Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475410 | XP_013461685.1 | 94.170 | 223 | 13 | 0 | 1 | 223 | 1 | 223 | 5.17e-147 | 418 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475410 | sp|Q9FQA3|GST23_MAIZE | 51.351 | 222 | 107 | 1 | 1 | 221 | 1 | 222 | 3.69e-81 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475410 | A0A072VC23 | 94.170 | 223 | 13 | 0 | 1 | 223 | 1 | 223 | 2.47e-147 | 418 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015300 | Msa0475410 | 0.803133 | 4.031389e-49 | -8.615850e-47 |
| Msa0025740 | Msa0475410 | 0.838733 | 2.413636e-57 | -8.615850e-47 |
| Msa0050730 | Msa0475410 | 0.831517 | 1.596166e-55 | -8.615850e-47 |
| Msa0050760 | Msa0475410 | 0.841957 | 3.466302e-58 | -8.615850e-47 |
| Msa0073460 | Msa0475410 | 0.818556 | 1.843275e-52 | -8.615850e-47 |
| Msa0090100 | Msa0475410 | 0.819842 | 9.391957e-53 | -8.615850e-47 |
| Msa0092990 | Msa0475410 | 0.818137 | 2.293164e-52 | -8.615850e-47 |
| Msa0108560 | Msa0475410 | 0.819233 | 1.293205e-52 | -8.615850e-47 |
| Msa0120340 | Msa0475410 | 0.804477 | 2.120431e-49 | -8.615850e-47 |
| Msa0121620 | Msa0475410 | 0.832351 | 9.933295e-56 | -8.615850e-47 |
| Msa0137570 | Msa0475410 | 0.818982 | 1.475358e-52 | -8.615850e-47 |
| Msa0165970 | Msa0475410 | 0.818857 | 1.574414e-52 | -8.615850e-47 |
| Msa0182570 | Msa0475410 | 0.819128 | 1.366126e-52 | -8.615850e-47 |
| Msa0188630 | Msa0475410 | 0.800021 | 1.752458e-48 | -8.615850e-47 |
| Msa0220580 | Msa0475410 | 0.806628 | 7.502204e-50 | -8.615850e-47 |
| Msa0223100 | Msa0475410 | 0.800374 | 1.485436e-48 | -8.615850e-47 |
| Msa0223290 | Msa0475410 | 0.823348 | 1.454029e-53 | -8.615850e-47 |
| Msa0223380 | Msa0475410 | 0.830821 | 2.366799e-55 | -8.615850e-47 |
| Msa0233610 | Msa0475410 | 0.824712 | 6.955842e-54 | -8.615850e-47 |
| Msa0236630 | Msa0475410 | 0.805042 | 1.615488e-49 | -8.615850e-47 |
| Msa0365490 | Msa0475410 | 0.819899 | 9.114395e-53 | -8.615850e-47 |
| Msa0370430 | Msa0475410 | 0.839753 | 1.312004e-57 | -8.615850e-47 |
| Msa0377530 | Msa0475410 | 0.804084 | 2.559462e-49 | -8.615850e-47 |
| Msa0379540 | Msa0475410 | 0.801247 | 9.854340e-49 | -8.615850e-47 |
| Msa0379550 | Msa0475410 | 0.989385 | 6.773948e-178 | -8.615850e-47 |
| Msa0379640 | Msa0475410 | 0.812796 | 3.539403e-51 | -8.615850e-47 |
| Msa0380040 | Msa0475410 | 0.838988 | 2.072701e-57 | -8.615850e-47 |
| Msa0389810 | Msa0475410 | 0.839889 | 1.209482e-57 | -8.615850e-47 |
| Msa0394340 | Msa0475410 | 0.809372 | 1.954980e-50 | -8.615850e-47 |
| Msa0404220 | Msa0475410 | 0.825355 | 4.905325e-54 | -8.615850e-47 |
| Msa0404230 | Msa0475410 | 0.922551 | 8.491146e-89 | -8.615850e-47 |
| Msa0426330 | Msa0475410 | 0.812000 | 5.284414e-51 | -8.615850e-47 |
| Msa0429290 | Msa0475410 | 0.828206 | 1.022534e-54 | -8.615850e-47 |
| Msa0442250 | Msa0475410 | 0.805415 | 1.349648e-49 | -8.615850e-47 |
| Msa0449760 | Msa0475410 | 0.808685 | 2.742245e-50 | -8.615850e-47 |
| Msa0449830 | Msa0475410 | 0.820531 | 6.529555e-53 | -8.615850e-47 |
| Msa0458440 | Msa0475410 | 0.820952 | 5.225425e-53 | -8.615850e-47 |
| Msa0464420 | Msa0475410 | 0.838922 | 2.155762e-57 | -8.615850e-47 |
| Msa0464900 | Msa0475410 | 0.841071 | 5.935139e-58 | -8.615850e-47 |
| Msa0468130 | Msa0475410 | 0.835677 | 1.459895e-56 | -8.615850e-47 |
| Msa0473240 | Msa0475410 | 0.819144 | 1.354816e-52 | -8.615850e-47 |
| Msa0475410 | Msa0475580 | 0.827145 | 1.838548e-54 | -8.615850e-47 |
| Msa0475410 | Msa0482190 | -0.814368 | 1.596213e-51 | -8.615850e-47 |
| Msa0475410 | Msa0484780 | 0.829699 | 4.447293e-55 | -8.615850e-47 |
| Msa0475410 | Msa0485500 | -0.806014 | 1.010250e-49 | -8.615850e-47 |
| Msa0475410 | Msa0489610 | 0.819411 | 1.177685e-52 | -8.615850e-47 |
| Msa0475410 | Msa0489710 | 0.800097 | 1.690704e-48 | -8.615850e-47 |
| Msa0475410 | Msa0491520 | 0.805933 | 1.050880e-49 | -8.615850e-47 |
| Msa0475410 | Msa0505060 | 0.813232 | 2.840216e-51 | -8.615850e-47 |
| Msa0475410 | Msa0510040 | 0.850143 | 2.054876e-60 | -8.615850e-47 |
| Msa0475410 | Msa0517330 | 0.818777 | 1.642295e-52 | -8.615850e-47 |
| Msa0475410 | Msa0517490 | 0.802258 | 6.109489e-49 | -8.615850e-47 |
| Msa0475410 | Msa0519220 | 0.820329 | 7.267092e-53 | -8.615850e-47 |
| Msa0475410 | Msa0536220 | 0.802713 | 4.922722e-49 | -8.615850e-47 |
| Msa0475410 | Msa0553460 | 0.801542 | 8.573971e-49 | -8.615850e-47 |
| Msa0475410 | Msa0555200 | 0.809378 | 1.948902e-50 | -8.615850e-47 |
| Msa0475410 | Msa0578970 | 0.818760 | 1.656947e-52 | -8.615850e-47 |
| Msa0475410 | Msa0599580 | 0.825787 | 3.874397e-54 | -8.615850e-47 |
| Msa0475410 | Msa0608710 | 0.830454 | 2.910612e-55 | -8.615850e-47 |
| Msa0475410 | Msa0610590 | 0.820194 | 7.803213e-53 | -8.615850e-47 |
| Msa0475410 | Msa0611550 | 0.804291 | 2.317846e-49 | -8.615850e-47 |
| Msa0475410 | Msa0622340 | 0.811808 | 5.816953e-51 | -8.615850e-47 |
| Msa0475410 | Msa0638280 | 0.809177 | 2.152915e-50 | -8.615850e-47 |
| Msa0475410 | Msa0638320 | 0.812606 | 3.896687e-51 | -8.615850e-47 |
| Msa0475410 | Msa0644840 | 0.808335 | 3.257067e-50 | -8.615850e-47 |
| Msa0475410 | Msa0647830 | 0.800824 | 1.202105e-48 | -8.615850e-47 |
| Msa0475410 | Msa0651190 | 0.826434 | 2.718173e-54 | -8.615850e-47 |
| Msa0475410 | Msa0662650 | 0.820610 | 6.263997e-53 | -8.615850e-47 |
| Msa0475410 | Msa0677270 | 0.808060 | 3.728959e-50 | -8.615850e-47 |
| Msa0475410 | Msa0688670 | 0.801510 | 8.702947e-49 | -8.615850e-47 |
| Msa0475410 | Msa0690440 | 0.800354 | 1.499126e-48 | -8.615850e-47 |
| Msa0475410 | Msa0694250 | 0.831856 | 1.316566e-55 | -8.615850e-47 |
| Msa0475410 | Msa0708860 | 0.824855 | 6.435963e-54 | -8.615850e-47 |
| Msa0475410 | Msa0714960 | 0.807026 | 6.181192e-50 | -8.615850e-47 |
| Msa0475410 | Msa0731180 | 0.819895 | 9.133644e-53 | -8.615850e-47 |
| Msa0475410 | Msa0756310 | 0.820653 | 6.123591e-53 | -8.615850e-47 |
| Msa0475410 | Msa0757050 | 0.816044 | 6.774379e-52 | -8.615850e-47 |
| Msa0475410 | Msa0757080 | 0.808368 | 3.206062e-50 | -8.615850e-47 |
| Msa0475410 | Msa0771580 | 0.802916 | 4.469522e-49 | -8.615850e-47 |
| Msa0475410 | Msa0789270 | 0.806490 | 8.021277e-50 | -8.615850e-47 |
| Msa0475410 | Msa0789290 | 0.800704 | 1.271946e-48 | -8.615850e-47 |
| Msa0475410 | Msa0795080 | 0.801703 | 7.944939e-49 | -8.615850e-47 |
| Msa0475410 | Msa0798030 | 0.805902 | 1.066932e-49 | -8.615850e-47 |
| Msa0475410 | Msa0835730 | 0.810648 | 1.038175e-50 | -8.615850e-47 |
| Msa0475410 | Msa0864470 | -0.812497 | 4.115018e-51 | -8.615850e-47 |
| Msa0475410 | Msa0870620 | 0.803996 | 2.669861e-49 | -8.615850e-47 |
| Msa0475410 | Msa0882510 | 0.801440 | 8.996774e-49 | -8.615850e-47 |
| Msa0475410 | Msa0899230 | 0.833284 | 5.826870e-56 | -8.615850e-47 |
| Msa0475410 | Msa0908170 | 0.855106 | 7.879601e-62 | -8.615850e-47 |
| Msa0475410 | Msa0910980 | -0.838996 | 2.063375e-57 | -8.615850e-47 |
| Msa0475410 | Msa0927670 | 0.832460 | 9.336936e-56 | -8.615850e-47 |
| Msa0475410 | Msa0960160 | 0.845362 | 4.259219e-59 | -8.615850e-47 |
| Msa0475410 | Msa0982270 | 0.838147 | 3.418480e-57 | -8.615850e-47 |
| Msa0475410 | Msa0992490 | -0.824189 | 9.238249e-54 | -8.615850e-47 |
| Msa0475410 | Msa0999040 | 0.832973 | 6.961273e-56 | -8.615850e-47 |
| Msa0475410 | Msa1002480 | 0.806028 | 1.003458e-49 | -8.615850e-47 |
| Msa0475410 | Msa1015060 | 0.802970 | 4.357256e-49 | -8.615850e-47 |
| Msa0475410 | Msa1026760 | 0.810080 | 1.377096e-50 | -8.615850e-47 |
| Msa0475410 | Msa1026790 | 0.814447 | 1.533947e-51 | -8.615850e-47 |
| Msa0475410 | Msa1027290 | 0.805947 | 1.043745e-49 | -8.615850e-47 |
| Msa0475410 | Msa1039880 | 0.821568 | 3.768329e-53 | -8.615850e-47 |
| Msa0475410 | Msa1053260 | 0.810279 | 1.247358e-50 | -8.615850e-47 |
| Msa0475410 | Msa1072460 | -0.807777 | 4.282155e-50 | -8.615850e-47 |
| Msa0475410 | Msa1073070 | -0.816387 | 5.676536e-52 | -8.615850e-47 |
| Msa0475410 | Msa1082500 | 0.813476 | 2.510330e-51 | -8.615850e-47 |
| Msa0475410 | Msa1087470 | 0.845213 | 4.671836e-59 | -8.615850e-47 |
| Msa0475410 | Msa1092090 | 0.826672 | 2.386152e-54 | -8.615850e-47 |
| Msa0475410 | Msa1092820 | 0.812398 | 4.325641e-51 | -8.615850e-47 |
| Msa0475410 | Msa1116690 | 0.801855 | 7.392683e-49 | -8.615850e-47 |
| Msa0475410 | Msa1124540 | -0.802217 | 6.229086e-49 | -8.615850e-47 |
| Msa0475410 | Msa1142500 | 0.803496 | 3.390301e-49 | -8.615850e-47 |
| Msa0475410 | Msa1151710 | 0.804091 | 2.551578e-49 | -8.615850e-47 |
| Msa0475410 | Msa1199560 | 0.803197 | 3.909790e-49 | -8.615850e-47 |
| Msa0475410 | Msa1207380 | 0.822382 | 2.441312e-53 | -8.615850e-47 |
| Msa0475410 | Msa1217810 | 0.800015 | 1.757324e-48 | -8.615850e-47 |
| Msa0475410 | Msa1218650 | 0.813655 | 2.293346e-51 | -8.615850e-47 |
| Msa0475410 | Msa1233500 | 0.854230 | 1.413872e-61 | -8.615850e-47 |
| Msa0475410 | Msa1233890 | 0.807387 | 5.181975e-50 | -8.615850e-47 |
| Msa0475410 | Msa1257600 | 0.811964 | 5.380631e-51 | -8.615850e-47 |
| Msa0475410 | Msa1258380 | -0.810360 | 1.198078e-50 | -8.615850e-47 |
| Msa0475410 | Msa1276440 | 0.816069 | 6.687436e-52 | -8.615850e-47 |
| Msa0475410 | Msa1289010 | 0.801158 | 1.027567e-48 | -8.615850e-47 |
| Msa0475410 | Msa1296940 | 0.814096 | 1.833336e-51 | -8.615850e-47 |
| Msa0475410 | Msa1306750 | 0.812986 | 3.216357e-51 | -8.615850e-47 |
| Msa0475410 | Msa1307740 | 0.842734 | 2.158017e-58 | -8.615850e-47 |
| Msa0475410 | Msa1308590 | 0.825783 | 3.883308e-54 | -8.615850e-47 |
| Msa0475410 | Msa1308640 | 0.810087 | 1.371974e-50 | -8.615850e-47 |
| Msa0475410 | Msa1316560 | -0.804686 | 1.918003e-49 | -8.615850e-47 |
| Msa0475410 | Msa1322190 | 0.817945 | 2.534588e-52 | -8.615850e-47 |
| Msa0475410 | Msa1340650 | 0.819166 | 1.339760e-52 | -8.615850e-47 |
| Msa0475410 | Msa1359650 | -0.803915 | 2.775043e-49 | -8.615850e-47 |
| Msa0475410 | Msa1382930 | 0.803562 | 3.285601e-49 | -8.615850e-47 |
| Msa0475410 | Msa1396830 | 0.801795 | 7.607853e-49 | -8.615850e-47 |
| Msa0475410 | Msa1404540 | 0.802550 | 5.319500e-49 | -8.615850e-47 |
| Msa0475410 | Msa1408790 | 0.844452 | 7.492896e-59 | -8.615850e-47 |
| Msa0475410 | Msa1419110 | 0.825653 | 4.167729e-54 | -8.615850e-47 |
| Msa0475410 | Msa1436040 | 0.846753 | 1.781676e-59 | -8.615850e-47 |
| Msa0475410 | Msa1439230 | 0.818774 | 1.644977e-52 | -8.615850e-47 |
| Msa0475410 | Msa1440600 | 0.841671 | 4.124500e-58 | -8.615850e-47 |
| Msa0475410 | Msa1444250 | -0.815743 | 7.905873e-52 | -8.615850e-47 |
| Msa0475410 | Msa1444740 | 0.821361 | 4.206161e-53 | -8.615850e-47 |
| Msa0260810 | Msa0475410 | 0.802358 | 5.827561e-49 | -8.615850e-47 |
| Msa0269450 | Msa0475410 | 0.825942 | 3.559521e-54 | -8.615850e-47 |
| Msa0282250 | Msa0475410 | 0.817119 | 3.890112e-52 | -8.615850e-47 |
| Msa0292180 | Msa0475410 | 0.825315 | 5.012663e-54 | -8.615850e-47 |
| Msa0335040 | Msa0475410 | 0.813521 | 2.454235e-51 | -8.615850e-47 |
| Msa0344830 | Msa0475410 | 0.801052 | 1.079793e-48 | -8.615850e-47 |
| Msa0347650 | Msa0475410 | 0.824533 | 7.665030e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475410 | MtrunA17_Chr3g0132581 | 94.170 | 223 | 13 | 0 | 1 | 223 | 1 | 223 | 4.75e-151 | 418 |
| Msa0475410 | MtrunA17_Chr4g0008781 | 50.476 | 210 | 104 | 0 | 4 | 213 | 7 | 216 | 1.07e-72 | 220 |
| Msa0475410 | MtrunA17_Chr7g0240631 | 48.182 | 220 | 112 | 2 | 4 | 222 | 6 | 224 | 3.47e-71 | 216 |
| Msa0475410 | MtrunA17_Chr8g0379581 | 49.772 | 219 | 106 | 1 | 1 | 215 | 1 | 219 | 4.55e-71 | 216 |
| Msa0475410 | MtrunA17_Chr7g0240691 | 48.416 | 221 | 111 | 2 | 4 | 222 | 36 | 255 | 4.75e-71 | 217 |
| Msa0475410 | MtrunA17_Chr7g0240681 | 47.273 | 220 | 113 | 2 | 4 | 221 | 6 | 224 | 2.90e-70 | 214 |
| Msa0475410 | MtrunA17_Chr4g0008791 | 46.222 | 225 | 117 | 3 | 1 | 222 | 1 | 224 | 2.94e-70 | 214 |
| Msa0475410 | MtrunA17_Chr7g0240581 | 50.228 | 219 | 107 | 2 | 4 | 221 | 6 | 223 | 5.90e-70 | 213 |
| Msa0475410 | MtrunA17_Chr6g0483141 | 51.042 | 192 | 94 | 0 | 19 | 210 | 17 | 208 | 1.04e-69 | 213 |
| Msa0475410 | MtrunA17_Chr7g0240641 | 48.182 | 220 | 112 | 2 | 4 | 222 | 6 | 224 | 7.08e-69 | 210 |
| Msa0475410 | MtrunA17_Chr7g0240561 | 46.847 | 222 | 116 | 2 | 1 | 221 | 3 | 223 | 2.95e-68 | 209 |
| Msa0475410 | MtrunA17_Chr1g0196771 | 45.045 | 222 | 119 | 2 | 4 | 223 | 2 | 222 | 7.78e-68 | 207 |
| Msa0475410 | MtrunA17_Chr8g0379561 | 46.635 | 208 | 111 | 0 | 1 | 208 | 2 | 209 | 1.06e-66 | 205 |
| Msa0475410 | MtrunA17_Chr7g0240611 | 48.182 | 220 | 108 | 3 | 4 | 222 | 6 | 220 | 6.96e-66 | 202 |
| Msa0475410 | MtrunA17_Chr1g0212301 | 49.048 | 210 | 100 | 3 | 6 | 210 | 4 | 211 | 1.54e-65 | 202 |
| Msa0475410 | MtrunA17_Chr1g0196661 | 48.309 | 207 | 101 | 4 | 6 | 208 | 4 | 208 | 2.13e-65 | 201 |
| Msa0475410 | MtrunA17_Chr7g0240551 | 47.867 | 211 | 108 | 2 | 4 | 213 | 6 | 215 | 3.63e-65 | 201 |
| Msa0475410 | MtrunA17_Chr7g0240541 | 48.815 | 211 | 106 | 2 | 4 | 213 | 6 | 215 | 2.16e-64 | 199 |
| Msa0475410 | MtrunA17_Chr1g0196691 | 43.891 | 221 | 119 | 3 | 6 | 222 | 29 | 248 | 2.06e-63 | 197 |
| Msa0475410 | MtrunA17_Chr7g0240531 | 47.664 | 214 | 106 | 3 | 4 | 216 | 6 | 214 | 4.20e-62 | 193 |
| Msa0475410 | MtrunA17_Chr1g0196721 | 43.891 | 221 | 117 | 4 | 5 | 220 | 2 | 220 | 9.14e-62 | 192 |
| Msa0475410 | MtrunA17_Chr7g0240671 | 49.010 | 202 | 97 | 3 | 6 | 206 | 5 | 201 | 1.38e-61 | 192 |
| Msa0475410 | MtrunA17_Chr5g0417011 | 44.651 | 215 | 113 | 2 | 6 | 214 | 8 | 222 | 1.73e-61 | 191 |
| Msa0475410 | MtrunA17_Chr7g0240511 | 47.032 | 219 | 109 | 3 | 4 | 221 | 6 | 218 | 2.03e-61 | 191 |
| Msa0475410 | MtrunA17_Chr4g0029341 | 46.047 | 215 | 112 | 3 | 3 | 214 | 2 | 215 | 4.75e-61 | 190 |
| Msa0475410 | MtrunA17_Chr7g0240521 | 47.059 | 221 | 112 | 3 | 4 | 223 | 13 | 229 | 2.27e-60 | 189 |
| Msa0475410 | MtrunA17_Chr7g0240651 | 47.273 | 220 | 110 | 3 | 4 | 222 | 6 | 220 | 2.02e-57 | 181 |
| Msa0475410 | MtrunA17_Chr1g0196711 | 43.519 | 216 | 114 | 4 | 6 | 218 | 4 | 214 | 3.27e-57 | 181 |
| Msa0475410 | MtrunA17_Chr2g0312771 | 44.175 | 206 | 112 | 2 | 3 | 207 | 2 | 205 | 4.26e-56 | 177 |
| Msa0475410 | MtrunA17_Chr2g0312751 | 43.689 | 206 | 113 | 2 | 3 | 207 | 2 | 205 | 5.01e-56 | 177 |
| Msa0475410 | MtrunA17_Chr7g0240661 | 49.510 | 204 | 97 | 3 | 4 | 206 | 6 | 204 | 1.27e-55 | 177 |
| Msa0475410 | MtrunA17_Chr5g0415411 | 41.150 | 226 | 125 | 3 | 1 | 218 | 1 | 226 | 1.14e-52 | 169 |
| Msa0475410 | MtrunA17_Chr2g0312781 | 41.262 | 206 | 118 | 2 | 3 | 207 | 19 | 222 | 8.93e-52 | 167 |
| Msa0475410 | MtrunA17_Chr2g0312791 | 43.810 | 210 | 113 | 5 | 3 | 209 | 2 | 209 | 6.27e-51 | 164 |
| Msa0475410 | MtrunA17_Chr2g0312721 | 38.532 | 218 | 128 | 3 | 3 | 216 | 2 | 217 | 7.10e-51 | 164 |
| Msa0475410 | MtrunA17_Chr8g0363751 | 41.256 | 223 | 123 | 3 | 1 | 215 | 1 | 223 | 1.29e-50 | 164 |
| Msa0475410 | MtrunA17_Chr2g0312811 | 40.000 | 220 | 125 | 5 | 3 | 218 | 2 | 218 | 1.81e-50 | 163 |
| Msa0475410 | MtrunA17_Chr2g0312731 | 40.291 | 206 | 120 | 3 | 3 | 207 | 2 | 205 | 2.00e-49 | 160 |
| Msa0475410 | MtrunA17_Chr4g0069471 | 49.727 | 183 | 85 | 6 | 4 | 182 | 24 | 203 | 2.74e-46 | 152 |
| Msa0475410 | MtrunA17_Chr2g0312681 | 37.327 | 217 | 133 | 3 | 3 | 218 | 2 | 216 | 2.04e-45 | 150 |
| Msa0475410 | MtrunA17_Chr3g0107731 | 45.556 | 180 | 96 | 2 | 2 | 180 | 6 | 184 | 2.74e-45 | 150 |
| Msa0475410 | MtrunA17_Chr3g0107741 | 47.561 | 164 | 85 | 1 | 1 | 163 | 5 | 168 | 5.02e-45 | 149 |
| Msa0475410 | MtrunA17_Chr8g0357241 | 47.531 | 162 | 84 | 1 | 3 | 163 | 2 | 163 | 3.51e-44 | 147 |
| Msa0475410 | MtrunA17_Chr8g0357211 | 46.914 | 162 | 85 | 1 | 3 | 163 | 2 | 163 | 7.55e-44 | 146 |
| Msa0475410 | MtrunA17_Chr5g0433801 | 37.037 | 216 | 133 | 2 | 3 | 217 | 4 | 217 | 8.86e-41 | 139 |
| Msa0475410 | MtrunA17_Chr2g0312691 | 37.788 | 217 | 132 | 3 | 3 | 218 | 2 | 216 | 3.75e-40 | 137 |
| Msa0475410 | MtrunA17_Chr8g0391631 | 43.396 | 159 | 82 | 3 | 1 | 151 | 17 | 175 | 1.32e-38 | 131 |
| Msa0475410 | MtrunA17_Chr2g0312711 | 37.788 | 217 | 131 | 4 | 3 | 218 | 2 | 215 | 3.89e-37 | 129 |
| Msa0475410 | MtrunA17_Chr2g0313561 | 50.000 | 58 | 28 | 1 | 49 | 105 | 2 | 59 | 2.85e-17 | 73.6 |
| Msa0475410 | MtrunA17_Chr5g0415421 | 39.726 | 73 | 41 | 1 | 29 | 98 | 11 | 83 | 9.94e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475410 | AT2G29420.1 | 43.891 | 221 | 124 | 0 | 3 | 223 | 7 | 227 | 3.26e-67 | 206 |
| Msa0475410 | AT3G09270.1 | 46.818 | 220 | 115 | 2 | 4 | 221 | 5 | 224 | 3.38e-67 | 206 |
| Msa0475410 | AT2G29460.1 | 44.749 | 219 | 120 | 1 | 4 | 221 | 6 | 224 | 2.61e-63 | 196 |
| Msa0475410 | AT2G29480.1 | 45.238 | 210 | 114 | 1 | 4 | 212 | 6 | 215 | 5.31e-62 | 193 |
| Msa0475410 | AT2G29490.1 | 42.009 | 219 | 126 | 1 | 4 | 221 | 6 | 224 | 3.50e-60 | 189 |
| Msa0475410 | AT2G29470.1 | 43.541 | 209 | 116 | 2 | 4 | 210 | 6 | 214 | 7.50e-59 | 185 |
| Msa0475410 | AT2G29450.1 | 41.818 | 220 | 126 | 2 | 4 | 221 | 5 | 224 | 9.67e-58 | 182 |
| Msa0475410 | AT2G29440.1 | 40.000 | 220 | 131 | 1 | 3 | 221 | 4 | 223 | 1.30e-57 | 182 |
| Msa0475410 | AT1G10370.1 | 41.364 | 220 | 120 | 4 | 1 | 212 | 1 | 219 | 5.99e-53 | 170 |
| Msa0475410 | AT1G78370.1 | 43.333 | 210 | 116 | 3 | 8 | 216 | 7 | 214 | 1.17e-52 | 169 |
| Msa0475410 | AT1G78340.1 | 45.977 | 174 | 93 | 1 | 3 | 175 | 2 | 175 | 7.53e-52 | 167 |
| Msa0475410 | AT1G78320.1 | 40.553 | 217 | 124 | 4 | 4 | 218 | 3 | 216 | 1.76e-51 | 166 |
| Msa0475410 | AT5G62480.1 | 38.053 | 226 | 131 | 2 | 4 | 220 | 7 | 232 | 2.10e-50 | 164 |
| Msa0475410 | AT1G78380.1 | 40.465 | 215 | 125 | 3 | 3 | 216 | 2 | 214 | 7.61e-50 | 162 |
| Msa0475410 | AT1G17170.1 | 43.478 | 207 | 113 | 4 | 3 | 208 | 2 | 205 | 9.79e-50 | 162 |
| Msa0475410 | AT1G74590.1 | 38.767 | 227 | 126 | 4 | 6 | 223 | 8 | 230 | 1.24e-49 | 162 |
| Msa0475410 | AT1G59670.1 | 40.455 | 220 | 123 | 4 | 4 | 215 | 5 | 224 | 2.47e-48 | 159 |
| Msa0475410 | AT1G17190.1 | 39.631 | 217 | 128 | 3 | 1 | 216 | 1 | 215 | 4.85e-48 | 157 |
| Msa0475410 | AT1G59700.1 | 42.523 | 214 | 115 | 4 | 4 | 209 | 5 | 218 | 4.97e-48 | 158 |
| Msa0475410 | AT1G10360.1 | 36.530 | 219 | 132 | 3 | 1 | 212 | 1 | 219 | 1.09e-47 | 157 |
| Msa0475410 | AT1G17180.1 | 39.908 | 218 | 126 | 4 | 3 | 218 | 2 | 216 | 9.80e-47 | 154 |
| Msa0475410 | AT1G69930.1 | 40.376 | 213 | 121 | 3 | 6 | 212 | 13 | 225 | 2.44e-46 | 154 |
| Msa0475410 | AT3G43800.1 | 39.640 | 222 | 127 | 4 | 1 | 217 | 1 | 220 | 7.88e-45 | 149 |
| Msa0475410 | AT1G27130.1 | 39.450 | 218 | 124 | 4 | 3 | 212 | 4 | 221 | 9.99e-45 | 149 |
| Msa0475410 | AT1G53680.1 | 45.238 | 168 | 89 | 2 | 6 | 170 | 8 | 175 | 1.32e-42 | 144 |
| Msa0475410 | AT1G78360.1 | 47.500 | 160 | 81 | 3 | 6 | 162 | 5 | 164 | 1.87e-42 | 143 |
| Msa0475410 | AT1G69920.1 | 38.889 | 216 | 124 | 4 | 5 | 212 | 34 | 249 | 1.84e-40 | 139 |
| Msa0475410 | AT1G27140.1 | 37.037 | 216 | 127 | 4 | 3 | 209 | 4 | 219 | 9.53e-38 | 132 |
| Msa0475410 | AT1G78320.2 | 34.722 | 216 | 111 | 4 | 4 | 218 | 3 | 189 | 2.04e-35 | 124 |
| Msa0475410 | AT5G62480.2 | 31.111 | 225 | 122 | 2 | 4 | 220 | 7 | 206 | 1.02e-33 | 120 |
| Msa0475410 | AT5G62480.3 | 31.111 | 225 | 121 | 2 | 4 | 220 | 7 | 205 | 1.24e-33 | 120 |
Find 71 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTCACGTTACTAGGGTTC+TGG | 0.230426 | 3_3:-78586903 | Msa0475410:CDS |
| AGAGGGCCAAGGCGCGATTT+TGG | 0.235373 | 3_3:-78586645 | Msa0475410:CDS |
| CTTGATATTATAGTATTCTA+TGG | 0.251887 | 3_3:+78585619 | Msa0475400:intron |
| TAAAATCTTCTTCAACATAT+TGG | 0.276929 | 3_3:+78586824 | Msa0475400:three_prime_UTR |
| TCGCGCCTTGGCCCTCTCAT+AGG | 0.290203 | 3_3:+78586651 | Msa0475400:three_prime_UTR |
| AAGTGGGCTCTTGAACTAAA+AGG | 0.296086 | 3_3:-78586856 | Msa0475410:CDS |
| ATTAACATATTGCATGATAT+TGG | 0.298727 | 3_3:+78585816 | Msa0475400:intron |
| TGATGTGTGTGTATGATATA+TGG | 0.313334 | 3_3:-78585849 | Msa0475410:three_prime_UTR |
| GGAGACTCACTCACGTTACT+AGG | 0.328682 | 3_3:-78586910 | Msa0475410:CDS |
| GAGCTCAGGTTCGTGTTTAT+AGG | 0.355178 | 3_3:+78585748 | Msa0475400:intron |
| GACATCTTCATCAGCTTAAG+AGG | 0.360365 | 3_3:-78585931 | Msa0475410:exon |
| GGCGTGCATTCTTTGATAAC+AGG | 0.364374 | 3_3:+78586002 | Msa0475400:three_prime_UTR |
| TGTGTTTACATGATTAGTTT+AGG | 0.367219 | 3_3:+78585722 | Msa0475400:intron |
| AATCACTAGTGATTCTGATA+TGG | 0.369693 | 3_3:+78586726 | Msa0475400:three_prime_UTR |
| ACAGGTACCTTCTTATAAAC+AGG | 0.378107 | 3_3:+78586769 | Msa0475400:three_prime_UTR |
| GGCTTTGCTGATATTGCTGT+TGG | 0.390337 | 3_3:-78586134 | Msa0475410:CDS |
| TTCCCTCAAGTCCACTTTCA+AGG | 0.391350 | 3_3:+78586183 | Msa0475400:three_prime_UTR |
| CACTTGACCCTCAGGACAAA+TGG | 0.402811 | 3_3:+78586874 | Msa0475400:three_prime_UTR |
| GGCTAAATTCGCCGATGATA+AGG | 0.406052 | 3_3:-78586623 | Msa0475410:intron |
| ATCCTTGAAAGTGGACTTGA+GGG | 0.416245 | 3_3:-78586185 | Msa0475410:CDS |
| CCATGGACTCTGTATCAATC+AGG | 0.416951 | 3_3:+78586063 | Msa0475400:three_prime_UTR |
| CTTGAGGGAAGGCGCTACTT+TGG | 0.416974 | 3_3:-78586170 | Msa0475410:CDS |
| TAGAGTATGTTGATGAGATC+TGG | 0.424571 | 3_3:-78586702 | Msa0475410:CDS |
| TTGATATTATAGTATTCTAT+GGG | 0.439636 | 3_3:+78585620 | Msa0475400:intron |
| TACTTTGGAGGTGAAAATAT+AGG | 0.440103 | 3_3:-78586155 | Msa0475410:CDS |
| ATAACATTTGTTAGAGAACT+AGG | 0.446766 | 3_3:-78586974 | Msa0475410:five_prime_UTR |
| TATAACATATTGTATTGTAT+AGG | 0.463518 | 3_3:+78585898 | Msa0475400:intron |
| TTACCGTCATGCACAAGAAC+AGG | 0.465185 | 3_3:+78586751 | Msa0475400:three_prime_UTR |
| CATAGAATACTATAATATCA+AGG | 0.468017 | 3_3:-78585618 | Msa0475410:three_prime_UTR |
| CGCGCCTTGGCCCTCTCATA+GGG | 0.469964 | 3_3:+78586652 | Msa0475400:three_prime_UTR |
| AGTGGGCTCTTGAACTAAAA+GGG | 0.471204 | 3_3:-78586855 | Msa0475410:CDS |
| ACTCACGTTACTAGGGTTCT+GGG | 0.475091 | 3_3:-78586902 | Msa0475410:CDS |
| GAGGGAAGGCGCTACTTTGG+AGG | 0.487384 | 3_3:-78586167 | Msa0475410:CDS |
| GATGTGTGTGTATGATATAT+GGG | 0.488055 | 3_3:-78585848 | Msa0475410:three_prime_UTR |
| GCTTTGCTGATATTGCTGTT+GGG | 0.489214 | 3_3:-78586133 | Msa0475410:CDS |
| CAAGAGCCCACTTGACCCTC+AGG | 0.492284 | 3_3:+78586866 | Msa0475400:three_prime_UTR |
| ATTAGTTTAGGTTTGAGCTC+AGG | 0.493653 | 3_3:+78585734 | Msa0475400:intron |
| TAACGTCTTGATTAAATAAG+CGG | 0.496299 | 3_3:+78585648 | Msa0475400:intron |
| GGGTAGTCCATTTGTCCTGA+GGG | 0.524592 | 3_3:-78586881 | Msa0475410:CDS |
| CCTGATTGATACAGAGTCCA+TGG | 0.533258 | 3_3:-78586063 | Msa0475410:CDS |
| AATTTGAAGATCCTTGAAAG+TGG | 0.535582 | 3_3:-78586194 | Msa0475410:CDS |
| GGGGTAGTCCATTTGTCCTG+AGG | 0.544193 | 3_3:-78586882 | Msa0475410:CDS |
| GTATAATCCTGTTTATAAGA+AGG | 0.544339 | 3_3:-78586776 | Msa0475410:CDS |
| TTTAGCCCAAAATCGCGCCT+TGG | 0.545817 | 3_3:+78586639 | Msa0475400:three_prime_UTR |
| AAGAAAGTCATCGAAGTAAG+TGG | 0.546614 | 3_3:+78586031 | Msa0475400:three_prime_UTR |
| CATTTGTCCTGAGGGTCAAG+TGG | 0.551709 | 3_3:-78586873 | Msa0475410:CDS |
| AACTAGGAATGAGAAAGAGC+AGG | 0.568013 | 3_3:-78586958 | Msa0475410:five_prime_UTR |
| ATTTGTCCTGAGGGTCAAGT+GGG | 0.573803 | 3_3:-78586872 | Msa0475410:CDS |
| GCCCTCTCATAGGGATCATG+TGG | 0.575393 | 3_3:+78586661 | Msa0475400:three_prime_UTR |
| TAGGGATCATGTGGAAGAAG+AGG | 0.575719 | 3_3:+78586670 | Msa0475400:three_prime_UTR |
| GAGACTCACTCACGTTACTA+GGG | 0.583299 | 3_3:-78586909 | Msa0475410:CDS |
| GATCCTTGAAAGTGGACTTG+AGG | 0.587591 | 3_3:-78586186 | Msa0475410:CDS |
| GTAAGTGGTAAGTTTAGCCA+TGG | 0.594981 | 3_3:+78586046 | Msa0475400:three_prime_UTR |
| AATAGGAGAGGAACAACAGA+AGG | 0.601970 | 3_3:-78586237 | Msa0475410:CDS |
| ATAGAATACTATAATATCAA+GGG | 0.602332 | 3_3:-78585617 | Msa0475410:three_prime_UTR |
| TCCACATGATCCCTATGAGA+GGG | 0.621697 | 3_3:-78586662 | Msa0475410:CDS |
| ATGAAGATGTCAAGACCTTG+TGG | 0.622264 | 3_3:+78585943 | Msa0475400:three_prime_UTR |
| CATATTGTATTGTATAGGTG+TGG | 0.627030 | 3_3:+78585903 | Msa0475400:intron |
| GTGGGCTCTTGAACTAAAAG+GGG | 0.630143 | 3_3:-78586854 | Msa0475410:CDS |
| TTCCACATGATCCCTATGAG+AGG | 0.630417 | 3_3:-78586663 | Msa0475410:CDS |
| TTGAAAGTGGACTTGAGGGA+AGG | 0.636293 | 3_3:-78586181 | Msa0475410:CDS |
| GCACAGCAAGGCCTTCCACA+AGG | 0.644456 | 3_3:-78585958 | Msa0475410:CDS |
| AGATGTCAAGACCTTGTGGA+AGG | 0.645290 | 3_3:+78585947 | Msa0475400:three_prime_UTR |
| CTCACGTTACTAGGGTTCTG+GGG | 0.648274 | 3_3:-78586901 | Msa0475410:CDS |
| TCAAGTAACTTATCATGAGA+CGG | 0.652385 | 3_3:+78585981 | Msa0475400:three_prime_UTR |
| TGATCCCTATGAGAGGGCCA+AGG | 0.658261 | 3_3:-78586656 | Msa0475410:CDS |
| TAAGTTACTTGAGCACAGCA+AGG | 0.675812 | 3_3:-78585970 | Msa0475410:CDS |
| TGATATTATAGTATTCTATG+GGG | 0.676578 | 3_3:+78585621 | Msa0475400:intron |
| GTACCTGTTCTTGTGCATGA+CGG | 0.690851 | 3_3:-78586754 | Msa0475410:CDS |
| CGAGTGATAGAAGAAACTGT+AGG | 0.708991 | 3_3:-78586092 | Msa0475410:CDS |
| TGTGTGTATGATAATATGCG+TGG | 0.738199 | 3_3:-78585778 | Msa0475410:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAACATATTGTATTGTAT+AGG | + | chr3_3:78586681-78586700 | Msa0475400:three_prime_UTR | 15.0% |
| !!! | TCTTGTAAAAGTAATTTTAA+TGG | - | chr3_3:78586901-78586920 | Msa0475410:CDS | 15.0% |
| !!! | CTTGTAAAAGTAATTTTAAT+GGG | - | chr3_3:78586902-78586921 | Msa0475410:CDS | 15.0% |
| !! | TTGATATTATAGTATTCTAT+GGG | + | chr3_3:78586959-78586978 | Msa0475400:three_prime_UTR | 15.0% |
| !! | ATAGAATACTATAATATCAA+GGG | - | chr3_3:78586959-78586978 | Msa0475410:five_prime_UTR | 15.0% |
| !! | TATAACATATTGTATTGTAT+AGG | + | chr3_3:78586681-78586700 | Msa0475400:three_prime_UTR | 15.0% |
| !!! | TCTTGTAAAAGTAATTTTAA+TGG | - | chr3_3:78586901-78586920 | Msa0475410:CDS | 15.0% |
| !!! | CTTGTAAAAGTAATTTTAAT+GGG | - | chr3_3:78586902-78586921 | Msa0475410:CDS | 15.0% |
| !! | TTGATATTATAGTATTCTAT+GGG | + | chr3_3:78586959-78586978 | Msa0475400:three_prime_UTR | 15.0% |
| !! | ATAGAATACTATAATATCAA+GGG | - | chr3_3:78586959-78586978 | Msa0475410:five_prime_UTR | 15.0% |
| !! | TGTTTGATTAAAAGCAAAAA+TGG | - | chr3_3:78585641-78585660 | Msa0475410:three_prime_UTR | 20.0% |
| !! | TAAAATCTTCTTCAACATAT+TGG | + | chr3_3:78585755-78585774 | Msa0475400:intron | 20.0% |
| !!! | AATATGTTGAAGAAGATTTT+AGG | - | chr3_3:78585754-78585773 | Msa0475410:three_prime_UTR | 20.0% |
| !!! | CTTTTGAGTAATAGTTTAAT+TGG | + | chr3_3:78586136-78586155 | Msa0475400:three_prime_UTR | 20.0% |
| !! | ATTAACATATTGCATGATAT+TGG | + | chr3_3:78586763-78586782 | Msa0475400:three_prime_UTR | 20.0% |
| !! | TGATATTATAGTATTCTATG+GGG | + | chr3_3:78586958-78586977 | Msa0475400:three_prime_UTR | 20.0% |
| !! | CTTGATATTATAGTATTCTA+TGG | + | chr3_3:78586960-78586979 | Msa0475400:three_prime_UTR | 20.0% |
| !! | CATAGAATACTATAATATCA+AGG | - | chr3_3:78586958-78586977 | Msa0475410:five_prime_UTR | 20.0% |
| !! | TGTTTGATTAAAAGCAAAAA+TGG | - | chr3_3:78585641-78585660 | Msa0475410:three_prime_UTR | 20.0% |
| !! | TAAAATCTTCTTCAACATAT+TGG | + | chr3_3:78585755-78585774 | Msa0475400:intron | 20.0% |
| !!! | AATATGTTGAAGAAGATTTT+AGG | - | chr3_3:78585754-78585773 | Msa0475410:three_prime_UTR | 20.0% |
| !!! | CTTTTGAGTAATAGTTTAAT+TGG | + | chr3_3:78586136-78586155 | Msa0475400:three_prime_UTR | 20.0% |
| !! | ATTAACATATTGCATGATAT+TGG | + | chr3_3:78586763-78586782 | Msa0475400:three_prime_UTR | 20.0% |
| !! | TGATATTATAGTATTCTATG+GGG | + | chr3_3:78586958-78586977 | Msa0475400:three_prime_UTR | 20.0% |
| !! | CTTGATATTATAGTATTCTA+TGG | + | chr3_3:78586960-78586979 | Msa0475400:three_prime_UTR | 20.0% |
| !! | CATAGAATACTATAATATCA+AGG | - | chr3_3:78586958-78586977 | Msa0475410:five_prime_UTR | 20.0% |
| !! | ATAACATTTGTTAGAGAACT+AGG | - | chr3_3:78585602-78585621 | Msa0475410:three_prime_UTR | 25.0% |
| ! | GTATAATCCTGTTTATAAGA+AGG | - | chr3_3:78585800-78585819 | Msa0475410:three_prime_UTR | 25.0% |
| !!! | ATAGCTACCTTTTTCAAAAT+AGG | - | chr3_3:78586322-78586341 | Msa0475410:intron | 25.0% |
| !!! | TGTGTTTACATGATTAGTTT+AGG | + | chr3_3:78586857-78586876 | Msa0475400:three_prime_UTR | 25.0% |
| ! | TAACGTCTTGATTAAATAAG+CGG | + | chr3_3:78586931-78586950 | Msa0475400:three_prime_UTR | 25.0% |
| ! | TAGTTCTCTAACAAATGTTA+TGG | + | chr3_3:78585603-78585622 | Msa0475400:intron | 25.0% |
| !! | ATAACATTTGTTAGAGAACT+AGG | - | chr3_3:78585602-78585621 | Msa0475410:three_prime_UTR | 25.0% |
| ! | GTATAATCCTGTTTATAAGA+AGG | - | chr3_3:78585800-78585819 | Msa0475410:three_prime_UTR | 25.0% |
| !!! | ATAGCTACCTTTTTCAAAAT+AGG | - | chr3_3:78586322-78586341 | Msa0475410:intron | 25.0% |
| !!! | TGTGTTTACATGATTAGTTT+AGG | + | chr3_3:78586857-78586876 | Msa0475400:three_prime_UTR | 25.0% |
| ! | TAACGTCTTGATTAAATAAG+CGG | + | chr3_3:78586931-78586950 | Msa0475400:three_prime_UTR | 25.0% |
| TGATTAAAAGCAAAAATGGC+AGG | - | chr3_3:78585645-78585664 | Msa0475410:three_prime_UTR | 30.0% | |
| AATCACTAGTGATTCTGATA+TGG | + | chr3_3:78585853-78585872 | Msa0475400:intron | 30.0% | |
| ! | TGGCTTTTATACCTTATCAT+CGG | + | chr3_3:78585967-78585986 | Msa0475400:three_prime_UTR | 30.0% |
| ! | ATCATGTTCTTTAGAAGTCA+TGG | + | chr3_3:78585987-78586006 | Msa0475400:three_prime_UTR | 30.0% |
| !!! | AAGGTTGGTTTTTGTATTAG+AGG | + | chr3_3:78586276-78586295 | Msa0475400:intron | 30.0% |
| AAAAAGGTAGCTATAAATGC+TGG | + | chr3_3:78586316-78586335 | Msa0475400:intron | 30.0% | |
| !!! | TACCTTTTTCAAAATAGGAG+AGG | - | chr3_3:78586327-78586346 | Msa0475410:intron | 30.0% |
| !! | TTCCTCTCCTATTTTGAAAA+AGG | + | chr3_3:78586332-78586351 | Msa0475400:intron | 30.0% |
| AATTTGAAGATCCTTGAAAG+TGG | - | chr3_3:78586382-78586401 | Msa0475410:intron | 30.0% | |
| ! | TACTTTGGAGGTGAAAATAT+AGG | - | chr3_3:78586421-78586440 | Msa0475410:intron | 30.0% |
| TCAAGTAACTTATCATGAGA+CGG | + | chr3_3:78586598-78586617 | Msa0475400:intron | 30.0% | |
| CATATTGTATTGTATAGGTG+TGG | + | chr3_3:78586676-78586695 | Msa0475400:three_prime_UTR | 30.0% | |
| TGATGTGTGTGTATGATATA+TGG | - | chr3_3:78586727-78586746 | Msa0475410:CDS | 30.0% | |
| GATGTGTGTGTATGATATAT+GGG | - | chr3_3:78586728-78586747 | Msa0475410:CDS | 30.0% | |
| TGATTAAAAGCAAAAATGGC+AGG | - | chr3_3:78585645-78585664 | Msa0475410:three_prime_UTR | 30.0% | |
| AATCACTAGTGATTCTGATA+TGG | + | chr3_3:78585853-78585872 | Msa0475400:intron | 30.0% | |
| ! | TGGCTTTTATACCTTATCAT+CGG | + | chr3_3:78585967-78585986 | Msa0475400:three_prime_UTR | 30.0% |
| ! | ATCATGTTCTTTAGAAGTCA+TGG | + | chr3_3:78585987-78586006 | Msa0475400:three_prime_UTR | 30.0% |
| !!! | AAGGTTGGTTTTTGTATTAG+AGG | + | chr3_3:78586276-78586295 | Msa0475400:intron | 30.0% |
| AAAAAGGTAGCTATAAATGC+TGG | + | chr3_3:78586316-78586335 | Msa0475400:intron | 30.0% | |
| !!! | TACCTTTTTCAAAATAGGAG+AGG | - | chr3_3:78586327-78586346 | Msa0475410:intron | 30.0% |
| !! | TTCCTCTCCTATTTTGAAAA+AGG | + | chr3_3:78586332-78586351 | Msa0475400:intron | 30.0% |
| AATTTGAAGATCCTTGAAAG+TGG | - | chr3_3:78586382-78586401 | Msa0475410:intron | 30.0% | |
| ! | TACTTTGGAGGTGAAAATAT+AGG | - | chr3_3:78586421-78586440 | Msa0475410:intron | 30.0% |
| TCAAGTAACTTATCATGAGA+CGG | + | chr3_3:78586598-78586617 | Msa0475400:intron | 30.0% | |
| CATATTGTATTGTATAGGTG+TGG | + | chr3_3:78586676-78586695 | Msa0475400:three_prime_UTR | 30.0% | |
| TGATGTGTGTGTATGATATA+TGG | - | chr3_3:78586727-78586746 | Msa0475410:CDS | 30.0% | |
| GATGTGTGTGTATGATATAT+GGG | - | chr3_3:78586728-78586747 | Msa0475410:CDS | 30.0% | |
| ACAGGTACCTTCTTATAAAC+AGG | + | chr3_3:78585810-78585829 | Msa0475400:intron | 35.0% | |
| ! | TAGAGTATGTTGATGAGATC+TGG | - | chr3_3:78585874-78585893 | Msa0475410:three_prime_UTR | 35.0% |
| GATCAAACCAAACATCAAGT+TGG | + | chr3_3:78586043-78586062 | Msa0475400:three_prime_UTR | 35.0% | |
| !! | TTGGTTTTTGTATTAGAGGC+TGG | + | chr3_3:78586272-78586291 | Msa0475400:three_prime_UTR | 35.0% |
| CACACTGAAATAGAAAAGGT+TGG | + | chr3_3:78586291-78586310 | Msa0475400:intron | 35.0% | |
| !!! | GATATTGCTGTTGGGTTTTT+TGG | - | chr3_3:78586451-78586470 | Msa0475410:intron | 35.0% |
| !!! | TGTTGGGTTTTTTGGATTCT+GGG | - | chr3_3:78586459-78586478 | Msa0475410:intron | 35.0% |
| AAGAAAGTCATCGAAGTAAG+TGG | + | chr3_3:78586548-78586567 | Msa0475400:intron | 35.0% | |
| TGTGTGTATGATAATATGCG+TGG | - | chr3_3:78586798-78586817 | Msa0475410:CDS | 35.0% | |
| ! | ATTAGTTTAGGTTTGAGCTC+AGG | + | chr3_3:78586845-78586864 | Msa0475400:three_prime_UTR | 35.0% |
| ACAGGTACCTTCTTATAAAC+AGG | + | chr3_3:78585810-78585829 | Msa0475400:intron | 35.0% | |
| ! | TAGAGTATGTTGATGAGATC+TGG | - | chr3_3:78585874-78585893 | Msa0475410:three_prime_UTR | 35.0% |
| GATCAAACCAAACATCAAGT+TGG | + | chr3_3:78586043-78586062 | Msa0475400:three_prime_UTR | 35.0% | |
| !! | TTGGTTTTTGTATTAGAGGC+TGG | + | chr3_3:78586272-78586291 | Msa0475400:three_prime_UTR | 35.0% |
| CACACTGAAATAGAAAAGGT+TGG | + | chr3_3:78586291-78586310 | Msa0475400:intron | 35.0% | |
| !!! | GATATTGCTGTTGGGTTTTT+TGG | - | chr3_3:78586451-78586470 | Msa0475410:intron | 35.0% |
| !!! | TGTTGGGTTTTTTGGATTCT+GGG | - | chr3_3:78586459-78586478 | Msa0475410:intron | 35.0% |
| AAGAAAGTCATCGAAGTAAG+TGG | + | chr3_3:78586548-78586567 | Msa0475400:intron | 35.0% | |
| TGTGTGTATGATAATATGCG+TGG | - | chr3_3:78586798-78586817 | Msa0475410:CDS | 35.0% | |
| ! | ATTAGTTTAGGTTTGAGCTC+AGG | + | chr3_3:78586845-78586864 | Msa0475400:three_prime_UTR | 35.0% |
| AACTAGGAATGAGAAAGAGC+AGG | - | chr3_3:78585618-78585637 | Msa0475410:three_prime_UTR | 40.0% | |
| ! | AAGTGGGCTCTTGAACTAAA+AGG | - | chr3_3:78585720-78585739 | Msa0475410:three_prime_UTR | 40.0% |
| ! | AGTGGGCTCTTGAACTAAAA+GGG | - | chr3_3:78585721-78585740 | Msa0475410:three_prime_UTR | 40.0% |
| AAGAACATGATCAAACCGTC+TGG | - | chr3_3:78585996-78586015 | Msa0475410:CDS | 40.0% | |
| ! | ATCAAACCGTCTGGTTCAAA+TGG | - | chr3_3:78586005-78586024 | Msa0475410:CDS | 40.0% |
| GTTCAACCATTTGAACCAGA+CGG | + | chr3_3:78586014-78586033 | Msa0475400:three_prime_UTR | 40.0% | |
| !! | CCAAACATCAAGTTGGTTTC+TGG | + | chr3_3:78586036-78586055 | Msa0475400:three_prime_UTR | 40.0% |
| CCAGAAACCAACTTGATGTT+TGG | - | chr3_3:78586033-78586052 | Msa0475410:CDS | 40.0% | |
| AGTCTCAACATTTCGATCTC+TGG | - | chr3_3:78586154-78586173 | Msa0475410:CDS | 40.0% | |
| GGCACACACTGAAATAGAAA+AGG | + | chr3_3:78586295-78586314 | Msa0475400:intron | 40.0% | |
| AATAGGAGAGGAACAACAGA+AGG | - | chr3_3:78586339-78586358 | Msa0475410:intron | 40.0% | |
| ! | ATCCTTGAAAGTGGACTTGA+GGG | - | chr3_3:78586391-78586410 | Msa0475410:intron | 40.0% |
| ! | GCTTTGCTGATATTGCTGTT+GGG | - | chr3_3:78586443-78586462 | Msa0475410:intron | 40.0% |
| !!! | CTGTTGGGTTTTTTGGATTC+TGG | - | chr3_3:78586458-78586477 | Msa0475410:intron | 40.0% |
| CGAGTGATAGAAGAAACTGT+AGG | - | chr3_3:78586484-78586503 | Msa0475410:intron | 40.0% | |
| GTAAGTGGTAAGTTTAGCCA+TGG | + | chr3_3:78586533-78586552 | Msa0475400:intron | 40.0% | |
| TAAGTTACTTGAGCACAGCA+AGG | - | chr3_3:78586606-78586625 | Msa0475410:intron | 40.0% | |
| ATGAAGATGTCAAGACCTTG+TGG | + | chr3_3:78586636-78586655 | Msa0475400:three_prime_UTR | 40.0% | |
| GACATCTTCATCAGCTTAAG+AGG | - | chr3_3:78586645-78586664 | Msa0475410:CDS | 40.0% | |
| AACTAGGAATGAGAAAGAGC+AGG | - | chr3_3:78585618-78585637 | Msa0475410:three_prime_UTR | 40.0% | |
| ! | AAGTGGGCTCTTGAACTAAA+AGG | - | chr3_3:78585720-78585739 | Msa0475410:three_prime_UTR | 40.0% |
| ! | AGTGGGCTCTTGAACTAAAA+GGG | - | chr3_3:78585721-78585740 | Msa0475410:three_prime_UTR | 40.0% |
| AAGAACATGATCAAACCGTC+TGG | - | chr3_3:78585996-78586015 | Msa0475410:CDS | 40.0% | |
| ! | ATCAAACCGTCTGGTTCAAA+TGG | - | chr3_3:78586005-78586024 | Msa0475410:CDS | 40.0% |
| GTTCAACCATTTGAACCAGA+CGG | + | chr3_3:78586014-78586033 | Msa0475400:three_prime_UTR | 40.0% | |
| !! | CCAAACATCAAGTTGGTTTC+TGG | + | chr3_3:78586036-78586055 | Msa0475400:three_prime_UTR | 40.0% |
| CCAGAAACCAACTTGATGTT+TGG | - | chr3_3:78586033-78586052 | Msa0475410:CDS | 40.0% | |
| AGTCTCAACATTTCGATCTC+TGG | - | chr3_3:78586154-78586173 | Msa0475410:CDS | 40.0% | |
| GGCACACACTGAAATAGAAA+AGG | + | chr3_3:78586295-78586314 | Msa0475400:intron | 40.0% | |
| AATAGGAGAGGAACAACAGA+AGG | - | chr3_3:78586339-78586358 | Msa0475410:intron | 40.0% | |
| ! | ATCCTTGAAAGTGGACTTGA+GGG | - | chr3_3:78586391-78586410 | Msa0475410:intron | 40.0% |
| ! | GCTTTGCTGATATTGCTGTT+GGG | - | chr3_3:78586443-78586462 | Msa0475410:intron | 40.0% |
| !!! | CTGTTGGGTTTTTTGGATTC+TGG | - | chr3_3:78586458-78586477 | Msa0475410:intron | 40.0% |
| CGAGTGATAGAAGAAACTGT+AGG | - | chr3_3:78586484-78586503 | Msa0475410:intron | 40.0% | |
| GTAAGTGGTAAGTTTAGCCA+TGG | + | chr3_3:78586533-78586552 | Msa0475400:intron | 40.0% | |
| TAAGTTACTTGAGCACAGCA+AGG | - | chr3_3:78586606-78586625 | Msa0475410:intron | 40.0% | |
| ATGAAGATGTCAAGACCTTG+TGG | + | chr3_3:78586636-78586655 | Msa0475400:three_prime_UTR | 40.0% | |
| GACATCTTCATCAGCTTAAG+AGG | - | chr3_3:78586645-78586664 | Msa0475410:CDS | 40.0% | |
| GAGACTCACTCACGTTACTA+GGG | - | chr3_3:78585667-78585686 | Msa0475410:three_prime_UTR | 45.0% | |
| ACTCACGTTACTAGGGTTCT+GGG | - | chr3_3:78585674-78585693 | Msa0475410:three_prime_UTR | 45.0% | |
| ATTTGTCCTGAGGGTCAAGT+GGG | - | chr3_3:78585704-78585723 | Msa0475410:three_prime_UTR | 45.0% | |
| GTGGGCTCTTGAACTAAAAG+GGG | - | chr3_3:78585722-78585741 | Msa0475410:three_prime_UTR | 45.0% | |
| GTACCTGTTCTTGTGCATGA+CGG | - | chr3_3:78585822-78585841 | Msa0475410:three_prime_UTR | 45.0% | |
| TTACCGTCATGCACAAGAAC+AGG | + | chr3_3:78585828-78585847 | Msa0475400:intron | 45.0% | |
| TAGGGATCATGTGGAAGAAG+AGG | + | chr3_3:78585909-78585928 | Msa0475400:intron | 45.0% | |
| TTCCACATGATCCCTATGAG+AGG | - | chr3_3:78585913-78585932 | Msa0475410:three_prime_UTR | 45.0% | |
| TCCACATGATCCCTATGAGA+GGG | - | chr3_3:78585914-78585933 | Msa0475410:three_prime_UTR | 45.0% | |
| GGCTAAATTCGCCGATGATA+AGG | - | chr3_3:78585953-78585972 | Msa0475410:CDS | 45.0% | |
| ! | GATCCTTGAAAGTGGACTTG+AGG | - | chr3_3:78586390-78586409 | Msa0475410:intron | 45.0% |
| TTCCCTCAAGTCCACTTTCA+AGG | + | chr3_3:78586396-78586415 | Msa0475400:intron | 45.0% | |
| ! | TTGAAAGTGGACTTGAGGGA+AGG | - | chr3_3:78586395-78586414 | Msa0475410:intron | 45.0% |
| GGCTTTGCTGATATTGCTGT+TGG | - | chr3_3:78586442-78586461 | Msa0475410:intron | 45.0% | |
| CCATGGACTCTGTATCAATC+AGG | + | chr3_3:78586516-78586535 | Msa0475400:intron | 45.0% | |
| CCTGATTGATACAGAGTCCA+TGG | - | chr3_3:78586513-78586532 | Msa0475410:intron | 45.0% | |
| ! | GGCGTGCATTCTTTGATAAC+AGG | + | chr3_3:78586577-78586596 | Msa0475400:intron | 45.0% |
| AGATGTCAAGACCTTGTGGA+AGG | + | chr3_3:78586632-78586651 | Msa0475400:three_prime_UTR | 45.0% | |
| GAGCTCAGGTTCGTGTTTAT+AGG | + | chr3_3:78586831-78586850 | Msa0475400:three_prime_UTR | 45.0% | |
| GAGACTCACTCACGTTACTA+GGG | - | chr3_3:78585667-78585686 | Msa0475410:three_prime_UTR | 45.0% | |
| ACTCACGTTACTAGGGTTCT+GGG | - | chr3_3:78585674-78585693 | Msa0475410:three_prime_UTR | 45.0% | |
| ATTTGTCCTGAGGGTCAAGT+GGG | - | chr3_3:78585704-78585723 | Msa0475410:three_prime_UTR | 45.0% | |
| GTGGGCTCTTGAACTAAAAG+GGG | - | chr3_3:78585722-78585741 | Msa0475410:three_prime_UTR | 45.0% | |
| GTACCTGTTCTTGTGCATGA+CGG | - | chr3_3:78585822-78585841 | Msa0475410:three_prime_UTR | 45.0% | |
| TTACCGTCATGCACAAGAAC+AGG | + | chr3_3:78585828-78585847 | Msa0475400:intron | 45.0% | |
| TAGGGATCATGTGGAAGAAG+AGG | + | chr3_3:78585909-78585928 | Msa0475400:intron | 45.0% | |
| TTCCACATGATCCCTATGAG+AGG | - | chr3_3:78585913-78585932 | Msa0475410:three_prime_UTR | 45.0% | |
| TCCACATGATCCCTATGAGA+GGG | - | chr3_3:78585914-78585933 | Msa0475410:three_prime_UTR | 45.0% | |
| GGCTAAATTCGCCGATGATA+AGG | - | chr3_3:78585953-78585972 | Msa0475410:CDS | 45.0% | |
| ! | GATCCTTGAAAGTGGACTTG+AGG | - | chr3_3:78586390-78586409 | Msa0475410:intron | 45.0% |
| TTCCCTCAAGTCCACTTTCA+AGG | + | chr3_3:78586396-78586415 | Msa0475400:intron | 45.0% | |
| ! | TTGAAAGTGGACTTGAGGGA+AGG | - | chr3_3:78586395-78586414 | Msa0475410:intron | 45.0% |
| GGCTTTGCTGATATTGCTGT+TGG | - | chr3_3:78586442-78586461 | Msa0475410:intron | 45.0% | |
| CCATGGACTCTGTATCAATC+AGG | + | chr3_3:78586516-78586535 | Msa0475400:intron | 45.0% | |
| CCTGATTGATACAGAGTCCA+TGG | - | chr3_3:78586513-78586532 | Msa0475410:intron | 45.0% | |
| ! | GGCGTGCATTCTTTGATAAC+AGG | + | chr3_3:78586577-78586596 | Msa0475400:intron | 45.0% |
| AGATGTCAAGACCTTGTGGA+AGG | + | chr3_3:78586632-78586651 | Msa0475400:three_prime_UTR | 45.0% | |
| GAGCTCAGGTTCGTGTTTAT+AGG | + | chr3_3:78586831-78586850 | Msa0475400:three_prime_UTR | 45.0% | |
| GGAGACTCACTCACGTTACT+AGG | - | chr3_3:78585666-78585685 | Msa0475410:three_prime_UTR | 50.0% | |
| CACTCACGTTACTAGGGTTC+TGG | - | chr3_3:78585673-78585692 | Msa0475410:three_prime_UTR | 50.0% | |
| CTCACGTTACTAGGGTTCTG+GGG | - | chr3_3:78585675-78585694 | Msa0475410:three_prime_UTR | 50.0% | |
| GGGTAGTCCATTTGTCCTGA+GGG | - | chr3_3:78585695-78585714 | Msa0475410:three_prime_UTR | 50.0% | |
| CACTTGACCCTCAGGACAAA+TGG | + | chr3_3:78585705-78585724 | Msa0475400:intron | 50.0% | |
| CATTTGTCCTGAGGGTCAAG+TGG | - | chr3_3:78585703-78585722 | Msa0475410:three_prime_UTR | 50.0% | |
| TTTAGCCCAAAATCGCGCCT+TGG | + | chr3_3:78585940-78585959 | Msa0475400:three_prime_UTR | 50.0% | |
| GGAGACTCACTCACGTTACT+AGG | - | chr3_3:78585666-78585685 | Msa0475410:three_prime_UTR | 50.0% | |
| CACTCACGTTACTAGGGTTC+TGG | - | chr3_3:78585673-78585692 | Msa0475410:three_prime_UTR | 50.0% | |
| CTCACGTTACTAGGGTTCTG+GGG | - | chr3_3:78585675-78585694 | Msa0475410:three_prime_UTR | 50.0% | |
| GGGTAGTCCATTTGTCCTGA+GGG | - | chr3_3:78585695-78585714 | Msa0475410:three_prime_UTR | 50.0% | |
| CACTTGACCCTCAGGACAAA+TGG | + | chr3_3:78585705-78585724 | Msa0475400:intron | 50.0% | |
| CATTTGTCCTGAGGGTCAAG+TGG | - | chr3_3:78585703-78585722 | Msa0475410:three_prime_UTR | 50.0% | |
| TTTAGCCCAAAATCGCGCCT+TGG | + | chr3_3:78585940-78585959 | Msa0475400:three_prime_UTR | 50.0% | |
| GGGGTAGTCCATTTGTCCTG+AGG | - | chr3_3:78585694-78585713 | Msa0475410:three_prime_UTR | 55.0% | |
| GCCCTCTCATAGGGATCATG+TGG | + | chr3_3:78585918-78585937 | Msa0475400:intron | 55.0% | |
| TGATCCCTATGAGAGGGCCA+AGG | - | chr3_3:78585920-78585939 | Msa0475410:exon | 55.0% | |
| !! | CTTGAGGGAAGGCGCTACTT+TGG | - | chr3_3:78586406-78586425 | Msa0475410:intron | 55.0% |
| GGGGTAGTCCATTTGTCCTG+AGG | - | chr3_3:78585694-78585713 | Msa0475410:three_prime_UTR | 55.0% | |
| GCCCTCTCATAGGGATCATG+TGG | + | chr3_3:78585918-78585937 | Msa0475400:intron | 55.0% | |
| TGATCCCTATGAGAGGGCCA+AGG | - | chr3_3:78585920-78585939 | Msa0475410:exon | 55.0% | |
| !! | CTTGAGGGAAGGCGCTACTT+TGG | - | chr3_3:78586406-78586425 | Msa0475410:intron | 55.0% |
| CAAGAGCCCACTTGACCCTC+AGG | + | chr3_3:78585713-78585732 | Msa0475400:intron | 60.0% | |
| ! | AGAGGGCCAAGGCGCGATTT+TGG | - | chr3_3:78585931-78585950 | Msa0475410:exon | 60.0% |
| ! | GAGGGCCAAGGCGCGATTTT+GGG | - | chr3_3:78585932-78585951 | Msa0475410:exon | 60.0% |
| !! | GAGGGAAGGCGCTACTTTGG+AGG | - | chr3_3:78586409-78586428 | Msa0475410:intron | 60.0% |
| GCACAGCAAGGCCTTCCACA+AGG | - | chr3_3:78586618-78586637 | Msa0475410:intron | 60.0% | |
| CAAGAGCCCACTTGACCCTC+AGG | + | chr3_3:78585713-78585732 | Msa0475400:intron | 60.0% | |
| ! | AGAGGGCCAAGGCGCGATTT+TGG | - | chr3_3:78585931-78585950 | Msa0475410:exon | 60.0% |
| ! | GAGGGCCAAGGCGCGATTTT+GGG | - | chr3_3:78585932-78585951 | Msa0475410:exon | 60.0% |
| !! | GAGGGAAGGCGCTACTTTGG+AGG | - | chr3_3:78586409-78586428 | Msa0475410:intron | 60.0% |
| GCACAGCAAGGCCTTCCACA+AGG | - | chr3_3:78586618-78586637 | Msa0475410:intron | 60.0% | |
| CGCGCCTTGGCCCTCTCATA+GGG | + | chr3_3:78585927-78585946 | Msa0475400:three_prime_UTR | 65.0% | |
| TCGCGCCTTGGCCCTCTCAT+AGG | + | chr3_3:78585928-78585947 | Msa0475400:three_prime_UTR | 65.0% | |
| CGCGCCTTGGCCCTCTCATA+GGG | + | chr3_3:78585927-78585946 | Msa0475400:three_prime_UTR | 65.0% | |
| TCGCGCCTTGGCCCTCTCAT+AGG | + | chr3_3:78585928-78585947 | Msa0475400:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 78585602 | 78586996 | 78585602 | ID=Msa0475410;Name=Msa0475410 |
| chr3_3 | mRNA | 78585602 | 78586996 | 78585602 | ID=Msa0475410-mRNA-1;Parent=Msa0475410;Name=Msa0475410-mRNA-1;_AED=0.01;_eAED=0.01;_QI=58|1|1|1|1|1|2|333|223 |
| chr3_3 | exon | 78585602 | 78586291 | 78585602 | ID=Msa0475410-mRNA-1:exon:21170;Parent=Msa0475410-mRNA-1 |
| chr3_3 | exon | 78586624 | 78586996 | 78586624 | ID=Msa0475410-mRNA-1:exon:21169;Parent=Msa0475410-mRNA-1 |
| chr3_3 | five_prime_UTR | 78586939 | 78586996 | 78586939 | ID=Msa0475410-mRNA-1:five_prime_utr;Parent=Msa0475410-mRNA-1 |
| chr3_3 | CDS | 78586624 | 78586938 | 78586624 | ID=Msa0475410-mRNA-1:cds;Parent=Msa0475410-mRNA-1 |
| chr3_3 | CDS | 78585935 | 78586291 | 78585935 | ID=Msa0475410-mRNA-1:cds;Parent=Msa0475410-mRNA-1 |
| chr3_3 | three_prime_UTR | 78585602 | 78585934 | 78585602 | ID=Msa0475410-mRNA-1:three_prime_utr;Parent=Msa0475410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
