TGG | 0.497316 | 1_3:-47635440 | Msa0121620:CDS |
| GAAGAAAGAAGAGAAGAAAG+TGG | 0.498576 | 1_3:-47635548 | Msa0121620:CDS |
| AACCAATGAAACGGTGGGTG+AGG | 0.500842 | 1_3:+47636840 | None:intergenic |
| GCTCCGATGTATTATTATGA+AGG | 0.510924 | 1_3:-47635466 | Msa0121620:CDS |
| TGGAGATGCGGCGAAGGTGG+AGG | 0.511085 | 1_3:-47635521 | Msa0121620:CDS |
| TTTCATCATCAACCTGGGTA+TGG | 0.520569 | 1_3:-47635412 | Msa0121620:CDS |
| AATATATATAACCAATGAAA+CGG | 0.528489 | 1_3:+47636831 | None:intergenic |
| CACATGAGAGAACAAGCATT+GGG | 0.529344 | 1_3:+47635241 | None:intergenic |
| TCACTGAACATCTGAGGAGG+TGG | 0.529922 | 1_3:+47635271 | None:intergenic |
| TTATTAGGGTGCATGTAATA+CGG | 0.531642 | 1_3:+47635295 | None:intergenic |
| ACCGAGAAGAAAGCTGATGA+AGG | 0.540526 | 1_3:-47636531 | Msa0121620:CDS |
| GGTACTTGAGGTGGCTGCAT+AGG | 0.542416 | 1_3:+47635316 | None:intergenic |
| TTATTAAACAGGAGTTGAAA+CGG | 0.544576 | 1_3:-47635749 | Msa0121620:intron |
| TATAGAGATAAATATTAGAC+TGG | 0.545083 | 1_3:-47635030 | Msa0121620:three_prime_UTR |
| TCACATGAGAGAACAAGCAT+TGG | 0.545482 | 1_3:+47635240 | None:intergenic |
| GGTGGGTGAGGTAATGGGAT+TGG | 0.546089 | 1_3:+47636852 | None:intergenic |
| CATCAACCTGGGTATGGTGG+TGG | 0.547203 | 1_3:-47635406 | Msa0121620:CDS |
| AAAGAAAGAGAAAGAAAAGG+CGG | 0.548738 | 1_3:-47635572 | Msa0121620:CDS |
| CGAAGTGCTCGTCATTTCGC+TGG | 0.552259 | 1_3:-47636417 | Msa0121620:intron |
| ATATTAGGATTGTGGTGTTG+TGG | 0.552797 | 1_3:+47636752 | None:intergenic |
| TATGTTAGATATTAGGATTG+TGG | 0.552830 | 1_3:+47636744 | None:intergenic |
| AGTTTGTAAACAACAGGAGC+AGG | 0.553378 | 1_3:+47636477 | None:intergenic |
| GGTCAAAGTAGTAACTATGC+TGG | 0.556121 | 1_3:-47635445 | Msa0121620:CDS |
| AAGGATTTGGTAACAGTGAA+AGG | 0.556405 | 1_3:-47635709 | Msa0121620:CDS |
| GGACGGTGGAGATGCGGCGA+AGG | 0.557262 | 1_3:-47635527 | Msa0121620:CDS |
| GATCAATTTCATCATCAACC+TGG | 0.560641 | 1_3:-47635418 | Msa0121620:CDS |
| CCTATTACCAATCACACACA+TGG | 0.561709 | 1_3:-47636720 | Msa0121620:exon |
| AGAATCATTATGAAGTTCAA+AGG | 0.563915 | 1_3:-47635899 | Msa0121620:intron |
| TAAACAACAGGAGCAGGAGC+AGG | 0.567749 | 1_3:+47636483 | None:intergenic |
| TAATACATCGGAGCTTGTAT+CGG | 0.568277 | 1_3:+47635475 | None:intergenic |
| GAAGAGAAGAAAGTGGACGG+TGG | 0.569092 | 1_3:-47635541 | Msa0121620:CDS |
| GAAAGTGGACGGTGGAGATG+CGG | 0.575166 | 1_3:-47635533 | Msa0121620:CDS |
| CATCATCAACCTGGGTATGG+TGG | 0.581791 | 1_3:-47635409 | Msa0121620:CDS |
| GAAAGGAACAATGGAACCAA+AGG | 0.586961 | 1_3:-47635692 | Msa0121620:CDS |
| TATATAACCAATGAAACGGT+GGG | 0.588620 | 1_3:+47636835 | None:intergenic |
| AAAGAAGAGAAGAAAGTGGA+CGG | 0.599132 | 1_3:-47635544 | Msa0121620:CDS |
| ATCAATTTCATCATCAACCT+GGG | 0.600796 | 1_3:-47635417 | Msa0121620:CDS |
| GGGTATATGAATATGAATCA+TGG | 0.602668 | 1_3:-47635349 | Msa0121620:CDS |
| GGTAACAGTGAAAGGAACAA+TGG | 0.605375 | 1_3:-47635701 | Msa0121620:CDS |
| ACCAATCACACACATGGGAG+AGG | 0.606723 | 1_3:-47636714 | Msa0121620:intron |
| ATGAATATGAATCATGGTGG+TGG | 0.613279 | 1_3:-47635343 | Msa0121620:CDS |
| TGCATGTAATACGGTACTTG+AGG | 0.613430 | 1_3:+47635304 | None:intergenic |
| TTCTCATCACTGAACATCTG+AGG | 0.619062 | 1_3:+47635265 | None:intergenic |
| ATATATAACCAATGAAACGG+TGG | 0.620687 | 1_3:+47636834 | None:intergenic |
| AAACTCGACTTACATTGTGA+AGG | 0.624408 | 1_3:-47636459 | Msa0121620:CDS |
| TGACCTTCATAATAATACAT+CGG | 0.624646 | 1_3:+47635463 | None:intergenic |
| TTATAACCACCACCATACCC+AGG | 0.654821 | 1_3:+47635400 | None:intergenic |
| TCATCACTGAACATCTGAGG+AGG | 0.657828 | 1_3:+47635268 | None:intergenic |
| ATGTAATACGGTACTTGAGG+TGG | 0.661458 | 1_3:+47635307 | None:intergenic |
| GAGTGTGTATACATTATGCA+CGG | 0.664534 | 1_3:-47635204 | Msa0121620:three_prime_UTR |
| AAGATCAGATTGCACTGTGA+CGG | 0.678394 | 1_3:-47635941 | Msa0121620:CDS |
| GGCGAACCTAGATGGAGACA+AGG | 0.682048 | 1_3:-47635728 | Msa0121620:CDS |
| CTATTACCAATCACACACAT+GGG | 0.698797 | 1_3:-47636719 | Msa0121620:exon |
| TATATGAATATGAATCATGG+TGG | 0.739870 | 1_3:-47635346 | Msa0121620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTAATTAATACAAAGT+CGG | + | chr1_3:47635716-47635735 | None:intergenic | 10.0% |
| !! | TAATAATAATCAACATTATA+TGG | - | chr1_3:47636332-47636351 | Msa0121620:intron | 10.0% |
| !!! | AAATTTTGTTTATTTGTTTA+TGG | - | chr1_3:47636839-47636858 | Msa0121620:five_prime_UTR | 10.0% |
| !! | AATATATATAACCAATGAAA+CGG | + | chr1_3:47634884-47634903 | None:intergenic | 15.0% |
| !! | ATATACTAATACTAATGAAA+AGG | + | chr1_3:47635042-47635061 | None:intergenic | 15.0% |
| !! | AGAATATTCATTAACAAATT+TGG | - | chr1_3:47635374-47635393 | Msa0121620:CDS | 15.0% |
| !! | AATTAATTAATTACCTCTTT+AGG | + | chr1_3:47635656-47635675 | None:intergenic | 15.0% |
| !!! | ATTTATTAATTTTCAGAGTA+CGG | - | chr1_3:47635740-47635759 | Msa0121620:CDS | 15.0% |
| !!! | CGTTATTTTATTTGAAATTT+AGG | + | chr1_3:47635849-47635868 | None:intergenic | 15.0% |
| !!! | TTAATTAATTGTTAATTTGG+TGG | - | chr1_3:47635931-47635950 | Msa0121620:CDS | 15.0% |
| !! | AATAGGATATGTTAGATATT+AGG | + | chr1_3:47634978-47634997 | None:intergenic | 20.0% |
| !!! | AACAAATTTGGAATATATTC+AGG | - | chr1_3:47635386-47635405 | Msa0121620:CDS | 20.0% |
| !! | AACATTATATGGAGAATAAT+GGG | - | chr1_3:47636343-47636362 | Msa0121620:intron | 20.0% |
| !!! | CATATAGAGAAATTTTATGT+TGG | - | chr1_3:47636641-47636660 | Msa0121620:intron | 20.0% |
| !! | TATAGAGATAAATATTAGAC+TGG | - | chr1_3:47636682-47636701 | Msa0121620:intron | 20.0% |
| ! | TATGTTAGATATTAGGATTG+TGG | + | chr1_3:47634971-47634990 | None:intergenic | 25.0% |
| ! | AGGAATATTGAATATGCTAT+TGG | + | chr1_3:47635075-47635094 | None:intergenic | 25.0% |
| ! | AATAGCATATTCAATATTCC+TGG | - | chr1_3:47635074-47635093 | Msa0121620:three_prime_UTR | 25.0% |
| ! | ACACAAAAAGAAAATATTCC+AGG | + | chr1_3:47635095-47635114 | None:intergenic | 25.0% |
| ! | CAATTTCTCTTGCAATTTAA+CGG | + | chr1_3:47635474-47635493 | None:intergenic | 25.0% |
| ! | AGAATCATTATGAAGTTCAA+AGG | - | chr1_3:47635813-47635832 | Msa0121620:intron | 25.0% |
| ! | TTATTAAACAGGAGTTGAAA+CGG | - | chr1_3:47635963-47635982 | Msa0121620:intron | 25.0% |
| !!! | TTCTTCTCTTCTTCTTTTTT+AGG | + | chr1_3:47636099-47636118 | None:intergenic | 25.0% |
| ! | TGAAAAGAAAGAGAAAGAAA+AGG | - | chr1_3:47636137-47636156 | Msa0121620:intron | 25.0% |
| ! | TGACCTTCATAATAATACAT+CGG | + | chr1_3:47636252-47636271 | None:intergenic | 25.0% |
| ! | CAACATTATATGGAGAATAA+TGG | - | chr1_3:47636342-47636361 | Msa0121620:intron | 25.0% |
| ! | TATATGAATATGAATCATGG+TGG | - | chr1_3:47636366-47636385 | Msa0121620:intron | 25.0% |
| TATATAACCAATGAAACGGT+GGG | + | chr1_3:47634880-47634899 | None:intergenic | 30.0% | |
| ATATATAACCAATGAAACGG+TGG | + | chr1_3:47634881-47634900 | None:intergenic | 30.0% | |
| ! | AGATTTTGTGTTTGAAGAGT+GGG | + | chr1_3:47634928-47634947 | None:intergenic | 30.0% |
| ! | AAGATTTTGTGTTTGAAGAG+TGG | + | chr1_3:47634929-47634948 | None:intergenic | 30.0% |
| CGTTAAATTGCAAGAGAAAT+TGG | - | chr1_3:47635472-47635491 | Msa0121620:CDS | 30.0% | |
| !!! | TCTTTAGGTTTTTTCTCTTC+AGG | + | chr1_3:47635641-47635660 | None:intergenic | 30.0% |
| TGAAGAGAAAAAACCTAAAG+AGG | - | chr1_3:47635640-47635659 | Msa0121620:CDS | 30.0% | |
| ! | TATTAATTTTCAGAGTACGG+TGG | - | chr1_3:47635743-47635762 | Msa0121620:intron | 30.0% |
| GGCTAATGATGTTATTAAAC+AGG | - | chr1_3:47635952-47635971 | Msa0121620:CDS | 30.0% | |
| AGATACTCTATCAAATCCTT+TGG | + | chr1_3:47636039-47636058 | None:intergenic | 30.0% | |
| !!! | TTCTCTTCTTCTTTTTTAGG+TGG | + | chr1_3:47636096-47636115 | None:intergenic | 30.0% |
| AGAAGAGAAGAAAGAAAAAG+AGG | - | chr1_3:47636107-47636126 | Msa0121620:intron | 30.0% | |
| GAAGAGAAGAAAGAAAAAGA+GGG | - | chr1_3:47636108-47636127 | Msa0121620:intron | 30.0% | |
| AAAGAAAGAGAAAGAAAAGG+CGG | - | chr1_3:47636140-47636159 | Msa0121620:intron | 30.0% | |
| ATCAATTTCATCATCAACCT+GGG | - | chr1_3:47636295-47636314 | Msa0121620:CDS | 30.0% | |
| GGGTATATGAATATGAATCA+TGG | - | chr1_3:47636363-47636382 | Msa0121620:intron | 30.0% | |
| TTATTAGGGTGCATGTAATA+CGG | + | chr1_3:47636420-47636439 | None:intergenic | 30.0% | |
| ! | TTCTTTTTCTCTTCCAAATC+TGG | + | chr1_3:47636731-47636750 | None:intergenic | 30.0% |
| ! | GATTTTGTGTTTGAAGAGTG+GGG | + | chr1_3:47634927-47634946 | None:intergenic | 35.0% |
| !! | TATTAGGATTGTGGTGTTGT+GGG | + | chr1_3:47634962-47634981 | None:intergenic | 35.0% |
| ! | ATATTAGGATTGTGGTGTTG+TGG | + | chr1_3:47634963-47634982 | None:intergenic | 35.0% |
| CTATTACCAATCACACACAT+GGG | - | chr1_3:47634993-47635012 | Msa0121620:three_prime_UTR | 35.0% | |
| AAGTCGAGTTTGTAAACAAC+AGG | + | chr1_3:47635244-47635263 | None:intergenic | 35.0% | |
| AAACTCGACTTACATTGTGA+AGG | - | chr1_3:47635253-47635272 | Msa0121620:CDS | 35.0% | |
| TGAAGCTAGATCTGCTTTAA+CGG | + | chr1_3:47635420-47635439 | None:intergenic | 35.0% | |
| TCAAACAAAGTGACAGTTAC+CGG | - | chr1_3:47635437-47635456 | Msa0121620:CDS | 35.0% | |
| TTTAACGGCGTCAAATTTAC+CGG | + | chr1_3:47635459-47635478 | None:intergenic | 35.0% | |
| AAAATCCGACGAGAAAAAAC+CGG | - | chr1_3:47635574-47635593 | Msa0121620:CDS | 35.0% | |
| !!! | TCTTCAGGTTTTTTCTCTTC+AGG | + | chr1_3:47635626-47635645 | None:intergenic | 35.0% |
| ! | AAGGATTTGGTAACAGTGAA+AGG | - | chr1_3:47636003-47636022 | Msa0121620:intron | 35.0% |
| GAAGAAAGAAGAGAAGAAAG+TGG | - | chr1_3:47636164-47636183 | Msa0121620:intron | 35.0% | |
| AAAGAAGAGAAGAAAGTGGA+CGG | - | chr1_3:47636168-47636187 | Msa0121620:intron | 35.0% | |
| GAAGGTGGAGGTTAATAAAA+TGG | - | chr1_3:47636203-47636222 | Msa0121620:intron | 35.0% | |
| TAATACATCGGAGCTTGTAT+CGG | + | chr1_3:47636240-47636259 | None:intergenic | 35.0% | |
| GCTCCGATGTATTATTATGA+AGG | - | chr1_3:47636246-47636265 | Msa0121620:CDS | 35.0% | |
| AAGTAGTAACTATGCTGGTA+TGG | - | chr1_3:47636272-47636291 | Msa0121620:CDS | 35.0% | |
| GATCAATTTCATCATCAACC+TGG | - | chr1_3:47636294-47636313 | Msa0121620:CDS | 35.0% | |
| ATGAATATGAATCATGGTGG+TGG | - | chr1_3:47636369-47636388 | Msa0121620:intron | 35.0% | |
| GAGTGTGTATACATTATGCA+CGG | - | chr1_3:47636508-47636527 | Msa0121620:CDS | 35.0% | |
| ! | CCATGTGTGTGATTGGTAAT+AGG | + | chr1_3:47634995-47635014 | None:intergenic | 40.0% |
| CCTATTACCAATCACACACA+TGG | - | chr1_3:47634992-47635011 | Msa0121620:three_prime_UTR | 40.0% | |
| TCCTTCATCAGCTTTCTTCT+CGG | + | chr1_3:47635185-47635204 | None:intergenic | 40.0% | |
| AGTTTGTAAACAACAGGAGC+AGG | + | chr1_3:47635238-47635257 | None:intergenic | 40.0% | |
| GGCTGAAAAAGCTAAGAAGA+AGG | - | chr1_3:47635493-47635512 | Msa0121620:CDS | 40.0% | |
| AAGATCAGATTGCACTGTGA+CGG | - | chr1_3:47635771-47635790 | Msa0121620:intron | 40.0% | |
| GGTAACAGTGAAAGGAACAA+TGG | - | chr1_3:47636011-47636030 | Msa0121620:intron | 40.0% | |
| GAAAGGAACAATGGAACCAA+AGG | - | chr1_3:47636020-47636039 | Msa0121620:intron | 40.0% | |
| GAGAAGAAAGAAAAAGAGGG+TGG | - | chr1_3:47636111-47636130 | Msa0121620:intron | 40.0% | |
| AAGAAAGAAAAAGAGGGTGG+AGG | - | chr1_3:47636114-47636133 | Msa0121620:intron | 40.0% | |
| GGTCAAAGTAGTAACTATGC+TGG | - | chr1_3:47636267-47636286 | Msa0121620:CDS | 40.0% | |
| TTTCATCATCAACCTGGGTA+TGG | - | chr1_3:47636300-47636319 | Msa0121620:CDS | 40.0% | |
| ATGTAATACGGTACTTGAGG+TGG | + | chr1_3:47636408-47636427 | None:intergenic | 40.0% | |
| TGCATGTAATACGGTACTTG+AGG | + | chr1_3:47636411-47636430 | None:intergenic | 40.0% | |
| !! | TCTGAGGAGGTGGATTATTA+GGG | + | chr1_3:47636434-47636453 | None:intergenic | 40.0% |
| !! | ATCTGAGGAGGTGGATTATT+AGG | + | chr1_3:47636435-47636454 | None:intergenic | 40.0% |
| TTCTCATCACTGAACATCTG+AGG | + | chr1_3:47636450-47636469 | None:intergenic | 40.0% | |
| CACATGAGAGAACAAGCATT+GGG | + | chr1_3:47636474-47636493 | None:intergenic | 40.0% | |
| TCACATGAGAGAACAAGCAT+TGG | + | chr1_3:47636475-47636494 | None:intergenic | 40.0% | |
| ! | AAATATTAGACTGGCTCAGC+TGG | - | chr1_3:47636691-47636710 | Msa0121620:intron | 40.0% |
| TTTCTCTTCCAAATCTGGAC+AGG | + | chr1_3:47636726-47636745 | None:intergenic | 40.0% | |
| !! | GTGAGGTAATGGGATTGGTT+AGG | + | chr1_3:47634858-47634877 | None:intergenic | 45.0% |
| ! | GAGTGGGGAGAGAAGTATAA+GGG | + | chr1_3:47634912-47634931 | None:intergenic | 45.0% |
| ! | AGAGTGGGGAGAGAAGTATA+AGG | + | chr1_3:47634913-47634932 | None:intergenic | 45.0% |
| ACCGAGAAGAAAGCTGATGA+AGG | - | chr1_3:47635181-47635200 | Msa0121620:three_prime_UTR | 45.0% | |
| !!! | TTTTTTCTCCGCCGGTTTCT+CGG | + | chr1_3:47635558-47635577 | None:intergenic | 45.0% |
| CCAAATCCTTGTCTCCATCT+AGG | + | chr1_3:47635993-47636012 | None:intergenic | 45.0% | |
| CCTAGATGGAGACAAGGATT+TGG | - | chr1_3:47635990-47636009 | Msa0121620:intron | 45.0% | |
| TTATAACCACCACCATACCC+AGG | + | chr1_3:47636315-47636334 | None:intergenic | 45.0% | |
| TCATCACTGAACATCTGAGG+AGG | + | chr1_3:47636447-47636466 | None:intergenic | 45.0% | |
| TGGAGAATCCTGTCCAGATT+TGG | - | chr1_3:47636715-47636734 | Msa0121620:exon | 45.0% | |
| !! | TAATTAATTAATTGTTAATT+TGG | - | chr1_3:47635928-47635947 | Msa0121620:CDS | 5.0% |
| GAAACGGTGGGTGAGGTAAT+GGG | + | chr1_3:47634868-47634887 | None:intergenic | 50.0% | |
| TGAAACGGTGGGTGAGGTAA+TGG | + | chr1_3:47634869-47634888 | None:intergenic | 50.0% | |
| TACCTCACCCACCGTTTCAT+TGG | - | chr1_3:47634870-47634889 | Msa0121620:three_prime_UTR | 50.0% | |
| AACCAATGAAACGGTGGGTG+AGG | + | chr1_3:47634875-47634894 | None:intergenic | 50.0% | |
| ! | GGGAGAGAAGTATAAGGGAG+AGG | + | chr1_3:47634907-47634926 | None:intergenic | 50.0% |
| ACCAATCACACACATGGGAG+AGG | - | chr1_3:47634998-47635017 | Msa0121620:three_prime_UTR | 50.0% | |
| ACCTCTCCCATGTGTGTGAT+TGG | + | chr1_3:47635002-47635021 | None:intergenic | 50.0% | |
| TAAACAACAGGAGCAGGAGC+AGG | + | chr1_3:47635232-47635251 | None:intergenic | 50.0% | |
| !!! | TCGTCGGATTTTTTCTCCGC+CGG | + | chr1_3:47635566-47635585 | None:intergenic | 50.0% |
| ATCCGACGAGAAAAAACCGG+AGG | - | chr1_3:47635577-47635596 | Msa0121620:CDS | 50.0% | |
| !!! | CTCCTCCGGTTTTTTCTCGT+CGG | + | chr1_3:47635582-47635601 | None:intergenic | 50.0% |
| TCCTCAGCTTTCTTCTCCTC+CGG | + | chr1_3:47635596-47635615 | None:intergenic | 50.0% | |
| GTTGAAACGGCGAACCTAGA+TGG | - | chr1_3:47635976-47635995 | Msa0121620:intron | 50.0% | |
| GAAGAGAAGAAAGTGGACGG+TGG | - | chr1_3:47636171-47636190 | Msa0121620:intron | 50.0% | |
| CATCATCAACCTGGGTATGG+TGG | - | chr1_3:47636303-47636322 | Msa0121620:CDS | 50.0% | |
| TCACTGAACATCTGAGGAGG+TGG | + | chr1_3:47636444-47636463 | None:intergenic | 50.0% | |
| !! | GGTGGGTGAGGTAATGGGAT+TGG | + | chr1_3:47634863-47634882 | None:intergenic | 55.0% |
| ! | CGAAGTGCTCGTCATTTCGC+TGG | - | chr1_3:47635295-47635314 | Msa0121620:CDS | 55.0% |
| CCACCGCCAAAAAAAGACGC+CGG | - | chr1_3:47635530-47635549 | Msa0121620:CDS | 55.0% | |
| !!! | GCTCCGGCGTCTTTTTTTGG+CGG | + | chr1_3:47635536-47635555 | None:intergenic | 55.0% |
| !!! | TCGGCTCCGGCGTCTTTTTT+TGG | + | chr1_3:47635539-47635558 | None:intergenic | 55.0% |
| ACCGGAGGAGAAGAAAGCTG+AGG | - | chr1_3:47635592-47635611 | Msa0121620:CDS | 55.0% | |
| GGCGAACCTAGATGGAGACA+AGG | - | chr1_3:47635984-47636003 | Msa0121620:intron | 55.0% | |
| GAAAGTGGACGGTGGAGATG+CGG | - | chr1_3:47636179-47636198 | Msa0121620:intron | 55.0% | |
| CATCAACCTGGGTATGGTGG+TGG | - | chr1_3:47636306-47636325 | Msa0121620:CDS | 55.0% | |
| GGTACTTGAGGTGGCTGCAT+AGG | + | chr1_3:47636399-47636418 | None:intergenic | 55.0% | |
| ! | ATTAGACTGGCTCAGCTGGC+TGG | - | chr1_3:47636695-47636714 | Msa0121620:intron | 55.0% |
| ACAGGAGCAGGAGCAGGAAC+AGG | + | chr1_3:47635226-47635245 | None:intergenic | 60.0% | |
| !!! | CCGGCGTCTTTTTTTGGCGG+TGG | + | chr1_3:47635533-47635552 | None:intergenic | 60.0% |
| AGACGCCGGAGCCGAGAAAC+CGG | - | chr1_3:47635544-47635563 | Msa0121620:CDS | 65.0% | |
| TGGAGATGCGGCGAAGGTGG+AGG | - | chr1_3:47636191-47636210 | Msa0121620:intron | 65.0% | |
| !! | CTCCGCCGGTTTCTCGGCTC+CGG | + | chr1_3:47635552-47635571 | None:intergenic | 70.0% |
| GGACGGTGGAGATGCGGCGA+AGG | - | chr1_3:47636185-47636204 | Msa0121620:intron | 70.0% | |
| CGGTGGAGATGCGGCGAAGG+TGG | - | chr1_3:47636188-47636207 | Msa0121620:intron | 70.0% | |
| CGCCGGAGCCGAGAAACCGG+CGG | - | chr1_3:47635547-47635566 | Msa0121620:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 47634855 | 47636879 | 47634855 | ID=Msa0121620;Name=Msa0121620 |
| chr1_3 | mRNA | 47634855 | 47636879 | 47634855 | ID=Msa0121620-mRNA-1;Parent=Msa0121620;Name=Msa0121620-mRNA-1;_AED=0.06;_eAED=0.06;_QI=156|0.75|0.8|1|1|1|5|385|287 |
| chr1_3 | exon | 47634855 | 47635760 | 47634855 | ID=Msa0121620-mRNA-1:exon:14357;Parent=Msa0121620-mRNA-1 |
| chr1_3 | exon | 47635900 | 47635978 | 47635900 | ID=Msa0121620-mRNA-1:exon:14356;Parent=Msa0121620-mRNA-1 |
| chr1_3 | exon | 47636220 | 47636326 | 47636220 | ID=Msa0121620-mRNA-1:exon:14355;Parent=Msa0121620-mRNA-1 |
| chr1_3 | exon | 47636418 | 47636565 | 47636418 | ID=Msa0121620-mRNA-1:exon:14354;Parent=Msa0121620-mRNA-1 |
| chr1_3 | exon | 47636715 | 47636879 | 47636715 | ID=Msa0121620-mRNA-1:exon:14353;Parent=Msa0121620-mRNA-1 |
| chr1_3 | five_prime_UTR | 47636724 | 47636879 | 47636724 | ID=Msa0121620-mRNA-1:five_prime_utr;Parent=Msa0121620-mRNA-1 |
| chr1_3 | CDS | 47636715 | 47636723 | 47636715 | ID=Msa0121620-mRNA-1:cds;Parent=Msa0121620-mRNA-1 |
| chr1_3 | CDS | 47636418 | 47636565 | 47636418 | ID=Msa0121620-mRNA-1:cds;Parent=Msa0121620-mRNA-1 |
| chr1_3 | CDS | 47636220 | 47636326 | 47636220 | ID=Msa0121620-mRNA-1:cds;Parent=Msa0121620-mRNA-1 |
| chr1_3 | CDS | 47635900 | 47635978 | 47635900 | ID=Msa0121620-mRNA-1:cds;Parent=Msa0121620-mRNA-1 |
| chr1_3 | CDS | 47635240 | 47635760 | 47635240 | ID=Msa0121620-mRNA-1:cds;Parent=Msa0121620-mRNA-1 |
| chr1_3 | three_prime_UTR | 47634855 | 47635239 | 47634855 | ID=Msa0121620-mRNA-1:three_prime_utr;Parent=Msa0121620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
