AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0217680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0217680 MtrunA17_Chr2g0319571 98.311 296 4 1 1 295 1 296 0.0 587
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0217680 AT4G27120.2 64.262 305 92 5 1 295 1 298 4.76e-97 288
Msa0217680 AT4G27120.1 64.262 305 92 5 1 295 1 298 4.76e-97 288
Msa0217680 AT4G27120.3 75.000 228 47 4 76 295 4 229 6.89e-86 257

Find 78 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTATATATTCAACAAAAT+TGG 0.202421 2_1:-64647680 None:intergenic
GGTTTGATTTACTAGCTAAA+TGG 0.210956 2_1:-64650314 None:intergenic
TTCTGCAGCAAGATCTTCTA+AGG 0.265042 2_1:-64647904 None:intergenic
GTTGTTCTTCTTCGGTTTGC+AGG 0.265401 2_1:-64644644 None:intergenic
AATAAACCTTGTTGCGTTGC+AGG 0.302830 2_1:-64645019 None:intergenic
CCGTTTCTGTTGTTCTTCTT+CGG 0.323884 2_1:-64644652 None:intergenic
TCCTCAGCATAATGAGTCTT+TGG 0.336486 2_1:-64650354 None:intergenic
TACTTCCATCTGTCTGAAAC+TGG 0.338899 2_1:-64650690 None:intergenic
GGCCAAAGCATCAAAGAAAA+AGG 0.344496 2_1:+64645863 Msa0217680:CDS
CTTTGACTGCCGAGCTTCTT+CGG 0.373097 2_1:-64647372 None:intergenic
GGATGAAGAGCGTGAGGCGC+AGG 0.375726 2_1:+64647427 Msa0217680:CDS
TTTCGGGTGTCATGGATGAT+AGG 0.388749 2_1:+64650211 Msa0217680:CDS
GTTTGATTTACTAGCTAAAT+GGG 0.400098 2_1:-64650313 None:intergenic
TATCAATCGCATCACATCTC+TGG 0.405277 2_1:+64649739 Msa0217680:CDS
TTGGCTCTAAATCAATGAAC+TGG 0.430161 2_1:-64650335 None:intergenic
AGAGGAAGCCAAAGCTCAAA+AGG 0.449793 2_1:+64647546 Msa0217680:CDS
CGTCGGAGAACGGTTGCGTC+TGG 0.451265 2_1:+64644974 Msa0217680:CDS
CACTAATTCCACTCTACCTA+TGG 0.452049 2_1:+64644758 Msa0217680:CDS
AATCTTGTCTTGCTATGAAA+AGG 0.456615 2_1:-64650763 None:intergenic
GTAGCGGTGGCACGTGCAGC+AGG 0.458752 2_1:-64644941 None:intergenic
TTCCTCCGAAGAATCTCATC+AGG 0.463827 2_1:+64644816 Msa0217680:CDS
AGAAATAGAATGCACTGATC+TGG 0.464960 2_1:+64650459 Msa0217680:three_prime_UTR
AGGAACTCAAAAGGCAAGAG+AGG 0.466995 2_1:+64645883 Msa0217680:CDS
GCAAACCTGATGAGATTCTT+CGG 0.472566 2_1:-64644821 None:intergenic
TTCAGAAATGCGGAGGTTGA+AGG 0.477745 2_1:+64647406 Msa0217680:CDS
CCGCTACTCGCCGCATGCGT+CGG 0.483491 2_1:+64644957 Msa0217680:CDS
TCGCCGCATGCGTCGGAGAA+CGG 0.485918 2_1:+64644964 Msa0217680:CDS
CGTGCAGCAGGTTCTCTGAC+TGG 0.487359 2_1:-64644929 None:intergenic
AGGTCGGCTTTCGGGTGTCA+TGG 0.491989 2_1:+64650203 Msa0217680:intron
AGCTCAAAAGGCTAGGGAAG+AGG 0.494792 2_1:+64647558 Msa0217680:CDS
TGAAACCAGTTTCAGACAGA+TGG 0.501893 2_1:+64650685 Msa0217680:three_prime_UTR
AAATTAATTGAGAAATTACA+TGG 0.504193 2_1:-64650663 None:intergenic
ACCTCCGCATTTCTGAATAA+CGG 0.508197 2_1:-64647400 None:intergenic
TTCGGGTGTCATGGATGATA+GGG 0.512596 2_1:+64650212 Msa0217680:CDS
CATCACATCTCTGGAAAGCA+TGG 0.517076 2_1:+64649748 Msa0217680:CDS
AATCGCGATGGCGTTTCCAT+AGG 0.517904 2_1:-64644774 None:intergenic
CCGAAGAAGAACAACAGAAA+CGG 0.520260 2_1:+64644652 Msa0217680:five_prime_UTR
AAGCCAAAGCTCAAAAGGCT+AGG 0.524157 2_1:+64647551 Msa0217680:CDS
AAAATTCATTTACATCTCAC+AGG 0.525131 2_1:+64650236 Msa0217680:CDS
ATGAAATTGGAGTAATGCTA+AGG 0.533723 2_1:-64650515 None:intergenic
AGGTACACTTGAAGAGGAGC+AGG 0.538791 2_1:+64647636 Msa0217680:CDS
TGAGGCGCAGGAGCGTAAGT+TGG 0.547553 2_1:+64647439 Msa0217680:CDS
TTTGAAAGGCCGAAGAAGCT+CGG 0.559088 2_1:+64647363 Msa0217680:intron
AGCCAAAGCTCAAAAGGCTA+GGG 0.560451 2_1:+64647552 Msa0217680:CDS
CCGACGCATGCGGCGAGTAG+CGG 0.568591 2_1:-64644957 None:intergenic
TTTCTTTACATCATCAACGA+TGG 0.575763 2_1:+64644693 Msa0217680:exon
GCTCCGCCTGCAACGCAACA+AGG 0.578148 2_1:+64645013 Msa0217680:CDS
TTCGGAGGAAGATGAAGATG+AGG 0.579662 2_1:-64644803 None:intergenic
TTATATTAAGCGACAAGGGA+GGG 0.582545 2_1:+64650281 Msa0217680:CDS
ACGCATGCGGCGAGTAGCGG+TGG 0.584210 2_1:-64644954 None:intergenic
AGAGAGGGAAGCTCGACGGC+AGG 0.585418 2_1:+64645899 Msa0217680:CDS
GGCAAGAGAGGGAAGCTCGA+CGG 0.594227 2_1:+64645895 Msa0217680:CDS
TGATGAAGGTACACTTGAAG+AGG 0.595506 2_1:+64647630 Msa0217680:CDS
GGAACTCAAAAGGCAAGAGA+GGG 0.598128 2_1:+64645884 Msa0217680:CDS
TGCTGAGGACATTAGTAACA+TGG 0.604243 2_1:+64650368 Msa0217680:CDS
CAACCGTTCTCCGACGCATG+CGG 0.605145 2_1:-64644967 None:intergenic
TGGCGTTTCCATAGGTAGAG+TGG 0.606502 2_1:-64644766 None:intergenic
ACCGTTATTCAGAAATGCGG+AGG 0.609223 2_1:+64647399 Msa0217680:CDS
AGAATTTAAATTGCGCACAC+AGG 0.611949 2_1:+64647923 Msa0217680:CDS
TTAGAGTTTGACAAGTGGAA+AGG 0.613934 2_1:+64647592 Msa0217680:CDS
ATTATATTAAGCGACAAGGG+AGG 0.616619 2_1:+64650280 Msa0217680:CDS
GAAAGTGACAATGAAGCTGC+TGG 0.617304 2_1:+64645828 Msa0217680:CDS
ATCACATCTCTGGAAAGCAT+GGG 0.618886 2_1:+64649749 Msa0217680:CDS
TCTGCAGCAAGATCTTCTAA+GGG 0.619289 2_1:-64647903 None:intergenic
AAACCTTGTTGCGTTGCAGG+CGG 0.623759 2_1:-64645016 None:intergenic
CTGCGTTAGAGTTTGACAAG+TGG 0.625306 2_1:+64647587 Msa0217680:CDS
GAGATAACTGTCAACTGACA+TGG 0.625384 2_1:+64650393 Msa0217680:exon
CTGATTATATTAAGCGACAA+GGG 0.630907 2_1:+64650277 Msa0217680:CDS
CTGCAATGAGAAGTGTAGAG+AGG 0.643472 2_1:-64644735 None:intergenic
TCGGGTGTCATGGATGATAG+GGG 0.647827 2_1:+64650213 Msa0217680:CDS
GTTGAAGGATGAAGAGCGTG+AGG 0.648299 2_1:+64647421 Msa0217680:CDS
ATGAGGATTGAGAATCGCGA+TGG 0.648606 2_1:-64644786 None:intergenic
GCTGATTATATTAAGCGACA+AGG 0.652115 2_1:+64650276 Msa0217680:CDS
GCCAAAGACTCATTATGCTG+AGG 0.657399 2_1:+64650353 Msa0217680:CDS
AGCTGCTGGTGATGAGCATG+AGG 0.671214 2_1:+64645842 Msa0217680:CDS
AAGACCGTTATTCAGAAATG+CGG 0.686615 2_1:+64647396 Msa0217680:CDS
AACCTGATGAGATTCTTCGG+AGG 0.714808 2_1:-64644818 None:intergenic
TGAGGACATTAGTAACATGG+AGG 0.752094 2_1:+64650371 Msa0217680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAATAATATTTTAGATAAA+GGG + chr2_1:64646419-64646438 Msa0217680:intron 10.0%
!!! AAATAATATTTTAGATAAAG+GGG + chr2_1:64646420-64646439 Msa0217680:intron 10.0%
!! ATAAATATTCTATAAACTTA+AGG - chr2_1:64649203-64649222 None:intergenic 10.0%
!! TTATAGAATATTTATATACA+AGG + chr2_1:64649208-64649227 Msa0217680:intron 10.0%
!!! AGTAATATATTTTTCATTTT+CGG + chr2_1:64649678-64649697 Msa0217680:intron 10.0%
!!! GATTTAATTTTATTTGTGTT+TGG + chr2_1:64645051-64645070 Msa0217680:intron 15.0%
!! TAATTGAATTAATTCTTGTT+TGG + chr2_1:64645115-64645134 Msa0217680:intron 15.0%
!!! AGACTTTTTTGAAAAATAAA+AGG + chr2_1:64646397-64646416 Msa0217680:intron 15.0%
!!! GGAAATAATATTTTAGATAA+AGG + chr2_1:64646418-64646437 Msa0217680:intron 15.0%
!!! AATAATATTTTAGATAAAGG+GGG + chr2_1:64646421-64646440 Msa0217680:intron 15.0%
!! CTTTATATATTCAACAAAAT+TGG - chr2_1:64647683-64647702 None:intergenic 15.0%
!!! CAATTTTGTTGAATATATAA+AGG + chr2_1:64647681-64647700 Msa0217680:CDS 15.0%
!! AATAGAATATAAAAAAGAAG+AGG - chr2_1:64648003-64648022 None:intergenic 15.0%
!! ATATAAATCATTAAACATAC+TGG - chr2_1:64648112-64648131 None:intergenic 15.0%
!!! TTTTATCTTACATTTTGTAA+TGG + chr2_1:64648546-64648565 Msa0217680:intron 15.0%
!!! GTAATATATTTTTCATTTTC+GGG + chr2_1:64649679-64649698 Msa0217680:intron 15.0%
!!! TAATATATTTTTCATTTTCG+GGG + chr2_1:64649680-64649699 Msa0217680:intron 15.0%
!!! TATATATTTCTTTTGATAGA+TGG - chr2_1:64649809-64649828 None:intergenic 15.0%
!! AAGAAATATTTGACATAATT+GGG + chr2_1:64649962-64649981 Msa0217680:intron 15.0%
!!! AATGATTTATTTATTTTGTC+AGG + chr2_1:64650183-64650202 Msa0217680:intron 15.0%
!!! ATACAGTAAATATATTTTTG+CGG - chr2_1:64650544-64650563 None:intergenic 15.0%
!! AAATTAATTGAGAAATTACA+TGG - chr2_1:64650666-64650685 None:intergenic 15.0%
!!! GTTGTTTTTATAAGTTATCA+TGG + chr2_1:64645247-64645266 Msa0217680:intron 20.0%
!! ATAAAATTCCATTAATCAGA+TGG - chr2_1:64645417-64645436 None:intergenic 20.0%
!! TTAAATTTGACTAACCAAAA+TGG + chr2_1:64646065-64646084 Msa0217680:intron 20.0%
!!! ATAATATTTTAGATAAAGGG+GGG + chr2_1:64646422-64646441 Msa0217680:intron 20.0%
!! AGATAATACAAAGGATAATT+TGG + chr2_1:64646474-64646493 Msa0217680:intron 20.0%
!!! AATAGTTTAATTTTGTTCTC+AGG + chr2_1:64646831-64646850 Msa0217680:intron 20.0%
!! TCATCACTCATTATTAAAAA+TGG + chr2_1:64646854-64646873 Msa0217680:intron 20.0%
!! CATCACTCATTATTAAAAAT+GGG + chr2_1:64646855-64646874 Msa0217680:intron 20.0%
!! ATCAAATAACAAGTAAGAAA+AGG - chr2_1:64647015-64647034 None:intergenic 20.0%
!! AAAAGTTTATTTATGTCCAT+AGG + chr2_1:64647765-64647784 Msa0217680:intron 20.0%
!! AAAGTTTATTTATGTCCATA+GGG + chr2_1:64647766-64647785 Msa0217680:intron 20.0%
!! CAAACAATATAAAAAAGAAG+AGG - chr2_1:64648036-64648055 None:intergenic 20.0%
!! AAAAGAAGTTAGATATTAGT+GGG - chr2_1:64648415-64648434 None:intergenic 20.0%
!!! TTTTCCCAAACATTATTAAT+TGG + chr2_1:64648431-64648450 Msa0217680:intron 20.0%
!! ACTTCCAATTAATAATGTTT+GGG - chr2_1:64648438-64648457 None:intergenic 20.0%
!! AACTTCCAATTAATAATGTT+TGG - chr2_1:64648439-64648458 None:intergenic 20.0%
!! ATAATCAATTGTTTAATTCG+TGG + chr2_1:64648674-64648693 Msa0217680:intron 20.0%
!! TAATCAATTGTTTAATTCGT+GGG + chr2_1:64648675-64648694 Msa0217680:intron 20.0%
!! AGAAACAATATCTTAAAGTT+TGG + chr2_1:64649236-64649255 Msa0217680:intron 20.0%
!! GAAACAATATCTTAAAGTTT+GGG + chr2_1:64649237-64649256 Msa0217680:intron 20.0%
!!! TCGACTACTTTATAATTTTA+TGG + chr2_1:64649321-64649340 Msa0217680:intron 20.0%
!! TTACTTAGAAACATTAGAAA+AGG - chr2_1:64649593-64649612 None:intergenic 20.0%
!!! TTTCTAATGTTTCTAAGTAA+TGG + chr2_1:64649593-64649612 Msa0217680:intron 20.0%
!! TAGATGGTAATTTAAAAGAA+AGG - chr2_1:64649793-64649812 None:intergenic 20.0%
!! TATGATGAAAAATAAACCAA+GGG - chr2_1:64649838-64649857 None:intergenic 20.0%
!! TGATTGTATATGAATTCAAA+AGG - chr2_1:64649889-64649908 None:intergenic 20.0%
!! GAAGAAATATTTGACATAAT+TGG + chr2_1:64649961-64649980 Msa0217680:intron 20.0%
!!! ATTTATTTATTTTGTCAGGT+CGG + chr2_1:64650187-64650206 Msa0217680:intron 20.0%
!!! TACAGTAAATATATTTTTGC+GGG - chr2_1:64650543-64650562 None:intergenic 20.0%
!!! AGAAAGTTATTCCATATTTT+TGG + chr2_1:64650601-64650620 Msa0217680:three_prime_UTR 20.0%
! GTTAAAATGTGGTGAAATTA+GGG - chr2_1:64644863-64644882 None:intergenic 25.0%
! TGTTAAAATGTGGTGAAATT+AGG - chr2_1:64644864-64644883 None:intergenic 25.0%
!!! CGAGTTTTATTGTTAAAATG+TGG - chr2_1:64644874-64644893 None:intergenic 25.0%
! TTAATTGTGAATGAATCATC+AGG + chr2_1:64644904-64644923 Msa0217680:intron 25.0%
! ATAGTGAAATGGAAAAGAAA+AGG - chr2_1:64645604-64645623 None:intergenic 25.0%
! ACTTGAACAAAATAGTGAAA+TGG - chr2_1:64645615-64645634 None:intergenic 25.0%
!! ACTATTTTGTTCAAGTGTTT+AGG + chr2_1:64645619-64645638 Msa0217680:intron 25.0%
!! CTATTTTGTTCAAGTGTTTA+GGG + chr2_1:64645620-64645639 Msa0217680:intron 25.0%
!! TTAAACTAGTACTGTTTTGT+GGG + chr2_1:64645722-64645741 Msa0217680:intron 25.0%
! AAGATGTTATGTGTATATGA+AGG + chr2_1:64646105-64646124 Msa0217680:intron 25.0%
! GTGTATATGAAGGTTTAATA+AGG + chr2_1:64646115-64646134 Msa0217680:intron 25.0%
!!! TAATATTTTAGATAAAGGGG+GGG + chr2_1:64646423-64646442 Msa0217680:intron 25.0%
! AAGGTTAATTGGTTAAAAGA+AGG - chr2_1:64646563-64646582 None:intergenic 25.0%
!!! CAGATTTTGATTTATGAGAT+GGG - chr2_1:64646728-64646747 None:intergenic 25.0%
!!! ACAGATTTTGATTTATGAGA+TGG - chr2_1:64646729-64646748 None:intergenic 25.0%
! ATAACAGAACAATAAACAAG+TGG + chr2_1:64646776-64646795 Msa0217680:intron 25.0%
! TAACAGAACAATAAACAAGT+GGG + chr2_1:64646777-64646796 Msa0217680:intron 25.0%
! TAAACAACACTATATTGTTG+CGG + chr2_1:64646887-64646906 Msa0217680:intron 25.0%
! TATTGCATAAAATAGAGTCA+TGG - chr2_1:64646913-64646932 None:intergenic 25.0%
!!! CTTACTTGTTATTTGATTTC+TGG + chr2_1:64647018-64647037 Msa0217680:intron 25.0%
! ACTAACTAATCATTTAACCA+GGG - chr2_1:64647240-64647259 None:intergenic 25.0%
! AACTAACTAATCATTTAACC+AGG - chr2_1:64647241-64647260 None:intergenic 25.0%
!! TTTTGGTACTTCTTTTTGAA+AGG + chr2_1:64647349-64647368 Msa0217680:intron 25.0%
!! AAACTTTTGACAACTTATCA+AGG - chr2_1:64647753-64647772 None:intergenic 25.0%
! CTACTTACATATTTAGTTGT+AGG + chr2_1:64648162-64648181 Msa0217680:intron 25.0%
! AAAACAAGTGAAAAGACAAT+GGG + chr2_1:64648206-64648225 Msa0217680:intron 25.0%
!! TGTTTGTTAATATAAACCGA+AGG - chr2_1:64648318-64648337 None:intergenic 25.0%
! AAACATGACTAGTATTATAC+AGG + chr2_1:64648333-64648352 Msa0217680:intron 25.0%
! AACATGACTAGTATTATACA+GGG + chr2_1:64648334-64648353 Msa0217680:intron 25.0%
! GAAAAGAAGTTAGATATTAG+TGG - chr2_1:64648416-64648435 None:intergenic 25.0%
! TAAAAATATTCAATGTCCTC+AGG - chr2_1:64648497-64648516 None:intergenic 25.0%
! TATCATCTATGTTGAACATT+TGG - chr2_1:64648585-64648604 None:intergenic 25.0%
!!! CTCTCGATTTTTAAAACATT+GGG - chr2_1:64648749-64648768 None:intergenic 25.0%
!!! ACTCTCGATTTTTAAAACAT+TGG - chr2_1:64648750-64648769 None:intergenic 25.0%
! AAGAAACAATCTCTTAAGTT+TGG + chr2_1:64649174-64649193 Msa0217680:intron 25.0%
! AGAAACAATCTCTTAAGTTT+GGG + chr2_1:64649175-64649194 Msa0217680:intron 25.0%
! CTATGATGAAAAATAAACCA+AGG - chr2_1:64649839-64649858 None:intergenic 25.0%
!!! TAAAACCTAGCTATTTTTGT+AGG - chr2_1:64650076-64650095 None:intergenic 25.0%
! AAAATTCATTTACATCTCAC+AGG + chr2_1:64650236-64650255 Msa0217680:CDS 25.0%
!! GTTTGATTTACTAGCTAAAT+GGG - chr2_1:64650316-64650335 None:intergenic 25.0%
!!! AACAATTTTAGCACTTTTGA+AGG + chr2_1:64650630-64650649 Msa0217680:three_prime_UTR 25.0%
TTTCTTTACATCATCAACGA+TGG + chr2_1:64644693-64644712 Msa0217680:exon 30.0%
!!! TGAAATTAGGGTTTTGGATT+GGG - chr2_1:64644851-64644870 None:intergenic 30.0%
!! TGATGGTGTTTTATGATTGA+TGG + chr2_1:64645081-64645100 Msa0217680:intron 30.0%
ATTCCATAAGCTCTTTCAAA+CGG + chr2_1:64645338-64645357 Msa0217680:intron 30.0%
AAATTCCATTAATCAGATGG+TGG - chr2_1:64645414-64645433 None:intergenic 30.0%
! TGTGTAGTTTTCTTCTTGAA+AGG + chr2_1:64645525-64645544 Msa0217680:intron 30.0%
! GTGTAGTTTTCTTCTTGAAA+GGG + chr2_1:64645526-64645545 Msa0217680:intron 30.0%
AAAATTGAACTGCTGTAGTT+TGG + chr2_1:64645561-64645580 Msa0217680:intron 30.0%
AAATTGAACTGCTGTAGTTT+GGG + chr2_1:64645562-64645581 Msa0217680:intron 30.0%
! AACTACTTGCCATTGTTATT+TGG + chr2_1:64645669-64645688 Msa0217680:intron 30.0%
! GTTAAACTAGTACTGTTTTG+TGG + chr2_1:64645721-64645740 Msa0217680:intron 30.0%
! TTTTGTGGGAATAATGTTCA+TGG + chr2_1:64645736-64645755 Msa0217680:intron 30.0%
! GTATACTTTTAAACAGAGTC+TGG + chr2_1:64645801-64645820 Msa0217680:intron 30.0%
! TTCCTTTTTCTTTGATGCTT+TGG - chr2_1:64645868-64645887 None:intergenic 30.0%
CAAAGAAAAAGGAACTCAAA+AGG + chr2_1:64645874-64645893 Msa0217680:CDS 30.0%
CACTAAGATATTCATTTGTC+TGG + chr2_1:64645991-64646010 Msa0217680:intron 30.0%
CAGACATGATATTCAGATAT+TGG + chr2_1:64646224-64646243 Msa0217680:intron 30.0%
! TAATTGTCCGATACAGTTTT+GGG - chr2_1:64646277-64646296 None:intergenic 30.0%
! TTAATTGTCCGATACAGTTT+TGG - chr2_1:64646278-64646297 None:intergenic 30.0%
TGTTAGCAGAGAAATTCTAT+AGG - chr2_1:64646301-64646320 None:intergenic 30.0%
TAGAGATAGAGAAGAGAAAA+GGG - chr2_1:64646532-64646551 None:intergenic 30.0%
TTAGAGATAGAGAAGAGAAA+AGG - chr2_1:64646533-64646552 None:intergenic 30.0%
TTCATTCTAGTGAAGATCTT+TGG - chr2_1:64646705-64646724 None:intergenic 30.0%
TAAACTATTGATGTCCTCAT+AGG - chr2_1:64646820-64646839 None:intergenic 30.0%
TCTCGGATTACTAAACAATA+GGG - chr2_1:64646936-64646955 None:intergenic 30.0%
AAGAAAAGGCAACAAATTGA+TGG - chr2_1:64647001-64647020 None:intergenic 30.0%
! CTAAGTGGTTGATTAGATTT+TGG + chr2_1:64647332-64647351 Msa0217680:intron 30.0%
CTTTCTTATGGTCTATTGAT+CGG + chr2_1:64647501-64647520 Msa0217680:intron 30.0%
!!! GAATTTTCAGTTGATGATGA+AGG + chr2_1:64647616-64647635 Msa0217680:CDS 30.0%
CAACTTATCAAGGCAAAATA+AGG - chr2_1:64647743-64647762 None:intergenic 30.0%
AACCTAATGGAAATTAGCTA+AGG + chr2_1:64647795-64647814 Msa0217680:intron 30.0%
ACCTAATGGAAATTAGCTAA+GGG + chr2_1:64647796-64647815 Msa0217680:intron 30.0%
! AGATTGGTCAATTCAGAAAA+AGG - chr2_1:64647967-64647986 None:intergenic 30.0%
AAAAAAGAAGAGGTGATAGA+GGG - chr2_1:64647993-64648012 None:intergenic 30.0%
TAAAAAAGAAGAGGTGATAG+AGG - chr2_1:64647994-64648013 None:intergenic 30.0%
AAAAAAGAAGAGGTGATAGA+GGG - chr2_1:64647993-64648012 None:intergenic 30.0%
TAAAAAAGAAGAGGTGATAG+AGG - chr2_1:64647994-64648013 None:intergenic 30.0%
GAAAACAAGTGAAAAGACAA+TGG + chr2_1:64648205-64648224 Msa0217680:intron 30.0%
AAAAGACAATGGGAAAACAA+AGG + chr2_1:64648216-64648235 Msa0217680:intron 30.0%
AAAGACAATGGGAAAACAAA+GGG + chr2_1:64648217-64648236 Msa0217680:intron 30.0%
ATTCCACTATTTACAGAGAT+TGG + chr2_1:64648262-64648281 Msa0217680:intron 30.0%
TAACCAATCTCTGTAAATAG+TGG - chr2_1:64648268-64648287 None:intergenic 30.0%
!! TACATTTTGTAATGGAAGCT+AGG + chr2_1:64648554-64648573 Msa0217680:intron 30.0%
!! ACATTTTGTAATGGAAGCTA+GGG + chr2_1:64648555-64648574 Msa0217680:intron 30.0%
!! TCTTGTAGACAAGTTTTATC+GGG + chr2_1:64648616-64648635 Msa0217680:intron 30.0%
ATCATATCACAGATTCTGAT+AGG + chr2_1:64648812-64648831 Msa0217680:intron 30.0%
TCATATCACAGATTCTGATA+GGG + chr2_1:64648813-64648832 Msa0217680:intron 30.0%
! AGTTGATATTCATAGAGATG+AGG + chr2_1:64648865-64648884 Msa0217680:intron 30.0%
GCATATTAGCAAATATACCT+AGG - chr2_1:64649089-64649108 None:intergenic 30.0%
ACATGCACAAAAATCTCTTA+AGG + chr2_1:64649147-64649166 Msa0217680:intron 30.0%
! TTAAAGTTTGGGATTACGTA+AGG + chr2_1:64649248-64649267 Msa0217680:intron 30.0%
AACCTGAACCATATTTCAAT+AGG + chr2_1:64649290-64649309 Msa0217680:intron 30.0%
ATCCTATTGAAATATGGTTC+AGG - chr2_1:64649295-64649314 None:intergenic 30.0%
GACATCATCCTATTGAAATA+TGG - chr2_1:64649301-64649320 None:intergenic 30.0%
TGGTTTATGATAGAACGTTA+TGG + chr2_1:64649487-64649506 Msa0217680:intron 30.0%
TAAAAGAAAGGATACACGAA+AGG - chr2_1:64649781-64649800 None:intergenic 30.0%
GAAATATATACACTTTCCCT+TGG + chr2_1:64649819-64649838 Msa0217680:intron 30.0%
ATGAATTCAAAAGGAGTAGA+TGG - chr2_1:64649880-64649899 None:intergenic 30.0%
AGTTTCCTACAAAAATAGCT+AGG + chr2_1:64650068-64650087 Msa0217680:intron 30.0%
!! GGTTTTATAGGTGTATCAAA+TGG + chr2_1:64650118-64650137 Msa0217680:intron 30.0%
!!! ATGGAAGTTTTTTCTCACTT+TGG + chr2_1:64650137-64650156 Msa0217680:intron 30.0%
!!! TGGAAGTTTTTTCTCACTTT+GGG + chr2_1:64650138-64650157 Msa0217680:intron 30.0%
CTGATTATATTAAGCGACAA+GGG + chr2_1:64650277-64650296 Msa0217680:CDS 30.0%
! GGTTTGATTTACTAGCTAAA+TGG - chr2_1:64650317-64650336 None:intergenic 30.0%
!!! GATCTGGTTTTATTAGGATA+TGG + chr2_1:64650475-64650494 Msa0217680:three_prime_UTR 30.0%
ATGAAATTGGAGTAATGCTA+AGG - chr2_1:64650518-64650537 None:intergenic 30.0%
! ATTTTTGCGGGAAATGAAAT+TGG - chr2_1:64650531-64650550 None:intergenic 30.0%
TTGTTGTGAAGCCAAAAATA+TGG - chr2_1:64650615-64650634 None:intergenic 30.0%
! AATCTTGTCTTGCTATGAAA+AGG - chr2_1:64650766-64650785 None:intergenic 30.0%
!!! GTGAAATTAGGGTTTTGGAT+TGG - chr2_1:64644852-64644871 None:intergenic 35.0%
! ATGTGGTGAAATTAGGGTTT+TGG - chr2_1:64644857-64644876 None:intergenic 35.0%
TTGTGTTTGGTATTGCATGA+TGG + chr2_1:64645064-64645083 Msa0217680:intron 35.0%
TTTCTTCTTGAAAGGGTTGA+CGG + chr2_1:64645533-64645552 Msa0217680:intron 35.0%
AATTGAACTGCTGTAGTTTG+GGG + chr2_1:64645563-64645582 Msa0217680:intron 35.0%
! TTTTGTTCAAGTGTTTAGGG+TGG + chr2_1:64645623-64645642 Msa0217680:intron 35.0%
! TTAGGGTGGATTTCATAATG+TGG + chr2_1:64645637-64645656 Msa0217680:intron 35.0%
AACAGAGAGCCAAATAACAA+TGG - chr2_1:64645681-64645700 None:intergenic 35.0%
!!! GCTCTCTGTTTTTTGTTATG+CGG + chr2_1:64645691-64645710 Msa0217680:intron 35.0%
ATCATTATGCTCTTAGACAC+AGG - chr2_1:64646045-64646064 None:intergenic 35.0%
! TTTCGAGAAACTCTCCATTT+TGG - chr2_1:64646082-64646101 None:intergenic 35.0%
CACATGATAGGATTACTTTG+AGG + chr2_1:64646192-64646211 Msa0217680:intron 35.0%
ACATCATCCCAAAACTGTAT+CGG + chr2_1:64646267-64646286 Msa0217680:intron 35.0%
AACAACCAGTTAAAACCTGA+AGG + chr2_1:64646317-64646336 Msa0217680:intron 35.0%
TGGTCATGACATGGTAAATA+CGG + chr2_1:64646343-64646362 Msa0217680:intron 35.0%
ATGACACTCTCAAGGTTAAT+TGG - chr2_1:64646574-64646593 None:intergenic 35.0%
! TTTTGTACACAACAGAGCAA+AGG + chr2_1:64646748-64646767 Msa0217680:intron 35.0%
GTCTCGGATTACTAAACAAT+AGG - chr2_1:64646937-64646956 None:intergenic 35.0%
! TCTTAAACTAGTGTTTTCCC+TGG + chr2_1:64647220-64647239 Msa0217680:intron 35.0%
! GTTGTTGATTGAAGTCTAAG+TGG + chr2_1:64647317-64647336 Msa0217680:intron 35.0%
AAGACCGTTATTCAGAAATG+CGG + chr2_1:64647396-64647415 Msa0217680:CDS 35.0%
!! TCTCAGGATTAGCTTTCTTA+TGG + chr2_1:64647489-64647508 Msa0217680:intron 35.0%
TTAGAGTTTGACAAGTGGAA+AGG + chr2_1:64647592-64647611 Msa0217680:CDS 35.0%
ACCCTTAGCTAATTTCCATT+AGG - chr2_1:64647800-64647819 None:intergenic 35.0%
GGTTATAATTGTAACCGTGT+GGG + chr2_1:64647817-64647836 Msa0217680:intron 35.0%
GTTATAATTGTAACCGTGTG+GGG + chr2_1:64647818-64647837 Msa0217680:intron 35.0%
TTATAATTGTAACCGTGTGG+GGG + chr2_1:64647819-64647838 Msa0217680:intron 35.0%
AGAATTTAAATTGCGCACAC+AGG + chr2_1:64647923-64647942 Msa0217680:CDS 35.0%
! TGTTTGTTGCTGTTAGTTTG+TGG + chr2_1:64648050-64648069 Msa0217680:intron 35.0%
!! GTTTGTTGCTGTTAGTTTGT+GGG + chr2_1:64648051-64648070 Msa0217680:intron 35.0%
!!! GTAGGAATTTTTAGCAGTGT+TGG + chr2_1:64648180-64648199 Msa0217680:intron 35.0%
AACAAAGGGTGATGTAATAG+AGG + chr2_1:64648231-64648250 Msa0217680:intron 35.0%
TCTTATACTCCATAAGCCAT+CGG + chr2_1:64648359-64648378 Msa0217680:intron 35.0%
GAAGTTAGATATTAGTGGGA+TGG - chr2_1:64648411-64648430 None:intergenic 35.0%
ATATTCAATGTCCTCAGGAT+AGG - chr2_1:64648492-64648511 None:intergenic 35.0%
!! CTTGTAGACAAGTTTTATCG+GGG + chr2_1:64648617-64648636 Msa0217680:intron 35.0%
TCTTGTGATTCTCAATTGCA+TGG + chr2_1:64648922-64648941 Msa0217680:intron 35.0%
GATTCAGTTAAACTAAGCCT+AGG + chr2_1:64649069-64649088 Msa0217680:intron 35.0%
! TTTTATGGCGTTAACATGAC+TGG + chr2_1:64649336-64649355 Msa0217680:intron 35.0%
!! GTTTCGACTGGGTTTTATAT+TGG + chr2_1:64649377-64649396 Msa0217680:intron 35.0%
ATGCATAATGAGGCTATCAT+AGG + chr2_1:64649451-64649470 Msa0217680:intron 35.0%
ATAATGAGGCTATCATAGGA+AGG + chr2_1:64649455-64649474 Msa0217680:intron 35.0%
! TCATAGGAAGGATTAGCATA+TGG + chr2_1:64649467-64649486 Msa0217680:intron 35.0%
TGTTCTTGAAACTGACTGAT+CGG + chr2_1:64649565-64649584 Msa0217680:intron 35.0%
! AAGTAATGGAGCCCTATTTA+CGG + chr2_1:64649607-64649626 Msa0217680:intron 35.0%
ATGACACTGTAAACTTATGC+AGG + chr2_1:64649712-64649731 Msa0217680:intron 35.0%
TCAAAAGGAGTAGATGGTAA+TGG - chr2_1:64649874-64649893 None:intergenic 35.0%
ACATGGCATCTAATCTAACA+TGG - chr2_1:64649917-64649936 None:intergenic 35.0%
TACCCTATTGTTGCAAGTTA+TGG + chr2_1:64650014-64650033 Msa0217680:intron 35.0%
ACCCTATTGTTGCAAGTTAT+GGG + chr2_1:64650015-64650034 Msa0217680:intron 35.0%
!! AGCATGTACGTAGGTTTTAT+AGG + chr2_1:64650106-64650125 Msa0217680:intron 35.0%
GCTGATTATATTAAGCGACA+AGG + chr2_1:64650276-64650295 Msa0217680:CDS 35.0%
ATTATATTAAGCGACAAGGG+AGG + chr2_1:64650280-64650299 Msa0217680:CDS 35.0%
TTATATTAAGCGACAAGGGA+GGG + chr2_1:64650281-64650300 Msa0217680:CDS 35.0%
!! TTGGCTCTAAATCAATGAAC+TGG - chr2_1:64650338-64650357 None:intergenic 35.0%
!!! TGTCAACTGACATGGTTTTT+TGG + chr2_1:64650401-64650420 Msa0217680:exon 35.0%
! AGAAATAGAATGCACTGATC+TGG + chr2_1:64650459-64650478 Msa0217680:three_prime_UTR 35.0%
!!! TGCACTGATCTGGTTTTATT+AGG + chr2_1:64650469-64650488 Msa0217680:three_prime_UTR 35.0%
CCGTTTCTGTTGTTCTTCTT+CGG - chr2_1:64644655-64644674 None:intergenic 40.0%
CCGAAGAAGAACAACAGAAA+CGG + chr2_1:64644652-64644671 Msa0217680:five_prime_UTR 40.0%
CACTAATTCCACTCTACCTA+TGG + chr2_1:64644758-64644777 Msa0217680:CDS 40.0%
GCAAACCTGATGAGATTCTT+CGG - chr2_1:64644824-64644843 None:intergenic 40.0%
AATAAACCTTGTTGCGTTGC+AGG - chr2_1:64645022-64645041 None:intergenic 40.0%
TCAACTTATACGAGCTCTCA+AGG - chr2_1:64645319-64645338 None:intergenic 40.0%
AGACCGTTTGAAAGAGCTTA+TGG - chr2_1:64645344-64645363 None:intergenic 40.0%
! TTCCATTAATCAGATGGTGG+TGG - chr2_1:64645411-64645430 None:intergenic 40.0%
ACAACACACGTTCACGTTAA+AGG + chr2_1:64645474-64645493 Msa0217680:intron 40.0%
ATTGAACTGCTGTAGTTTGG+GGG + chr2_1:64645564-64645583 Msa0217680:intron 40.0%
! GGCCAAAGCATCAAAGAAAA+AGG + chr2_1:64645863-64645882 Msa0217680:CDS 40.0%
AAATGAACCAGTTTGCAACG+TGG - chr2_1:64645940-64645959 None:intergenic 40.0%
CAAACTGTCATGCACATGAT+AGG + chr2_1:64646180-64646199 Msa0217680:intron 40.0%
!! CAGTTCCTTCAGGTTTTAAC+TGG - chr2_1:64646325-64646344 None:intergenic 40.0%
CAGTTAAAACCTGAAGGAAC+TGG + chr2_1:64646323-64646342 Msa0217680:intron 40.0%
AATACGGACATTCACCTGTT+TGG + chr2_1:64646359-64646378 Msa0217680:intron 40.0%
AACATCAAACCGTTCCAAAC+AGG - chr2_1:64646376-64646395 None:intergenic 40.0%
GGGTAGGAGAGATAATACAA+AGG + chr2_1:64646465-64646484 Msa0217680:intron 40.0%
AGAGAAAAGGGTCTCAATCT+CGG - chr2_1:64646520-64646539 None:intergenic 40.0%
!! GGATTTTGATGACACTCTCA+AGG - chr2_1:64646582-64646601 None:intergenic 40.0%
AGTGTCATCAAAATCCTCCT+TGG + chr2_1:64646586-64646605 Msa0217680:intron 40.0%
GAACAGTAGAAAATCCACCA+AGG - chr2_1:64646606-64646625 None:intergenic 40.0%
CTTTGGCAAACAAACAGCTT+TGG - chr2_1:64646688-64646707 None:intergenic 40.0%
CAAATCATTGTGCAGAGTCT+CGG - chr2_1:64646953-64646972 None:intergenic 40.0%
!! TATGCCTGCTTGTTATTCGA+TGG + chr2_1:64647277-64647296 Msa0217680:intron 40.0%
!! ATGCCTGCTTGTTATTCGAT+GGG + chr2_1:64647278-64647297 Msa0217680:intron 40.0%
ACCTCCGCATTTCTGAATAA+CGG - chr2_1:64647403-64647422 None:intergenic 40.0%
! GGAAAAGCACACGTTCATAT+AGG + chr2_1:64647522-64647541 Msa0217680:intron 40.0%
! TGATGAAGGTACACTTGAAG+AGG + chr2_1:64647630-64647649 Msa0217680:CDS 40.0%
AAGGCAAAATAAGGAGAGCA+AGG - chr2_1:64647734-64647753 None:intergenic 40.0%
GGGTTATAATTGTAACCGTG+TGG + chr2_1:64647816-64647835 Msa0217680:intron 40.0%
TATAATTGTAACCGTGTGGG+GGG + chr2_1:64647820-64647839 Msa0217680:intron 40.0%
TCTGCAGCAAGATCTTCTAA+GGG - chr2_1:64647906-64647925 None:intergenic 40.0%
TTCTGCAGCAAGATCTTCTA+AGG - chr2_1:64647907-64647926 None:intergenic 40.0%
AGGTGATAGAGGGAATAGAT+TGG - chr2_1:64647983-64648002 None:intergenic 40.0%
TCACACGATGAGTTATCCTT+CGG + chr2_1:64648299-64648318 Msa0217680:intron 40.0%
!! TAGACAAGTTTTATCGGGGA+AGG + chr2_1:64648621-64648640 Msa0217680:intron 40.0%
!! AGACAAGTTTTATCGGGGAA+GGG + chr2_1:64648622-64648641 Msa0217680:intron 40.0%
CATGTCATAGAGTTTCGACT+GGG + chr2_1:64649366-64649385 Msa0217680:intron 40.0%
ATAGCCTCATTATGCATAGC+CGG - chr2_1:64649448-64649467 None:intergenic 40.0%
GCACCAACAAACCGTAAATA+GGG - chr2_1:64649621-64649640 None:intergenic 40.0%
AGCACCAACAAACCGTAAAT+AGG - chr2_1:64649622-64649641 None:intergenic 40.0%
TATCAATCGCATCACATCTC+TGG + chr2_1:64649739-64649758 Msa0217680:CDS 40.0%
! ATCACATCTCTGGAAAGCAT+GGG + chr2_1:64649749-64649768 Msa0217680:CDS 40.0%
! GCCCATAACTTGCAACAATA+GGG - chr2_1:64650019-64650038 None:intergenic 40.0%
! AGCCCATAACTTGCAACAAT+AGG - chr2_1:64650020-64650039 None:intergenic 40.0%
!! TATTTTGTCAGGTCGGCTTT+CGG + chr2_1:64650194-64650213 Msa0217680:intron 40.0%
TCCTCAGCATAATGAGTCTT+TGG - chr2_1:64650357-64650376 None:intergenic 40.0%
TGCTGAGGACATTAGTAACA+TGG + chr2_1:64650368-64650387 Msa0217680:CDS 40.0%
TGAGGACATTAGTAACATGG+AGG + chr2_1:64650371-64650390 Msa0217680:CDS 40.0%
GAGATAACTGTCAACTGACA+TGG + chr2_1:64650393-64650412 Msa0217680:exon 40.0%
TGAAACCAGTTTCAGACAGA+TGG + chr2_1:64650685-64650704 Msa0217680:three_prime_UTR 40.0%
! TACTTCCATCTGTCTGAAAC+TGG - chr2_1:64650693-64650712 None:intergenic 40.0%
! GTTGTTCTTCTTCGGTTTGC+AGG - chr2_1:64644647-64644666 None:intergenic 45.0%
! CTGCAATGAGAAGTGTAGAG+AGG - chr2_1:64644738-64644757 None:intergenic 45.0%
ATGAGGATTGAGAATCGCGA+TGG - chr2_1:64644789-64644808 None:intergenic 45.0%
TTCGGAGGAAGATGAAGATG+AGG - chr2_1:64644806-64644825 None:intergenic 45.0%
TTCCTCCGAAGAATCTCATC+AGG + chr2_1:64644816-64644835 Msa0217680:CDS 45.0%
AACCTGATGAGATTCTTCGG+AGG - chr2_1:64644821-64644840 None:intergenic 45.0%
!! CATTAATCAGATGGTGGTGG+TGG - chr2_1:64645408-64645427 None:intergenic 45.0%
CACCACCACCATCTGATTAA+TGG + chr2_1:64645406-64645425 Msa0217680:intron 45.0%
GAAAGTGACAATGAAGCTGC+TGG + chr2_1:64645828-64645847 Msa0217680:CDS 45.0%
AGGAACTCAAAAGGCAAGAG+AGG + chr2_1:64645883-64645902 Msa0217680:CDS 45.0%
GGAACTCAAAAGGCAAGAGA+GGG + chr2_1:64645884-64645903 Msa0217680:CDS 45.0%
ATGTCATGACCAGTTCCTTC+AGG - chr2_1:64646335-64646354 None:intergenic 45.0%
TGAAGGAACTGGTCATGACA+TGG + chr2_1:64646334-64646353 Msa0217680:intron 45.0%
GGACATTCACCTGTTTGGAA+CGG + chr2_1:64646364-64646383 Msa0217680:intron 45.0%
TTTAGATAAAGGGGGGGCAA+AGG + chr2_1:64646429-64646448 Msa0217680:intron 45.0%
GTCATCAAAATCCTCCTTGG+TGG + chr2_1:64646589-64646608 Msa0217680:intron 45.0%
CAGTAGAAAATCCACCAAGG+AGG - chr2_1:64646603-64646622 None:intergenic 45.0%
!! TGCCTGCTTGTTATTCGATG+GGG + chr2_1:64647279-64647298 Msa0217680:intron 45.0%
! TTGTTATTCGATGGGGGAGA+GGG + chr2_1:64647286-64647305 Msa0217680:intron 45.0%
TTTGAAAGGCCGAAGAAGCT+CGG + chr2_1:64647363-64647382 Msa0217680:intron 45.0%
ACCGTTATTCAGAAATGCGG+AGG + chr2_1:64647399-64647418 Msa0217680:CDS 45.0%
TTCAGAAATGCGGAGGTTGA+AGG + chr2_1:64647406-64647425 Msa0217680:CDS 45.0%
GTGAGTCAACATCCTTGTTC+TGG + chr2_1:64647461-64647480 Msa0217680:intron 45.0%
CCTGAGACTAAACCAGAACA+AGG - chr2_1:64647476-64647495 None:intergenic 45.0%
!! CCTTGTTCTGGTTTAGTCTC+AGG + chr2_1:64647473-64647492 Msa0217680:intron 45.0%
GCACACGTTCATATAGGAAG+AGG + chr2_1:64647528-64647547 Msa0217680:intron 45.0%
AGAGGAAGCCAAAGCTCAAA+AGG + chr2_1:64647546-64647565 Msa0217680:CDS 45.0%
AAGCCAAAGCTCAAAAGGCT+AGG + chr2_1:64647551-64647570 Msa0217680:CDS 45.0%
AGCCAAAGCTCAAAAGGCTA+GGG + chr2_1:64647552-64647571 Msa0217680:CDS 45.0%
!! TTCCCTAGCCTTTTGAGCTT+TGG - chr2_1:64647557-64647576 None:intergenic 45.0%
CTGCGTTAGAGTTTGACAAG+TGG + chr2_1:64647587-64647606 Msa0217680:CDS 45.0%
CATTAGGTTTCGATGCCCTA+TGG - chr2_1:64647784-64647803 None:intergenic 45.0%
!! CATAGGGCATCGAAACCTAA+TGG + chr2_1:64647782-64647801 Msa0217680:intron 45.0%
CAGTTATAAAACCCCCCACA+CGG - chr2_1:64647834-64647853 None:intergenic 45.0%
TTGTGGGAGAAACAGTGTCA+CGG + chr2_1:64648067-64648086 Msa0217680:intron 45.0%
ATGGCAGTGAGTGATGTAAG+TGG - chr2_1:64648385-64648404 None:intergenic 45.0%
CTTACATCACTCACTGCCAT+CGG + chr2_1:64648385-64648404 Msa0217680:intron 45.0%
AGAAAGATCAGCCTATCCTG+AGG + chr2_1:64648478-64648497 Msa0217680:intron 45.0%
CAGCAAGTAGTTAGACAGCT+TGG - chr2_1:64649039-64649058 None:intergenic 45.0%
CCAGTCGAAACTCTATGACA+TGG - chr2_1:64649368-64649387 None:intergenic 45.0%
CCATGTCATAGAGTTTCGAC+TGG + chr2_1:64649365-64649384 Msa0217680:intron 45.0%
TAAAAGGGGAGGGTTGTGTT+AGG - chr2_1:64649413-64649432 None:intergenic 45.0%
! ACACAACCCTCCCCTTTTAT+TGG + chr2_1:64649414-64649433 Msa0217680:intron 45.0%
! CACAACCCTCCCCTTTTATT+GGG + chr2_1:64649415-64649434 Msa0217680:intron 45.0%
GAGCCCTATTTACGGTTTGT+TGG + chr2_1:64649615-64649634 Msa0217680:intron 45.0%
! CATCACATCTCTGGAAAGCA+TGG + chr2_1:64649748-64649767 Msa0217680:CDS 45.0%
TAGATGCCATGTCATTCGCA+AGG + chr2_1:64649925-64649944 Msa0217680:intron 45.0%
AGATGCCATGTCATTCGCAA+GGG + chr2_1:64649926-64649945 Msa0217680:intron 45.0%
ACCTACGTACATGCTAGAGT+AGG - chr2_1:64650101-64650120 None:intergenic 45.0%
TTTCTCACTTTGGGCTGTCT+AGG + chr2_1:64650147-64650166 Msa0217680:intron 45.0%
TTCTCACTTTGGGCTGTCTA+GGG + chr2_1:64650148-64650167 Msa0217680:intron 45.0%
!! ATTTTGTCAGGTCGGCTTTC+GGG + chr2_1:64650195-64650214 Msa0217680:intron 45.0%
! TTTCGGGTGTCATGGATGAT+AGG + chr2_1:64650211-64650230 Msa0217680:CDS 45.0%
! TTCGGGTGTCATGGATGATA+GGG + chr2_1:64650212-64650231 Msa0217680:CDS 45.0%
GCCAAAGACTCATTATGCTG+AGG + chr2_1:64650353-64650372 Msa0217680:CDS 45.0%
!! AACAATTAAATAATATTTAA+TGG - chr2_1:64647161-64647180 None:intergenic 5.0%
TGGCGTTTCCATAGGTAGAG+TGG - chr2_1:64644769-64644788 None:intergenic 50.0%
AATCGCGATGGCGTTTCCAT+AGG - chr2_1:64644777-64644796 None:intergenic 50.0%
AAACCTTGTTGCGTTGCAGG+CGG - chr2_1:64645019-64645038 None:intergenic 50.0%
CCAGTTTGCAACGTGGAATG+AGG - chr2_1:64645933-64645952 None:intergenic 50.0%
CCTCATTCCACGTTGCAAAC+TGG + chr2_1:64645930-64645949 Msa0217680:intron 50.0%
GGCAAAGGAGGAGGAAGAAT+GGG + chr2_1:64646444-64646463 Msa0217680:intron 50.0%
GCAAAGGAGGAGGAAGAATG+GGG + chr2_1:64646445-64646464 Msa0217680:intron 50.0%
AAGGTTTCTGCTGGCACTCA+TGG - chr2_1:64646639-64646658 None:intergenic 50.0%
GAGCAGAAGAAGGTTTCTGC+TGG - chr2_1:64646648-64646667 None:intergenic 50.0%
AAGCGAGTGCAAGTCCTATG+AGG + chr2_1:64646803-64646822 Msa0217680:intron 50.0%
!! GCCTGCTTGTTATTCGATGG+GGG + chr2_1:64647280-64647299 Msa0217680:intron 50.0%
TCCCCCATCGAATAACAAGC+AGG - chr2_1:64647284-64647303 None:intergenic 50.0%
!! CTTGTTATTCGATGGGGGAG+AGG + chr2_1:64647285-64647304 Msa0217680:intron 50.0%
TGTTATTCGATGGGGGAGAG+GGG + chr2_1:64647287-64647306 Msa0217680:intron 50.0%
CTTTGACTGCCGAGCTTCTT+CGG - chr2_1:64647375-64647394 None:intergenic 50.0%
! GTTGAAGGATGAAGAGCGTG+AGG + chr2_1:64647421-64647440 Msa0217680:CDS 50.0%
AGCTCAAAAGGCTAGGGAAG+AGG + chr2_1:64647558-64647577 Msa0217680:CDS 50.0%
AGGTACACTTGAAGAGGAGC+AGG + chr2_1:64647636-64647655 Msa0217680:CDS 50.0%
TGTGGGAGAAACAGTGTCAC+GGG + chr2_1:64648068-64648087 Msa0217680:intron 50.0%
TGTAAGTGGCCGATGGCTTA+TGG - chr2_1:64648371-64648390 None:intergenic 50.0%
TGAGTGATGTAAGTGGCCGA+TGG - chr2_1:64648378-64648397 None:intergenic 50.0%
GATATTAGTGGGATGGCCGA+TGG - chr2_1:64648404-64648423 None:intergenic 50.0%
TCGAGAGTCTACGCAAGATC+AGG + chr2_1:64648762-64648781 Msa0217680:intron 50.0%
AGAGTCTACGCAAGATCAGG+AGG + chr2_1:64648765-64648784 Msa0217680:intron 50.0%
TGACAGCTGACATCTCAGCT+AGG - chr2_1:64648998-64649017 None:intergenic 50.0%
CCAAGCCCAATAAAAGGGGA+GGG - chr2_1:64649423-64649442 None:intergenic 50.0%
! CCTCCCCTTTTATTGGGCTT+GGG + chr2_1:64649421-64649440 Msa0217680:intron 50.0%
GGTCCCAAGCCCAATAAAAG+GGG - chr2_1:64649427-64649446 None:intergenic 50.0%
CGGTCCCAAGCCCAATAAAA+GGG - chr2_1:64649428-64649447 None:intergenic 50.0%
! CCTTTTATTGGGCTTGGGAC+CGG + chr2_1:64649426-64649445 Msa0217680:intron 50.0%
ACTAAGTGGGGTCGGCTATA+TGG - chr2_1:64649524-64649543 None:intergenic 50.0%
ATATAGCCGACCCCACTTAG+TGG + chr2_1:64649523-64649542 Msa0217680:intron 50.0%
TATAGCCGACCCCACTTAGT+GGG + chr2_1:64649524-64649543 Msa0217680:intron 50.0%
! AAGCCTTGTCCCACTAAGTG+GGG - chr2_1:64649536-64649555 None:intergenic 50.0%
! CAAGCCTTGTCCCACTAAGT+GGG - chr2_1:64649537-64649556 None:intergenic 50.0%
TCAAGCCCTTGCGAATGACA+TGG - chr2_1:64649934-64649953 None:intergenic 50.0%
GCCTACTCTAGCATGTACGT+AGG + chr2_1:64650097-64650116 Msa0217680:intron 50.0%
TCTCACTTTGGGCTGTCTAG+GGG + chr2_1:64650149-64650168 Msa0217680:intron 50.0%
! TCGGGTGTCATGGATGATAG+GGG + chr2_1:64650213-64650232 Msa0217680:CDS 50.0%
! AGCTGCTGGTGATGAGCATG+AGG + chr2_1:64645842-64645861 Msa0217680:CDS 55.0%
AGATAAAGGGGGGGCAAAGG+AGG + chr2_1:64646432-64646451 Msa0217680:intron 55.0%
GGGCAAAGGAGGAGGAAGAA+TGG + chr2_1:64646443-64646462 Msa0217680:intron 55.0%
AGGAGGAGGAAGAATGGGGT+AGG + chr2_1:64646449-64646468 Msa0217680:intron 55.0%
TCTCGGCTGAGAGGCTACAA+TGG - chr2_1:64646503-64646522 None:intergenic 55.0%
GCTCGAGAGTGAGCAGAAGA+AGG - chr2_1:64646658-64646677 None:intergenic 55.0%
GTTATTCGATGGGGGAGAGG+GGG + chr2_1:64647288-64647307 Msa0217680:intron 55.0%
TTATTCGATGGGGGAGAGGG+GGG + chr2_1:64647289-64647308 Msa0217680:intron 55.0%
GTCTACGCAAGATCAGGAGG+TGG + chr2_1:64648768-64648787 Msa0217680:intron 55.0%
! CCCTCCCCTTTTATTGGGCT+TGG + chr2_1:64649420-64649439 Msa0217680:intron 55.0%
CCCAAGCCCAATAAAAGGGG+AGG - chr2_1:64649424-64649443 None:intergenic 55.0%
CCGGTCCCAAGCCCAATAAA+AGG - chr2_1:64649429-64649448 None:intergenic 55.0%
GGGACCGGCTATGCATAATG+AGG + chr2_1:64649441-64649460 Msa0217680:intron 55.0%
CTTGTCCCACTAAGTGGGGT+CGG - chr2_1:64649532-64649551 None:intergenic 55.0%
! CCAAGCCTTGTCCCACTAAG+TGG - chr2_1:64649538-64649557 None:intergenic 55.0%
CCACTTAGTGGGACAAGGCT+TGG + chr2_1:64649535-64649554 Msa0217680:intron 55.0%
CGTGCAGCAGGTTCTCTGAC+TGG - chr2_1:64644932-64644951 None:intergenic 60.0%
CAACCGTTCTCCGACGCATG+CGG - chr2_1:64644970-64644989 None:intergenic 60.0%
GGCAAGAGAGGGAAGCTCGA+CGG + chr2_1:64645895-64645914 Msa0217680:CDS 60.0%
TAAAGGGGGGGCAAAGGAGG+AGG + chr2_1:64646435-64646454 Msa0217680:intron 60.0%
GGGTCTCAATCTCGGCTGAG+AGG - chr2_1:64646512-64646531 None:intergenic 60.0%
! TGAGGCGCAGGAGCGTAAGT+TGG + chr2_1:64647439-64647458 Msa0217680:CDS 60.0%
CGACCCCACTTAGTGGGACA+AGG + chr2_1:64649530-64649549 Msa0217680:intron 60.0%
! AGGTCGGCTTTCGGGTGTCA+TGG + chr2_1:64650203-64650222 Msa0217680:intron 60.0%
TCGCCGCATGCGTCGGAGAA+CGG + chr2_1:64644964-64644983 Msa0217680:CDS 65.0%
CGTCGGAGAACGGTTGCGTC+TGG + chr2_1:64644974-64644993 Msa0217680:CDS 65.0%
GCTCCGCCTGCAACGCAACA+AGG + chr2_1:64645013-64645032 Msa0217680:CDS 65.0%
AGAGAGGGAAGCTCGACGGC+AGG + chr2_1:64645899-64645918 Msa0217680:CDS 65.0%
! GGATGAAGAGCGTGAGGCGC+AGG + chr2_1:64647427-64647446 Msa0217680:CDS 65.0%
GTAGCGGTGGCACGTGCAGC+AGG - chr2_1:64644944-64644963 None:intergenic 70.0%
ACGCATGCGGCGAGTAGCGG+TGG - chr2_1:64644957-64644976 None:intergenic 70.0%
CCGACGCATGCGGCGAGTAG+CGG - chr2_1:64644960-64644979 None:intergenic 70.0%
CCGCTACTCGCCGCATGCGT+CGG + chr2_1:64644957-64644976 Msa0217680:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 64644616 64650792 64644616 ID=Msa0217680;Name=Msa0217680
chr2_1 mRNA 64644616 64650792 64644616 ID=Msa0217680-mRNA-1;Parent=Msa0217680;Name=Msa0217680-mRNA-1;_AED=0.03;_eAED=0.03;_QI=96|1|1|1|1|1|8|382|295
chr2_1 exon 64644616 64644837 64644616 ID=Msa0217680-mRNA-1:exon:17924;Parent=Msa0217680-mRNA-1
chr2_1 exon 64644926 64645034 64644926 ID=Msa0217680-mRNA-1:exon:17925;Parent=Msa0217680-mRNA-1
chr2_1 exon 64645817 64645920 64645817 ID=Msa0217680-mRNA-1:exon:17926;Parent=Msa0217680-mRNA-1
chr2_1 exon 64647371 64647460 64647371 ID=Msa0217680-mRNA-1:exon:17927;Parent=Msa0217680-mRNA-1
chr2_1 exon 64647544 64647702 64647544 ID=Msa0217680-mRNA-1:exon:17928;Parent=Msa0217680-mRNA-1
chr2_1 exon 64647888 64647944 64647888 ID=Msa0217680-mRNA-1:exon:17929;Parent=Msa0217680-mRNA-1
chr2_1 exon 64649734 64649770 64649734 ID=Msa0217680-mRNA-1:exon:17930;Parent=Msa0217680-mRNA-1
chr2_1 exon 64650205 64650792 64650205 ID=Msa0217680-mRNA-1:exon:17931;Parent=Msa0217680-mRNA-1
chr2_1 five_prime_UTR 64644616 64644711 64644616 ID=Msa0217680-mRNA-1:five_prime_utr;Parent=Msa0217680-mRNA-1
chr2_1 CDS 64644712 64644837 64644712 ID=Msa0217680-mRNA-1:cds;Parent=Msa0217680-mRNA-1
chr2_1 CDS 64644926 64645034 64644926 ID=Msa0217680-mRNA-1:cds;Parent=Msa0217680-mRNA-1
chr2_1 CDS 64645817 64645920 64645817 ID=Msa0217680-mRNA-1:cds;Parent=Msa0217680-mRNA-1
chr2_1 CDS 64647371 64647460 64647371 ID=Msa0217680-mRNA-1:cds;Parent=Msa0217680-mRNA-1
chr2_1 CDS 64647544 64647702 64647544 ID=Msa0217680-mRNA-1:cds;Parent=Msa0217680-mRNA-1
chr2_1 CDS 64647888 64647944 64647888 ID=Msa0217680-mRNA-1:cds;Parent=Msa0217680-mRNA-1
chr2_1 CDS 64649734 64649770 64649734 ID=Msa0217680-mRNA-1:cds;Parent=Msa0217680-mRNA-1
chr2_1 CDS 64650205 64650410 64650205 ID=Msa0217680-mRNA-1:cds;Parent=Msa0217680-mRNA-1
chr2_1 three_prime_UTR 64650411 64650792 64650411 ID=Msa0217680-mRNA-1:three_prime_utr;Parent=Msa0217680-mRNA-1
Gene Sequence

>Msa0217680

ATGGATGATTTTTTCGTAGCAATCCTCTCTACACTTCTCATTGCAGCACTAATTCCACTCTACCTATGGAAACGCCATCGCGATTCTCAATCCTCATCTTCATCTTCCTCCGAAGAATCTCATCAGGCTCCAGTCAGAGAACCTGCTGCACGTGCCACCGCTACTCGCCGCATGCGTCGGAGAACGGTTGCGTCTGGTGCTAGCTCTTCATCAGCTCCGCCTGCAACGCAACAAGAGTCTGGAGATGAAAGTGACAATGAAGCTGCTGGTGATGAGCATGAGGCCAAAGCATCAAAGAAAAAGGAACTCAAAAGGCAAGAGAGGGAAGCTCGACGGCAGGCCGAAGAAGCTCGGCAGTCAAAGCAAGACCGTTATTCAGAAATGCGGAGGTTGAAGGATGAAGAGCGTGAGGCGCAGGAGCGTAAGTTGGAAGAGGAAGCCAAAGCTCAAAAGGCTAGGGAAGAGGAAGCTGCTGCGTTAGAGTTTGACAAGTGGAAAGGTGAATTTTCAGTTGATGATGAAGGTACACTTGAAGAGGAGCAGGATAAAACTGAAGATTTGCTTACCAATTTTGTTGAATATATAAAGAAGCACAAATGTGTTCCCTTAGAAGATCTTGCTGCAGAATTTAAATTGCGCACACAGGAATGTATCAATCGCATCACATCTCTGGAAAGCATGGGTCGGCTTTCGGGTGTCATGGATGATAGGGGAAAATTCATTTACATCTCACAGGAAGAGATGAAAGCTGTTGCTGATTATATTAAGCGACAAGGGAGGGTTAGCATTTCCCATTTAGCTAGTAAATCAAACCAGTTCATTGATTTAGAGCCAAAGACTCATTATGCTGAGGACATTAGTAACATGGAGGAGATAACTGTCAACTGA

Protein sequence

>Msa0217680

MDDFFVAILSTLLIAALIPLYLWKRHRDSQSSSSSSSEESHQAPVREPAARATATRRMRRRTVASGASSSSAPPATQQESGDESDNEAAGDEHEAKASKKKELKRQEREARRQAEEARQSKQDRYSEMRRLKDEEREAQERKLEEEAKAQKAREEEAAALEFDKWKGEFSVDDEGTLEEEQDKTEDLLTNFVEYIKKHKCVPLEDLAAEFKLRTQECINRITSLESMGRLSGVMDDRGKFIYISQEEMKAVADYIKRQGRVSISHLASKSNQFIDLEPKTHYAEDISNMEEITVN*