Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489710 | XP_003598309.1 | 94.070 | 489 | 11 | 1 | 1 | 489 | 1 | 471 | 0.0 | 942 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489710 | sp|Q9FKT0|ARP8_ARATH | 62.986 | 489 | 155 | 6 | 3 | 485 | 1 | 469 | 0.0 | 632 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489710 | G7J0F5 | 94.070 | 489 | 11 | 1 | 1 | 489 | 1 | 471 | 0.0 | 942 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007080 | Msa0489710 | 0.800878 | 1.172115e-48 | -8.615850e-47 |
| Msa0050760 | Msa0489710 | 0.810400 | 1.174679e-50 | -8.615850e-47 |
| Msa0051460 | Msa0489710 | 0.809880 | 1.520675e-50 | -8.615850e-47 |
| Msa0143920 | Msa0489710 | 0.806060 | 9.882200e-50 | -8.615850e-47 |
| Msa0223380 | Msa0489710 | 0.801278 | 9.711387e-49 | -8.615850e-47 |
| Msa0233610 | Msa0489710 | 0.812224 | 4.722169e-51 | -8.615850e-47 |
| Msa0365490 | Msa0489710 | 0.807948 | 3.938767e-50 | -8.615850e-47 |
| Msa0438050 | Msa0489710 | 0.824568 | 7.524475e-54 | -8.615850e-47 |
| Msa0442250 | Msa0489710 | 0.840768 | 7.127772e-58 | -8.615850e-47 |
| Msa0458440 | Msa0489710 | 0.811727 | 6.057820e-51 | -8.615850e-47 |
| Msa0464900 | Msa0489710 | 0.834924 | 2.261962e-56 | -8.615850e-47 |
| Msa0465680 | Msa0489710 | -0.822420 | 2.391558e-53 | -8.615850e-47 |
| Msa0475410 | Msa0489710 | 0.800097 | 1.690704e-48 | -8.615850e-47 |
| Msa0257250 | Msa0489710 | 0.807644 | 4.569960e-50 | -8.615850e-47 |
| Msa0266000 | Msa0489710 | -0.813065 | 3.090956e-51 | -8.615850e-47 |
| Msa0347650 | Msa0489710 | 0.927630 | 8.986480e-92 | -8.615850e-47 |
| Msa0489710 | Msa0536220 | 0.810676 | 1.023724e-50 | -8.615850e-47 |
| Msa0489710 | Msa0543900 | 0.800017 | 1.755415e-48 | -8.615850e-47 |
| Msa0489710 | Msa0553460 | 0.804809 | 1.807863e-49 | -8.615850e-47 |
| Msa0489710 | Msa0599580 | 0.817706 | 2.869424e-52 | -8.615850e-47 |
| Msa0489710 | Msa0610590 | 0.800232 | 1.587145e-48 | -8.615850e-47 |
| Msa0489710 | Msa0651190 | 0.810086 | 1.372658e-50 | -8.615850e-47 |
| Msa0489710 | Msa0722930 | 0.810591 | 1.068041e-50 | -8.615850e-47 |
| Msa0489710 | Msa0723140 | 0.810487 | 1.125046e-50 | -8.615850e-47 |
| Msa0489710 | Msa0757080 | 0.803955 | 2.722741e-49 | -8.615850e-47 |
| Msa0489710 | Msa0843280 | 0.811602 | 6.448102e-51 | -8.615850e-47 |
| Msa0489710 | Msa0899230 | 0.812919 | 3.327050e-51 | -8.615850e-47 |
| Msa0489710 | Msa0900200 | 0.805314 | 1.417505e-49 | -8.615850e-47 |
| Msa0489710 | Msa0908170 | 0.816386 | 5.679478e-52 | -8.615850e-47 |
| Msa0489710 | Msa0910980 | -0.807996 | 3.847964e-50 | -8.615850e-47 |
| Msa0489710 | Msa0965520 | 0.821642 | 3.622779e-53 | -8.615850e-47 |
| Msa0489710 | Msa0999040 | 0.803800 | 2.932171e-49 | -8.615850e-47 |
| Msa0489710 | Msa1000020 | 0.834052 | 3.744487e-56 | -8.615850e-47 |
| Msa0489710 | Msa1015840 | 0.807328 | 5.333534e-50 | -8.615850e-47 |
| Msa0489710 | Msa1080790 | 0.800027 | 1.747285e-48 | -8.615850e-47 |
| Msa0489710 | Msa1092090 | 0.811663 | 6.253915e-51 | -8.615850e-47 |
| Msa0489710 | Msa1118930 | 0.805501 | 1.295162e-49 | -8.615850e-47 |
| Msa0489710 | Msa1125080 | 0.804684 | 1.919040e-49 | -8.615850e-47 |
| Msa0489710 | Msa1228160 | -0.804009 | 2.652902e-49 | -8.615850e-47 |
| Msa0489710 | Msa1233500 | 0.819894 | 9.136390e-53 | -8.615850e-47 |
| Msa0489710 | Msa1419110 | 0.802916 | 4.470033e-49 | -8.615850e-47 |
| Msa0489710 | Msa1440600 | 0.809499 | 1.835631e-50 | -8.615850e-47 |
| Msa0489710 | Msa1457670 | -0.807266 | 5.496473e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489710 | MtrunA17_Chr3g0080021 | 94.070 | 489 | 11 | 1 | 1 | 489 | 1 | 471 | 0.0 | 942 |
| Msa0489710 | MtrunA17_Chr8g0369101 | 70.264 | 454 | 116 | 5 | 36 | 489 | 43 | 477 | 0.0 | 656 |
| Msa0489710 | MtrunA17_Chr7g0223901 | 31.313 | 297 | 180 | 9 | 197 | 485 | 91 | 371 | 3.04e-42 | 154 |
| Msa0489710 | MtrunA17_Chr2g0328091 | 30.640 | 297 | 182 | 9 | 197 | 485 | 91 | 371 | 5.42e-41 | 150 |
| Msa0489710 | MtrunA17_Chr6g0448881 | 29.966 | 297 | 184 | 9 | 197 | 485 | 91 | 371 | 5.59e-41 | 150 |
| Msa0489710 | MtrunA17_Chr1g0175391 | 30.640 | 297 | 182 | 9 | 197 | 485 | 91 | 371 | 2.94e-40 | 149 |
| Msa0489710 | MtrunA17_Chr2g0278591 | 31.228 | 285 | 172 | 9 | 197 | 473 | 91 | 359 | 5.04e-40 | 148 |
| Msa0489710 | MtrunA17_Chr3g0129641 | 30.976 | 297 | 181 | 9 | 197 | 485 | 91 | 371 | 7.88e-40 | 147 |
| Msa0489710 | MtrunA17_Chr7g0258721 | 30.303 | 297 | 183 | 9 | 197 | 485 | 91 | 371 | 1.22e-39 | 147 |
| Msa0489710 | MtrunA17_Chr7g0224401 | 26.351 | 296 | 178 | 11 | 199 | 472 | 92 | 369 | 8.15e-22 | 97.4 |
| Msa0489710 | MtrunA17_Chr3g0089031 | 25.177 | 282 | 183 | 11 | 211 | 482 | 90 | 353 | 1.61e-17 | 84.0 |
| Msa0489710 | MtrunA17_Chr8g0381261 | 24.125 | 257 | 163 | 9 | 198 | 435 | 110 | 353 | 1.17e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489710 | AT5G56180.1 | 62.986 | 489 | 155 | 6 | 3 | 485 | 1 | 469 | 0.0 | 632 |
| Msa0489710 | AT5G56180.3 | 71.010 | 307 | 88 | 1 | 179 | 485 | 32 | 337 | 2.67e-168 | 478 |
| Msa0489710 | AT5G56180.2 | 62.500 | 384 | 118 | 6 | 3 | 380 | 1 | 364 | 2.63e-167 | 478 |
| Msa0489710 | AT3G12110.1 | 31.313 | 297 | 180 | 9 | 197 | 485 | 91 | 371 | 2.16e-42 | 155 |
| Msa0489710 | AT2G42090.1 | 30.952 | 294 | 176 | 10 | 197 | 481 | 80 | 355 | 7.72e-41 | 150 |
| Msa0489710 | AT3G53750.1 | 30.303 | 297 | 183 | 9 | 197 | 485 | 91 | 371 | 1.38e-40 | 150 |
| Msa0489710 | AT3G53750.2 | 30.303 | 297 | 183 | 9 | 197 | 485 | 91 | 371 | 1.38e-40 | 150 |
| Msa0489710 | AT2G37620.1 | 30.303 | 297 | 183 | 9 | 197 | 485 | 91 | 371 | 1.38e-40 | 150 |
| Msa0489710 | AT2G37620.3 | 30.303 | 297 | 183 | 9 | 197 | 485 | 91 | 371 | 1.38e-40 | 150 |
| Msa0489710 | AT2G37620.2 | 30.303 | 297 | 183 | 9 | 197 | 485 | 91 | 371 | 1.38e-40 | 150 |
| Msa0489710 | AT2G37620.4 | 30.303 | 297 | 183 | 9 | 197 | 485 | 91 | 371 | 1.38e-40 | 150 |
| Msa0489710 | AT5G09810.1 | 31.313 | 297 | 180 | 9 | 197 | 485 | 91 | 371 | 8.18e-40 | 148 |
| Msa0489710 | AT2G42100.1 | 29.352 | 293 | 183 | 9 | 197 | 481 | 92 | 368 | 1.74e-38 | 144 |
| Msa0489710 | AT3G46520.2 | 29.630 | 297 | 185 | 8 | 197 | 485 | 91 | 371 | 3.60e-38 | 143 |
| Msa0489710 | AT3G46520.1 | 29.630 | 297 | 185 | 8 | 197 | 485 | 91 | 371 | 3.60e-38 | 143 |
| Msa0489710 | AT1G49240.1 | 30.634 | 284 | 173 | 9 | 197 | 472 | 91 | 358 | 8.42e-38 | 142 |
| Msa0489710 | AT3G18780.2 | 30.634 | 284 | 173 | 9 | 197 | 472 | 91 | 358 | 9.31e-38 | 142 |
| Msa0489710 | AT3G18780.3 | 30.634 | 284 | 173 | 9 | 197 | 472 | 91 | 358 | 9.31e-38 | 142 |
| Msa0489710 | AT5G59370.2 | 29.293 | 297 | 186 | 8 | 197 | 485 | 91 | 371 | 1.38e-37 | 142 |
| Msa0489710 | AT5G59370.1 | 29.293 | 297 | 186 | 8 | 197 | 485 | 91 | 371 | 1.38e-37 | 142 |
| Msa0489710 | AT3G18780.1 | 30.714 | 280 | 170 | 9 | 197 | 468 | 91 | 354 | 5.30e-37 | 140 |
| Msa0489710 | AT2G42170.1 | 27.907 | 301 | 188 | 9 | 194 | 485 | 43 | 323 | 1.77e-35 | 135 |
| Msa0489710 | AT2G42170.3 | 27.907 | 301 | 188 | 9 | 194 | 485 | 43 | 323 | 1.77e-35 | 135 |
| Msa0489710 | AT2G42170.4 | 28.873 | 284 | 173 | 9 | 194 | 468 | 43 | 306 | 3.10e-34 | 131 |
| Msa0489710 | AT2G42170.2 | 28.873 | 284 | 173 | 9 | 194 | 468 | 43 | 306 | 3.10e-34 | 131 |
| Msa0489710 | AT2G42170.5 | 29.075 | 227 | 143 | 6 | 267 | 485 | 9 | 225 | 3.19e-26 | 107 |
| Msa0489710 | AT3G27000.1 | 24.538 | 379 | 215 | 14 | 150 | 472 | 6 | 369 | 1.92e-20 | 93.6 |
| Msa0489710 | AT3G60830.1 | 26.335 | 281 | 178 | 10 | 211 | 481 | 91 | 352 | 8.87e-20 | 91.3 |
| Msa0489710 | AT1G13180.1 | 22.601 | 323 | 203 | 13 | 192 | 481 | 103 | 411 | 3.85e-12 | 68.6 |
Find 126 sgRNAs with CRISPR-Local
Find 442 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGAAACTAATTTGATTTC+TGG | 0.119091 | 3_4:+10365724 | Msa0489710:CDS |
| CTGTATCTGATAATCGTTTA+TGG | 0.171658 | 3_4:+10365647 | Msa0489710:CDS |
| ACAATCTCAAAAGTGATATT+TGG | 0.176810 | 3_4:-10372518 | None:intergenic |
| CTGTCATTCAAACATATTTA+TGG | 0.206225 | 3_4:+10367484 | Msa0489710:CDS |
| TGTACAATGATTGAAAATTT+AGG | 0.234560 | 3_4:-10370536 | None:intergenic |
| ATTCTGCACCCTCCAACTTT+AGG | 0.242008 | 3_4:+10372428 | Msa0489710:three_prime_UTR |
| TGAGCACATTTCCTGGTTCT+TGG | 0.255805 | 3_4:+10372311 | Msa0489710:CDS |
| GGTTCCGGCTATTGCAAATT+TGG | 0.256929 | 3_4:+10367636 | Msa0489710:CDS |
| GCCGTTGCCGTGTGGTGATA+TGG | 0.266541 | 3_4:+10365519 | Msa0489710:CDS |
| TTCTGCACCCTCCAACTTTA+GGG | 0.267008 | 3_4:+10372429 | Msa0489710:three_prime_UTR |
| CCTGGTGCTATTATCATTGA+TGG | 0.305349 | 3_4:+10367523 | Msa0489710:CDS |
| TTTAGGGAGGCTGGAATAAT+AGG | 0.307504 | 3_4:+10372445 | Msa0489710:three_prime_UTR |
| GAAGAATAGTTGGTTAAGTT+TGG | 0.323234 | 3_4:-10365339 | None:intergenic |
| TGAGGCCGAGCCTAGGCTTC+TGG | 0.337824 | 3_4:-10372357 | None:intergenic |
| TCTGGAATAGCTGTTAATAT+AGG | 0.337868 | 3_4:+10370070 | Msa0489710:CDS |
| AACTGCATGTTTGCCAGGTT+TGG | 0.340994 | 3_4:+10371311 | Msa0489710:CDS |
| AGCAAATATGCTTGTCCATC+GGG | 0.346514 | 3_4:+10367663 | Msa0489710:CDS |
| GGTCAGAGAGCTCAGGTTCC+TGG | 0.353049 | 3_4:+10367505 | Msa0489710:CDS |
| TATGCTGCAAAACGAACTTC+TGG | 0.356150 | 3_4:+10370052 | Msa0489710:CDS |
| TGAATGACAGCTGGGGCCTC+TGG | 0.370029 | 3_4:-10367471 | None:intergenic |
| TTATTCAAGCCACATCTTGC+TGG | 0.370601 | 3_4:+10370809 | Msa0489710:CDS |
| CTCATCAATCTGATCCATCT+TGG | 0.373229 | 3_4:+10365686 | Msa0489710:CDS |
| CTGGGAGCACTGAAAGTTAC+AGG | 0.382783 | 3_4:+10370483 | Msa0489710:CDS |
| CAGGAACATTCAAGTCGAAC+AGG | 0.394489 | 3_4:-10369443 | None:intergenic |
| GAAAGTTACAGGATTTCTTA+AGG | 0.398199 | 3_4:+10370494 | Msa0489710:CDS |
| GAAAGAGAGTGAAGAATAGT+TGG | 0.401603 | 3_4:-10365349 | None:intergenic |
| CGGTGTGGAAGTTGTGGGAC+TGG | 0.402375 | 3_4:+10370464 | Msa0489710:CDS |
| CCCTCCAACTTTAGGGAGGC+TGG | 0.409889 | 3_4:+10372436 | Msa0489710:three_prime_UTR |
| GTACAGTTGAGCACATTTCC+TGG | 0.411777 | 3_4:+10372304 | Msa0489710:intron |
| TCCGTGAATTGCAGATCCTT+TGG | 0.415733 | 3_4:+10367448 | Msa0489710:CDS |
| GGTGTGGAAGTTGTGGGACT+GGG | 0.427025 | 3_4:+10370465 | Msa0489710:CDS |
| TTACCATCATAATGGCATAT+TGG | 0.430990 | 3_4:-10369187 | None:intergenic |
| GGAGGAACTGCATGTTTGCC+AGG | 0.432955 | 3_4:+10371306 | Msa0489710:CDS |
| TTTCGAGTACTTCAAATCCT+TGG | 0.433199 | 3_4:-10372625 | None:intergenic |
| CCGTTGCCGTGTGGTGATAT+GGG | 0.441345 | 3_4:+10365520 | Msa0489710:CDS |
| CTAATTCCATTGGACATGTA+TGG | 0.441876 | 3_4:-10371791 | None:intergenic |
| CCGGCTATTGCAAATTTGGT+TGG | 0.449861 | 3_4:+10367640 | Msa0489710:CDS |
| AGCCTAGGCTCGGCCTCATA+TGG | 0.450315 | 3_4:+10372362 | Msa0489710:CDS |
| TGCCATTCTGCAGGATTACC+AGG | 0.453869 | 3_4:+10371249 | Msa0489710:CDS |
| CACTGTTCGCGCTTTGAAAG+AGG | 0.459873 | 3_4:+10370557 | Msa0489710:CDS |
| AACTATAGATATTATGATAT+AGG | 0.461050 | 3_4:+10372495 | Msa0489710:three_prime_UTR |
| CCAGGCCATAGCTCGTTGTA+TGG | 0.462389 | 3_4:+10371221 | Msa0489710:CDS |
| AAGTTGTTGTCTCGATGCTC+TGG | 0.463461 | 3_4:-10369400 | None:intergenic |
| TCATCAATCTGATCCATCTT+GGG | 0.464169 | 3_4:+10365687 | Msa0489710:CDS |
| AACAAAATAATCACCATATG+AGG | 0.466238 | 3_4:-10372375 | None:intergenic |
| GCATGTTTGCCAGGTTTGGC+AGG | 0.469643 | 3_4:+10371315 | Msa0489710:CDS |
| TGTTGTTCATGTGAAGATGT+TGG | 0.470416 | 3_4:-10365481 | None:intergenic |
| AAATATGTTTGAATGACAGC+TGG | 0.475153 | 3_4:-10367480 | None:intergenic |
| TTGATTTCTCGGCAGGATGC+AGG | 0.481990 | 3_4:+10369129 | Msa0489710:intron |
| TCAACTACCAAGTGACATCT+TGG | 0.482364 | 3_4:+10365552 | Msa0489710:CDS |
| TGCTGTTTGTGCTGTCAACC+AGG | 0.484017 | 3_4:+10369464 | Msa0489710:CDS |
| AATGTAACTTACCATCATAA+TGG | 0.484345 | 3_4:-10369195 | None:intergenic |
| TATTCCAGCCTCCCTAAAGT+TGG | 0.484385 | 3_4:-10372440 | None:intergenic |
| TCATTTCAAGCTACAGGAGA+TGG | 0.489367 | 3_4:+10370743 | Msa0489710:CDS |
| ATGGAGAATTGCCATTCTGC+AGG | 0.493934 | 3_4:+10371240 | Msa0489710:CDS |
| TCCAGCCTCCCTAAAGTTGG+AGG | 0.502536 | 3_4:-10372437 | None:intergenic |
| TTGAGTCGCCAATGTATACT+AGG | 0.505523 | 3_4:+10368272 | Msa0489710:CDS |
| GCCAAAGGATCTGCAATTCA+CGG | 0.507616 | 3_4:-10367449 | None:intergenic |
| ATTGGTATAGAAACAATAAC+CGG | 0.510568 | 3_4:-10369169 | None:intergenic |
| AATAGTACTAAGAAAATTGT+GGG | 0.510585 | 3_4:+10365438 | Msa0489710:CDS |
| AGAAGTTCCGCCAGAAGCCT+AGG | 0.514084 | 3_4:+10372347 | Msa0489710:CDS |
| CAAGCATCATTTCAAGCTAC+AGG | 0.515742 | 3_4:+10370737 | Msa0489710:CDS |
| ATTTCCTGGTTCTTGGTGTG+TGG | 0.517934 | 3_4:+10372318 | Msa0489710:CDS |
| AAACATTTACCTGCCAAACC+TGG | 0.518419 | 3_4:-10371324 | None:intergenic |
| CCATACAACGAGCTATGGCC+TGG | 0.521337 | 3_4:-10371221 | None:intergenic |
| TAAGGTCGGTGTGGAAGTTG+TGG | 0.524103 | 3_4:+10370458 | Msa0489710:CDS |
| AAGGTCGGTGTGGAAGTTGT+GGG | 0.524892 | 3_4:+10370459 | Msa0489710:CDS |
| CAATAGTACTAAGAAAATTG+TGG | 0.529420 | 3_4:+10365437 | Msa0489710:CDS |
| TTGATGGGTCTAGAGATGAT+TGG | 0.531384 | 3_4:+10367395 | Msa0489710:intron |
| TATTTATGGTCAGAGAGCTC+AGG | 0.532621 | 3_4:+10367498 | Msa0489710:CDS |
| TGGTTCGGAGCAAAGATGAT+TGG | 0.533936 | 3_4:+10371848 | Msa0489710:CDS |
| CCAACCAAATTTGCAATAGC+CGG | 0.539236 | 3_4:-10367640 | None:intergenic |
| GAGCAAATATGCTTGTCCAT+CGG | 0.539547 | 3_4:+10367662 | Msa0489710:CDS |
| CATACGGTGTCGATACTCAA+TGG | 0.542865 | 3_4:+10371828 | Msa0489710:CDS |
| ATTTAGAATACTAACGGAAG+AGG | 0.542951 | 3_4:-10365751 | None:intergenic |
| TAATGGTAAAGTAATGCGTA+AGG | 0.544895 | 3_4:+10370440 | Msa0489710:CDS |
| GATTACCAGGTGACAACGAT+TGG | 0.546596 | 3_4:+10371262 | Msa0489710:CDS |
| TTGTACAGAAAGATTAGAGA+AGG | 0.552480 | 3_4:+10371748 | Msa0489710:intron |
| CACCATATGAGGCCGAGCCT+AGG | 0.553488 | 3_4:-10372364 | None:intergenic |
| CAGCTGGGGCCTCTGGCCAA+AGG | 0.557706 | 3_4:-10367464 | None:intergenic |
| GGTGTCGATACTCAATGGTT+CGG | 0.558157 | 3_4:+10371833 | Msa0489710:CDS |
| ATACCAATATGCCATTATGA+TGG | 0.560403 | 3_4:+10369184 | Msa0489710:CDS |
| TTGTACCAATCGTTGTCACC+TGG | 0.561702 | 3_4:-10371267 | None:intergenic |
| ATTTGAACCAAGATGTCACT+TGG | 0.563145 | 3_4:-10365559 | None:intergenic |
| CTTCCTCCATACATGTCCAA+TGG | 0.567153 | 3_4:+10371785 | Msa0489710:CDS |
| CATTGAGTATCGACACCGTA+TGG | 0.567226 | 3_4:-10371827 | None:intergenic |
| AGGTATGACTCTAATTCCAT+TGG | 0.572150 | 3_4:-10371801 | None:intergenic |
| ATTCTCCATACAACGAGCTA+TGG | 0.573708 | 3_4:-10371226 | None:intergenic |
| AATATGTTTGAATGACAGCT+GGG | 0.574569 | 3_4:-10367479 | None:intergenic |
| AATATGATTGAAAATATCCA+AGG | 0.585942 | 3_4:+10372608 | Msa0489710:three_prime_UTR |
| TGGTTGACAGCACAAACAGC+AGG | 0.587707 | 3_4:-10369462 | None:intergenic |
| AATGTTGCAGATCGCCCCGA+TGG | 0.593723 | 3_4:-10367678 | None:intergenic |
| TTTAGAATACTAACGGAAGA+GGG | 0.595363 | 3_4:-10365750 | None:intergenic |
| CACCTGGTAATCCTGCAGAA+TGG | 0.600972 | 3_4:-10371251 | None:intergenic |
| TTCCGCCAGAAGCCTAGGCT+CGG | 0.603172 | 3_4:+10372352 | Msa0489710:CDS |
| CAGAATAATTTACACTATCG+AGG | 0.604138 | 3_4:-10372411 | None:intergenic |
| TGTTTACACTTTCAAAAGAG+CGG | 0.606191 | 3_4:+10370768 | Msa0489710:CDS |
| CCATCAATGATAATAGCACC+AGG | 0.611496 | 3_4:-10367523 | None:intergenic |
| TATGGCCTGGTGTAAACCTA+CGG | 0.612970 | 3_4:-10371208 | None:intergenic |
| TCTTGGTATAGGCAAGCCGT+AGG | 0.613936 | 3_4:+10371192 | Msa0489710:intron |
| GGCCGAGCCTAGGCTTCTGG+CGG | 0.615411 | 3_4:-10372354 | None:intergenic |
| GATCAGATTGATGAGTCTGA+AGG | 0.616079 | 3_4:-10365678 | None:intergenic |
| GTATCGACACCGTATGGAGG+AGG | 0.616538 | 3_4:-10371821 | None:intergenic |
| AGAGTCATACCTCCTCCATA+CGG | 0.619890 | 3_4:+10371812 | Msa0489710:CDS |
| TGCACCCTCCAACTTTAGGG+AGG | 0.623496 | 3_4:+10372432 | Msa0489710:three_prime_UTR |
| GGTAAAGTAATGCGTAAGGT+CGG | 0.623567 | 3_4:+10370444 | Msa0489710:CDS |
| ATTGCAGATCCTTTGGCCAG+AGG | 0.623599 | 3_4:+10367455 | Msa0489710:CDS |
| TGTCGAAGCCTAGTATACAT+TGG | 0.632551 | 3_4:-10368280 | None:intergenic |
| CCAGCCTCCCTAAAGTTGGA+GGG | 0.636770 | 3_4:-10372436 | None:intergenic |
| AGGAACATTCAAGTCGAACA+GGG | 0.639526 | 3_4:-10369442 | None:intergenic |
| ACTTACACTCCAGCAAGATG+TGG | 0.640629 | 3_4:-10370818 | None:intergenic |
| AAGGATCTGCAATTCACGGA+CGG | 0.643374 | 3_4:-10367445 | None:intergenic |
| AGTTACAGGATTTCTTAAGG+AGG | 0.643577 | 3_4:+10370497 | Msa0489710:CDS |
| ATTCCATTGGACATGTATGG+AGG | 0.644464 | 3_4:-10371788 | None:intergenic |
| TGTATGGAGGAAGTAAGCCA+TGG | 0.649099 | 3_4:-10371775 | None:intergenic |
| CCCATATCACCACACGGCAA+CGG | 0.655566 | 3_4:-10365520 | None:intergenic |
| TGAGTATCGACACCGTATGG+AGG | 0.656190 | 3_4:-10371824 | None:intergenic |
| AGATTAGAGAAGGAACTCCA+TGG | 0.658596 | 3_4:+10371758 | Msa0489710:CDS |
| GCAAATATGCTTGTCCATCG+GGG | 0.676281 | 3_4:+10367664 | Msa0489710:CDS |
| TTGGCACATGATGAAAACGC+GGG | 0.676324 | 3_4:-10365320 | None:intergenic |
| CAAGTGTTGCCGTTGCCGTG+TGG | 0.677360 | 3_4:+10365511 | Msa0489710:CDS |
| GCAAGCCGTAGGTTTACACC+AGG | 0.677496 | 3_4:+10371203 | Msa0489710:CDS |
| AGTAATGCGTAAGGTCGGTG+TGG | 0.683151 | 3_4:+10370449 | Msa0489710:CDS |
| TTTGGCACATGATGAAAACG+CGG | 0.698623 | 3_4:-10365321 | None:intergenic |
| ATATGTTTGAATGACAGCTG+GGG | 0.703396 | 3_4:-10367478 | None:intergenic |
| AATTCACCCATATCACCACA+CGG | 0.718407 | 3_4:-10365526 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAAATTTGTTAATTTC+AGG | + | chr3_4:10366832-10366851 | Msa0489710:intron | 10.0% |
| !!! | TTTTAAATTTGTTAATTTCA+GGG | + | chr3_4:10366833-10366852 | Msa0489710:intron | 10.0% |
| !!! | ATATTATATTTTAATTAGGA+GGG | - | chr3_4:10368175-10368194 | None:intergenic | 10.0% |
| !!! | TATATTATATTTTAATTAGG+AGG | - | chr3_4:10368176-10368195 | None:intergenic | 10.0% |
| !!! | TTATATATTTTGAAAAATGT+AGG | + | chr3_4:10370015-10370034 | Msa0489710:intron | 10.0% |
| !!! | AAGAAAATTTAGAATACTAA+CGG | - | chr3_4:10365760-10365779 | None:intergenic | 15.0% |
| !!! | TAAAGGATTTCTAAATTTTA+TGG | + | chr3_4:10367173-10367192 | Msa0489710:intron | 15.0% |
| !!! | TTTATTTTTTTTAGCTTTGA+TGG | + | chr3_4:10367291-10367310 | Msa0489710:intron | 15.0% |
| !!! | TTATTTTTTTTAGCTTTGAT+GGG | + | chr3_4:10367292-10367311 | Msa0489710:intron | 15.0% |
| !! | ATGTATTTGTGTTATAAATA+GGG | - | chr3_4:10368103-10368122 | None:intergenic | 15.0% |
| !! | TATGTATTTGTGTTATAAAT+AGG | - | chr3_4:10368104-10368123 | None:intergenic | 15.0% |
| !!! | GGTTATATATTGTTTTAATT+AGG | - | chr3_4:10368151-10368170 | None:intergenic | 15.0% |
| !!! | AAGTGTTTTTAGAAAATTAA+CGG | - | chr3_4:10368505-10368524 | None:intergenic | 15.0% |
| !! | CAAAATATTGTAAAAGAAAA+CGG | + | chr3_4:10368709-10368728 | Msa0489710:intron | 15.0% |
| !! | TATATTCTCTTAAGTTTATT+AGG | + | chr3_4:10368750-10368769 | Msa0489710:intron | 15.0% |
| !!! | TCCCTTATTTAAAAATATTA+GGG | - | chr3_4:10368816-10368835 | None:intergenic | 15.0% |
| !!! | TTCCCTTATTTAAAAATATT+AGG | - | chr3_4:10368817-10368836 | None:intergenic | 15.0% |
| !!! | TTAATTACAAATTTTCTGTT+TGG | + | chr3_4:10370654-10370673 | Msa0489710:intron | 15.0% |
| !!! | GTTTTTATATTTTCACTTAT+TGG | + | chr3_4:10371147-10371166 | Msa0489710:intron | 15.0% |
| !! | AACTATAGATATTATGATAT+AGG | + | chr3_4:10372495-10372514 | Msa0489710:three_prime_UTR | 15.0% |
| !!! | TATTGACATGTTTTAAGTTT+TGG | - | chr3_4:10365422-10365441 | None:intergenic | 20.0% |
| !! | AATAGTACTAAGAAAATTGT+GGG | + | chr3_4:10365438-10365457 | Msa0489710:CDS | 20.0% |
| !! | ATCAGAAAGAGATATAATAA+AGG | - | chr3_4:10365783-10365802 | None:intergenic | 20.0% |
| !! | ATAATATAGTCTAGATACAT+CGG | - | chr3_4:10365868-10365887 | None:intergenic | 20.0% |
| !!! | ATTGTATGGATTAGAAATTT+TGG | + | chr3_4:10366216-10366235 | Msa0489710:intron | 20.0% |
| !!! | TTTTTGTTCGAGATAATTTT+AGG | + | chr3_4:10366283-10366302 | Msa0489710:intron | 20.0% |
| !! | TACAAATTGAAGAACTAAAT+TGG | - | chr3_4:10366454-10366473 | None:intergenic | 20.0% |
| !!! | AATTTAGTTCTTCAATTTGT+AGG | + | chr3_4:10366453-10366472 | Msa0489710:intron | 20.0% |
| !!! | ATTTAGTTCTTCAATTTGTA+GGG | + | chr3_4:10366454-10366473 | Msa0489710:intron | 20.0% |
| !!! | AATTTGTTGAAGACAATTTT+AGG | + | chr3_4:10366750-10366769 | Msa0489710:intron | 20.0% |
| !! | ACTAAATTTACTTATCCAAA+AGG | + | chr3_4:10366773-10366792 | Msa0489710:intron | 20.0% |
| !!! | TTTTAGTTCATAAAGTTGTA+GGG | - | chr3_4:10366874-10366893 | None:intergenic | 20.0% |
| !!! | TGTAAATGATTGTTATTTGA+TGG | + | chr3_4:10366943-10366962 | Msa0489710:intron | 20.0% |
| !!! | GTAAATGATTGTTATTTGAT+GGG | + | chr3_4:10366944-10366963 | Msa0489710:intron | 20.0% |
| !!! | TAATTTCAGCTACAATTTTA+TGG | + | chr3_4:10367214-10367233 | Msa0489710:intron | 20.0% |
| !!! | TACAATTTTATGGACTAAAA+TGG | + | chr3_4:10367224-10367243 | Msa0489710:intron | 20.0% |
| !!! | AACATTTTTGGTAATGATTT+TGG | + | chr3_4:10367695-10367714 | Msa0489710:intron | 20.0% |
| !!! | ATGTTTTGTTAGAATGAAAA+TGG | + | chr3_4:10367742-10367761 | Msa0489710:intron | 20.0% |
| !!! | TGTTTTAATTAGGACATTTA+TGG | - | chr3_4:10368141-10368160 | None:intergenic | 20.0% |
| !!! | TTTTTGCAACTATTTATAAC+AGG | + | chr3_4:10368305-10368324 | Msa0489710:CDS | 20.0% |
| !!! | AGTGTTTTTAGAAAATTAAC+GGG | - | chr3_4:10368504-10368523 | None:intergenic | 20.0% |
| !!! | TTCATTTTAAATTGCTAACA+TGG | + | chr3_4:10368551-10368570 | Msa0489710:intron | 20.0% |
| !! | AAAATGAAAACAAAAACATG+AGG | + | chr3_4:10368780-10368799 | Msa0489710:intron | 20.0% |
| !!! | AGCCCTAATATTTTTAAATA+AGG | + | chr3_4:10368811-10368830 | Msa0489710:intron | 20.0% |
| !!! | GCCCTAATATTTTTAAATAA+GGG | + | chr3_4:10368812-10368831 | Msa0489710:intron | 20.0% |
| !! | ATTCATTACGGATTTATTAT+AGG | + | chr3_4:10368885-10368904 | Msa0489710:intron | 20.0% |
| !! | AGAACAACATAAAAATGATT+AGG | - | chr3_4:10369087-10369106 | None:intergenic | 20.0% |
| !! | TTGCTTGATGTTTAATATAT+TGG | + | chr3_4:10369106-10369125 | Msa0489710:intron | 20.0% |
| !!! | TAATATATTGGTTGATTTCT+CGG | + | chr3_4:10369118-10369137 | Msa0489710:intron | 20.0% |
| !! | TGATTTACAAAGTTATTGTA+TGG | + | chr3_4:10369221-10369240 | Msa0489710:intron | 20.0% |
| !! | TTATTAACCAAAATTACATG+CGG | - | chr3_4:10369310-10369329 | None:intergenic | 20.0% |
| !! | AATGCTTAAATAAAAGGATA+TGG | - | chr3_4:10369607-10369626 | None:intergenic | 20.0% |
| !! | GTCATAAATGCTTAAATAAA+AGG | - | chr3_4:10369613-10369632 | None:intergenic | 20.0% |
| !! | TATGCAACTAAAGATAAATA+TGG | + | chr3_4:10369649-10369668 | Msa0489710:intron | 20.0% |
| !! | TTACCATTAAAAACTGTAAA+AGG | - | chr3_4:10370429-10370448 | None:intergenic | 20.0% |
| !! | TGTACAATGATTGAAAATTT+AGG | - | chr3_4:10370539-10370558 | None:intergenic | 20.0% |
| !! | AGTAGTTAATAGAATGAAAA+AGG | - | chr3_4:10371017-10371036 | None:intergenic | 20.0% |
| !! | GAAAATATAAAAACTAACAG+AGG | - | chr3_4:10371141-10371160 | None:intergenic | 20.0% |
| !! | TAAAAAATTCAGTTATTGCA+AGG | - | chr3_4:10371530-10371549 | None:intergenic | 20.0% |
| !! | TAATCTTTCTGTACAAAATA+TGG | - | chr3_4:10371744-10371763 | None:intergenic | 20.0% |
| !!! | ACCTTGATGATAAATATTTT+AGG | + | chr3_4:10371889-10371908 | Msa0489710:intron | 20.0% |
| !! | ACCTAAAATATTTATCATCA+AGG | - | chr3_4:10371893-10371912 | None:intergenic | 20.0% |
| !!! | TAAATATTTTAGGTTCTCTT+TGG | + | chr3_4:10371899-10371918 | Msa0489710:intron | 20.0% |
| !! | AATATGATTGAAAATATCCA+AGG | + | chr3_4:10372608-10372627 | Msa0489710:three_prime_UTR | 20.0% |
| !!! | CATGTTTTAAGTTTTGGTTT+TGG | - | chr3_4:10365416-10365435 | None:intergenic | 25.0% |
| ! | CAATAGTACTAAGAAAATTG+TGG | + | chr3_4:10365437-10365456 | Msa0489710:CDS | 25.0% |
| !!! | GTTCAAATTTTGAGACTTTT+GGG | + | chr3_4:10365574-10365593 | Msa0489710:CDS | 25.0% |
| ! | ATCTCTTTCTGATAATTTGA+TGG | + | chr3_4:10365790-10365809 | Msa0489710:intron | 25.0% |
| ! | TCTCTTTCTGATAATTTGAT+GGG | + | chr3_4:10365791-10365810 | Msa0489710:intron | 25.0% |
| !!! | TGTGATTTTTTGATGATTTG+TGG | + | chr3_4:10365960-10365979 | Msa0489710:intron | 25.0% |
| ! | GTTTAATCCTTCAAATTGTA+TGG | + | chr3_4:10366202-10366221 | Msa0489710:intron | 25.0% |
| ! | TTCTAATCCATACAATTTGA+AGG | - | chr3_4:10366212-10366231 | None:intergenic | 25.0% |
| !!! | TTTTTAGCTTTGATTGTTTG+TGG | + | chr3_4:10366377-10366396 | Msa0489710:intron | 25.0% |
| !!! | ATTGTTGTTTTGTACTTTGA+TGG | + | chr3_4:10366408-10366427 | Msa0489710:intron | 25.0% |
| !!! | TTGTTGTTTTGTACTTTGAT+GGG | + | chr3_4:10366409-10366428 | Msa0489710:intron | 25.0% |
| ! | TACAATTTAAAGGACTAAAC+TGG | - | chr3_4:10366657-10366676 | None:intergenic | 25.0% |
| ! | AGTTTAGTCCTTTAAATTGT+AGG | + | chr3_4:10366656-10366675 | Msa0489710:intron | 25.0% |
| ! | GTTTAGTCCTTTAAATTGTA+GGG | + | chr3_4:10366657-10366676 | Msa0489710:intron | 25.0% |
| !! | TTATATCACACTATTCCTTT+TGG | - | chr3_4:10366791-10366810 | None:intergenic | 25.0% |
| !! | TTTAGTTCATAAAGTTGTAG+GGG | - | chr3_4:10366873-10366892 | None:intergenic | 25.0% |
| !!! | GTTTTAGTTCATAAAGTTGT+AGG | - | chr3_4:10366875-10366894 | None:intergenic | 25.0% |
| !!! | ATTGTTTTTTGTGCTTTGAT+GGG | + | chr3_4:10366981-10367000 | Msa0489710:intron | 25.0% |
| ! | ACTTAATTGTCTAATCCAAA+AGG | + | chr3_4:10367140-10367159 | Msa0489710:intron | 25.0% |
| ! | CTTAATTGTCTAATCCAAAA+GGG | + | chr3_4:10367141-10367160 | Msa0489710:intron | 25.0% |
| ! | TTGCATAGTTTAAATATAGG+TGG | - | chr3_4:10367254-10367273 | None:intergenic | 25.0% |
| ! | CACTTGCATAGTTTAAATAT+AGG | - | chr3_4:10367257-10367276 | None:intergenic | 25.0% |
| ! | TTTAAACTATGCAAGTGAAT+TGG | + | chr3_4:10367260-10367279 | Msa0489710:intron | 25.0% |
| ! | CTGTCATTCAAACATATTTA+TGG | + | chr3_4:10367484-10367503 | Msa0489710:CDS | 25.0% |
| !!! | TTTTTGGTAATGATTTTGGT+TGG | + | chr3_4:10367699-10367718 | Msa0489710:intron | 25.0% |
| ! | TTTGTTAGAATGAAAATGGT+TGG | + | chr3_4:10367746-10367765 | Msa0489710:intron | 25.0% |
| !!! | CTGAAGTTTAAGTTTTTCAT+CGG | - | chr3_4:10367845-10367864 | None:intergenic | 25.0% |
| ! | AGAAACTGAAAAAACTGAAA+AGG | - | chr3_4:10367896-10367915 | None:intergenic | 25.0% |
| !!! | TTATATTTTAATTAGGAGGG+AGG | - | chr3_4:10368172-10368191 | None:intergenic | 25.0% |
| !! | TTTCCAAAACTTGATTGTTT+TGG | - | chr3_4:10368446-10368465 | None:intergenic | 25.0% |
| !!! | AAACAATCAAGTTTTGGAAA+AGG | + | chr3_4:10368446-10368465 | Msa0489710:intron | 25.0% |
| !! | ATTTTTAAATAAGGGAAGCT+CGG | + | chr3_4:10368820-10368839 | Msa0489710:intron | 25.0% |
| ! | ATTGGTATAGAAACAATAAC+CGG | - | chr3_4:10369172-10369191 | None:intergenic | 25.0% |
| ! | AATGTAACTTACCATCATAA+TGG | - | chr3_4:10369198-10369217 | None:intergenic | 25.0% |
| !!! | TGGTGTTATAATCATTAAAC+AGG | - | chr3_4:10369587-10369606 | None:intergenic | 25.0% |
| ! | TTTAGTTGCATATAAATCCT+TGG | - | chr3_4:10369641-10369660 | None:intergenic | 25.0% |
| ! | CAGGTAACAATTTGTAAATA+TGG | - | chr3_4:10369904-10369923 | None:intergenic | 25.0% |
| !!! | TGCATGTTTTTATTGCAAAT+TGG | + | chr3_4:10369942-10369961 | Msa0489710:intron | 25.0% |
| ! | TTAAAAACTGTAAAAGGACA+AGG | - | chr3_4:10370423-10370442 | None:intergenic | 25.0% |
| !! | TGTCCTTTTACAGTTTTTAA+TGG | + | chr3_4:10370423-10370442 | Msa0489710:intron | 25.0% |
| ! | ATTATTGATGTTTCAGATCT+CGG | - | chr3_4:10370601-10370620 | None:intergenic | 25.0% |
| !! | GATCTGAAACATCAATAATA+AGG | + | chr3_4:10370602-10370621 | Msa0489710:intron | 25.0% |
| ! | ACAGATTGACCATAATATTA+AGG | + | chr3_4:10370867-10370886 | Msa0489710:intron | 25.0% |
| !! | TTTTGATATCTTAACCTAAC+TGG | + | chr3_4:10370911-10370930 | Msa0489710:intron | 25.0% |
| ! | AGTTAATAGAATGAAAAAGG+AGG | - | chr3_4:10371014-10371033 | None:intergenic | 25.0% |
| ! | GTTATGAAAATCTTTGTCTA+TGG | + | chr3_4:10371077-10371096 | Msa0489710:intron | 25.0% |
| ! | AATCTTTGTCTATGGTTAAT+TGG | + | chr3_4:10371085-10371104 | Msa0489710:intron | 25.0% |
| !!! | TACAAATCTGTAGTTTTATC+AGG | + | chr3_4:10371285-10371304 | Msa0489710:CDS | 25.0% |
| ! | TAAATAATAACTTCTCGCAT+AGG | + | chr3_4:10371548-10371567 | Msa0489710:intron | 25.0% |
| ! | CGTAAACACGTAAATTTATA+AGG | - | chr3_4:10371589-10371608 | None:intergenic | 25.0% |
| ! | TATTTATCATCAAGGTAGTA+GGG | - | chr3_4:10371885-10371904 | None:intergenic | 25.0% |
| ! | ATATTTATCATCAAGGTAGT+AGG | - | chr3_4:10371886-10371905 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCATAAGTTATTC+TGG | + | chr3_4:10372041-10372060 | Msa0489710:intron | 25.0% |
| ! | AACAAAATAATCACCATATG+AGG | - | chr3_4:10372378-10372397 | None:intergenic | 25.0% |
| ! | ACAATCTCAAAAGTGATATT+TGG | - | chr3_4:10372521-10372540 | None:intergenic | 25.0% |
| GAAGAATAGTTGGTTAAGTT+TGG | - | chr3_4:10365342-10365361 | None:intergenic | 30.0% | |
| !!! | GTTTTGGTTTTGGTATGATT+TGG | - | chr3_4:10365406-10365425 | None:intergenic | 30.0% |
| !!! | GGTTCAAATTTTGAGACTTT+TGG | + | chr3_4:10365573-10365592 | Msa0489710:CDS | 30.0% |
| CTGTATCTGATAATCGTTTA+TGG | + | chr3_4:10365647-10365666 | Msa0489710:CDS | 30.0% | |
| ! | GCTGAAACTAATTTGATTTC+TGG | + | chr3_4:10365724-10365743 | Msa0489710:CDS | 30.0% |
| ! | TTTAGAATACTAACGGAAGA+GGG | - | chr3_4:10365753-10365772 | None:intergenic | 30.0% |
| ! | ATTTAGAATACTAACGGAAG+AGG | - | chr3_4:10365754-10365773 | None:intergenic | 30.0% |
| TGTATGTGTATGATTGTCAT+TGG | + | chr3_4:10365815-10365834 | Msa0489710:intron | 30.0% | |
| TTGATTATAATAGTGACCTG+AGG | + | chr3_4:10365932-10365951 | Msa0489710:intron | 30.0% | |
| TGATTATAATAGTGACCTGA+GGG | + | chr3_4:10365933-10365952 | Msa0489710:intron | 30.0% | |
| !! | GTGATTTGTTGTGAATTTGA+TGG | + | chr3_4:10366131-10366150 | Msa0489710:intron | 30.0% |
| ! | TTTTGTGTTTTGTGCTTTGA+TGG | + | chr3_4:10366169-10366188 | Msa0489710:intron | 30.0% |
| ! | TTTGTGTTTTGTGCTTTGAT+GGG | + | chr3_4:10366170-10366189 | Msa0489710:intron | 30.0% |
| ATTAGATTGACTGATCCAAA+AGG | + | chr3_4:10366306-10366325 | Msa0489710:intron | 30.0% | |
| ! | ATTTGCAAGATTTGTCCTTT+TGG | - | chr3_4:10366324-10366343 | None:intergenic | 30.0% |
| AATCTTGCAAATTTGTGCTT+TGG | + | chr3_4:10366332-10366351 | Msa0489710:intron | 30.0% | |
| !! | TGATTTGTTGCGAATTTGAT+GGG | + | chr3_4:10366581-10366600 | Msa0489710:intron | 30.0% |
| ! | ATTTTTGTGTGTGCTTTGAT+GGG | + | chr3_4:10366615-10366634 | Msa0489710:intron | 30.0% |
| AATTTAAAGGACTAAACTGG+TGG | - | chr3_4:10366654-10366673 | None:intergenic | 30.0% | |
| !!! | GATTGTTTTTTGTGCTTTGA+TGG | + | chr3_4:10366980-10366999 | Msa0489710:intron | 30.0% |
| !! | GTTTTGAATGAAAAATGCGA+TGG | - | chr3_4:10367111-10367130 | None:intergenic | 30.0% |
| !!! | TTTTTAGCTTTGATGGGTTA+TGG | + | chr3_4:10367298-10367317 | Msa0489710:intron | 30.0% |
| AATATGTTTGAATGACAGCT+GGG | - | chr3_4:10367482-10367501 | None:intergenic | 30.0% | |
| AAATATGTTTGAATGACAGC+TGG | - | chr3_4:10367483-10367502 | None:intergenic | 30.0% | |
| AGTAACAGAACACAAGATAT+TGG | - | chr3_4:10367570-10367589 | None:intergenic | 30.0% | |
| !!! | GTTTTATCTGTTTTTGCTCA+AGG | + | chr3_4:10367612-10367631 | Msa0489710:intron | 30.0% |
| AATGAGAGTAAGGTAAAATG+AGG | - | chr3_4:10367812-10367831 | None:intergenic | 30.0% | |
| AAAACACTTCTGCAGATAAT+AGG | + | chr3_4:10367865-10367884 | Msa0489710:intron | 30.0% | |
| AGGACATTTATGGTTATATG+AGG | - | chr3_4:10368131-10368150 | None:intergenic | 30.0% | |
| ! | TGTCATTTCTTAAACACTCA+CGG | + | chr3_4:10368334-10368353 | Msa0489710:intron | 30.0% |
| AGATCTATGTAGACATGTAT+AGG | + | chr3_4:10368403-10368422 | Msa0489710:intron | 30.0% | |
| ! | TCACCAAAACAATCAAGTTT+TGG | + | chr3_4:10368440-10368459 | Msa0489710:intron | 30.0% |
| ! | GAGTGCATTTTCAAAAACAA+TGG | + | chr3_4:10368635-10368654 | Msa0489710:intron | 30.0% |
| ATTGTAAAAGAAAACGGTGA+AGG | + | chr3_4:10368715-10368734 | Msa0489710:intron | 30.0% | |
| AGAAATGTTCATGCTTAACA+TGG | + | chr3_4:10369032-10369051 | Msa0489710:intron | 30.0% | |
| TTCATGCTTAACATGGAAAA+AGG | + | chr3_4:10369039-10369058 | Msa0489710:intron | 30.0% | |
| !!! | ACAATAACCGGTTGATTTTT+TGG | - | chr3_4:10369160-10369179 | None:intergenic | 30.0% |
| ATACCAATATGCCATTATGA+TGG | + | chr3_4:10369184-10369203 | Msa0489710:CDS | 30.0% | |
| TTACCATCATAATGGCATAT+TGG | - | chr3_4:10369190-10369209 | None:intergenic | 30.0% | |
| CAACCAGGTAATATATCTTA+AGG | + | chr3_4:10369479-10369498 | Msa0489710:intron | 30.0% | |
| ! | AGGTCAAATTGATGACAATT+TGG | + | chr3_4:10369715-10369734 | Msa0489710:intron | 30.0% |
| !!! | CCTTTTTGTTTTGTCGTATT+CGG | - | chr3_4:10369849-10369868 | None:intergenic | 30.0% |
| TTACAAATTGTTACCTGAAG+AGG | + | chr3_4:10369907-10369926 | Msa0489710:intron | 30.0% | |
| GCAAATTGGAATCAAATATG+CGG | + | chr3_4:10369956-10369975 | Msa0489710:intron | 30.0% | |
| ! | TCTGGAATAGCTGTTAATAT+AGG | + | chr3_4:10370070-10370089 | Msa0489710:CDS | 30.0% |
| CAAGAGAAAAGAAAACAGAA+GGG | - | chr3_4:10370129-10370148 | None:intergenic | 30.0% | |
| AACCACAGTATTGCATTATT+AGG | - | chr3_4:10370268-10370287 | None:intergenic | 30.0% | |
| TTATTTGTTTCCACCTTTGT+TGG | + | chr3_4:10370379-10370398 | Msa0489710:intron | 30.0% | |
| TAATGGTAAAGTAATGCGTA+AGG | + | chr3_4:10370440-10370459 | Msa0489710:CDS | 30.0% | |
| GAAAGTTACAGGATTTCTTA+AGG | + | chr3_4:10370494-10370513 | Msa0489710:CDS | 30.0% | |
| TGTTTACACTTTCAAAAGAG+CGG | + | chr3_4:10370768-10370787 | Msa0489710:CDS | 30.0% | |
| ! | GTTTTGTATTTCTTGCAATG+CGG | + | chr3_4:10370839-10370858 | Msa0489710:intron | 30.0% |
| TGTCAGATTAGTAAATGCTT+AGG | + | chr3_4:10371055-10371074 | Msa0489710:intron | 30.0% | |
| TTTGTCTATGGTTAATTGGA+CGG | + | chr3_4:10371089-10371108 | Msa0489710:intron | 30.0% | |
| TAAGCTTATGTTTCACTTCT+TGG | + | chr3_4:10371175-10371194 | Msa0489710:intron | 30.0% | |
| TATGTTTCACTTCTTGGTAT+AGG | + | chr3_4:10371181-10371200 | Msa0489710:intron | 30.0% | |
| !!! | AAATCTGTAGTTTTATCAGG+AGG | + | chr3_4:10371288-10371307 | Msa0489710:CDS | 30.0% |
| TCAAGAAACACGTATAGAAA+AGG | + | chr3_4:10371490-10371509 | Msa0489710:intron | 30.0% | |
| !! | AGTTAAATGAGAGCTTTGAA+AGG | + | chr3_4:10371613-10371632 | Msa0489710:intron | 30.0% |
| AAAAATCGTTGCAAGCTTAT+AGG | - | chr3_4:10371679-10371698 | None:intergenic | 30.0% | |
| ! | TATAAGCTTGCAACGATTTT+TGG | + | chr3_4:10371678-10371697 | Msa0489710:intron | 30.0% |
| TTGTACAGAAAGATTAGAGA+AGG | + | chr3_4:10371748-10371767 | Msa0489710:intron | 30.0% | |
| CTTATTTGCGTTTACTTACA+TGG | - | chr3_4:10372102-10372121 | None:intergenic | 30.0% | |
| CAGAATAATTTACACTATCG+AGG | - | chr3_4:10372414-10372433 | None:intergenic | 30.0% | |
| ! | GATTTGAAGTACTCGAAAAA+TGG | + | chr3_4:10372630-10372649 | Msa0489710:three_prime_UTR | 30.0% |
| GAAAGAGAGTGAAGAATAGT+TGG | - | chr3_4:10365352-10365371 | None:intergenic | 35.0% | |
| TGTTGTTCATGTGAAGATGT+TGG | - | chr3_4:10365484-10365503 | None:intergenic | 35.0% | |
| ATTTGAACCAAGATGTCACT+TGG | - | chr3_4:10365562-10365581 | None:intergenic | 35.0% | |
| ! | CTCAGTTTTGCAACTTCTTT+GGG | - | chr3_4:10365601-10365620 | None:intergenic | 35.0% |
| ! | ACTCAGTTTTGCAACTTCTT+TGG | - | chr3_4:10365602-10365621 | None:intergenic | 35.0% |
| TCATCAATCTGATCCATCTT+GGG | + | chr3_4:10365687-10365706 | Msa0489710:CDS | 35.0% | |
| AAAAACACAGAATCCCAAGA+TGG | - | chr3_4:10365703-10365722 | None:intergenic | 35.0% | |
| ATTGCAAATTCGTGCTTTGA+TGG | + | chr3_4:10366531-10366550 | Msa0489710:intron | 35.0% | |
| !! | GTGATTTGTTGCGAATTTGA+TGG | + | chr3_4:10366580-10366599 | Msa0489710:intron | 35.0% |
| AAGCACACACAAAAATCACT+TGG | - | chr3_4:10366611-10366630 | None:intergenic | 35.0% | |
| ! | GATTTTTGTGTGTGCTTTGA+TGG | + | chr3_4:10366614-10366633 | Msa0489710:intron | 35.0% |
| GACTGATCCCTACAATTTAA+AGG | - | chr3_4:10366667-10366686 | None:intergenic | 35.0% | |
| AGATACCGTTAATTTCACTG+TGG | - | chr3_4:10366695-10366714 | None:intergenic | 35.0% | |
| !! | CAACTGTGCAAGTATTTTGA+TGG | + | chr3_4:10366913-10366932 | Msa0489710:intron | 35.0% |
| !! | GATTGTTATTTGATGGGTTG+TGG | + | chr3_4:10366950-10366969 | Msa0489710:intron | 35.0% |
| TACAATTGGAAGGACTAAAC+TGG | - | chr3_4:10367023-10367042 | None:intergenic | 35.0% | |
| AGTTTAGTCCTTCCAATTGT+AGG | + | chr3_4:10367022-10367041 | Msa0489710:intron | 35.0% | |
| GTTTAGTCCTTCCAATTGTA+GGG | + | chr3_4:10367023-10367042 | Msa0489710:intron | 35.0% | |
| AGATAACAGATCCCTACAAT+TGG | - | chr3_4:10367037-10367056 | None:intergenic | 35.0% | |
| ATTGTAGGGATCTGTTATCT+TGG | + | chr3_4:10367037-10367056 | Msa0489710:intron | 35.0% | |
| ! | CTTTATTGCATTAGCCCTTT+TGG | - | chr3_4:10367158-10367177 | None:intergenic | 35.0% |
| CAAAAGGGCTAATGCAATAA+AGG | + | chr3_4:10367156-10367175 | Msa0489710:intron | 35.0% | |
| !!! | GTGATTGCTATTTTGTGCTT+TGG | + | chr3_4:10367326-10367345 | Msa0489710:intron | 35.0% |
| AAAACACAACACCAATCACT+TGG | - | chr3_4:10367377-10367396 | None:intergenic | 35.0% | |
| !!! | TGATTGGTGTTGTGTTTTGA+TGG | + | chr3_4:10367379-10367398 | Msa0489710:intron | 35.0% |
| !!! | GATTGGTGTTGTGTTTTGAT+GGG | + | chr3_4:10367380-10367399 | Msa0489710:intron | 35.0% |
| ATATGTTTGAATGACAGCTG+GGG | - | chr3_4:10367481-10367500 | None:intergenic | 35.0% | |
| ATCTTGTGTTCTGTTACTGA+TGG | + | chr3_4:10367572-10367591 | Msa0489710:intron | 35.0% | |
| !!! | TTATCTGTTTTTGCTCAAGG+CGG | + | chr3_4:10367615-10367634 | Msa0489710:intron | 35.0% |
| !! | TTGGAACTAGCTCTAAACAA+TGG | + | chr3_4:10367718-10367737 | Msa0489710:intron | 35.0% |
| TCGAAGTCAAAATGAGAGTA+AGG | - | chr3_4:10367822-10367841 | None:intergenic | 35.0% | |
| TGCAACTTTGTGATAGAAAC+TGG | + | chr3_4:10367928-10367947 | Msa0489710:intron | 35.0% | |
| CCAAGACTCTCAAATTTCTT+GGG | - | chr3_4:10367992-10368011 | None:intergenic | 35.0% | |
| TCCAAGACTCTCAAATTTCT+TGG | - | chr3_4:10367993-10368012 | None:intergenic | 35.0% | |
| CAACTCTTGAACATTTGGAA+GGG | - | chr3_4:10368021-10368040 | None:intergenic | 35.0% | |
| CTTCCAAATGTTCAAGAGTT+GGG | + | chr3_4:10368020-10368039 | Msa0489710:intron | 35.0% | |
| CGGTTAATTGGTAAAGGATT+GGG | - | chr3_4:10368051-10368070 | None:intergenic | 35.0% | |
| TCGGTTAATTGGTAAAGGAT+TGG | - | chr3_4:10368052-10368071 | None:intergenic | 35.0% | |
| AAGTTATGAGACAAGGGAAA+GGG | - | chr3_4:10368080-10368099 | None:intergenic | 35.0% | |
| ATAGGGAAGTTATGAGACAA+GGG | - | chr3_4:10368086-10368105 | None:intergenic | 35.0% | |
| AATAGGGAAGTTATGAGACA+AGG | - | chr3_4:10368087-10368106 | None:intergenic | 35.0% | |
| !! | CGGTTCTGAGTATTGAAATA+AGG | - | chr3_4:10368208-10368227 | None:intergenic | 35.0% |
| CAAATTCCTGCACATCAAAA+AGG | - | chr3_4:10368246-10368265 | None:intergenic | 35.0% | |
| ! | CTTTTTGATGTGCAGGAATT+TGG | + | chr3_4:10368244-10368263 | Msa0489710:intron | 35.0% |
| CATTTGTGATAGAGAGAAGA+TGG | + | chr3_4:10368597-10368616 | Msa0489710:intron | 35.0% | |
| GAAAACGGTGAAGGAAATAT+TGG | + | chr3_4:10368724-10368743 | Msa0489710:intron | 35.0% | |
| GGGAAGGTTTAGATTCATTA+CGG | + | chr3_4:10368873-10368892 | Msa0489710:intron | 35.0% | |
| GTTTACCTTCCATTTGTAAG+AGG | + | chr3_4:10368910-10368929 | Msa0489710:intron | 35.0% | |
| TGAAATCAGCCTCTTACAAA+TGG | - | chr3_4:10368922-10368941 | None:intergenic | 35.0% | |
| AATTGTCACCATGTGCTAAA+AGG | - | chr3_4:10368961-10368980 | None:intergenic | 35.0% | |
| TAGTATCAGATGAAGAGTCT+TGG | - | chr3_4:10368996-10369015 | None:intergenic | 35.0% | |
| GGTGAAACCAAAAAATCAAC+CGG | + | chr3_4:10369150-10369169 | Msa0489710:CDS | 35.0% | |
| CTGTTATATGTTCATCACCA+TGG | - | chr3_4:10369256-10369275 | None:intergenic | 35.0% | |
| ! | TCATCTTCCGCATGTAATTT+TGG | + | chr3_4:10369300-10369319 | Msa0489710:intron | 35.0% |
| ! | TTGTTGCTTATATGATTCCC+TGG | + | chr3_4:10369339-10369358 | Msa0489710:intron | 35.0% |
| ! | CTGATTCAGTATCTGGAATT+AGG | - | chr3_4:10369380-10369399 | None:intergenic | 35.0% |
| CCACCTTAAGATATATTACC+TGG | - | chr3_4:10369485-10369504 | None:intergenic | 35.0% | |
| CCAGGTAATATATCTTAAGG+TGG | + | chr3_4:10369482-10369501 | Msa0489710:intron | 35.0% | |
| ! | GTTACCTATTTACTGACTAC+TGG | + | chr3_4:10369529-10369548 | Msa0489710:intron | 35.0% |
| ATAGCCAGTAGTCAGTAAAT+AGG | - | chr3_4:10369536-10369555 | None:intergenic | 35.0% | |
| AGGTAAGTAAAGTCAGACTA+AGG | - | chr3_4:10369785-10369804 | None:intergenic | 35.0% | |
| CCGAATACGACAAAACAAAA+AGG | + | chr3_4:10369846-10369865 | Msa0489710:intron | 35.0% | |
| GCAAGAGAAAAGAAAACAGA+AGG | - | chr3_4:10370130-10370149 | None:intergenic | 35.0% | |
| CTCAATATGTTGTCTAAGTG+TGG | + | chr3_4:10370225-10370244 | Msa0489710:intron | 35.0% | |
| TACATTTACACCACCAACAA+AGG | - | chr3_4:10370395-10370414 | None:intergenic | 35.0% | |
| AGTTACAGGATTTCTTAAGG+AGG | + | chr3_4:10370497-10370516 | Msa0489710:CDS | 35.0% | |
| GACCATAATATTAAGGCAAG+CGG | + | chr3_4:10370874-10370893 | Msa0489710:intron | 35.0% | |
| ATCCGCTTGCCTTAATATTA+TGG | - | chr3_4:10370879-10370898 | None:intergenic | 35.0% | |
| AGCATTTACTAATCTGACAG+AGG | - | chr3_4:10371054-10371073 | None:intergenic | 35.0% | |
| ATGGTTAATTGGACGGTATA+AGG | + | chr3_4:10371096-10371115 | Msa0489710:intron | 35.0% | |
| ! | ACTATAGCACTGAAAACTCT+TGG | + | chr3_4:10371413-10371432 | Msa0489710:intron | 35.0% |
| ! | TTCCATTTCACGAGTCTTTT+TGG | + | chr3_4:10371458-10371477 | Msa0489710:intron | 35.0% |
| ATCCAAAAAGACTCGTGAAA+TGG | - | chr3_4:10371463-10371482 | None:intergenic | 35.0% | |
| ! | TTTTGGCAAGTGAAGAAACT+TGG | + | chr3_4:10371695-10371714 | Msa0489710:intron | 35.0% |
| ! | TGGCCTAATTCTACTACTTT+TGG | + | chr3_4:10371715-10371734 | Msa0489710:intron | 35.0% |
| !! | GGCCTAATTCTACTACTTTT+GGG | + | chr3_4:10371716-10371735 | Msa0489710:intron | 35.0% |
| !! | GCCTAATTCTACTACTTTTG+GGG | + | chr3_4:10371717-10371736 | Msa0489710:intron | 35.0% |
| ACCCCAAAAGTAGTAGAATT+AGG | - | chr3_4:10371721-10371740 | None:intergenic | 35.0% | |
| CTAATTCCATTGGACATGTA+TGG | - | chr3_4:10371794-10371813 | None:intergenic | 35.0% | |
| AGGTATGACTCTAATTCCAT+TGG | - | chr3_4:10371804-10371823 | None:intergenic | 35.0% | |
| GCAAATAAGTCAACCAAAAC+AGG | + | chr3_4:10372113-10372132 | Msa0489710:intron | 35.0% | |
| !! | TCTCACTAGAGTTTCTAGTA+AGG | + | chr3_4:10372262-10372281 | Msa0489710:intron | 35.0% |
| ! | TTTCGAGTACTTCAAATCCT+TGG | - | chr3_4:10372628-10372647 | None:intergenic | 35.0% |
| TTTGGCACATGATGAAAACG+CGG | - | chr3_4:10365324-10365343 | None:intergenic | 40.0% | |
| AATTCACCCATATCACCACA+CGG | - | chr3_4:10365529-10365548 | None:intergenic | 40.0% | |
| TCAACTACCAAGTGACATCT+TGG | + | chr3_4:10365552-10365571 | Msa0489710:CDS | 40.0% | |
| GATCAGATTGATGAGTCTGA+AGG | - | chr3_4:10365681-10365700 | None:intergenic | 40.0% | |
| CTCATCAATCTGATCCATCT+TGG | + | chr3_4:10365686-10365705 | Msa0489710:CDS | 40.0% | |
| AAAAAATCACACACTCCCTC+AGG | - | chr3_4:10365951-10365970 | None:intergenic | 40.0% | |
| CGTTAATTTCACTGTGGAAG+CGG | - | chr3_4:10366689-10366708 | None:intergenic | 40.0% | |
| CGCTTCCACAGTGAAATTAA+CGG | + | chr3_4:10366687-10366706 | Msa0489710:intron | 40.0% | |
| TTGCACAGTTGCACGATAAT+TGG | - | chr3_4:10366904-10366923 | None:intergenic | 40.0% | |
| AACAGATCCCTACAATTGGA+AGG | - | chr3_4:10367033-10367052 | None:intergenic | 40.0% | |
| GTTGTAGTTGTCCAAGTGAT+TGG | + | chr3_4:10367363-10367382 | Msa0489710:intron | 40.0% | |
| ! | TTGATGGGTCTAGAGATGAT+TGG | + | chr3_4:10367395-10367414 | Msa0489710:intron | 40.0% |
| TATTTATGGTCAGAGAGCTC+AGG | + | chr3_4:10367498-10367517 | Msa0489710:CDS | 40.0% | |
| CCATCAATGATAATAGCACC+AGG | - | chr3_4:10367526-10367545 | None:intergenic | 40.0% | |
| !! | CCTGGTGCTATTATCATTGA+TGG | + | chr3_4:10367523-10367542 | Msa0489710:CDS | 40.0% |
| CCAACCAAATTTGCAATAGC+CGG | - | chr3_4:10367643-10367662 | None:intergenic | 40.0% | |
| GAGCAAATATGCTTGTCCAT+CGG | + | chr3_4:10367662-10367681 | Msa0489710:CDS | 40.0% | |
| AGCAAATATGCTTGTCCATC+GGG | + | chr3_4:10367663-10367682 | Msa0489710:CDS | 40.0% | |
| TGGTGAAAATTGACTGTGTC+TGG | + | chr3_4:10367766-10367785 | Msa0489710:intron | 40.0% | |
| TTCTATCACAAAGTTGCAGC+AGG | - | chr3_4:10367926-10367945 | None:intergenic | 40.0% | |
| CCCAAGAAATTTGAGAGTCT+TGG | + | chr3_4:10367989-10368008 | Msa0489710:intron | 40.0% | |
| CCAACTCTTGAACATTTGGA+AGG | - | chr3_4:10368022-10368041 | None:intergenic | 40.0% | |
| CCTTCCAAATGTTCAAGAGT+TGG | + | chr3_4:10368019-10368038 | Msa0489710:intron | 40.0% | |
| AGACCCAACTCTTGAACATT+TGG | - | chr3_4:10368026-10368045 | None:intergenic | 40.0% | |
| ! | GGGATTCGGTTAATTGGTAA+AGG | - | chr3_4:10368057-10368076 | None:intergenic | 40.0% |
| AGTTATGAGACAAGGGAAAG+GGG | - | chr3_4:10368079-10368098 | None:intergenic | 40.0% | |
| GAAGTTATGAGACAAGGGAA+AGG | - | chr3_4:10368081-10368100 | None:intergenic | 40.0% | |
| ATTCCTGCACATCAAAAAGG+AGG | - | chr3_4:10368243-10368262 | None:intergenic | 40.0% | |
| TTGAGTCGCCAATGTATACT+AGG | + | chr3_4:10368272-10368291 | Msa0489710:CDS | 40.0% | |
| TGTCGAAGCCTAGTATACAT+TGG | - | chr3_4:10368283-10368302 | None:intergenic | 40.0% | |
| !! | TTGCACTGAGAGAGTTGATA+CGG | - | chr3_4:10368371-10368390 | None:intergenic | 40.0% |
| !!! | TCAAGTTTTGGAAAAGGCAG+TGG | + | chr3_4:10368452-10368471 | Msa0489710:intron | 40.0% |
| GAGAAGATGGAAGACAAGTT+AGG | + | chr3_4:10368610-10368629 | Msa0489710:intron | 40.0% | |
| ATCAGCCTCTTACAAATGGA+AGG | - | chr3_4:10368918-10368937 | None:intergenic | 40.0% | |
| ! | ATATTGGTTGATTTCTCGGC+AGG | + | chr3_4:10369122-10369141 | Msa0489710:intron | 40.0% |
| ! | TTGTATGGTGATTTGTGCCA+TGG | + | chr3_4:10369236-10369255 | Msa0489710:intron | 40.0% |
| GGCAACAATTTGTAAAGCCA+GGG | - | chr3_4:10369359-10369378 | None:intergenic | 40.0% | |
| AGGCAACAATTTGTAAAGCC+AGG | - | chr3_4:10369360-10369379 | None:intergenic | 40.0% | |
| AGGAACATTCAAGTCGAACA+GGG | - | chr3_4:10369445-10369464 | None:intergenic | 40.0% | |
| TGCATATAAATCCTTGGCAG+AGG | - | chr3_4:10369635-10369654 | None:intergenic | 40.0% | |
| GTCTGACTTTACTTACCTAC+CGG | + | chr3_4:10369787-10369806 | Msa0489710:intron | 40.0% | |
| ! | CTGATAATCTAGAGTTTGGC+CGG | - | chr3_4:10369809-10369828 | None:intergenic | 40.0% |
| ACAATCACATTCACCTCTTC+AGG | - | chr3_4:10369923-10369942 | None:intergenic | 40.0% | |
| TATGCTGCAAAACGAACTTC+TGG | + | chr3_4:10370052-10370071 | Msa0489710:CDS | 40.0% | |
| GTGTGGTACAACGTTGATAT+TGG | + | chr3_4:10370242-10370261 | Msa0489710:intron | 40.0% | |
| GGCCTAATAATGCAATACTG+TGG | + | chr3_4:10370263-10370282 | Msa0489710:intron | 40.0% | |
| TTTGTTTCCACCTTTGTTGG+TGG | + | chr3_4:10370382-10370401 | Msa0489710:intron | 40.0% | |
| ATTTACACCACCAACAAAGG+TGG | - | chr3_4:10370392-10370411 | None:intergenic | 40.0% | |
| AAACTGTAAAAGGACAAGGC+AGG | - | chr3_4:10370419-10370438 | None:intergenic | 40.0% | |
| GGTAAAGTAATGCGTAAGGT+CGG | + | chr3_4:10370444-10370463 | Msa0489710:CDS | 40.0% | |
| ATTGATGTTTCAGATCTCGG+AGG | - | chr3_4:10370598-10370617 | None:intergenic | 40.0% | |
| CAAGCATCATTTCAAGCTAC+AGG | + | chr3_4:10370737-10370756 | Msa0489710:CDS | 40.0% | |
| TCATTTCAAGCTACAGGAGA+TGG | + | chr3_4:10370743-10370762 | Msa0489710:CDS | 40.0% | |
| TTATTCAAGCCACATCTTGC+TGG | + | chr3_4:10370809-10370828 | Msa0489710:CDS | 40.0% | |
| TGCAATCAGTCTATCCAGTT+AGG | - | chr3_4:10370928-10370947 | None:intergenic | 40.0% | |
| AATCTTAGATCCAACGAGCT+TGG | + | chr3_4:10370983-10371002 | Msa0489710:intron | 40.0% | |
| ATTCTCCATACAACGAGCTA+TGG | - | chr3_4:10371229-10371248 | None:intergenic | 40.0% | |
| AAACATTTACCTGCCAAACC+TGG | - | chr3_4:10371327-10371346 | None:intergenic | 40.0% | |
| AGATTAGAGAAGGAACTCCA+TGG | + | chr3_4:10371758-10371777 | Msa0489710:CDS | 40.0% | |
| ATTCCATTGGACATGTATGG+AGG | - | chr3_4:10371791-10371810 | None:intergenic | 40.0% | |
| ! | AAGTAGATCGGTACCTGTTT+TGG | - | chr3_4:10372129-10372148 | None:intergenic | 40.0% |
| TATCCTGCAGCAAAGTAGAT+CGG | - | chr3_4:10372141-10372160 | None:intergenic | 40.0% | |
| TTTAGGGAGGCTGGAATAAT+AGG | + | chr3_4:10372445-10372464 | Msa0489710:three_prime_UTR | 40.0% | |
| TTGGCACATGATGAAAACGC+GGG | - | chr3_4:10365323-10365342 | None:intergenic | 45.0% | |
| ! | GTGCTTTGGTGCAAGTGAAT+TGG | + | chr3_4:10366346-10366365 | Msa0489710:intron | 45.0% |
| AAGGATCTGCAATTCACGGA+CGG | - | chr3_4:10367448-10367467 | None:intergenic | 45.0% | |
| TCCGTGAATTGCAGATCCTT+TGG | + | chr3_4:10367448-10367467 | Msa0489710:CDS | 45.0% | |
| GCCAAAGGATCTGCAATTCA+CGG | - | chr3_4:10367452-10367471 | None:intergenic | 45.0% | |
| GGTTCCGGCTATTGCAAATT+TGG | + | chr3_4:10367636-10367655 | Msa0489710:CDS | 45.0% | |
| CCGGCTATTGCAAATTTGGT+TGG | + | chr3_4:10367640-10367659 | Msa0489710:CDS | 45.0% | |
| GCAAATATGCTTGTCCATCG+GGG | + | chr3_4:10367664-10367683 | Msa0489710:CDS | 45.0% | |
| ! | AAAGGGGGGATTCGGTTAAT+TGG | - | chr3_4:10368063-10368082 | None:intergenic | 45.0% |
| TTATGAGACAAGGGAAAGGG+GGG | - | chr3_4:10368077-10368096 | None:intergenic | 45.0% | |
| GTTATGAGACAAGGGAAAGG+GGG | - | chr3_4:10368078-10368097 | None:intergenic | 45.0% | |
| ! | AAAGGAGGCAGAGTGTTAGA+CGG | - | chr3_4:10368228-10368247 | None:intergenic | 45.0% |
| !! | TGCACTGAGAGAGTTGATAC+GGG | - | chr3_4:10368370-10368389 | None:intergenic | 45.0% |
| TAGAAAACTCCTGCCATGCA+GGG | + | chr3_4:10368846-10368865 | Msa0489710:intron | 45.0% | |
| ACCATGTGCTAAAAGGTCTC+TGG | - | chr3_4:10368954-10368973 | None:intergenic | 45.0% | |
| AAGAGTCTTGGCACAACTGT+TGG | - | chr3_4:10368984-10369003 | None:intergenic | 45.0% | |
| TTACATGCGGAAGATGAGCA+TGG | - | chr3_4:10369297-10369316 | None:intergenic | 45.0% | |
| AAGTTGTTGTCTCGATGCTC+TGG | - | chr3_4:10369403-10369422 | None:intergenic | 45.0% | |
| CAGGAACATTCAAGTCGAAC+AGG | - | chr3_4:10369446-10369465 | None:intergenic | 45.0% | |
| AGCATTTATGACCTCTGCCA+AGG | + | chr3_4:10369621-10369640 | Msa0489710:intron | 45.0% | |
| TCTGTAGTCTTTCACGTTGC+AGG | + | chr3_4:10369695-10369714 | Msa0489710:intron | 45.0% | |
| ! | TAATCTAGAGTTTGGCCGGT+AGG | - | chr3_4:10369805-10369824 | None:intergenic | 45.0% |
| CGGCCAAACTCTAGATTATC+AGG | + | chr3_4:10369807-10369826 | Msa0489710:intron | 45.0% | |
| ! | GGGCCTGATAATCTAGAGTT+TGG | - | chr3_4:10369813-10369832 | None:intergenic | 45.0% |
| ATTATCAGGCCCCTTTCTCT+GGG | + | chr3_4:10369821-10369840 | Msa0489710:intron | 45.0% | |
| TATTCGGTTCCCAGAGAAAG+GGG | - | chr3_4:10369833-10369852 | None:intergenic | 45.0% | |
| GTATTCGGTTCCCAGAGAAA+GGG | - | chr3_4:10369834-10369853 | None:intergenic | 45.0% | |
| ! | AAAACAGAAGGGCGCATACT+TGG | - | chr3_4:10370118-10370137 | None:intergenic | 45.0% |
| ACTTACACTCCAGCAAGATG+TGG | - | chr3_4:10370821-10370840 | None:intergenic | 45.0% | |
| TATGGCCTGGTGTAAACCTA+CGG | - | chr3_4:10371211-10371230 | None:intergenic | 45.0% | |
| ATGGAGAATTGCCATTCTGC+AGG | + | chr3_4:10371240-10371259 | Msa0489710:CDS | 45.0% | |
| GATTACCAGGTGACAACGAT+TGG | + | chr3_4:10371262-10371281 | Msa0489710:CDS | 45.0% | |
| TTGTACCAATCGTTGTCACC+TGG | - | chr3_4:10371270-10371289 | None:intergenic | 45.0% | |
| AACTGCATGTTTGCCAGGTT+TGG | + | chr3_4:10371311-10371330 | Msa0489710:CDS | 45.0% | |
| TGTATGGAGGAAGTAAGCCA+TGG | - | chr3_4:10371778-10371797 | None:intergenic | 45.0% | |
| CTTCCTCCATACATGTCCAA+TGG | + | chr3_4:10371785-10371804 | Msa0489710:CDS | 45.0% | |
| AGAGTCATACCTCCTCCATA+CGG | + | chr3_4:10371812-10371831 | Msa0489710:CDS | 45.0% | |
| !! | CATTGAGTATCGACACCGTA+TGG | - | chr3_4:10371830-10371849 | None:intergenic | 45.0% |
| !! | CATACGGTGTCGATACTCAA+TGG | + | chr3_4:10371828-10371847 | Msa0489710:CDS | 45.0% |
| !! | GGTGTCGATACTCAATGGTT+CGG | + | chr3_4:10371833-10371852 | Msa0489710:CDS | 45.0% |
| ! | TGGTTCGGAGCAAAGATGAT+TGG | + | chr3_4:10371848-10371867 | Msa0489710:CDS | 45.0% |
| GCAGGATACGATGAGTGTAT+CGG | + | chr3_4:10372153-10372172 | Msa0489710:intron | 45.0% | |
| GTACAGTTGAGCACATTTCC+TGG | + | chr3_4:10372304-10372323 | Msa0489710:intron | 45.0% | |
| ! | TGAGCACATTTCCTGGTTCT+TGG | + | chr3_4:10372311-10372330 | Msa0489710:CDS | 45.0% |
| ! | ATTTCCTGGTTCTTGGTGTG+TGG | + | chr3_4:10372318-10372337 | Msa0489710:CDS | 45.0% |
| ! | TTTTCCACACACCAAGAACC+AGG | - | chr3_4:10372325-10372344 | None:intergenic | 45.0% |
| ATTCTGCACCCTCCAACTTT+AGG | + | chr3_4:10372428-10372447 | Msa0489710:three_prime_UTR | 45.0% | |
| TTCTGCACCCTCCAACTTTA+GGG | + | chr3_4:10372429-10372448 | Msa0489710:three_prime_UTR | 45.0% | |
| TATTCCAGCCTCCCTAAAGT+TGG | - | chr3_4:10372443-10372462 | None:intergenic | 45.0% | |
| !!! | ATTAATATTAATTTGTATTT+TGG | - | chr3_4:10367956-10367975 | None:intergenic | 5.0% |
| !!! | TGTTATATTATATTTTAATT+AGG | - | chr3_4:10368179-10368198 | None:intergenic | 5.0% |
| !! | AATAATAAATTTAATTCATA+AGG | + | chr3_4:10370199-10370218 | Msa0489710:intron | 5.0% |
| ATTGCAGATCCTTTGGCCAG+AGG | + | chr3_4:10367455-10367474 | Msa0489710:CDS | 50.0% | |
| ! | GTTTTTGCTCAAGGCGGTTC+CGG | + | chr3_4:10367621-10367640 | Msa0489710:intron | 50.0% |
| ! | GGGGCGATCTGCAACATTTT+TGG | + | chr3_4:10367683-10367702 | Msa0489710:CDS | 50.0% |
| ! | CTGCCTCCTTTTTGATGTGC+AGG | + | chr3_4:10368237-10368256 | Msa0489710:intron | 50.0% |
| !! | GCACTGAGAGAGTTGATACG+GGG | - | chr3_4:10368369-10368388 | None:intergenic | 50.0% |
| CTAGAAAACTCCTGCCATGC+AGG | + | chr3_4:10368845-10368864 | Msa0489710:intron | 50.0% | |
| AACCTTCCCATAACCCTGCA+TGG | - | chr3_4:10368862-10368881 | None:intergenic | 50.0% | |
| ! | GCCAGAGACCTTTTAGCACA+TGG | + | chr3_4:10368950-10368969 | Msa0489710:intron | 50.0% |
| TTGATTTCTCGGCAGGATGC+AGG | + | chr3_4:10369129-10369148 | Msa0489710:intron | 50.0% | |
| ! | GCTCTGGCTGATTCAGTATC+TGG | - | chr3_4:10369387-10369406 | None:intergenic | 50.0% |
| TGGTTGACAGCACAAACAGC+AGG | - | chr3_4:10369465-10369484 | None:intergenic | 50.0% | |
| ! | TGCTGTTTGTGCTGTCAACC+AGG | + | chr3_4:10369464-10369483 | Msa0489710:CDS | 50.0% |
| GATTATCAGGCCCCTTTCTC+TGG | + | chr3_4:10369820-10369839 | Msa0489710:intron | 50.0% | |
| CGTATTCGGTTCCCAGAGAA+AGG | - | chr3_4:10369835-10369854 | None:intergenic | 50.0% | |
| ! | TTTTCTCCCTGTGCGTTGCA+TGG | + | chr3_4:10370321-10370340 | Msa0489710:intron | 50.0% |
| TTTCTCCCTGTGCGTTGCAT+GGG | + | chr3_4:10370322-10370341 | Msa0489710:intron | 50.0% | |
| AAGAACCCATGCAACGCACA+GGG | - | chr3_4:10370330-10370349 | None:intergenic | 50.0% | |
| AGTAATGCGTAAGGTCGGTG+TGG | + | chr3_4:10370449-10370468 | Msa0489710:CDS | 50.0% | |
| TAAGGTCGGTGTGGAAGTTG+TGG | + | chr3_4:10370458-10370477 | Msa0489710:CDS | 50.0% | |
| AAGGTCGGTGTGGAAGTTGT+GGG | + | chr3_4:10370459-10370478 | Msa0489710:CDS | 50.0% | |
| !! | CTGGGAGCACTGAAAGTTAC+AGG | + | chr3_4:10370483-10370502 | Msa0489710:CDS | 50.0% |
| !! | CACTGTTCGCGCTTTGAAAG+AGG | + | chr3_4:10370557-10370576 | Msa0489710:CDS | 50.0% |
| TCTTGGTATAGGCAAGCCGT+AGG | + | chr3_4:10371192-10371211 | Msa0489710:intron | 50.0% | |
| TGCCATTCTGCAGGATTACC+AGG | + | chr3_4:10371249-10371268 | Msa0489710:CDS | 50.0% | |
| CACCTGGTAATCCTGCAGAA+TGG | - | chr3_4:10371254-10371273 | None:intergenic | 50.0% | |
| !! | TGAGTATCGACACCGTATGG+AGG | - | chr3_4:10371827-10371846 | None:intergenic | 50.0% |
| ! | GTACCGATCTACTTTGCTGC+AGG | + | chr3_4:10372135-10372154 | Msa0489710:intron | 50.0% |
| CCCATATCACCACACGGCAA+CGG | - | chr3_4:10365523-10365542 | None:intergenic | 55.0% | |
| CCGTTGCCGTGTGGTGATAT+GGG | + | chr3_4:10365520-10365539 | Msa0489710:CDS | 55.0% | |
| AATGTTGCAGATCGCCCCGA+TGG | - | chr3_4:10367681-10367700 | None:intergenic | 55.0% | |
| GACAAGGGAAAGGGGGGATT+CGG | - | chr3_4:10368071-10368090 | None:intergenic | 55.0% | |
| ACTCCTGCCATGCAGGGTTA+TGG | + | chr3_4:10368852-10368871 | Msa0489710:intron | 55.0% | |
| CTCCTGCCATGCAGGGTTAT+GGG | + | chr3_4:10368853-10368872 | Msa0489710:intron | 55.0% | |
| TTCCCATAACCCTGCATGGC+AGG | - | chr3_4:10368858-10368877 | None:intergenic | 55.0% | |
| TGCCATGCAGGGTTATGGGA+AGG | + | chr3_4:10368857-10368876 | Msa0489710:intron | 55.0% | |
| GAAGAACCCATGCAACGCAC+AGG | - | chr3_4:10370331-10370350 | None:intergenic | 55.0% | |
| GGTGTGGAAGTTGTGGGACT+GGG | + | chr3_4:10370465-10370484 | Msa0489710:CDS | 55.0% | |
| GGAGGAACTTCCAAGCTCGT+TGG | - | chr3_4:10370996-10371015 | None:intergenic | 55.0% | |
| GCAAGCCGTAGGTTTACACC+AGG | + | chr3_4:10371203-10371222 | Msa0489710:CDS | 55.0% | |
| CCATACAACGAGCTATGGCC+TGG | - | chr3_4:10371224-10371243 | None:intergenic | 55.0% | |
| CCAGGCCATAGCTCGTTGTA+TGG | + | chr3_4:10371221-10371240 | Msa0489710:CDS | 55.0% | |
| GGAGGAACTGCATGTTTGCC+AGG | + | chr3_4:10371306-10371325 | Msa0489710:CDS | 55.0% | |
| GCATGTTTGCCAGGTTTGGC+AGG | + | chr3_4:10371315-10371334 | Msa0489710:CDS | 55.0% | |
| ! | GTATCGACACCGTATGGAGG+AGG | - | chr3_4:10371824-10371843 | None:intergenic | 55.0% |
| AGAAGTTCCGCCAGAAGCCT+AGG | + | chr3_4:10372347-10372366 | Msa0489710:CDS | 55.0% | |
| ! | TGCACCCTCCAACTTTAGGG+AGG | + | chr3_4:10372432-10372451 | Msa0489710:three_prime_UTR | 55.0% |
| CCAGCCTCCCTAAAGTTGGA+GGG | - | chr3_4:10372439-10372458 | None:intergenic | 55.0% | |
| TCCAGCCTCCCTAAAGTTGG+AGG | - | chr3_4:10372440-10372459 | None:intergenic | 55.0% | |
| ! | CAAGTGTTGCCGTTGCCGTG+TGG | + | chr3_4:10365511-10365530 | Msa0489710:CDS | 60.0% |
| GCCGTTGCCGTGTGGTGATA+TGG | + | chr3_4:10365519-10365538 | Msa0489710:CDS | 60.0% | |
| TGAATGACAGCTGGGGCCTC+TGG | - | chr3_4:10367474-10367493 | None:intergenic | 60.0% | |
| GGTCAGAGAGCTCAGGTTCC+TGG | + | chr3_4:10367505-10367524 | Msa0489710:CDS | 60.0% | |
| CGGTGTGGAAGTTGTGGGAC+TGG | + | chr3_4:10370464-10370483 | Msa0489710:CDS | 60.0% | |
| TTCCGCCAGAAGCCTAGGCT+CGG | + | chr3_4:10372352-10372371 | Msa0489710:CDS | 60.0% | |
| AGCCTAGGCTCGGCCTCATA+TGG | + | chr3_4:10372362-10372381 | Msa0489710:CDS | 60.0% | |
| CACCATATGAGGCCGAGCCT+AGG | - | chr3_4:10372367-10372386 | None:intergenic | 60.0% | |
| ! | CCCTCCAACTTTAGGGAGGC+TGG | + | chr3_4:10372436-10372455 | Msa0489710:three_prime_UTR | 60.0% |
| TGAGGCCGAGCCTAGGCTTC+TGG | - | chr3_4:10372360-10372379 | None:intergenic | 65.0% | |
| CAGCTGGGGCCTCTGGCCAA+AGG | - | chr3_4:10367467-10367486 | None:intergenic | 70.0% | |
| GGCCGAGCCTAGGCTTCTGG+CGG | - | chr3_4:10372357-10372376 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 10365306 | 10372662 | 10365306 | ID=Msa0489710;Name=Msa0489710 |
| chr3_4 | mRNA | 10365306 | 10372662 | 10365306 | ID=Msa0489710-mRNA-1;Parent=Msa0489710;Name=Msa0489710-mRNA-1;_AED=0.15;_eAED=0.15;_QI=127|0.90|0.91|1|1|1|12|275|489 |
| chr3_4 | exon | 10365306 | 10365758 | 10365306 | ID=Msa0489710-mRNA-1:exon:3360;Parent=Msa0489710-mRNA-1 |
| chr3_4 | exon | 10367408 | 10367544 | 10367408 | ID=Msa0489710-mRNA-1:exon:3361;Parent=Msa0489710-mRNA-1 |
| chr3_4 | exon | 10367634 | 10367704 | 10367634 | ID=Msa0489710-mRNA-1:exon:3362;Parent=Msa0489710-mRNA-1 |
| chr3_4 | exon | 10368259 | 10368326 | 10368259 | ID=Msa0489710-mRNA-1:exon:3363;Parent=Msa0489710-mRNA-1 |
| chr3_4 | exon | 10369144 | 10369205 | 10369144 | ID=Msa0489710-mRNA-1:exon:3364;Parent=Msa0489710-mRNA-1 |
| chr3_4 | exon | 10369388 | 10369485 | 10369388 | ID=Msa0489710-mRNA-1:exon:3365;Parent=Msa0489710-mRNA-1 |
| chr3_4 | exon | 10370037 | 10370118 | 10370037 | ID=Msa0489710-mRNA-1:exon:3366;Parent=Msa0489710-mRNA-1 |
| chr3_4 | exon | 10370436 | 10370578 | 10370436 | ID=Msa0489710-mRNA-1:exon:3367;Parent=Msa0489710-mRNA-1 |
| chr3_4 | exon | 10370683 | 10370834 | 10370683 | ID=Msa0489710-mRNA-1:exon:3368;Parent=Msa0489710-mRNA-1 |
| chr3_4 | exon | 10371203 | 10371336 | 10371203 | ID=Msa0489710-mRNA-1:exon:3369;Parent=Msa0489710-mRNA-1 |
| chr3_4 | exon | 10371756 | 10371874 | 10371756 | ID=Msa0489710-mRNA-1:exon:3370;Parent=Msa0489710-mRNA-1 |
| chr3_4 | exon | 10372310 | 10372662 | 10372310 | ID=Msa0489710-mRNA-1:exon:3371;Parent=Msa0489710-mRNA-1 |
| chr3_4 | five_prime_UTR | 10365306 | 10365432 | 10365306 | ID=Msa0489710-mRNA-1:five_prime_utr;Parent=Msa0489710-mRNA-1 |
| chr3_4 | CDS | 10365433 | 10365758 | 10365433 | ID=Msa0489710-mRNA-1:cds;Parent=Msa0489710-mRNA-1 |
| chr3_4 | CDS | 10367408 | 10367544 | 10367408 | ID=Msa0489710-mRNA-1:cds;Parent=Msa0489710-mRNA-1 |
| chr3_4 | CDS | 10367634 | 10367704 | 10367634 | ID=Msa0489710-mRNA-1:cds;Parent=Msa0489710-mRNA-1 |
| chr3_4 | CDS | 10368259 | 10368326 | 10368259 | ID=Msa0489710-mRNA-1:cds;Parent=Msa0489710-mRNA-1 |
| chr3_4 | CDS | 10369144 | 10369205 | 10369144 | ID=Msa0489710-mRNA-1:cds;Parent=Msa0489710-mRNA-1 |
| chr3_4 | CDS | 10369388 | 10369485 | 10369388 | ID=Msa0489710-mRNA-1:cds;Parent=Msa0489710-mRNA-1 |
| chr3_4 | CDS | 10370037 | 10370118 | 10370037 | ID=Msa0489710-mRNA-1:cds;Parent=Msa0489710-mRNA-1 |
| chr3_4 | CDS | 10370436 | 10370578 | 10370436 | ID=Msa0489710-mRNA-1:cds;Parent=Msa0489710-mRNA-1 |
| chr3_4 | CDS | 10370683 | 10370834 | 10370683 | ID=Msa0489710-mRNA-1:cds;Parent=Msa0489710-mRNA-1 |
| chr3_4 | CDS | 10371203 | 10371336 | 10371203 | ID=Msa0489710-mRNA-1:cds;Parent=Msa0489710-mRNA-1 |
| chr3_4 | CDS | 10371756 | 10371874 | 10371756 | ID=Msa0489710-mRNA-1:cds;Parent=Msa0489710-mRNA-1 |
| chr3_4 | CDS | 10372310 | 10372387 | 10372310 | ID=Msa0489710-mRNA-1:cds;Parent=Msa0489710-mRNA-1 |
| chr3_4 | three_prime_UTR | 10372388 | 10372662 | 10372388 | ID=Msa0489710-mRNA-1:three_prime_utr;Parent=Msa0489710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
